<?xml version="1.0"?>
<rdf:RDF xmlns="http://purl.obolibrary.org/obo/pco/pco-full.owl#"
xml:base="http://purl.obolibrary.org/obo/pco/pco-full.owl"
xmlns:dc="http://purl.org/dc/elements/1.1/"
xmlns:obo="http://purl.obolibrary.org/obo/"
xmlns:owl="http://www.w3.org/2002/07/owl#"
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
xmlns:xml="http://www.w3.org/XML/1998/namespace"
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:foaf="http://xmlns.com/foaf/0.1/"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:swrl="http://www.w3.org/2003/11/swrl#"
xmlns:swrla="http://swrl.stanford.edu/ontologies/3.3/swrla.owl#"
xmlns:swrlb="http://www.w3.org/2003/11/swrlb#"
xmlns:terms="http://purl.org/dc/terms/"
xmlns:protege="http://protege.stanford.edu/plugins/owl/protege#"
xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"
xmlns:ncbitaxon="http://purl.obolibrary.org/obo/ncbitaxon#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/pco/pco-full.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/pco/releases/2021-05-03/pco-full.owl"/>
<dc:contributor>http://orcid.org/0000-0002-4366-3088</dc:contributor>
<dc:contributor>https://orcid.org/0000-0001-8815-0078</dc:contributor>
<dc:creator>David Osumi-Sutherland</dc:creator>
<dc:creator>Jie Zheng</dc:creator>
<dc:creator>Pier Luigi Buttigieg</dc:creator>
<dc:creator>Ramona Walls</dc:creator>
<dc:description>The Population and Community Ontology (PCO) describes material entities, qualities, and processes related to collections of interacting organisms such as populations and communities. It is taxon neutral, and can be used for any species, including humans. The classes in the PCO are useful for describing evolutionary processes, organismal interactions, and ecological experiments. Practical applications of the PCO include community health care, plant pathology, behavioral studies, sociology, and ecology.</dc:description>
<dc:title>Population and Community Ontology</dc:title>
<terms:license>http://creativecommons.org/publicdomain/zero/1.0/</terms:license>
<rdfs:comment>The Population and Community Ontology (PCO) is licensed under a Creative Commons zero (CC0) license - http://creativecommons.org/publicdomain/zero/1.0/. You can copy, modify, distribute and perform the work, even for commercial purposes, all without asking permission. We ask that anyone using this ontology follow the standards of the scientific ontology community by re-using ontology identifiers whenever possible and properly citing the ontology and its creators.</rdfs:comment>
</owl:Ontology>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Annotation properties
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://protege.stanford.edu/plugins/owl/protege#defaultLanguage -->
<owl:AnnotationProperty rdf:about="http://protege.stanford.edu/plugins/owl/protege#defaultLanguage"/>
<!-- http://purl.obolibrary.org/obo/BFO_0000179 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/BFO_0000179">
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/bfo.owl"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/BFO_0000180 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/BFO_0000180">
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/bfo.owl"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000111 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000111">
<obo:IAO_0000111>editor preferred label</obo:IAO_0000111>
<obo:IAO_0000111 xml:lang="en">editor preferred label</obo:IAO_0000111>
<obo:IAO_0000111>editor preferred term</obo:IAO_0000111>
<obo:IAO_0000111 xml:lang="en">editor preferred term</obo:IAO_0000111>
<obo:IAO_0000111>editor preferred term~editor preferred label</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">The concise, meaningful, and human-friendly name for a class or property preferred by the ontology developers. (US-English)</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON:Daniel Schober</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">GROUP:OBI:<http://purl.obolibrary.org/obo/obi></obo:IAO_0000119>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/iao.owl"/>
<rdfs:label>editor preferred label</rdfs:label>
<rdfs:label xml:lang="en">editor preferred label</rdfs:label>
<rdfs:label>editor preferred term</rdfs:label>
<rdfs:label xml:lang="en">editor preferred term</rdfs:label>
<rdfs:label>editor preferred term~editor preferred label</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000112 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000112">
<obo:IAO_0000111 xml:lang="en">example</obo:IAO_0000111>
<obo:IAO_0000111 xml:lang="en">example of usage</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A phrase describing how a term should be used and/or a citation to a work which uses it. May also include other kinds of examples that facilitate immediate understanding, such as widely know prototypes or instances of a class, or cases where a relation is said to hold.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON:Daniel Schober</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">GROUP:OBI:<http://purl.obolibrary.org/obo/obi></obo:IAO_0000119>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/iao.owl"/>
<rdfs:label xml:lang="en">example of usage</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000113 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000113">
<obo:IAO_0000111 xml:lang="en">in branch</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">An annotation property indicating which module the terms belong to. This is currently experimental and not implemented yet.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">GROUP:OBI</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">OBI_0000277</obo:IAO_0000119>
<rdfs:label xml:lang="en">in branch</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000114 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000114">
<obo:IAO_0000111 xml:lang="en">has curation status</obo:IAO_0000111>
<obo:IAO_0000117 xml:lang="en">PERSON:Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">PERSON:Bill Bug</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">PERSON:Melanie Courtot</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">OBI_0000281</obo:IAO_0000119>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/iao.owl"/>
<rdfs:label>has curation status</rdfs:label>
<rdfs:label xml:lang="en">has curation status</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000115 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000115">
<obo:IAO_0000111>definition</obo:IAO_0000111>
<obo:IAO_0000111 xml:lang="en">definition</obo:IAO_0000111>
<obo:IAO_0000111>textual definition</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">The official OBI definition, explaining the meaning of a class or property. Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions.</obo:IAO_0000115>
<obo:IAO_0000115 xml:lang="en">The official definition, explaining the meaning of a class or property. Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">2012-04-05:
Barry Smith
The official OBI definition, explaining the meaning of a class or property: 'Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions' is terrible.
Can you fix to something like:
A statement of necessary and sufficient conditions explaining the meaning of an expression referring to a class or property.
Alan Ruttenberg
Your proposed definition is a reasonable candidate, except that it is very common that necessary and sufficient conditions are not given. Mostly they are necessary, occasionally they are necessary and sufficient or just sufficient. Often they use terms that are not themselves defined and so they effectively can't be evaluated by those criteria.
On the specifics of the proposed definition:
We don't have definitions of 'meaning' or 'expression' or 'property'. For 'reference' in the intended sense I think we use the term 'denotation'. For 'expression', I think we you mean symbol, or identifier. For 'meaning' it differs for class and property. For class we want documentation that let's the intended reader determine whether an entity is instance of the class, or not. For property we want documentation that let's the intended reader determine, given a pair of potential relata, whether the assertion that the relation holds is true. The 'intended reader' part suggests that we also specify who, we expect, would be able to understand the definition, and also generalizes over human and computer reader to include textual and logical definition.
Personally, I am more comfortable weakening definition to documentation, with instructions as to what is desirable.
We also have the outstanding issue of how to aim different definitions to different audiences. A clinical audience reading chebi wants a different sort of definition documentation/definition from a chemistry trained audience, and similarly there is a need for a definition that is adequate for an ontologist to work with. </obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">PERSON:Daniel Schober</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">GROUP:OBI:<http://purl.obolibrary.org/obo/obi></obo:IAO_0000119>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/iao.owl"/>
<rdfs:label>definition</rdfs:label>
<rdfs:label xml:lang="en">definition</rdfs:label>
<rdfs:label>textual definition</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000116 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000116">
<obo:IAO_0000111 xml:lang="en">editor note</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">An administrative note intended for its editor. It may not be included in the publication version of the ontology, so it should contain nothing necessary for end users to understand the ontology.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON:Daniel Schober</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">GROUP:OBI:<http://purl.obfoundry.org/obo/obi></obo:IAO_0000119>
<obo:IAO_0000119 xml:lang="en">GROUP:OBI:<http://purl.obofoundry.org/obo/obi></obo:IAO_0000119>
<oboInOwl:hasDbXref>IAO:0000116</oboInOwl:hasDbXref>
<oboInOwl:hasOBONamespace>uberon</oboInOwl:hasOBONamespace>
<oboInOwl:id>editor_note</oboInOwl:id>
<oboInOwl:is_metadata_tag rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</oboInOwl:is_metadata_tag>
<oboInOwl:shorthand>editor_note</oboInOwl:shorthand>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/iao.owl"/>
<rdfs:label>editor note</rdfs:label>
<rdfs:label xml:lang="en">editor note</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000117 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000117">
<obo:IAO_0000111 xml:lang="en">term editor</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">Name of editor entering the term in the file. The term editor is a point of contact for information regarding the term. The term editor may be, but is not always, the author of the definition, which may have been worked upon by several people</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">20110707, MC: label update to term editor and definition modified accordingly. See https://github.com/information-artifact-ontology/IAO/issues/115.</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">PERSON:Daniel Schober</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">GROUP:OBI:<http://purl.obolibrary.org/obo/obi></obo:IAO_0000119>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/iao.owl"/>
<rdfs:label>term editor</rdfs:label>
<rdfs:label xml:lang="en">term editor</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000118 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000118">
<obo:IAO_0000111 xml:lang="en">alternative term</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
<obo:IAO_0000115 xml:lang="en">An alternative name for a class or property which means the same thing as the preferred name (semantically equivalent)</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON:Daniel Schober</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">GROUP:OBI:<http://purl.obolibrary.org/obo/obi></obo:IAO_0000119>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/iao.owl"/>
<rdfs:label xml:lang="en">alternative term</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000119 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000119">
<obo:IAO_0000111 xml:lang="en">definition source</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">Formal citation, e.g. identifier in external database to indicate / attribute source(s) for the definition. Free text indicate / attribute source(s) for the definition. EXAMPLE: Author Name, URI, MeSH Term C04, PUBMED ID, Wiki uri on 31.01.2007</obo:IAO_0000115>
<obo:IAO_0000115 xml:lang="en">formal citation, e.g. identifier in external database to indicate / attribute source(s) for the definition. Free text indicate / attribute source(s) for the definition. EXAMPLE: Author Name, URI, MeSH Term C04, PUBMED ID, Wiki uri on 31.01.2007</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON:Daniel Schober</obo:IAO_0000117>
<obo:IAO_0000119>Discussion on obo-discuss mailing-list, see http://bit.ly/hgm99w</obo:IAO_0000119>
<obo:IAO_0000119 xml:lang="en">Discussion on obo-discuss mailing-list, see http://bit.ly/hgm99w</obo:IAO_0000119>
<obo:IAO_0000119 xml:lang="en">GROUP:OBI:<http://purl.obolibrary.org/obo/obi></obo:IAO_0000119>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/iao.owl"/>
<rdfs:label>definition source</rdfs:label>
<rdfs:label xml:lang="en">definition source</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000231 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000231">
<obo:IAO_0000111 xml:lang="en">has obsolescence reason</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">Relates an annotation property to an obsolescence reason. The values of obsolescence reasons come from a list of predefined terms, instances of the class obsolescence reason specification.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON:Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">PERSON:Melanie Courtot</obo:IAO_0000117>
<rdfs:label xml:lang="en">has obsolescence reason</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000232 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000232">
<obo:IAO_0000111 xml:lang="en">curator note</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">An administrative note of use for a curator but of no use for a user</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON:Alan Ruttenberg</obo:IAO_0000117>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/iao.owl"/>
<rdfs:label xml:lang="en">curator note</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000233 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000233">
<obo:IAO_0000111 xml:lang="en">term tracker item</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">the URI for an OBI Terms ticket at sourceforge, such as https://sourceforge.net/p/obi/obi-terms/772/</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
<obo:IAO_0000115 xml:lang="en">An IRI or similar locator for a request or discussion of an ontology term.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Person: Jie Zheng, Chris Stoeckert, Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">Person: Jie Zheng, Chris Stoeckert, Alan Ruttenberg</obo:IAO_0000119>
<rdfs:comment xml:lang="en">The 'tracker item' can associate a tracker with a specific ontology term.</rdfs:comment>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/iao.owl"/>
<rdfs:label xml:lang="en">term tracker item</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000234 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000234">
<obo:IAO_0000111 xml:lang="en">ontology term requester</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
<obo:IAO_0000115 xml:lang="en">The name of the person, project, or organization that motivated inclusion of an ontology term by requesting its addition.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Person: Jie Zheng, Chris Stoeckert, Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">Person: Jie Zheng, Chris Stoeckert, Alan Ruttenberg</obo:IAO_0000119>
<rdfs:comment>The 'term requester' can credit the person, organization or project who request the ontology term.</rdfs:comment>
<rdfs:label xml:lang="en">ontology term requester</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000411 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000411">
<obo:IAO_0000111 xml:lang="en">is denotator type</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">Relates an class defined in an ontology, to the type of it's denotator</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">In OWL 2 add AnnotationPropertyRange('is denotator type' 'denotator type')</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">Alan Ruttenberg</obo:IAO_0000117>
<rdfs:label xml:lang="en">is denotator type</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000412 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000412">
<obo:IAO_0000111 xml:lang="en">imported from</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
<obo:IAO_0000115 xml:lang="en">For external terms/classes, the ontology from which the term was imported</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON:Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">PERSON:Melanie Courtot</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">GROUP:OBI:<http://purl.obolibrary.org/obo/obi></obo:IAO_0000119>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/iao.owl"/>
<rdfs:label xml:lang="en">imported from</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000424 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000424">
<obo:IAO_0000111 xml:lang="en">expand expression to</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">ObjectProperty: RO_0002104
Label: has plasma membrane part
Annotations: IAO_0000424 "http://purl.obolibrary.org/obo/BFO_0000051 some (http://purl.org/obo/owl/GO#GO_0005886 and http://purl.obolibrary.org/obo/BFO_0000051 some ?Y)"
</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">A macro expansion tag applied to an object property (or possibly a data property) which can be used by a macro-expansion engine to generate more complex expressions from simpler ones</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Chris Mungall</obo:IAO_0000117>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/iao.owl"/>
<rdfs:label xml:lang="en">expand expression to</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000425 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000425">
<obo:IAO_0000111 xml:lang="en">expand assertion to</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">ObjectProperty: RO???
Label: spatially disjoint from
Annotations: expand_assertion_to "DisjointClasses: (http://purl.obolibrary.org/obo/BFO_0000051 some ?X) (http://purl.obolibrary.org/obo/BFO_0000051 some ?Y)"
</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">A macro expansion tag applied to an annotation property which can be expanded into a more detailed axiom.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Chris Mungall</obo:IAO_0000117>
<rdfs:label xml:lang="en">expand assertion to</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000426 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000426">
<obo:IAO_0000111 xml:lang="en">first order logic expression</obo:IAO_0000111>
<obo:IAO_0000117 xml:lang="en">PERSON:Alan Ruttenberg</obo:IAO_0000117>
<rdfs:label xml:lang="en">first order logic expression</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000427 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000427">
<obo:IAO_0000111 xml:lang="en">antisymmetric property</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">part_of antisymmetric property xsd:true</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">Use boolean value xsd:true to indicate that the property is an antisymmetric property</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Alan Ruttenberg</obo:IAO_0000117>
<rdfs:label xml:lang="en">antisymmetric property</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000589 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000589">
<obo:IAO_0000111 xml:lang="en">OBO foundry unique label</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
<obo:IAO_0000115 xml:lang="en">An alternative name for a class or property which is unique across the OBO Foundry.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">The intended usage of that property is as follow: OBO foundry unique labels are automatically generated based on regular expressions provided by each ontology, so that SO could specify unique label = 'sequence ' + [label], etc. , MA could specify 'mouse + [label]' etc. Upon importing terms, ontology developers can choose to use the 'OBO foundry unique label' for an imported term or not. The same applies to tools .</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">PERSON:Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">PERSON:Bjoern Peters</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">PERSON:Chris Mungall</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">PERSON:Melanie Courtot</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">GROUP:OBO Foundry <http://obofoundry.org/></obo:IAO_0000119>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/iao.owl"/>
<rdfs:label xml:lang="en">OBO foundry unique label</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000596 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000596">
<obo:IAO_0000111 xml:lang="en">has ID digit count</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">Ontology: <http://purl.obolibrary.org/obo/ro/idrange/>
Annotations:
'has ID prefix': "http://purl.obolibrary.org/obo/RO_"
'has ID digit count' : 7,
rdfs:label "RO id policy"
'has ID policy for': "RO"</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">Relates an ontology used to record id policy to the number of digits in the URI. The URI is: the 'has ID prefix" annotation property value concatenated with an integer in the id range (left padded with "0"s to make this many digits)</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Person:Alan Ruttenberg</obo:IAO_0000117>
<rdfs:label xml:lang="en">has ID digit count</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000597 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000597">
<obo:IAO_0000111 xml:lang="en">has ID range allocated</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">Datatype: idrange:1
Annotations: 'has ID range allocated to': "Chris Mungall"
EquivalentTo: xsd:integer[> 2151 , <= 2300]
</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">Relates a datatype that encodes a range of integers to the name of the person or organization who can use those ids constructed in that range to define new terms</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Person:Alan Ruttenberg</obo:IAO_0000117>
<rdfs:label xml:lang="en">has ID range allocated to</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000598 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000598">
<obo:IAO_0000111 xml:lang="en">has ID policy for</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">Ontology: <http://purl.obolibrary.org/obo/ro/idrange/>
Annotations:
'has ID prefix': "http://purl.obolibrary.org/obo/RO_"
'has ID digit count' : 7,
rdfs:label "RO id policy"
'has ID policy for': "RO"</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">Relating an ontology used to record id policy to the ontology namespace whose policy it manages</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Person:Alan Ruttenberg</obo:IAO_0000117>
<rdfs:label xml:lang="en">has ID policy for</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000599 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000599">
<obo:IAO_0000111 xml:lang="en">has ID prefix</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">Ontology: <http://purl.obolibrary.org/obo/ro/idrange/>
Annotations:
'has ID prefix': "http://purl.obolibrary.org/obo/RO_"
'has ID digit count' : 7,
rdfs:label "RO id policy"
'has ID policy for': "RO"</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">Relates an ontology used to record id policy to a prefix concatenated with an integer in the id range (left padded with "0"s to make this many digits) to construct an ID for a term being created.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Person:Alan Ruttenberg</obo:IAO_0000117>
<rdfs:label xml:lang="en">has ID prefix</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000600 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000600">
<obo:IAO_0000111 xml:lang="en">elucidation</obo:IAO_0000111>
<obo:IAO_0000117 xml:lang="en">person:Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">Person:Barry Smith</obo:IAO_0000119>
<obo:IAO_0000600 xml:lang="en">Primitive terms in a highest-level ontology such as BFO are terms which are so basic to our understanding of reality that there is no way of defining them in a non-circular fashion. For these, therefore, we can provide only elucidations, supplemented by examples and by axioms</obo:IAO_0000600>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/iao.owl"/>
<rdfs:label xml:lang="en">elucidation</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000601 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000601">
<obo:IAO_0000111 xml:lang="en">has associated axiom(nl)</obo:IAO_0000111>
<obo:IAO_0000117 xml:lang="en">Person:Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">Person:Alan Ruttenberg</obo:IAO_0000119>
<obo:IAO_0000600 xml:lang="en">An axiom associated with a term expressed using natural language</obo:IAO_0000600>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/iao.owl"/>
<rdfs:label xml:lang="en">has associated axiom(nl)</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000602 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000602">
<obo:IAO_0000111 xml:lang="en">has associated axiom(fol)</obo:IAO_0000111>
<obo:IAO_0000117 xml:lang="en">Person:Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">Person:Alan Ruttenberg</obo:IAO_0000119>
<obo:IAO_0000600 xml:lang="en">An axiom expressed in first order logic using CLIF syntax</obo:IAO_0000600>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/iao.owl"/>
<rdfs:label xml:lang="en">has associated axiom(fol)</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000603 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000603">
<obo:IAO_0000111 xml:lang="en">is allocated id range</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">Relates an ontology IRI to an (inclusive) range of IRIs in an OBO name space. The range is give as, e.g. "IAO_0020000-IAO_0020999"</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON:Alan Ruttenberg</obo:IAO_0000117>
<rdfs:comment xml:lang="en">Add as annotation triples in the granting ontology</rdfs:comment>
<rdfs:label xml:lang="en">is allocated id range</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000700 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000700">
<obo:IAO_0000111 xml:lang="en">has ontology root term</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">Ontology annotation property. Relates an ontology to a term that is a designated root term of the ontology. Display tools like OLS can use terms annotated with this property as the starting point for rendering the ontology class hierarchy. There can be more than one root.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Nicolas Matentzoglu</obo:IAO_0000117>
<rdfs:label xml:lang="en">has ontology root term</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0006011 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0006011">
<obo:IAO_0000111 xml:lang="en">may be identical to</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">A annotation relationship between two terms in an ontology that may refer to the same (natural) type but where more evidence is required before terms are merged.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">David Osumi-Sutherland</obo:IAO_0000117>
<obo:IAO_0000233 xml:lang="en">#40</obo:IAO_0000233>
<obo:IAO_0000234 xml:lang="en">VFB</obo:IAO_0000234>
<rdfs:comment xml:lang="en">Edges asserting this should be annotated with to record evidence supporting the assertion and its provenance.</rdfs:comment>
<rdfs:label xml:lang="en">may be identical to</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0006012 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0006012">
<obo:IAO_0000111 xml:lang="en">scheduled for obsoletion on or after</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">Used when the class or object is scheduled for obsoletion/deprecation on or after a particular date.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Chris Mungall, Jie Zheng</obo:IAO_0000117>
<obo:IAO_0000233 xml:lang="en">https://github.com/geneontology/go-ontology/issues/15532</obo:IAO_0000233>
<obo:IAO_0000233 xml:lang="en">https://github.com/information-artifact-ontology/ontology-metadata/issues/32</obo:IAO_0000233>
<obo:IAO_0000234 xml:lang="en">GO ontology</obo:IAO_0000234>
<rdfs:label xml:lang="en">scheduled for obsoletion on or after</rdfs:label>
<rdfs:range rdf:resource="http://www.w3.org/2001/XMLSchema#dateTime"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0010000 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0010000">
<obo:IAO_0000111 xml:lang="en">has axiom id</obo:IAO_0000111>
<obo:IAO_0000117 xml:lang="en">Person:Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">Person:Alan Ruttenberg</obo:IAO_0000119>
<obo:IAO_0000600 xml:lang="en">A URI that is intended to be unique label for an axiom used for tracking change to the ontology. For an axiom expressed in different languages, each expression is given the same URI</obo:IAO_0000600>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/iao.owl"/>
<rdfs:label xml:lang="en">has axiom label</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0100001 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0100001">
<obo:IAO_0000111 xml:lang="en">term replaced by</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
<obo:IAO_0000115 xml:lang="en">Use on obsolete terms, relating the term to another term that can be used as a substitute</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Person:Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">Person:Alan Ruttenberg</obo:IAO_0000119>
<rdfs:comment xml:lang="en">Add as annotation triples in the granting ontology</rdfs:comment>
<rdfs:label xml:lang="en">term replaced by</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_created_by -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_created_by"/>
<!-- http://purl.obolibrary.org/obo/IAO_creation_date -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_creation_date"/>
<!-- http://purl.obolibrary.org/obo/RO_0001900 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0001900">
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ro.owl"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002161 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002161">
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ro.owl"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002575 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002575">
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ro.owl"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002581 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002581">
<obo:IAO_0000115>If R <- P o Q is a defining property chain axiom, then it also holds that R -> P o Q. Note that this cannot be expressed directly in OWL</obo:IAO_0000115>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ro.owl"/>
<rdfs:label>is a defining property chain axiom</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002582 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002582">
<obo:IAO_0000115>If R <- P o Q is a defining property chain axiom, then (1) R -> P o Q holds and (2) Q is either reflexive or locally reflexive. A corollary of this is that P SubPropertyOf R.</obo:IAO_0000115>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ro.owl"/>
<rdfs:label>is a defining property chain axiom where second argument is reflexive</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002604 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002604">
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ro.owl"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0004049 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0004049">
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ro.owl"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0004050 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0004050">
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ro.owl"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0040042 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0040042">
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ro.owl"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/STATO_0000032 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/STATO_0000032">
<obo:IAO_0000115 xml:lang="en">an alternative term used for STATO statistical ontology and ISA team</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Alejandra Gonzalez-Beltran</obo:IAO_0000117>
<obo:IAO_0000117>Orlaith Burke</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">Philippe Rocca-Serra</obo:IAO_0000117>
<rdfs:label xml:lang="en">STATO alternative term</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/ncbitaxon#has_rank -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/ncbitaxon#has_rank">
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon.owl"/>
</owl:AnnotationProperty>
<!-- http://purl.org/dc/elements/1.1/contributor -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/elements/1.1/contributor"/>
<!-- http://purl.org/dc/elements/1.1/coverage -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/elements/1.1/coverage"/>
<!-- http://purl.org/dc/elements/1.1/creator -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/elements/1.1/creator"/>
<!-- http://purl.org/dc/elements/1.1/date -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/elements/1.1/date"/>
<!-- http://purl.org/dc/elements/1.1/description -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/elements/1.1/description"/>
<!-- http://purl.org/dc/elements/1.1/format -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/elements/1.1/format"/>
<!-- http://purl.org/dc/elements/1.1/identifier -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/elements/1.1/identifier"/>
<!-- http://purl.org/dc/elements/1.1/language -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/elements/1.1/language"/>
<!-- http://purl.org/dc/elements/1.1/license -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/elements/1.1/license"/>
<!-- http://purl.org/dc/elements/1.1/publisher -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/elements/1.1/publisher"/>
<!-- http://purl.org/dc/elements/1.1/relation -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/elements/1.1/relation"/>
<!-- http://purl.org/dc/elements/1.1/rights -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/elements/1.1/rights"/>
<!-- http://purl.org/dc/elements/1.1/source -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/elements/1.1/source">
<rdfs:isDefinedBy rdf:resource="http://purl.org/dc/elements/1.1.owl"/>
</owl:AnnotationProperty>
<!-- http://purl.org/dc/elements/1.1/subject -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/elements/1.1/subject"/>
<!-- http://purl.org/dc/elements/1.1/title -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/elements/1.1/title"/>
<!-- http://purl.org/dc/elements/1.1/type -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/elements/1.1/type"/>
<!-- http://purl.org/dc/terms/creator -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/terms/creator">
<rdfs:isDefinedBy rdf:resource="http://purl.org/dc/terms.owl"/>
</owl:AnnotationProperty>
<!-- http://purl.org/dc/terms/license -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/terms/license"/>
<!-- http://purl.org/dc/terms/source -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/terms/source">
<rdfs:isDefinedBy rdf:resource="http://purl.org/dc/terms.owl"/>
</owl:AnnotationProperty>
<!-- http://swrl.stanford.edu/ontologies/3.3/swrla.owl#isRuleEnabled -->
<owl:AnnotationProperty rdf:about="http://swrl.stanford.edu/ontologies/3.3/swrla.owl#isRuleEnabled">
<rdfs:isDefinedBy rdf:resource="http://swrl.stanford.edu/ontologies/3.3/swrla.owl"/>
</owl:AnnotationProperty>
<!-- http://www.geneontology.org/formats/oboInOwl#created_by -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#created_by">
<rdfs:isDefinedBy rdf:resource="http://www.geneontology.org/formats/oboinowl.owl"/>
</owl:AnnotationProperty>
<!-- http://www.geneontology.org/formats/oboInOwl#creation_date -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#creation_date">
<rdfs:isDefinedBy rdf:resource="http://www.geneontology.org/formats/oboinowl.owl"/>
</owl:AnnotationProperty>
<!-- http://www.geneontology.org/formats/oboInOwl#hasAlternativeId -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasAlternativeId">
<rdfs:isDefinedBy rdf:resource="http://www.geneontology.org/formats/oboinowl.owl"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">has_alternative_id</rdfs:label>
</owl:AnnotationProperty>
<!-- http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym"/>
<!-- http://www.geneontology.org/formats/oboInOwl#hasDbXref -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasDbXref">
<rdfs:isDefinedBy rdf:resource="http://www.geneontology.org/formats/oboinowl.owl"/>
<rdfs:label>database_cross_reference</rdfs:label>
</owl:AnnotationProperty>
<!-- http://www.geneontology.org/formats/oboInOwl#hasExactSynonym -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym">
<rdfs:isDefinedBy rdf:resource="http://www.geneontology.org/formats/oboinowl.owl"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">has_exact_synonym</rdfs:label>
</owl:AnnotationProperty>
<!-- http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym">
<rdfs:isDefinedBy rdf:resource="http://www.geneontology.org/formats/oboinowl.owl"/>
</owl:AnnotationProperty>
<!-- http://www.geneontology.org/formats/oboInOwl#hasOBONamespace -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasOBONamespace">
<rdfs:isDefinedBy rdf:resource="http://www.geneontology.org/formats/oboinowl.owl"/>
</owl:AnnotationProperty>
<!-- http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym">
<rdfs:isDefinedBy rdf:resource="http://www.geneontology.org/formats/oboinowl.owl"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">has_related_synonym</rdfs:label>
</owl:AnnotationProperty>
<!-- http://www.geneontology.org/formats/oboInOwl#hasSynonymType -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasSynonymType">
<rdfs:isDefinedBy rdf:resource="http://www.geneontology.org/formats/oboinowl.owl"/>
</owl:AnnotationProperty>
<!-- http://www.geneontology.org/formats/oboInOwl#id -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#id">
<rdfs:isDefinedBy rdf:resource="http://www.geneontology.org/formats/oboinowl.owl"/>
</owl:AnnotationProperty>
<!-- http://www.geneontology.org/formats/oboInOwl#inSubset -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#inSubset">
<rdfs:isDefinedBy rdf:resource="http://www.geneontology.org/formats/oboinowl.owl"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">in_subset</rdfs:label>
</owl:AnnotationProperty>
<!-- http://www.geneontology.org/formats/oboInOwl#is_metadata_tag -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#is_metadata_tag"/>
<!-- http://www.geneontology.org/formats/oboInOwl#shorthand -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#shorthand">
<rdfs:isDefinedBy rdf:resource="http://www.geneontology.org/formats/oboinowl.owl"/>
</owl:AnnotationProperty>
<!-- http://www.w3.org/2000/01/rdf-schema#comment -->
<owl:AnnotationProperty rdf:about="http://www.w3.org/2000/01/rdf-schema#comment">
<rdfs:isDefinedBy rdf:resource="http://www.w3.org/2000/01/rdf-schema.owl"/>
</owl:AnnotationProperty>
<!-- http://www.w3.org/2000/01/rdf-schema#isDefinedBy -->
<owl:AnnotationProperty rdf:about="http://www.w3.org/2000/01/rdf-schema#isDefinedBy">
<rdfs:isDefinedBy rdf:resource="http://www.w3.org/2000/01/rdf-schema.owl"/>
</owl:AnnotationProperty>
<!-- http://www.w3.org/2000/01/rdf-schema#label -->
<owl:AnnotationProperty rdf:about="http://www.w3.org/2000/01/rdf-schema#label">
<obo:IAO_0000111>label</obo:IAO_0000111>
<rdfs:isDefinedBy rdf:resource="http://www.w3.org/2000/01/rdf-schema.owl"/>
<rdfs:label>label</rdfs:label>
</owl:AnnotationProperty>
<!-- http://www.w3.org/2000/01/rdf-schema#seeAlso -->
<rdf:Description rdf:about="http://www.w3.org/2000/01/rdf-schema#seeAlso">
<rdfs:isDefinedBy rdf:resource="http://www.w3.org/2000/01/rdf-schema.owl"/>
</rdf:Description>
<!-- http://xmlns.com/foaf/0.1/page -->
<owl:AnnotationProperty rdf:about="http://xmlns.com/foaf/0.1/page">
<rdfs:isDefinedBy rdf:resource="http://xmlns.com/foaf/0.1.owl"/>
</owl:AnnotationProperty>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Datatypes
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://www.w3.org/1999/02/22-rdf-syntax-ns#PlainLiteral -->
<rdf:Description rdf:about="http://www.w3.org/1999/02/22-rdf-syntax-ns#PlainLiteral">
<rdfs:isDefinedBy rdf:resource="http://www.w3.org/1999/02/22-rdf-syntax-ns.owl"/>
</rdf:Description>
<!-- http://www.w3.org/2001/XMLSchema#anyURI -->
<rdf:Description rdf:about="http://www.w3.org/2001/XMLSchema#anyURI">
<rdfs:isDefinedBy rdf:resource="http://www.w3.org/2001/xmlschema.owl"/>
</rdf:Description>
<!-- http://www.w3.org/2001/XMLSchema#boolean -->
<rdf:Description rdf:about="http://www.w3.org/2001/XMLSchema#boolean">
<rdfs:isDefinedBy rdf:resource="http://www.w3.org/2001/xmlschema.owl"/>
</rdf:Description>
<!-- http://www.w3.org/2001/XMLSchema#dateTime -->
<rdf:Description rdf:about="http://www.w3.org/2001/XMLSchema#dateTime">
<rdfs:isDefinedBy rdf:resource="http://www.w3.org/2001/xmlschema.owl"/>
</rdf:Description>
<!-- http://www.w3.org/2001/XMLSchema#string -->
<rdf:Description rdf:about="http://www.w3.org/2001/XMLSchema#string">
<rdfs:isDefinedBy rdf:resource="http://www.w3.org/2001/xmlschema.owl"/>
</rdf:Description>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Object Properties
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://purl.obolibrary.org/obo/BFO_0000050 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/BFO_0000050">
<owl:inverseOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000051"/>
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#TransitiveProperty"/>
<obo:IAO_0000111 xml:lang="en">is part of</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">my brain is part of my body (continuant parthood, two material entities)</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">my stomach cavity is part of my stomach (continuant parthood, immaterial entity is part of material entity)</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">this day is part of this year (occurrent parthood)</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">a core relation that holds between a part and its whole</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">Everything is part of itself. Any part of any part of a thing is itself part of that thing. Two distinct things cannot be part of each other.</obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime</obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.)
A continuant cannot be part of an occurrent: use 'participates in'. An occurrent cannot be part of a continuant: use 'has participant'. A material entity cannot be part of an immaterial entity: use 'has location'. A specifically dependent continuant cannot be part of an independent continuant: use 'inheres in'. An independent continuant cannot be part of a specifically dependent continuant: use 'bearer of'.</obo:IAO_0000116>
<obo:IAO_0000118 xml:lang="en">part_of</obo:IAO_0000118>
<obo:RO_0001900 rdf:resource="http://purl.obolibrary.org/obo/RO_0001901"/>
<rdfs:label xml:lang="en">part of</rdfs:label>
<rdfs:seeAlso>http://www.obofoundry.org/ro/#OBO_REL:part_of</rdfs:seeAlso>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/BFO_0000051 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/BFO_0000051">
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#TransitiveProperty"/>
<obo:IAO_0000111 xml:lang="en">has part</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">my body has part my brain (continuant parthood, two material entities)</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">my stomach has part my stomach cavity (continuant parthood, material entity has part immaterial entity)</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">this year has part this day (occurrent parthood)</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">a core relation that holds between a whole and its part</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">Everything has itself as a part. Any part of any part of a thing is itself part of that thing. Two distinct things cannot have each other as a part.</obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime</obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">Parthood requires the part and the whole to have compatible classes: only an occurrent have an occurrent as part; only a process can have a process as part; only a continuant can have a continuant as part; only an independent continuant can have an independent continuant as part; only a specifically dependent continuant can have a specifically dependent continuant as part; only a generically dependent continuant can have a generically dependent continuant as part. (This list is not exhaustive.)
A continuant cannot have an occurrent as part: use 'participates in'. An occurrent cannot have a continuant as part: use 'has participant'. An immaterial entity cannot have a material entity as part: use 'location of'. An independent continuant cannot have a specifically dependent continuant as part: use 'bearer of'. A specifically dependent continuant cannot have an independent continuant as part: use 'inheres in'.</obo:IAO_0000116>
<obo:IAO_0000118 xml:lang="en">has_part</obo:IAO_0000118>
<obo:RO_0001900 rdf:resource="http://purl.obolibrary.org/obo/RO_0001901"/>
<rdfs:label xml:lang="en">has part</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/BFO_0000054 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/BFO_0000054">
<owl:inverseOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000055"/>
<rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/BFO_0000017"/>
<rdfs:range rdf:resource="http://purl.obolibrary.org/obo/BFO_0000015"/>
<obo:IAO_0000111 xml:lang="en">realized in</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">this disease is realized in this disease course</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">this fragility is realized in this shattering</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">this investigator role is realized in this investigation</obo:IAO_0000112>
<obo:IAO_0000118 xml:lang="en">is realized by</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">realized_in</obo:IAO_0000118>
<obo:IAO_0000600 xml:lang="en">[copied from inverse property 'realizes'] to say that b realizes c at t is to assert that there is some material entity d & b is a process which has participant d at t & c is a disposition or role of which d is bearer_of at t& the type instantiated by b is correlated with the type instantiated by c. (axiom label in BFO2 Reference: [059-003])</obo:IAO_0000600>
<rdfs:comment>Paraphrase of elucidation: a relation between a realizable entity and a process, where there is some material entity that is bearer of the realizable entity and participates in the process, and the realizable entity comes to be realized in the course of the process</rdfs:comment>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/bfo.owl"/>
<rdfs:label xml:lang="en">realized in</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/BFO_0000055 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/BFO_0000055">
<rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/BFO_0000015"/>
<rdfs:range rdf:resource="http://purl.obolibrary.org/obo/BFO_0000017"/>
<obo:IAO_0000111 xml:lang="en">realizes</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">this disease course realizes this disease</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">this investigation realizes this investigator role</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">this shattering realizes this fragility</obo:IAO_0000112>
<obo:IAO_0000600 xml:lang="en">to say that b realizes c at t is to assert that there is some material entity d & b is a process which has participant d at t & c is a disposition or role of which d is bearer_of at t& the type instantiated by b is correlated with the type instantiated by c. (axiom label in BFO2 Reference: [059-003])</obo:IAO_0000600>
<rdfs:comment>Paraphrase of elucidation: a relation between a process and a realizable entity, where there is some material entity that is bearer of the realizable entity and participates in the process, and the realizable entity comes to be realized in the course of the process</rdfs:comment>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/iao.owl"/>
<rdfs:label xml:lang="en">realizes</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/BFO_0000062 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/BFO_0000062">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002086"/>
<owl:inverseOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000063"/>
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#TransitiveProperty"/>
<rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/BFO_0000003"/>
<rdfs:range rdf:resource="http://purl.obolibrary.org/obo/BFO_0000003"/>
<obo:IAO_0000111 xml:lang="en">preceded by</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">x is preceded by y if and only if the time point at which y ends is before or equivalent to the time point at which x starts. Formally: x preceded by y iff ω(y) <= α(x), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">An example is: translation preceded_by transcription; aging preceded_by development (not however death preceded_by aging). Where derives_from links classes of continuants, preceded_by links classes of processes. Clearly, however, these two relations are not independent of each other. Thus if cells of type C1 derive_from cells of type C, then any cell division involving an instance of C1 in a given lineage is preceded_by cellular processes involving an instance of C. The assertion P preceded_by P1 tells us something about Ps in general: that is, it tells us something about what happened earlier, given what we know about what happened later. Thus it does not provide information pointing in the opposite direction, concerning instances of P1 in general; that is, that each is such as to be succeeded by some instance of P. Note that an assertion to the effect that P preceded_by P1 is rather weak; it tells us little about the relations between the underlying instances in virtue of which the preceded_by relation obtains. Typically we will be interested in stronger relations, for example in the relation immediately_preceded_by, or in relations which combine preceded_by with a condition to the effect that the corresponding instances of P and P1 share participants, or that their participants are connected by relations of derivation, or (as a first step along the road to a treatment of causality) that the one process in some way affects (for example, initiates or regulates) the other.</obo:IAO_0000116>
<obo:IAO_0000118 xml:lang="en">is preceded by</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">preceded_by</obo:IAO_0000118>
<dc:source>http://www.obofoundry.org/ro/#OBO_REL:preceded_by</dc:source>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/ro/subsets#ro-eco"/>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/bfo.owl"/>
<rdfs:label xml:lang="en">preceded by</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/BFO_0000063 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/BFO_0000063">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002222"/>
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#TransitiveProperty"/>
<rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/BFO_0000003"/>
<rdfs:range rdf:resource="http://purl.obolibrary.org/obo/BFO_0000003"/>
<obo:IAO_0000111 xml:lang="en">precedes</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">x precedes y if and only if the time point at which x ends is before or equivalent to the time point at which y starts. Formally: x precedes y iff ω(x) <= α(y), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point.</obo:IAO_0000115>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/ro/subsets#ro-eco"/>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/bfo.owl"/>
<rdfs:label xml:lang="en">precedes</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/BFO_0000066 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/BFO_0000066">
<owl:inverseOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000067"/>
<rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/BFO_0000003"/>
<rdfs:range rdf:resource="http://purl.obolibrary.org/obo/BFO_0000004"/>
<owl:propertyChainAxiom rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BFO_0000050"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BFO_0000066"/>
</owl:propertyChainAxiom>
<owl:propertyChainAxiom rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BFO_0000066"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BFO_0000050"/>
</owl:propertyChainAxiom>
<obo:IAO_0000111 xml:lang="en">occurs in</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t</obo:IAO_0000115>
<obo:IAO_0000118 xml:lang="en">occurs_in</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">unfolds in</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">unfolds_in</obo:IAO_0000118>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/valid_for_go_annotation_extension"/>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/valid_for_go_ontology"/>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/valid_for_gocam"/>
<rdfs:comment>Paraphrase of definition: a relation between a process and an independent continuant, in which the process takes place entirely within the independent continuant</rdfs:comment>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/bfo.owl"/>
<rdfs:label xml:lang="en">occurs in</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/BFO_0000067 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/BFO_0000067">
<obo:IAO_0000111 xml:lang="en">site of</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">[copied from inverse property 'occurs in'] b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t</obo:IAO_0000115>
<rdfs:comment>Paraphrase of definition: a relation between an independent continuant and a process, in which the process takes place entirely within the independent continuant</rdfs:comment>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/bfo.owl"/>
<rdfs:label xml:lang="en">contains process</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000136 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000136">
<obo:IAO_0000112 xml:lang="en">This document is about information artifacts and their representations</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
<obo:IAO_0000115 xml:lang="en">A (currently) primitive relation that relates an information artifact to an entity.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">7/6/2009 Alan Ruttenberg. Following discussion with Jonathan Rees, and introduction of "mentions" relation. Weaken the is_about relationship to be primitive.
We will try to build it back up by elaborating the various subproperties that are more precisely defined.
Some currently missing phenomena that should be considered "about" are predications - "The only person who knows the answer is sitting beside me" , Allegory, Satire, and other literary forms that can be topical without explicitly mentioning the topic.</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">person:Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">Smith, Ceusters, Ruttenberg, 2000 years of philosophy</obo:IAO_0000119>
<rdfs:label xml:lang="en">is about</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/PCO_0000055 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/PCO_0000055">
<obo:IAO_0000231 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000103"/>
<rdfs:label xml:lang="en">obsolete has member of</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0000052 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0000052">
<owl:inverseOf rdf:resource="http://purl.obolibrary.org/obo/RO_0000053"/>
<obo:IAO_0000111 xml:lang="en">inheres in</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">this fragility inheres in this vase</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">this red color inheres in this apple</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">a relation between a specifically dependent continuant (the dependent) and an independent continuant (the bearer), in which the dependent specifically depends on the bearer for its existence</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">A dependent inheres in its bearer at all times for which the dependent exists.</obo:IAO_0000116>
<obo:IAO_0000118 xml:lang="en">inheres_in</obo:IAO_0000118>
<obo:RO_0001900 rdf:resource="http://purl.obolibrary.org/obo/RO_0001901"/>
<rdfs:label xml:lang="en">inheres in</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0000053 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0000053">
<rdfs:range rdf:resource="http://purl.obolibrary.org/obo/BFO_0000020"/>
<obo:IAO_0000111 xml:lang="en">bearer of</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">this apple is bearer of this red color</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">this vase is bearer of this fragility</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">a relation between an independent continuant (the bearer) and a specifically dependent continuant (the dependent), in which the dependent specifically depends on the bearer for its existence</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">A bearer can have many dependents, and its dependents can exist for different periods of time, but none of its dependents can exist when the bearer does not exist.</obo:IAO_0000116>
<obo:IAO_0000118 xml:lang="en">bearer_of</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">is bearer of</obo:IAO_0000118>
<obo:RO_0001900 rdf:resource="http://purl.obolibrary.org/obo/RO_0001901"/>
<rdfs:label xml:lang="en">bearer of</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0000056 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0000056">
<owl:inverseOf rdf:resource="http://purl.obolibrary.org/obo/RO_0000057"/>
<rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/BFO_0000002"/>
<rdfs:range rdf:resource="http://purl.obolibrary.org/obo/BFO_0000003"/>
<obo:IAO_0000111 xml:lang="en">participates in</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">this blood clot participates in this blood coagulation</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">this input material (or this output material) participates in this process</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">this investigator participates in this investigation</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">a relation between a continuant and a process, in which the continuant is somehow involved in the process</obo:IAO_0000115>
<obo:IAO_0000118 xml:lang="en">participates_in</obo:IAO_0000118>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ro.owl"/>
<rdfs:label xml:lang="en">participates in</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0000057 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0000057">
<rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/BFO_0000003"/>
<rdfs:range rdf:resource="http://purl.obolibrary.org/obo/BFO_0000002"/>
<obo:IAO_0000111 xml:lang="en">has participant</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">this blood coagulation has participant this blood clot</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">this investigation has participant this investigator</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">this process has participant this input material (or this output material)</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">a relation between a process and a continuant, in which the continuant is somehow involved in the process</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">Has_participant is a primitive instance-level relation between a process, a continuant, and a time at which the continuant participates in some way in the process. The relation obtains, for example, when this particular process of oxygen exchange across this particular alveolar membrane has_participant this particular sample of hemoglobin at this particular time.</obo:IAO_0000116>
<obo:IAO_0000118 xml:lang="en">has_participant</obo:IAO_0000118>
<dc:source>http://www.obofoundry.org/ro/#OBO_REL:has_participant</dc:source>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ro.owl"/>
<rdfs:label xml:lang="en">has participant</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0000058 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0000058">
<owl:inverseOf rdf:resource="http://purl.obolibrary.org/obo/RO_0000059"/>
<rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/BFO_0000031"/>
<rdfs:range rdf:resource="http://purl.obolibrary.org/obo/BFO_0000020"/>
<obo:IAO_0000112 xml:lang="en">A journal article is an information artifact that inheres in some number of printed journals. For each copy of the printed journal there is some quality that carries the journal article, such as a pattern of ink. The journal article (a generically dependent continuant) is concretized as the quality (a specifically dependent continuant), and both depend on that copy of the printed journal (an independent continuant).</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">An investigator reads a protocol and forms a plan to carry out an assay. The plan is a realizable entity (a specifically dependent continuant) that concretizes the protocol (a generically dependent continuant), and both depend on the investigator (an independent continuant). The plan is then realized by the assay (a process).</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">A relationship between a generically dependent continuant and a specifically dependent continuant, in which the generically dependent continuant depends on some independent continuant in virtue of the fact that the specifically dependent continuant also depends on that same independent continuant. A generically dependent continuant may be concretized as multiple specifically dependent continuants.</obo:IAO_0000115>
<rdfs:label xml:lang="en">is concretized as</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0000059 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0000059">
<rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/BFO_0000020"/>
<rdfs:range rdf:resource="http://purl.obolibrary.org/obo/BFO_0000031"/>
<obo:IAO_0000112 xml:lang="en">A journal article is an information artifact that inheres in some number of printed journals. For each copy of the printed journal there is some quality that carries the journal article, such as a pattern of ink. The quality (a specifically dependent continuant) concretizes the journal article (a generically dependent continuant), and both depend on that copy of the printed journal (an independent continuant).</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">An investigator reads a protocol and forms a plan to carry out an assay. The plan is a realizable entity (a specifically dependent continuant) that concretizes the protocol (a generically dependent continuant), and both depend on the investigator (an independent continuant). The plan is then realized by the assay (a process).</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">A relationship between a specifically dependent continuant and a generically dependent continuant, in which the generically dependent continuant depends on some independent continuant in virtue of the fact that the specifically dependent continuant also depends on that same independent continuant. Multiple specifically dependent continuants can concretize the same generically dependent continuant.</obo:IAO_0000115>
<rdfs:label xml:lang="en">concretizes</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0000079 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0000079">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0000052"/>
<owl:inverseOf rdf:resource="http://purl.obolibrary.org/obo/RO_0000085"/>
<rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/BFO_0000034"/>
<obo:IAO_0000112 xml:lang="en">this catalysis function is a function of this enzyme</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">a relation between a function and an independent continuant (the bearer), in which the function specifically depends on the bearer for its existence</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">A function inheres in its bearer at all times for which the function exists, however the function need not be realized at all the times that the function exists.</obo:IAO_0000116>
<obo:IAO_0000118 xml:lang="en">function_of</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">is function of</obo:IAO_0000118>
<rdfs:label xml:lang="en">function of</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0000080 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0000080">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0000052"/>
<owl:inverseOf rdf:resource="http://purl.obolibrary.org/obo/RO_0000086"/>
<obo:IAO_0000112 xml:lang="en">this red color is a quality of this apple</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">a relation between a quality and an independent continuant (the bearer), in which the quality specifically depends on the bearer for its existence</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">A quality inheres in its bearer at all times for which the quality exists.</obo:IAO_0000116>
<obo:IAO_0000118 xml:lang="en">is quality of</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">quality_of</obo:IAO_0000118>
<rdfs:label xml:lang="en">quality of</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0000081 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0000081">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0000052"/>
<owl:inverseOf rdf:resource="http://purl.obolibrary.org/obo/RO_0000087"/>
<obo:IAO_0000112 xml:lang="en">this investigator role is a role of this person</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">a relation between a role and an independent continuant (the bearer), in which the role specifically depends on the bearer for its existence</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">A role inheres in its bearer at all times for which the role exists, however the role need not be realized at all the times that the role exists.</obo:IAO_0000116>
<obo:IAO_0000118 xml:lang="en">is role of</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">role_of</obo:IAO_0000118>
<rdfs:label xml:lang="en">role of</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0000085 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0000085">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0000053"/>
<rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/BFO_0000004"/>
<rdfs:range rdf:resource="http://purl.obolibrary.org/obo/BFO_0000034"/>
<obo:IAO_0000112 xml:lang="en">this enzyme has function this catalysis function (more colloquially: this enzyme has this catalysis function)</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">a relation between an independent continuant (the bearer) and a function, in which the function specifically depends on the bearer for its existence</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">A bearer can have many functions, and its functions can exist for different periods of time, but none of its functions can exist when the bearer does not exist. A function need not be realized at all the times that the function exists.</obo:IAO_0000116>
<obo:IAO_0000118 xml:lang="en">has_function</obo:IAO_0000118>
<rdfs:label xml:lang="en">has function</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0000086 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0000086">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0000053"/>
<rdfs:range rdf:resource="http://purl.obolibrary.org/obo/BFO_0000019"/>
<obo:IAO_0000112 xml:lang="en">this apple has quality this red color</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">a relation between an independent continuant (the bearer) and a quality, in which the quality specifically depends on the bearer for its existence</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">A bearer can have many qualities, and its qualities can exist for different periods of time, but none of its qualities can exist when the bearer does not exist.</obo:IAO_0000116>
<obo:IAO_0000118 xml:lang="en">has_quality</obo:IAO_0000118>
<rdfs:label xml:lang="en">has quality</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0000087 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0000087">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0000053"/>
<rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/BFO_0000004"/>
<rdfs:range rdf:resource="http://purl.obolibrary.org/obo/BFO_0000023"/>
<obo:IAO_0000112 xml:lang="en">this person has role this investigator role (more colloquially: this person has this role of investigator)</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">a relation between an independent continuant (the bearer) and a role, in which the role specifically depends on the bearer for its existence</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">A bearer can have many roles, and its roles can exist for different periods of time, but none of its roles can exist when the bearer does not exist. A role need not be realized at all the times that the role exists.</obo:IAO_0000116>
<obo:IAO_0000118 xml:lang="en">has_role</obo:IAO_0000118>
<rdfs:label xml:lang="en">has role</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0000091 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0000091">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0000053"/>
<owl:inverseOf rdf:resource="http://purl.obolibrary.org/obo/RO_0000092"/>
<rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/BFO_0000004"/>
<rdfs:range rdf:resource="http://purl.obolibrary.org/obo/BFO_0000016"/>
<obo:IAO_0000115 xml:lang="en">a relation between an independent continuant (the bearer) and a disposition, in which the disposition specifically depends on the bearer for its existence</obo:IAO_0000115>
<rdfs:label xml:lang="en">has disposition</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0000092 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0000092">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0000052"/>
<rdfs:label xml:lang="en">disposition of</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0001000 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0001000">
<owl:inverseOf rdf:resource="http://purl.obolibrary.org/obo/RO_0001001"/>
<obo:IAO_0000112 xml:lang="en">this cell derives from this parent cell (cell division)</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">this nucleus derives from this parent nucleus (nuclear division)</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
<obo:IAO_0000115 xml:lang="en">a relation between two distinct material entities, the new entity and the old entity, in which the new entity begins to exist when the old entity ceases to exist, and the new entity inherits the significant portion of the matter of the old entity</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">This is a very general relation. More specific relations are preferred when applicable, such as 'directly develops from'.</obo:IAO_0000116>
<obo:IAO_0000118 xml:lang="en">derives_from</obo:IAO_0000118>
<rdfs:label xml:lang="en">derives from</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0001001 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0001001">
<obo:IAO_0000112 xml:lang="en">this parent cell derives into this cell (cell division)</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">this parent nucleus derives into this nucleus (nuclear division)</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
<obo:IAO_0000115 xml:lang="en">a relation between two distinct material entities, the old entity and the new entity, in which the new entity begins to exist when the old entity ceases to exist, and the new entity inherits the significant portion of the matter of the old entity</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">This is a very general relation. More specific relations are preferred when applicable, such as 'directly develops into'. To avoid making statements about a future that may not come to pass, it is often better to use the backward-looking 'derives from' rather than the forward-looking 'derives into'.</obo:IAO_0000116>
<obo:IAO_0000118 xml:lang="en">derives_into</obo:IAO_0000118>
<rdfs:label xml:lang="en">derives into</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0001015 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0001015">
<owl:inverseOf rdf:resource="http://purl.obolibrary.org/obo/RO_0001025"/>
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#TransitiveProperty"/>
<obo:IAO_0000111 xml:lang="en">is location of</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">my head is the location of my brain</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">this cage is the location of this rat</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">a relation between two independent continuants, the location and the target, in which the target is entirely within the location</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">Most location relations will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime</obo:IAO_0000116>
<obo:IAO_0000118 xml:lang="en">location_of</obo:IAO_0000118>
<obo:RO_0001900 rdf:resource="http://purl.obolibrary.org/obo/RO_0001901"/>
<rdfs:label xml:lang="en">location of</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0001025 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0001025">
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#TransitiveProperty"/>
<rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/BFO_0000004"/>
<rdfs:domain>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BFO_0000004"/>
<owl:Class>
<owl:complementOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000006"/>
</owl:Class>
</owl:intersectionOf>
</owl:Class>
</rdfs:domain>
<rdfs:range rdf:resource="http://purl.obolibrary.org/obo/BFO_0000004"/>
<rdfs:range>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BFO_0000004"/>
<owl:Class>
<owl:complementOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000006"/>
</owl:Class>
</owl:intersectionOf>
</owl:Class>
</rdfs:range>
<obo:IAO_0000111 xml:lang="en">located in</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">my brain is located in my head</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">this rat is located in this cage</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">a relation between two independent continuants, the target and the location, in which the target is entirely within the location</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">Location as a relation between instances: The primitive instance-level relation c located_in r at t reflects the fact that each continuant is at any given time associated with exactly one spatial region, namely its exact location. Following we can use this relation to define a further instance-level location relation - not between a continuant and the region which it exactly occupies, but rather between one continuant and another. c is located in c1, in this sense, whenever the spatial region occupied by c is part_of the spatial region occupied by c1. Note that this relation comprehends both the relation of exact location between one continuant and another which obtains when r and r1 are identical (for example, when a portion of fluid exactly fills a cavity), as well as those sorts of inexact location relations which obtain, for example, between brain and head or between ovum and uterus</obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">Most location relations will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime</obo:IAO_0000116>
<obo:IAO_0000118 xml:lang="en">located_in</obo:IAO_0000118>
<obo:RO_0001900 rdf:resource="http://purl.obolibrary.org/obo/RO_0001901"/>
<dc:source>http://www.obofoundry.org/ro/#OBO_REL:located_in</dc:source>
<rdfs:label xml:lang="en">located in</rdfs:label>
</owl:ObjectProperty>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/RO_0001025"/>
<owl:annotatedProperty rdf:resource="http://www.w3.org/2000/01/rdf-schema#range"/>
<owl:annotatedTarget rdf:resource="http://purl.obolibrary.org/obo/BFO_0000004"/>
<obo:IAO_0000116>This is redundant with the more specific 'independent and not spatial region' constraint. We leave in the redundant axiom for use with reasoners that do not use negation.</obo:IAO_0000116>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/RO_0001025"/>
<owl:annotatedProperty rdf:resource="http://www.w3.org/2000/01/rdf-schema#domain"/>
<owl:annotatedTarget rdf:resource="http://purl.obolibrary.org/obo/BFO_0000004"/>
<obo:IAO_0000116>This is redundant with the more specific 'independent and not spatial region' constraint. We leave in the redundant axiom for use with reasoners that do not use negation.</obo:IAO_0000116>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/RO_0002000 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002000">
<owl:inverseOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002002"/>
<obo:IAO_0000112 xml:lang="en">the surface of my skin is a 2D boundary of my body</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">a relation between a 2D immaterial entity (the boundary) and a material entity, in which the boundary delimits the material entity</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">A 2D boundary may have holes and gaps, but it must be a single connected entity, not an aggregate of several disconnected parts.</obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">Although the boundary is two-dimensional, it exists in three-dimensional space and thus has a 3D shape.</obo:IAO_0000116>
<obo:IAO_0000118 xml:lang="en">2D_boundary_of</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">boundary of</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">is 2D boundary of</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">is boundary of</obo:IAO_0000118>
<obo:RO_0001900 rdf:resource="http://purl.obolibrary.org/obo/RO_0001901"/>
<rdfs:label xml:lang="en">2D boundary of</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002002 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002002">
<rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
<rdfs:range rdf:resource="http://purl.obolibrary.org/obo/BFO_0000141"/>
<obo:IAO_0000112 xml:lang="en">my body has 2D boundary the surface of my skin</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">a relation between a material entity and a 2D immaterial entity (the boundary), in which the boundary delimits the material entity</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">A 2D boundary may have holes and gaps, but it must be a single connected entity, not an aggregate of several disconnected parts.</obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">Although the boundary is two-dimensional, it exists in three-dimensional space and thus has a 3D shape.</obo:IAO_0000116>
<obo:IAO_0000118 xml:lang="en">has boundary</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">has_2D_boundary</obo:IAO_0000118>
<obo:RO_0001900 rdf:resource="http://purl.obolibrary.org/obo/RO_0001901"/>
<rdfs:label xml:lang="en">has 2D boundary</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002022 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002022">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002334"/>
<owl:inverseOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002578"/>
<oboInOwl:created_by>dos</oboInOwl:created_by>
<oboInOwl:creation_date rdf:datatype="http://www.w3.org/2001/XMLSchema#dateTime">2017-09-17T13:52:24Z</oboInOwl:creation_date>
<rdfs:comment>Process(P2) is directly regulated by process(P1) iff: P1 regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding regulates the kinase activity (P2) of protein B then P1 directly regulates P2.</rdfs:comment>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ro.owl"/>
<rdfs:label>directly regulated by</rdfs:label>
</owl:ObjectProperty>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/RO_0002022"/>
<owl:annotatedProperty rdf:resource="http://www.w3.org/2000/01/rdf-schema#comment"/>
<owl:annotatedTarget>Process(P2) is directly regulated by process(P1) iff: P1 regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding regulates the kinase activity (P2) of protein B then P1 directly regulates P2.</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GOC:dos</oboInOwl:hasDbXref>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/RO_0002023 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002023">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002022"/>
<owl:inverseOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002630"/>
<obo:IAO_0000115>Process(P2) is directly negatively regulated by process(P1) iff: P1 negatively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding negatively regulates the kinase activity (P2) of protein B then P2 directly negatively regulated by P1.</obo:IAO_0000115>
<oboInOwl:created_by>dos</oboInOwl:created_by>
<oboInOwl:creation_date rdf:datatype="http://www.w3.org/2001/XMLSchema#dateTime">2017-09-17T13:52:38Z</oboInOwl:creation_date>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ro.owl"/>
<rdfs:label>directly negatively regulated by</rdfs:label>
</owl:ObjectProperty>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/RO_0002023"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget>Process(P2) is directly negatively regulated by process(P1) iff: P1 negatively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding negatively regulates the kinase activity (P2) of protein B then P2 directly negatively regulated by P1.</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GOC:dos</oboInOwl:hasDbXref>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/RO_0002024 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002024">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002022"/>
<owl:inverseOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002629"/>
<obo:IAO_0000115>Process(P2) is directly postively regulated by process(P1) iff: P1 positively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding positively regulates the kinase activity (P2) of protein B then P2 is directly postively regulated by P1.</obo:IAO_0000115>
<oboInOwl:created_by>dos</oboInOwl:created_by>
<oboInOwl:creation_date rdf:datatype="http://www.w3.org/2001/XMLSchema#dateTime">2017-09-17T13:52:47Z</oboInOwl:creation_date>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ro.owl"/>
<rdfs:label>directly positively regulated by</rdfs:label>
</owl:ObjectProperty>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/RO_0002024"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget>Process(P2) is directly postively regulated by process(P1) iff: P1 positively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding positively regulates the kinase activity (P2) of protein B then P2 is directly postively regulated by P1.</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GOC:dos</oboInOwl:hasDbXref>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/RO_0002086 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002086">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002222"/>
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#TransitiveProperty"/>
<obo:IAO_0000117>David Osumi-Sutherland</obo:IAO_0000117>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/ro/subsets#ro-eco"/>
<rdfs:comment xml:lang="en">X ends_after Y iff: end(Y) before_or_simultaneous_with end(X)</rdfs:comment>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ro.owl"/>
<rdfs:label xml:lang="en">ends after</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002087 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002087">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000062"/>
<owl:inverseOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002090"/>
<obo:IAO_0000117>David Osumi-Sutherland</obo:IAO_0000117>
<obo:IAO_0000118>starts_at_end_of</obo:IAO_0000118>
<rdfs:comment xml:lang="en">X immediately_preceded_by Y iff: end(X) simultaneous_with start(Y)</rdfs:comment>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ro.owl"/>
<rdfs:label xml:lang="en">immediately preceded by</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002090 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002090">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000063"/>
<obo:IAO_0000117>David Osumi-Sutherland</obo:IAO_0000117>
<obo:IAO_0000118>ends_at_start_of</obo:IAO_0000118>
<obo:IAO_0000118>meets</obo:IAO_0000118>
<obo:RO_0002575 rdf:resource="http://purl.obolibrary.org/obo/BFO_0000063"/>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/ro/subsets#ro-eco"/>
<rdfs:comment xml:lang="en">X immediately_precedes_Y iff: end(X) simultaneous_with start(Y)</rdfs:comment>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ro.owl"/>
<rdfs:label xml:lang="en">immediately precedes</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002131 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002131">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002323"/>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
<obo:IAO_0000115>x overlaps y if and only if there exists some z such that x has part z and z part of y</obo:IAO_0000115>
<obo:IAO_0000424>http://purl.obolibrary.org/obo/BFO_0000051 some (http://purl.obolibrary.org/obo/BFO_0000050 some ?Y)</obo:IAO_0000424>
<obo:RO_0001900 rdf:resource="http://purl.obolibrary.org/obo/RO_0001901"/>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/valid_for_go_annotation_extension"/>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/valid_for_gocam"/>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/ro/subsets#ro-eco"/>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ro.owl"/>
<rdfs:label xml:lang="en">overlaps</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002211 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002211">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002411"/>
<owl:inverseOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002334"/>
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#TransitiveProperty"/>
<rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/BFO_0000015"/>
<rdfs:range rdf:resource="http://purl.obolibrary.org/obo/BFO_0000015"/>
<owl:propertyChainAxiom rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0002578"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0002578"/>
</owl:propertyChainAxiom>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
<obo:IAO_0000115>process(P1) regulates process(P2) iff: P1 results in the initiation or termination of P2 OR affects the frequency of its initiation or termination OR affects the magnitude or rate of output of P2.</obo:IAO_0000115>
<obo:IAO_0000116>We use 'regulates' here to specifically imply control. However, many colloquial usages of the term correctly correspond to the weaker relation of 'causally upstream of or within' (aka influences). Consider relabeling to make things more explicit</obo:IAO_0000116>
<obo:IAO_0000117>Chris Mungall</obo:IAO_0000117>
<obo:IAO_0000117>David Hill</obo:IAO_0000117>
<obo:IAO_0000117>Tanya Berardini</obo:IAO_0000117>
<obo:IAO_0000119 rdf:resource="http://purl.obolibrary.org/obo/ro/docs/causal-relations"/>
<obo:IAO_0000119>GO</obo:IAO_0000119>
<obo:IAO_0000232>Regulation precludes parthood; the regulatory process may not be within the regulated process.</obo:IAO_0000232>
<obo:IAO_0000589>regulates (processual)</obo:IAO_0000589>
<obo:IAO_0000600 rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">false</obo:IAO_0000600>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/valid_for_go_annotation_extension"/>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/valid_for_go_ontology"/>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/valid_for_gocam"/>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ro.owl"/>
<rdfs:label xml:lang="en">regulates</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002212 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002212">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002211"/>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002305"/>
<owl:inverseOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002335"/>
<obo:IAO_0000115>Process(P1) negatively regulates process(P2) iff: P1 terminates P2, or P1 descreases the the frequency of initiation of P2 or the magnitude or rate of output of P2.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Chris Mungall</obo:IAO_0000117>
<obo:IAO_0000119 rdf:resource="http://purl.obolibrary.org/obo/ro/docs/causal-relations"/>
<obo:IAO_0000589>negatively regulates (process to process)</obo:IAO_0000589>
<obo:RO_0004050 rdf:resource="http://purl.obolibrary.org/obo/RO_0002211"/>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/valid_for_go_annotation_extension"/>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/valid_for_go_ontology"/>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/valid_for_gocam"/>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ro.owl"/>
<rdfs:label xml:lang="en">negatively regulates</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002213 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002213">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002211"/>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002304"/>
<owl:inverseOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002336"/>
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#TransitiveProperty"/>
<owl:propertyChainAxiom rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0002212"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0002212"/>
</owl:propertyChainAxiom>
<obo:IAO_0000115>Process(P1) postively regulates process(P2) iff: P1 initiates P2, or P1 increases the the frequency of initiation of P2 or the magnitude or rate of output of P2.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Chris Mungall</obo:IAO_0000117>
<obo:IAO_0000119 rdf:resource="http://purl.obolibrary.org/obo/ro/docs/causal-relations"/>
<obo:IAO_0000589>positively regulates (process to process)</obo:IAO_0000589>
<obo:RO_0004049 rdf:resource="http://purl.obolibrary.org/obo/RO_0002211"/>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/valid_for_go_annotation_extension"/>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/valid_for_go_ontology"/>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/valid_for_gocam"/>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ro.owl"/>
<rdfs:label xml:lang="en">positively regulates</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002215 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002215">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002216"/>
<rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/BFO_0000004"/>
<rdfs:range rdf:resource="http://purl.obolibrary.org/obo/BFO_0000015"/>
<obo:IAO_0000112>mechanosensory neuron capable of detection of mechanical stimulus involved in sensory perception (GO:0050974)</obo:IAO_0000112>
<obo:IAO_0000112>osteoclast SubClassOf 'capable of' some 'bone resorption'</obo:IAO_0000112>
<obo:IAO_0000115>A relation between a material entity (such as a cell) and a process, in which the material entity has the ability to carry out the process. </obo:IAO_0000115>
<obo:IAO_0000117>Chris Mungall</obo:IAO_0000117>
<obo:IAO_0000118>has function realized in</obo:IAO_0000118>
<obo:IAO_0000119 rdf:resource="http://www.ncbi.nlm.nih.gov/pubmed/20123131"/>
<obo:IAO_0000119 rdf:resource="http://www.ncbi.nlm.nih.gov/pubmed/21208450"/>
<obo:IAO_0000232>For compatibility with BFO, this relation has a shortcut definition in which the expression "capable of some P" expands to "bearer_of (some realized_by only P)".</obo:IAO_0000232>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/ro/subsets#ro-eco"/>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ro.owl"/>
<rdfs:label xml:lang="en">capable of</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002216 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002216">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002328"/>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002500"/>
<obo:IAO_0000115>c stands in this relationship to p if and only if there exists some p' such that c is capable_of p', and p' is part_of p.</obo:IAO_0000115>
<obo:IAO_0000117>Chris Mungall</obo:IAO_0000117>
<obo:IAO_0000118>has function in</obo:IAO_0000118>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ro.owl"/>
<rdfs:label xml:lang="en">capable of part of</rdfs:label>
<rdfs:seeAlso rdf:resource="https://github.com/oborel/obo-relations/wiki/ROGuide#defining-property-chains-involving-reflexivity"/>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002222 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002222">
<rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/BFO_0000003"/>
<rdfs:range rdf:resource="http://purl.obolibrary.org/obo/BFO_0000003"/>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
<obo:IAO_0000117>Chris Mungall</obo:IAO_0000117>
<obo:IAO_0000119 rdf:resource="https://en.wikipedia.org/wiki/Allen%27s_interval_algebra"/>
<obo:IAO_0000232>Do not use this relation directly. It is ended as a grouping for relations between occurrents involving the relative timing of their starts and ends.</obo:IAO_0000232>
<terms:source rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">https://docs.google.com/document/d/1kBv1ep_9g3sTR-SD3jqzFqhuwo9TPNF-l-9fUDbO6rM/edit?pli=1</terms:source>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/ro/subsets#ro-eco"/>
<rdfs:comment>A relation that holds between two occurrents. This is a grouping relation that collects together all the Allen relations.</rdfs:comment>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ro.owl"/>
<rdfs:label xml:lang="en">temporally related to</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002233 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002233">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0000057"/>
<owl:inverseOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002352"/>
<rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/BFO_0000015"/>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
<obo:IAO_0000115>p has input c iff: p is a process, c is a material entity, c is a participant in p, c is present at the start of p, and the state of c is modified during p.</obo:IAO_0000115>
<obo:IAO_0000117>Chris Mungall</obo:IAO_0000117>
<obo:IAO_0000118>consumes</obo:IAO_0000118>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/valid_for_go_annotation_extension"/>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/valid_for_go_ontology"/>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/valid_for_gocam"/>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/ro/subsets#ro-eco"/>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ro.owl"/>
<rdfs:label xml:lang="en">has input</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002263 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002263">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002264"/>
<owl:propertyChainAxiom rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0002327"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0002411"/>
</owl:propertyChainAxiom>
<obo:IAO_0000112>A faulty traffic light (material entity) whose malfunctioning (a process) is causally upstream of a traffic collision (a process): the traffic light acts upstream of the collision.</obo:IAO_0000112>
<obo:IAO_0000115>c acts upstream of p if and only if c enables some f that is involved in p' and p' occurs chronologically before p, is not part of p, and affects the execution of p. c is a material entity and f, p, p' are processes.</obo:IAO_0000115>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/valid_for_go_gp2term"/>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ro.owl"/>
<rdfs:label>acts upstream of</rdfs:label>
<rdfs:seeAlso rdf:resource="http://wiki.geneontology.org/index.php/Acts_upstream_of"/>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002264 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002264">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002500"/>
<owl:propertyChainAxiom rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0002327"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0002418"/>
</owl:propertyChainAxiom>
<obo:IAO_0000112>A gene product that has some activity, where that activity may be a part of a pathway or upstream of the pathway.</obo:IAO_0000112>
<obo:IAO_0000115>c acts upstream of or within p if c is enables f, and f is causally upstream of or within p. c is a material entity and p is an process.</obo:IAO_0000115>
<oboInOwl:hasRelatedSynonym>affects</oboInOwl:hasRelatedSynonym>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/valid_for_go_gp2term"/>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ro.owl"/>
<rdfs:label>acts upstream of or within</rdfs:label>
<rdfs:seeAlso rdf:resource="http://wiki.geneontology.org/index.php/Acts_upstream_of_or_within"/>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002304 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002304">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002411"/>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0004047"/>
<obo:RO_0004049 rdf:resource="http://purl.obolibrary.org/obo/RO_0002411"/>
<terms:creator>cjm</terms:creator>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/valid_for_go_annotation_extension"/>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/valid_for_gocam"/>
<rdfs:comment>holds between x and y if and only if x is causally upstream of y and the progression of x increases the frequency, rate or extent of y</rdfs:comment>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ro.owl"/>
<rdfs:label>causally upstream of, positive effect</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002305 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002305">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002411"/>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0004046"/>
<obo:RO_0004050 rdf:resource="http://purl.obolibrary.org/obo/RO_0002411"/>
<terms:creator>cjm</terms:creator>
<rdfs:comment>holds between x and y if and only if x is causally upstream of y and the progression of x decreases the frequency, rate or extent of y</rdfs:comment>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ro.owl"/>
<rdfs:label>causally upstream of, negative effect</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002321 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002321">
<obo:IAO_0000115>A relationship that is mediated in some way by the environment or environmental feature (ENVO:00002297)</obo:IAO_0000115>
<obo:IAO_0000116>Awaiting class for domain/range constraint, see: https://github.com/OBOFoundry/Experimental-OBO-Core/issues/6</obo:IAO_0000116>
<obo:IAO_0000117>Chris Mungall</obo:IAO_0000117>
<obo:IAO_0000232>Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving ecological interactions</obo:IAO_0000232>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/ro/subsets#ro-eco"/>
<rdfs:label xml:lang="en">ecologically related to</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002323 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002323">
<obo:IAO_0000115>A mereological relationship or a topological relationship</obo:IAO_0000115>
<obo:IAO_0000117>Chris Mungall</obo:IAO_0000117>
<obo:IAO_0000232>Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving parthood or connectivity relationships</obo:IAO_0000232>
<obo:RO_0001900 rdf:resource="http://purl.obolibrary.org/obo/RO_0001901"/>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ro.owl"/>
<rdfs:label xml:lang="en">mereotopologically related to</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002327 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002327">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002215"/>
<owl:inverseOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002333"/>
<obo:IAO_0000112>a particular instances of akt-2 enables some instance of protein kinase activity</obo:IAO_0000112>
<obo:IAO_0000117>Chris Mungall</obo:IAO_0000117>
<obo:IAO_0000118>catalyzes</obo:IAO_0000118>
<obo:IAO_0000118>executes</obo:IAO_0000118>
<obo:IAO_0000118>has</obo:IAO_0000118>
<obo:IAO_0000118>is catalyzing</obo:IAO_0000118>
<obo:IAO_0000118>is executing</obo:IAO_0000118>
<obo:IAO_0000232>This relation differs from the parent relation 'capable of' in that the parent is weaker and only expresses a capability that may not be actually realized, whereas this relation is always realized.</obo:IAO_0000232>
<obo:IAO_0000232>This relation is currently used experimentally by the Gene Ontology Consortium. It may not be stable and may be obsoleted at some future time.</obo:IAO_0000232>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/valid_for_go_gp2term"/>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ro.owl"/>
<rdfs:label xml:lang="en">enables</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002328 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002328">
<obo:IAO_0000115>A grouping relationship for any relationship directly involving a function, or that holds because of a function of one of the related entities.</obo:IAO_0000115>
<obo:IAO_0000117>Chris Mungall</obo:IAO_0000117>
<obo:IAO_0000232>This is a grouping relation that collects relations used for the purpose of connecting structure and function</obo:IAO_0000232>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ro.owl"/>
<rdfs:label xml:lang="en">functionally related to</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002329 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002329">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002328"/>
<obo:IAO_0000115>this relation holds between c and p when c is part of some c', and c' is capable of p.</obo:IAO_0000115>
<obo:IAO_0000117>Chris Mungall</obo:IAO_0000117>
<obo:IAO_0000118 rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">false</obo:IAO_0000118>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ro.owl"/>
<rdfs:label xml:lang="en">part of structure that is capable of</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002331 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002331">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0000056"/>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002431"/>
<obo:IAO_0000115>c involved_in p if and only if c enables some process p', and p' is part of p</obo:IAO_0000115>
<obo:IAO_0000117>Chris Mungall</obo:IAO_0000117>
<obo:IAO_0000118>actively involved in</obo:IAO_0000118>
<obo:IAO_0000118>enables part of</obo:IAO_0000118>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ro.owl"/>
<rdfs:label xml:lang="en">involved in</rdfs:label>
<rdfs:seeAlso rdf:resource="http://wiki.geneontology.org/index.php/Involved_in"/>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002333 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002333">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0000057"/>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002328"/>
<obo:IAO_0000115>inverse of enables</obo:IAO_0000115>
<obo:IAO_0000117>Chris Mungall</obo:IAO_0000117>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/valid_for_gocam"/>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ro.owl"/>
<rdfs:label xml:lang="en">enabled by</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002334 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002334">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002427"/>
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#TransitiveProperty"/>
<rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/BFO_0000015"/>
<rdfs:range rdf:resource="http://purl.obolibrary.org/obo/BFO_0000015"/>
<obo:IAO_0000115>inverse of regulates</obo:IAO_0000115>
<obo:IAO_0000117>Chris Mungall</obo:IAO_0000117>
<obo:IAO_0000589>regulated by (processual)</obo:IAO_0000589>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/RO_0002259"/>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ro.owl"/>
<rdfs:label xml:lang="en">regulated by</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002335 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002335">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002334"/>
<obo:IAO_0000115>inverse of negatively regulates</obo:IAO_0000115>
<obo:IAO_0000117>Chris Mungall</obo:IAO_0000117>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/RO_0002259"/>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ro.owl"/>
<rdfs:label xml:lang="en">negatively regulated by</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002336 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002336">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002334"/>
<obo:IAO_0000115>inverse of positively regulates</obo:IAO_0000115>
<obo:IAO_0000117>Chris Mungall</obo:IAO_0000117>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/RO_0002259"/>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ro.owl"/>
<rdfs:label xml:lang="en">positively regulated by</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002350 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002350">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:inverseOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002351"/>
<obo:IAO_0000112>An organism that is a member of a population of organisms</obo:IAO_0000112>
<obo:IAO_0000115>is member of is a mereological relation between a item and a collection.</obo:IAO_0000115>
<obo:IAO_0000118>is member of</obo:IAO_0000118>
<obo:IAO_0000118>member part of</obo:IAO_0000118>
<obo:IAO_0000119>SIO</obo:IAO_0000119>
<obo:RO_0001900 rdf:resource="http://purl.obolibrary.org/obo/RO_0001901"/>
<rdfs:label xml:lang="en">member of</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002351 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002351">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000051"/>
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#IrreflexiveProperty"/>
<obo:IAO_0000115>has member is a mereological relation between a collection and an item.</obo:IAO_0000115>
<obo:IAO_0000119>SIO</obo:IAO_0000119>
<obo:RO_0001900 rdf:resource="http://purl.obolibrary.org/obo/RO_0001901"/>
<rdfs:label xml:lang="en">has member</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002352 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002352">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0000056"/>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002328"/>
<obo:IAO_0000115>inverse of has input</obo:IAO_0000115>
<obo:IAO_0000117>Chris Mungall</obo:IAO_0000117>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/RO_0002259"/>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/ro/subsets#ro-eco"/>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ro.owl"/>
<rdfs:label xml:lang="en">input of</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002404 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002404">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000062"/>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002427"/>
<owl:inverseOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002411"/>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000428"/>
<obo:IAO_0000115>inverse of upstream of</obo:IAO_0000115>
<obo:IAO_0000117>Chris Mungall</obo:IAO_0000117>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ro.owl"/>
<rdfs:label xml:lang="en">causally downstream of</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002405 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002405">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002087"/>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002404"/>
<owl:inverseOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002412"/>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000428"/>
<obo:IAO_0000117>Chris Mungall</obo:IAO_0000117>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ro.owl"/>
<rdfs:label xml:lang="en">immediately causally downstream of</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002410 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002410">
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000428"/>
<obo:IAO_0000115>This relation groups causal relations between material entities and causal relations between processes</obo:IAO_0000115>
<obo:IAO_0000116>This branch of the ontology deals with causal relations between entities. It is divided into two branches: causal relations between occurrents/processes, and causal relations between material entities. We take an 'activity flow-centric approach', with the former as primary, and define causal relations between material entities in terms of causal relations between occurrents.
To define causal relations in an activity-flow type network, we make use of 3 primitives:
* Temporal: how do the intervals of the two occurrents relate?
* Is the causal relation regulatory?
* Is the influence positive or negative
The first of these can be formalized in terms of the Allen Interval Algebra. Informally, the 3 bins we care about are 'direct', 'indirect' or overlapping. Note that all causal relations should be classified under a RO temporal relation (see the branch under 'temporally related to'). Note that all causal relations are temporal, but not all temporal relations are causal. Two occurrents can be related in time without being causally connected. We take causal influence to be primitive, elucidated as being such that has the upstream changed, some qualities of the donwstream would necessarily be modified.
For the second, we consider a relationship to be regulatory if the system in which the activities occur is capable of altering the relationship to achieve some objective. This could include changing the rate of production of a molecule.
For the third, we consider the effect of the upstream process on the output(s) of the downstream process. If the level of output is increased, or the rate of production of the output is increased, then the direction is increased. Direction can be positive, negative or neutral or capable of either direction. Two positives in succession yield a positive, two negatives in succession yield a positive, otherwise the default assumption is that the net effect is canceled and the influence is neutral.
Each of these 3 primitives can be composed to yield a cross-product of different relation types.</obo:IAO_0000116>
<obo:IAO_0000117>Chris Mungall</obo:IAO_0000117>
<obo:IAO_0000232>Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect.</obo:IAO_0000232>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ro.owl"/>
<rdfs:label xml:lang="en">causally related to</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002411 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002411">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000063"/>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002418"/>
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#TransitiveProperty"/>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000428"/>
<obo:IAO_0000115>p is causally upstream of q if and only if p precedes q and p and q are linked in a causal chain</obo:IAO_0000115>
<obo:IAO_0000117>Chris Mungall</obo:IAO_0000117>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/valid_for_go_annotation_extension"/>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/valid_for_gocam"/>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ro.owl"/>
<rdfs:label xml:lang="en">causally upstream of</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002412 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002412">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002090"/>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002411"/>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000428"/>
<obo:IAO_0000115>p is immediately causally upstream of q iff both (a) p immediately precedes q and (b) p is causally upstream of q. In addition, the output of p must be an input of q.</obo:IAO_0000115>
<obo:IAO_0000117>Chris Mungall</obo:IAO_0000117>
<obo:RO_0002575 rdf:resource="http://purl.obolibrary.org/obo/RO_0002411"/>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ro.owl"/>
<rdfs:label xml:lang="en">immediately causally upstream of</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002418 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002418">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002501"/>
<owl:inverseOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002427"/>
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#TransitiveProperty"/>
<obo:IAO_0000115>p 'causally upstream or within' q iff (1) the end of p is before the end of q and (2) the execution of p exerts some causal influence over the outputs of q; i.e. if p was abolished or the outputs of p were to be modified, this would necessarily affect q.</obo:IAO_0000115>
<obo:IAO_0000116>We would like to make this disjoint with 'preceded by', but this is prohibited in OWL2</obo:IAO_0000116>
<obo:IAO_0000117>Chris Mungall</obo:IAO_0000117>
<obo:IAO_0000118>influences (processual)</obo:IAO_0000118>
<oboInOwl:hasRelatedSynonym>affects</oboInOwl:hasRelatedSynonym>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ro.owl"/>
<rdfs:label>causally upstream of or within</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002427 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002427">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002501"/>
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#TransitiveProperty"/>
<obo:IAO_0000115>inverse of causally upstream of or within</obo:IAO_0000115>
<obo:IAO_0000117>Chris Mungall</obo:IAO_0000117>
<obo:IAO_0000119 rdf:resource="http://purl.obolibrary.org/obo/ro/docs/causal-relations"/>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/RO_0002259"/>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ro.owl"/>
<rdfs:label>causally downstream of or within</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002428 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002428">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002263"/>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002431"/>
<owl:propertyChainAxiom rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0002327"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0002211"/>
</owl:propertyChainAxiom>
<owl:propertyChainAxiom rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0002331"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0002211"/>
</owl:propertyChainAxiom>
<obo:IAO_0000115>c involved in regulation of p if c is involved in some p' and p' regulates some p</obo:IAO_0000115>
<obo:IAO_0000117>Chris Mungall</obo:IAO_0000117>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ro.owl"/>
<rdfs:label>involved in regulation of</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002429 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002429">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002428"/>
<owl:propertyChainAxiom rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0002327"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0002213"/>
</owl:propertyChainAxiom>
<owl:propertyChainAxiom rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0002331"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0002213"/>
</owl:propertyChainAxiom>
<obo:IAO_0000115>c involved in regulation of p if c is involved in some p' and p' positively regulates some p</obo:IAO_0000115>
<obo:IAO_0000117>Chris Mungall</obo:IAO_0000117>
<obo:RO_0004049 rdf:resource="http://purl.obolibrary.org/obo/RO_0002428"/>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ro.owl"/>
<rdfs:label>involved in positive regulation of</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002430 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002430">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002428"/>
<owl:propertyChainAxiom rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0002327"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0002212"/>
</owl:propertyChainAxiom>
<owl:propertyChainAxiom rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0002331"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0002212"/>
</owl:propertyChainAxiom>
<obo:IAO_0000115>c involved in regulation of p if c is involved in some p' and p' negatively regulates some p</obo:IAO_0000115>
<obo:IAO_0000117>Chris Mungall</obo:IAO_0000117>
<obo:RO_0004050 rdf:resource="http://purl.obolibrary.org/obo/RO_0002428"/>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ro.owl"/>
<rdfs:label>involved in negative regulation of</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002431 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002431">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002264"/>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002328"/>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002500"/>
<obo:IAO_0000115>c involved in or regulates p if and only if either (i) c is involved in p or (ii) c is involved in regulation of p</obo:IAO_0000115>
<obo:IAO_0000116>OWL does not allow defining object properties via a Union</obo:IAO_0000116>
<obo:IAO_0000117>Chris Mungall</obo:IAO_0000117>
<obo:IAO_0000118>involved in or reguates</obo:IAO_0000118>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ro.owl"/>
<rdfs:label>involved in or involved in regulation of</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002432 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002432">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002131"/>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002328"/>
<owl:propertyChainAxiom rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0002327"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BFO_0000066"/>
</owl:propertyChainAxiom>
<obo:IAO_0000112>A protein that enables activity in a cytosol.</obo:IAO_0000112>
<obo:IAO_0000115>c executes activity in d if and only if c enables p and p occurs_in d. Assuming no action at a distance by gene products, if a gene product enables (is capable of) a process that occurs in some structure, it must have at least some part in that structure.</obo:IAO_0000115>
<obo:IAO_0000117>Chris Mungall</obo:IAO_0000117>
<obo:IAO_0000118>executes activity in</obo:IAO_0000118>
<oboInOwl:hasExactSynonym>enables activity in</oboInOwl:hasExactSynonym>
<rdfs:comment></rdfs:comment>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ro.owl"/>
<rdfs:label>is active in</rdfs:label>
</owl:ObjectProperty>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/RO_0002432"/>
<owl:annotatedProperty rdf:resource="http://www.w3.org/2002/07/owl#propertyChainAxiom"/>
<owl:annotatedTarget rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0002327"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BFO_0000066"/>
</owl:annotatedTarget>
<obo:RO_0002581 rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</obo:RO_0002581>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/RO_0002432"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget>c executes activity in d if and only if c enables p and p occurs_in d. Assuming no action at a distance by gene products, if a gene product enables (is capable of) a process that occurs in some structure, it must have at least some part in that structure.</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GOC:cjm</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GOC:dos</oboInOwl:hasDbXref>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/RO_0002434 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002434">
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#SymmetricProperty"/>
<rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
<rdfs:range rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
<obo:IAO_0000115>A relationship that holds between two entities in which the processes executed by the two entities are causally connected.</obo:IAO_0000115>
<obo:IAO_0000116 rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">Considering relabeling as 'pairwise interacts with'</obo:IAO_0000116>
<obo:IAO_0000116>This relation and all sub-relations can be applied to either (1) pairs of entities that are interacting at any moment of time (2) populations or species of entity whose members have the disposition to interact (3) classes whose members have the disposition to interact.</obo:IAO_0000116>
<obo:IAO_0000117>Chris Mungall</obo:IAO_0000117>
<obo:IAO_0000232>Note that this relationship type, and sub-relationship types may be redundant with process terms from other ontologies. For example, the symbiotic relationship hierarchy parallels GO. The relations are provided as a convenient shortcut. Consider using the more expressive processual form to capture your data. In the future, these relations will be linked to their cognate processes through rules.</obo:IAO_0000232>
<oboInOwl:hasExactSynonym>in pairwise interaction with</oboInOwl:hasExactSynonym>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/ro/subsets#ro-eco"/>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ro.owl"/>
<rdfs:label>interacts with</rdfs:label>
<rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/MI_0914</rdfs:seeAlso>
<foaf:page rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">https://github.com/oborel/obo-relations/wiki/InteractionRelations</foaf:page>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002436 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002436">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002434"/>
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#SymmetricProperty"/>
<obo:IAO_0000115>An interaction relationship in which the two partners are molecular entities that directly physically interact with each other for example via a stable binding interaction or a brief interaction during which one modifies the other.</obo:IAO_0000115>
<obo:IAO_0000117>Chris Mungall</obo:IAO_0000117>
<obo:IAO_0000118>binds</obo:IAO_0000118>
<obo:IAO_0000118>molecularly binds with</obo:IAO_0000118>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ro.owl"/>
<rdfs:label>molecularly interacts with</rdfs:label>
<rdfs:seeAlso rdf:resource="http://purl.obolibrary.org/obo/ECO_0000353"/>
<rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/MI_0915</rdfs:seeAlso>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002447 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002447">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002436"/>
<obo:IAO_0000116>Axiomatization to GO to be added later</obo:IAO_0000116>
<obo:IAO_0000117>Chris Mungall</obo:IAO_0000117>
<obo:IAO_0000118>An interaction relation between x and y in which x catalyzes a reaction in which a phosphate group is added to y.</obo:IAO_0000118>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ro.owl"/>
<rdfs:label>phosphorylates</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002448 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002448">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002436"/>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0011002"/>
<rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
<rdfs:range rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
<owl:propertyChainAxiom rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0002327"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0002211"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0002333"/>
</owl:propertyChainAxiom>
<obo:IAO_0000115>The entity A, immediately upstream of the entity B, has an activity that regulates an activity performed by B. For example, A and B may be gene products and binding of B by A regulates the kinase activity of B.
A and B can be physically interacting but not necessarily. Immediately upstream means there are no intermediate entity between A and B.</obo:IAO_0000115>
<obo:IAO_0000117>Chris Mungall</obo:IAO_0000117>
<obo:IAO_0000117>Vasundra Touré</obo:IAO_0000117>
<oboInOwl:hasExactSynonym>molecularly controls</oboInOwl:hasExactSynonym>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ro.owl"/>
<rdfs:label>directly regulates activity of</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002449 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002449">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002448"/>
<rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
<rdfs:range rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
<owl:propertyChainAxiom rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0002327"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0002630"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0002333"/>
</owl:propertyChainAxiom>
<obo:IAO_0000115>The entity A, immediately upstream of the entity B, has an activity that negatively regulates an activity performed by B.
For example, A and B may be gene products and binding of B by A negatively regulates the kinase activity of B.</obo:IAO_0000115>
<obo:IAO_0000117>Chris Mungall</obo:IAO_0000117>
<obo:IAO_0000117>Vasundra Touré</obo:IAO_0000117>
<obo:IAO_0000118>directly inhibits</obo:IAO_0000118>
<oboInOwl:hasExactSynonym>molecularly decreases activity of</oboInOwl:hasExactSynonym>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ro.owl"/>
<rdfs:label>directly negatively regulates activity of</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002450 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002450">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002448"/>
<rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
<rdfs:range rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
<owl:propertyChainAxiom rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0002327"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0002629"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0002333"/>
</owl:propertyChainAxiom>
<obo:IAO_0000115>The entity A, immediately upstream of the entity B, has an activity that positively regulates an activity performed by B.
For example, A and B may be gene products and binding of B by A positively regulates the kinase activity of B.</obo:IAO_0000115>
<obo:IAO_0000117>Chris Mungall</obo:IAO_0000117>
<obo:IAO_0000117>Vasundra Touré</obo:IAO_0000117>
<obo:IAO_0000118>directly activates</obo:IAO_0000118>
<oboInOwl:hasExactSynonym>molecularly increases activity of</oboInOwl:hasExactSynonym>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ro.owl"/>
<rdfs:label>directly positively regulates activity of</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002464 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002464">
<obo:IAO_0000117>Chris Mungall</obo:IAO_0000117>
<obo:IAO_0000232>This property or its subproperties is not to be used directly. These properties exist as helper properties that are used to support OWL reasoning.</obo:IAO_0000232>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ro.owl"/>
<rdfs:label>helper property (not for use in curation)</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002479 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002479">
<rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/BFO_0000003"/>
<rdfs:range rdf:resource="http://purl.obolibrary.org/obo/BFO_0000004"/>
<obo:IAO_0000115>p has part that occurs in c if and only if there exists some p1, such that p has_part p1, and p1 occurs in c.</obo:IAO_0000115>
<obo:IAO_0000117>Chris Mungall</obo:IAO_0000117>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/ro/subsets#ro-eco"/>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ro.owl"/>
<rdfs:label>has part that occurs in</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002481 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002481">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002564"/>
<obo:IAO_0000117>Chris Mungall</obo:IAO_0000117>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ro.owl"/>
<rdfs:label>is kinase activity</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002500 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002500">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002595"/>
<owl:inverseOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002608"/>
<obo:IAO_0000115>A relationship between a material entity and a process where the material entity has some causal role that influences the process</obo:IAO_0000115>
<obo:IAO_0000119 rdf:resource="http://purl.obolibrary.org/obo/ro/docs/causal-relations"/>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ro.owl"/>
<rdfs:label>causal agent in process</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002501 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002501">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002410"/>
<rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/BFO_0000003"/>
<rdfs:range rdf:resource="http://purl.obolibrary.org/obo/BFO_0000003"/>
<obo:IAO_0000115>p is causally related to q if and only if p or any part of p and q or any part of q are linked by a chain of events where each event pair is one of direct activation or direct inhibition. p may be upstream, downstream, part of or a container of q.</obo:IAO_0000115>
<obo:IAO_0000117>Chris Mungall</obo:IAO_0000117>
<obo:IAO_0000119 rdf:resource="http://purl.obolibrary.org/obo/ro/docs/causal-relations"/>
<obo:IAO_0000232>Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect.</obo:IAO_0000232>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ro.owl"/>
<rdfs:label>causal relation between processes</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002506 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002506">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002410"/>
<rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/BFO_0000002"/>
<rdfs:range rdf:resource="http://purl.obolibrary.org/obo/BFO_0000002"/>
<obo:IAO_0000116>The intent is that the process branch of the causal property hierarchy is primary (causal relations hold between occurrents/processes), and that the material branch is defined in terms of the process branch</obo:IAO_0000116>
<obo:IAO_0000117>Chris Mungall</obo:IAO_0000117>
<obo:IAO_0000119 rdf:resource="http://purl.obolibrary.org/obo/ro/docs/causal-relations"/>
<obo:IAO_0000232>Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect.</obo:IAO_0000232>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ro.owl"/>
<rdfs:label>causal relation between entities</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002559 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002559">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002506"/>
<owl:inverseOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002566"/>
<obo:IAO_0000117>Chris Mungall</obo:IAO_0000117>
<obo:IAO_0000119 rdf:resource="http://purl.obolibrary.org/obo/ro/docs/causal-relations"/>
<obo:IAO_0000589>causally influenced by (entity-centric)</obo:IAO_0000589>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ro.owl"/>
<rdfs:label>causally influenced by</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002563 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002563">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002464"/>
<obo:IAO_0000117>Chris Mungall</obo:IAO_0000117>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ro.owl"/>
<rdfs:label>interaction relation helper property</rdfs:label>
<rdfs:seeAlso rdf:resource="http://ontologydesignpatterns.org/wiki/Submissions:N-Ary_Relation_Pattern_%28OWL_2%29"/>
<foaf:page rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">https://github.com/oborel/obo-relations/wiki/InteractionRelations</foaf:page>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002564 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002564">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002563"/>
<obo:IAO_0000117>Chris Mungall</obo:IAO_0000117>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ro.owl"/>
<rdfs:label>molecular interaction relation helper property</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002566 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002566">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002506"/>
<rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/BFO_0000002"/>
<rdfs:range rdf:resource="http://purl.obolibrary.org/obo/BFO_0000002"/>
<owl:propertyChainAxiom rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0002327"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0002411"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0002233"/>
</owl:propertyChainAxiom>
<owl:propertyChainAxiom rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0002327"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0002411"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0002333"/>
</owl:propertyChainAxiom>
<obo:IAO_0000115>The entity or characteristic A is causally upstream of the entity or characteristic B, A having an effect on B. An entity corresponds to any biological type of entity as long as a mass is measurable. A characteristic corresponds to a particular specificity of an entity (e.g., phenotype, shape, size).</obo:IAO_0000115>
<obo:IAO_0000117>Chris Mungall</obo:IAO_0000117>
<obo:IAO_0000117>Vasundra Touré</obo:IAO_0000117>
<obo:IAO_0000119 rdf:resource="http://purl.obolibrary.org/obo/ro/docs/causal-relations"/>
<obo:IAO_0000589>causally influences (entity-centric)</obo:IAO_0000589>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ro.owl"/>
<rdfs:label>causally influences</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002578 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002578">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002211"/>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002412"/>
<obo:IAO_0000115>Process(P1) directly regulates process(P2) iff: P1 regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding regulates the kinase activity (P2) of protein B then P1 directly regulates P2.</obo:IAO_0000115>
<obo:IAO_0000117>Chris Mungall</obo:IAO_0000117>
<obo:IAO_0000119 rdf:resource="http://purl.obolibrary.org/obo/ro/docs/causal-relations"/>
<obo:IAO_0000589>directly regulates (processual)</obo:IAO_0000589>
<obo:RO_0002575 rdf:resource="http://purl.obolibrary.org/obo/RO_0002211"/>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/valid_for_go_annotation_extension"/>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/valid_for_go_ontology"/>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/valid_for_gocam"/>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ro.owl"/>
<rdfs:label>directly regulates</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002584 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002584">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002328"/>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002595"/>
<obo:IAO_0000112>gland SubClassOf 'has part structure that is capable of' some 'secretion by cell'</obo:IAO_0000112>
<obo:IAO_0000115>s 'has part structure that is capable of' p if and only if there exists some part x such that s 'has part' x and x 'capable of' p</obo:IAO_0000115>
<obo:IAO_0000117>Chris Mungall</obo:IAO_0000117>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ro.owl"/>
<rdfs:label>has part structure that is capable of</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002595 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002595">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002410"/>
<rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
<rdfs:range rdf:resource="http://purl.obolibrary.org/obo/BFO_0000015"/>
<obo:IAO_0000115>A relationship that holds between a material entity and a process in which causality is involved, with either the material entity or some part of the material entity exerting some influence over the process, or the process influencing some aspect of the material entity.</obo:IAO_0000115>
<obo:IAO_0000116>Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect.</obo:IAO_0000116>
<obo:IAO_0000117>Chris Mungall</obo:IAO_0000117>
<obo:IAO_0000119 rdf:resource="http://purl.obolibrary.org/obo/ro/docs/causal-relations"/>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ro.owl"/>
<rdfs:label>causal relation between material entity and a process</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002596 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002596">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002500"/>
<owl:propertyChainAxiom rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0002215"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0002211"/>
</owl:propertyChainAxiom>
<obo:IAO_0000112>pyrethroid -> growth</obo:IAO_0000112>
<obo:IAO_0000115>Holds between c and p if and only if c is capable of some activity a, and a regulates p.</obo:IAO_0000115>
<obo:IAO_0000119 rdf:resource="http://purl.obolibrary.org/obo/ro/docs/causal-relations"/>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ro.owl"/>
<rdfs:label>capable of regulating</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002597 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002597">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002596"/>
<owl:propertyChainAxiom rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0002215"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0002212"/>
</owl:propertyChainAxiom>
<obo:IAO_0000115>Holds between c and p if and only if c is capable of some activity a, and a negatively regulates p.</obo:IAO_0000115>
<obo:IAO_0000119 rdf:resource="http://purl.obolibrary.org/obo/ro/docs/causal-relations"/>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ro.owl"/>
<rdfs:label>capable of negatively regulating</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002598 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002598">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002596"/>
<owl:propertyChainAxiom rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0002215"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0002213"/>
</owl:propertyChainAxiom>
<obo:IAO_0000112>renin -> arteriolar smooth muscle contraction</obo:IAO_0000112>
<obo:IAO_0000115>Holds between c and p if and only if c is capable of some activity a, and a positively regulates p.</obo:IAO_0000115>
<obo:IAO_0000119 rdf:resource="http://purl.obolibrary.org/obo/ro/docs/causal-relations"/>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ro.owl"/>
<rdfs:label>capable of positively regulating</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002608 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002608">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002410"/>
<obo:IAO_0000115>Inverse of 'causal agent in process'</obo:IAO_0000115>
<obo:IAO_0000119 rdf:resource="http://purl.obolibrary.org/obo/ro/docs/causal-relations"/>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ro.owl"/>
<rdfs:label>process has causal agent</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002629 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002629">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002213"/>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002578"/>
<obo:IAO_0000115>Process(P1) directly postively regulates process(P2) iff: P1 positively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding positively regulates the kinase activity (P2) of protein B then P1 directly positively regulates P2.</obo:IAO_0000115>
<obo:IAO_0000119 rdf:resource="http://purl.obolibrary.org/obo/ro/docs/causal-relations"/>
<obo:IAO_0000589>directly positively regulates (process to process)</obo:IAO_0000589>
<obo:RO_0004049 rdf:resource="http://purl.obolibrary.org/obo/RO_0002578"/>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/valid_for_go_annotation_extension"/>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/valid_for_go_ontology"/>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/valid_for_gocam"/>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ro.owl"/>
<rdfs:label>directly positively regulates</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002630 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002630">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002212"/>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002578"/>
<obo:IAO_0000115>Process(P1) directly negatively regulates process(P2) iff: P1 negatively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding negatively regulates the kinase activity (P2) of protein B then P1 directly negatively regulates P2.</obo:IAO_0000115>
<obo:IAO_0000119 rdf:resource="http://purl.obolibrary.org/obo/ro/docs/causal-relations"/>
<obo:IAO_0000589>directly negatively regulates (process to process)</obo:IAO_0000589>
<obo:RO_0004050 rdf:resource="http://purl.obolibrary.org/obo/RO_0002578"/>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/valid_for_go_annotation_extension"/>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/valid_for_go_ontology"/>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/valid_for_gocam"/>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ro.owl"/>
<rdfs:label>directly negatively regulates</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0004031 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0004031">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002328"/>
<obo:IAO_0000115>Holds between an entity and an process P where the entity enables some larger compound process, and that larger process has-part P.</obo:IAO_0000115>
<oboInOwl:created_by>cjm</oboInOwl:created_by>
<oboInOwl:creation_date rdf:datatype="http://www.w3.org/2001/XMLSchema#dateTime">2018-01-25T23:20:13Z</oboInOwl:creation_date>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ro.owl"/>
<rdfs:label>enables subfunction</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0004032 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0004032">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002264"/>
<owl:propertyChainAxiom rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0002327"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0004047"/>
</owl:propertyChainAxiom>
<obo:RO_0004049 rdf:resource="http://purl.obolibrary.org/obo/RO_0002264"/>
<oboInOwl:created_by>cjm</oboInOwl:created_by>
<oboInOwl:creation_date rdf:datatype="http://www.w3.org/2001/XMLSchema#dateTime">2018-01-26T23:49:30Z</oboInOwl:creation_date>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/valid_for_go_gp2term"/>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ro.owl"/>
<rdfs:label>acts upstream of or within, positive effect</rdfs:label>
<rdfs:seeAlso rdf:resource="http://wiki.geneontology.org/index.php/Acts_upstream_of_or_within,_positive_effect"/>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0004033 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0004033">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002264"/>
<owl:propertyChainAxiom rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0002327"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0004046"/>
</owl:propertyChainAxiom>
<obo:RO_0004050 rdf:resource="http://purl.obolibrary.org/obo/RO_0002264"/>
<oboInOwl:created_by>cjm</oboInOwl:created_by>
<oboInOwl:creation_date rdf:datatype="http://www.w3.org/2001/XMLSchema#dateTime">2018-01-26T23:49:51Z</oboInOwl:creation_date>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/valid_for_go_gp2term"/>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ro.owl"/>
<rdfs:label>acts upstream of or within, negative effect</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0004034 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0004034">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002263"/>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0004032"/>
<owl:propertyChainAxiom rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0002327"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0002304"/>
</owl:propertyChainAxiom>
<obo:IAO_0000115>c 'acts upstream of, positive effect' p if c is enables f, and f is causally upstream of p, and the direction of f is positive</obo:IAO_0000115>
<obo:RO_0004049 rdf:resource="http://purl.obolibrary.org/obo/RO_0002263"/>
<oboInOwl:created_by>cjm</oboInOwl:created_by>
<oboInOwl:creation_date rdf:datatype="http://www.w3.org/2001/XMLSchema#dateTime">2018-01-26T23:53:14Z</oboInOwl:creation_date>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/valid_for_go_gp2term"/>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ro.owl"/>
<rdfs:label>acts upstream of, positive effect</rdfs:label>
<rdfs:seeAlso rdf:resource="http://wiki.geneontology.org/index.php/Acts_upstream_of,_positive_effect"/>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0004035 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0004035">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002263"/>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0004033"/>
<owl:propertyChainAxiom rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0002327"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0002305"/>
</owl:propertyChainAxiom>
<obo:IAO_0000115>c 'acts upstream of, negative effect' p if c is enables f, and f is causally upstream of p, and the direction of f is negative</obo:IAO_0000115>
<obo:RO_0004050 rdf:resource="http://purl.obolibrary.org/obo/RO_0002263"/>
<oboInOwl:created_by>cjm</oboInOwl:created_by>
<oboInOwl:creation_date rdf:datatype="http://www.w3.org/2001/XMLSchema#dateTime">2018-01-26T23:53:22Z</oboInOwl:creation_date>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/valid_for_go_gp2term"/>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ro.owl"/>
<rdfs:label>acts upstream of, negative effect</rdfs:label>
<rdfs:seeAlso rdf:resource="http://wiki.geneontology.org/index.php/Acts_upstream_of,_negative_effect"/>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0004046 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0004046">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002418"/>
<obo:RO_0004050 rdf:resource="http://purl.obolibrary.org/obo/RO_0002418"/>
<oboInOwl:created_by>cjm</oboInOwl:created_by>
<oboInOwl:creation_date rdf:datatype="http://www.w3.org/2001/XMLSchema#dateTime">2018-03-13T23:55:05Z</oboInOwl:creation_date>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ro.owl"/>
<rdfs:label>causally upstream of or within, negative effect</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0004047 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0004047">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002418"/>
<obo:RO_0004049 rdf:resource="http://purl.obolibrary.org/obo/RO_0002418"/>
<oboInOwl:created_by>cjm</oboInOwl:created_by>
<oboInOwl:creation_date rdf:datatype="http://www.w3.org/2001/XMLSchema#dateTime">2018-03-13T23:55:19Z</oboInOwl:creation_date>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ro.owl"/>
<rdfs:label>causally upstream of or within, positive effect</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0011002 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0011002">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002566"/>
<rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
<rdfs:range rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
<obo:IAO_0000115>The entity A has an activity that regulates an activity of the entity B. For example, A and B are gene products where the catalytic activity of A regulates the kinase activity of B.</obo:IAO_0000115>
<obo:IAO_0000117>Vasundra Touré</obo:IAO_0000117>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ro.owl"/>
<rdfs:label>regulates activity of</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/pato#decreased_in_magnitude_relative_to -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/pato#decreased_in_magnitude_relative_to">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/pato#different_in_magnitude_relative_to"/>
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#TransitiveProperty"/>
<rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/PATO_0000001"/>
<rdfs:range rdf:resource="http://purl.obolibrary.org/obo/PATO_0000001"/>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">q1 decreased_in_magnitude_relative_to q2 if and only if magnitude(q1) < magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale.</obo:IAO_0000115>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">quality</oboInOwl:hasOBONamespace>
<oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">decreased_in_magnitude_relative_to</oboInOwl:id>
<rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">This relation is used to determine the 'directionality' of relative qualities such as 'decreased strength', relative to the parent type, 'strength'.</rdfs:comment>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/pato.owl"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">decreased_in_magnitude_relative_to</rdfs:label>
</owl:ObjectProperty>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/pato#decreased_in_magnitude_relative_to"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">q1 decreased_in_magnitude_relative_to q2 if and only if magnitude(q1) < magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale.</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PATOC:CJM</oboInOwl:hasDbXref>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/pato#different_in_magnitude_relative_to -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/pato#different_in_magnitude_relative_to">
<rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/PATO_0000001"/>
<rdfs:range rdf:resource="http://purl.obolibrary.org/obo/PATO_0000001"/>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">q1 different_in_magnitude_relative_to q2 if and only if magnitude(q1) NOT =~ magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale.</obo:IAO_0000115>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">quality</oboInOwl:hasOBONamespace>
<oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">different_in_magnitude_relative_to</oboInOwl:id>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/pato.owl"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">different_in_magnitude_relative_to</rdfs:label>
</owl:ObjectProperty>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/pato#different_in_magnitude_relative_to"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">q1 different_in_magnitude_relative_to q2 if and only if magnitude(q1) NOT =~ magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale.</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PATOC:CJM</oboInOwl:hasDbXref>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/pato#increased_in_magnitude_relative_to -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/pato#increased_in_magnitude_relative_to">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/pato#different_in_magnitude_relative_to"/>
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#TransitiveProperty"/>
<rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/PATO_0000001"/>
<rdfs:range rdf:resource="http://purl.obolibrary.org/obo/PATO_0000001"/>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">q1 increased_in_magnitude_relative_to q2 if and only if magnitude(q1) > magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale.</obo:IAO_0000115>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">quality</oboInOwl:hasOBONamespace>
<oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">increased_in_magnitude_relative_to</oboInOwl:id>
<rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">This relation is used to determine the 'directionality' of relative qualities such as 'increased strength', relative to the parent type, 'strength'.</rdfs:comment>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/pato.owl"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">increased_in_magnitude_relative_to</rdfs:label>
</owl:ObjectProperty>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/pato#increased_in_magnitude_relative_to"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">q1 increased_in_magnitude_relative_to q2 if and only if magnitude(q1) > magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale.</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PATOC:CJM</oboInOwl:hasDbXref>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/pato#reciprocal_of -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/pato#reciprocal_of">
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">q1 reciprocal_of q2 if and only if : q1 and q2 are relational qualities and a phenotype e q1 e2 mutually implies a phenotype e2 q2 e.</obo:IAO_0000115>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">quality</oboInOwl:hasOBONamespace>
<oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">reciprocal_of</oboInOwl:id>
<rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">There are frequently two ways to state the same thing: we can say 'spermatocyte lacks asters' or 'asters absent from spermatocyte'. In this case the quality is 'lacking all parts of type' - it is a (relational) quality of the spermatocyte, and it is with respect to instances of 'aster'. One of the popular requirements of PATO is that it continue to support 'absent', so we need to relate statements which use this quality to the 'lacking all parts of type' quality.</rdfs:comment>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/pato.owl"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">reciprocal_of</rdfs:label>
</owl:ObjectProperty>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/pato#reciprocal_of"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">q1 reciprocal_of q2 if and only if : q1 and q2 are relational qualities and a phenotype e q1 e2 mutually implies a phenotype e2 q2 e.</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PATOC:CJM</oboInOwl:hasDbXref>
</owl:Axiom>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Classes
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://purl.obolibrary.org/obo/BFO_0000001 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000001">
<obo:BFO_0000179>entity</obo:BFO_0000179>
<obo:BFO_0000180>Entity</obo:BFO_0000180>
<obo:IAO_0000112 xml:lang="en">Julius Caesar</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">Verdi’s Requiem</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the Second World War</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">your body mass index</obo:IAO_0000112>
<obo:IAO_0000116 xml:lang="en">BFO 2 Reference: In all areas of empirical inquiry we encounter general terms of two sorts. First are general terms which refer to universals or types:animaltuberculosissurgical procedurediseaseSecond, are general terms used to refer to groups of entities which instantiate a given universal but do not correspond to the extension of any subuniversal of that universal because there is nothing intrinsic to the entities in question by virtue of which they – and only they – are counted as belonging to the given group. Examples are: animal purchased by the Emperortuberculosis diagnosed on a Wednesdaysurgical procedure performed on a patient from Stockholmperson identified as candidate for clinical trial #2056-555person who is signatory of Form 656-PPVpainting by Leonardo da VinciSuch terms, which represent what are called ‘specializations’ in [81</obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">Entity doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. For example Werner Ceusters 'portions of reality' include 4 sorts, entities (as BFO construes them), universals, configurations, and relations. It is an open question as to whether entities as construed in BFO will at some point also include these other portions of reality. See, for example, 'How to track absolutely everything' at http://www.referent-tracking.com/_RTU/papers/CeustersICbookRevised.pdf</obo:IAO_0000116>
<obo:IAO_0000600 xml:lang="en">An entity is anything that exists or has existed or will exist. (axiom label in BFO2 Reference: [001-001])</obo:IAO_0000600>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/bfo.owl"/>
<rdfs:label xml:lang="en">entity</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000001"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000116"/>
<owl:annotatedTarget xml:lang="en">Entity doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. For example Werner Ceusters 'portions of reality' include 4 sorts, entities (as BFO construes them), universals, configurations, and relations. It is an open question as to whether entities as construed in BFO will at some point also include these other portions of reality. See, for example, 'How to track absolutely everything' at http://www.referent-tracking.com/_RTU/papers/CeustersICbookRevised.pdf</owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/0000004"/>
<rdfs:comment>per discussion with Barry Smith</rdfs:comment>
<rdfs:seeAlso rdf:resource="http://www.referent-tracking.com/_RTU/papers/CeustersICbookRevised.pdf"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000001"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000600"/>
<owl:annotatedTarget xml:lang="en">An entity is anything that exists or has existed or will exist. (axiom label in BFO2 Reference: [001-001])</owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/001-001"/>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/BFO_0000002 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000002">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000001"/>
<owl:disjointWith rdf:resource="http://purl.obolibrary.org/obo/BFO_0000003"/>
<owl:disjointWith>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/BFO_0000003"/>
</owl:Restriction>
</owl:disjointWith>
<obo:BFO_0000179>continuant</obo:BFO_0000179>
<obo:BFO_0000180>Continuant</obo:BFO_0000180>
<obo:IAO_0000115 xml:lang="en">An entity that exists in full at any time in which it exists at all, persists through time while maintaining its identity and has no temporal parts.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">BFO 2 Reference: Continuant entities are entities which can be sliced to yield parts only along the spatial dimension, yielding for example the parts of your table which we call its legs, its top, its nails. ‘My desk stretches from the window to the door. It has spatial parts, and can be sliced (in space) in two. With respect to time, however, a thing is a continuant.’ [60, p. 240</obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">Continuant doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. For example, in an expansion involving bringing in some of Ceuster's other portions of reality, questions are raised as to whether universals are continuants</obo:IAO_0000116>
<obo:IAO_0000600 xml:lang="en">A continuant is an entity that persists, endures, or continues to exist through time while maintaining its identity. (axiom label in BFO2 Reference: [008-002])</obo:IAO_0000600>
<obo:IAO_0000601 xml:lang="en">if b is a continuant and if, for some t, c has_continuant_part b at t, then c is a continuant. (axiom label in BFO2 Reference: [126-001])</obo:IAO_0000601>
<obo:IAO_0000601 xml:lang="en">if b is a continuant and if, for some t, cis continuant_part of b at t, then c is a continuant. (axiom label in BFO2 Reference: [009-002])</obo:IAO_0000601>
<obo:IAO_0000601 xml:lang="en">if b is a material entity, then there is some temporal interval (referred to below as a one-dimensional temporal region) during which b exists. (axiom label in BFO2 Reference: [011-002])</obo:IAO_0000601>
<obo:IAO_0000602>(forall (x y) (if (and (Continuant x) (exists (t) (continuantPartOfAt y x t))) (Continuant y))) // axiom label in BFO2 CLIF: [009-002] </obo:IAO_0000602>
<obo:IAO_0000602>(forall (x y) (if (and (Continuant x) (exists (t) (hasContinuantPartOfAt y x t))) (Continuant y))) // axiom label in BFO2 CLIF: [126-001] </obo:IAO_0000602>
<obo:IAO_0000602>(forall (x) (if (Continuant x) (Entity x))) // axiom label in BFO2 CLIF: [008-002] </obo:IAO_0000602>
<obo:IAO_0000602>(forall (x) (if (Material Entity x) (exists (t) (and (TemporalRegion t) (existsAt x t))))) // axiom label in BFO2 CLIF: [011-002] </obo:IAO_0000602>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/bfo.owl"/>
<rdfs:label xml:lang="en">continuant</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000002"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000116"/>
<owl:annotatedTarget xml:lang="en">Continuant doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. For example, in an expansion involving bringing in some of Ceuster's other portions of reality, questions are raised as to whether universals are continuants</owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/0000007"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000002"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000600"/>
<owl:annotatedTarget xml:lang="en">A continuant is an entity that persists, endures, or continues to exist through time while maintaining its identity. (axiom label in BFO2 Reference: [008-002])</owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/008-002"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000002"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000601"/>
<owl:annotatedTarget xml:lang="en">if b is a continuant and if, for some t, c has_continuant_part b at t, then c is a continuant. (axiom label in BFO2 Reference: [126-001])</owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/126-001"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000002"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000601"/>
<owl:annotatedTarget xml:lang="en">if b is a continuant and if, for some t, cis continuant_part of b at t, then c is a continuant. (axiom label in BFO2 Reference: [009-002])</owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/009-002"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000002"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000601"/>
<owl:annotatedTarget xml:lang="en">if b is a material entity, then there is some temporal interval (referred to below as a one-dimensional temporal region) during which b exists. (axiom label in BFO2 Reference: [011-002])</owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/011-002"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000002"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000602"/>
<owl:annotatedTarget>(forall (x y) (if (and (Continuant x) (exists (t) (continuantPartOfAt y x t))) (Continuant y))) // axiom label in BFO2 CLIF: [009-002] </owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/009-002"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000002"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000602"/>
<owl:annotatedTarget>(forall (x y) (if (and (Continuant x) (exists (t) (hasContinuantPartOfAt y x t))) (Continuant y))) // axiom label in BFO2 CLIF: [126-001] </owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/126-001"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000002"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000602"/>
<owl:annotatedTarget>(forall (x) (if (Continuant x) (Entity x))) // axiom label in BFO2 CLIF: [008-002] </owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/008-002"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000002"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000602"/>
<owl:annotatedTarget>(forall (x) (if (Material Entity x) (exists (t) (and (TemporalRegion t) (existsAt x t))))) // axiom label in BFO2 CLIF: [011-002] </owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/011-002"/>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/BFO_0000003 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000003">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000001"/>
<owl:disjointWith>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/BFO_0000002"/>
</owl:Restriction>
</owl:disjointWith>
<obo:BFO_0000179>occurrent</obo:BFO_0000179>
<obo:BFO_0000180>Occurrent</obo:BFO_0000180>
<obo:IAO_0000115 xml:lang="en">An entity that has temporal parts and that happens, unfolds or develops through time.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">BFO 2 Reference: every occurrent that is not a temporal or spatiotemporal region is s-dependent on some independent continuant that is not a spatial region</obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">BFO 2 Reference: s-dependence obtains between every process and its participants in the sense that, as a matter of necessity, this process could not have existed unless these or those participants existed also. A process may have a succession of participants at different phases of its unfolding. Thus there may be different players on the field at different times during the course of a football game; but the process which is the entire game s-depends_on all of these players nonetheless. Some temporal parts of this process will s-depend_on on only some of the players.</obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">Occurrent doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. An example would be the sum of a process and the process boundary of another process.</obo:IAO_0000116>
<obo:IAO_0000116>Simons uses different terminology for relations of occurrents to regions: Denote the spatio-temporal location of a given occurrent e by 'spn[e]' and call this region its span. We may say an occurrent is at its span, in any larger region, and covers any smaller region. Now suppose we have fixed a frame of reference so that we can speak not merely of spatio-temporal but also of spatial regions (places) and temporal regions (times). The spread of an occurrent, (relative to a frame of reference) is the space it exactly occupies, and its spell is likewise the time it exactly occupies. We write 'spr[e]' and `spl[e]' respectively for the spread and spell of e, omitting mention of the frame.</obo:IAO_0000116>
<obo:IAO_0000600 xml:lang="en">An occurrent is an entity that unfolds itself in time or it is the instantaneous boundary of such an entity (for example a beginning or an ending) or it is a temporal or spatiotemporal region which such an entity occupies_temporal_region or occupies_spatiotemporal_region. (axiom label in BFO2 Reference: [077-002])</obo:IAO_0000600>
<obo:IAO_0000601 xml:lang="en">Every occurrent occupies_spatiotemporal_region some spatiotemporal region. (axiom label in BFO2 Reference: [108-001])</obo:IAO_0000601>
<obo:IAO_0000601 xml:lang="en">b is an occurrent entity iff b is an entity that has temporal parts. (axiom label in BFO2 Reference: [079-001])</obo:IAO_0000601>
<obo:IAO_0000602>(forall (x) (if (Occurrent x) (exists (r) (and (SpatioTemporalRegion r) (occupiesSpatioTemporalRegion x r))))) // axiom label in BFO2 CLIF: [108-001] </obo:IAO_0000602>
<obo:IAO_0000602>(forall (x) (iff (Occurrent x) (and (Entity x) (exists (y) (temporalPartOf y x))))) // axiom label in BFO2 CLIF: [079-001] </obo:IAO_0000602>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/bfo.owl"/>
<rdfs:label xml:lang="en">occurrent</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000003"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000116"/>
<owl:annotatedTarget xml:lang="en">Occurrent doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. An example would be the sum of a process and the process boundary of another process.</owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/0000006"/>
<rdfs:comment>per discussion with Barry Smith</rdfs:comment>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000003"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000116"/>
<owl:annotatedTarget>Simons uses different terminology for relations of occurrents to regions: Denote the spatio-temporal location of a given occurrent e by 'spn[e]' and call this region its span. We may say an occurrent is at its span, in any larger region, and covers any smaller region. Now suppose we have fixed a frame of reference so that we can speak not merely of spatio-temporal but also of spatial regions (places) and temporal regions (times). The spread of an occurrent, (relative to a frame of reference) is the space it exactly occupies, and its spell is likewise the time it exactly occupies. We write 'spr[e]' and `spl[e]' respectively for the spread and spell of e, omitting mention of the frame.</owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/0000012"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000003"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000600"/>
<owl:annotatedTarget xml:lang="en">An occurrent is an entity that unfolds itself in time or it is the instantaneous boundary of such an entity (for example a beginning or an ending) or it is a temporal or spatiotemporal region which such an entity occupies_temporal_region or occupies_spatiotemporal_region. (axiom label in BFO2 Reference: [077-002])</owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/077-002"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000003"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000601"/>
<owl:annotatedTarget xml:lang="en">Every occurrent occupies_spatiotemporal_region some spatiotemporal region. (axiom label in BFO2 Reference: [108-001])</owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/108-001"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000003"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000601"/>
<owl:annotatedTarget xml:lang="en">b is an occurrent entity iff b is an entity that has temporal parts. (axiom label in BFO2 Reference: [079-001])</owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/079-001"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000003"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000602"/>
<owl:annotatedTarget>(forall (x) (if (Occurrent x) (exists (r) (and (SpatioTemporalRegion r) (occupiesSpatioTemporalRegion x r))))) // axiom label in BFO2 CLIF: [108-001] </owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/108-001"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000003"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000602"/>
<owl:annotatedTarget>(forall (x) (iff (Occurrent x) (and (Entity x) (exists (y) (temporalPartOf y x))))) // axiom label in BFO2 CLIF: [079-001] </owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/079-001"/>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/BFO_0000004 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000004">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000002"/>
<owl:disjointWith rdf:resource="http://purl.obolibrary.org/obo/BFO_0000020"/>
<owl:disjointWith rdf:resource="http://purl.obolibrary.org/obo/BFO_0000031"/>
<obo:BFO_0000179>ic</obo:BFO_0000179>
<obo:BFO_0000180>IndependentContinuant</obo:BFO_0000180>
<obo:IAO_0000112 xml:lang="en">a chair</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">a heart</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">a leg</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">a molecule</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">a spatial region</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">an atom</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">an orchestra.</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">an organism</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the bottom right portion of a human torso</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the interior of your mouth</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">A continuant that is a bearer of quality and realizable entity entities, in which other entities inhere and which itself cannot inhere in anything.</obo:IAO_0000115>
<obo:IAO_0000115 xml:lang="en">b is an independent continuant = Def. b is a continuant which is such that there is no c and no t such that b s-depends_on c at t. (axiom label in BFO2 Reference: [017-002])</obo:IAO_0000115>
<obo:IAO_0000601 xml:lang="en">For any independent continuant b and any time t there is some spatial region r such that b is located_in r at t. (axiom label in BFO2 Reference: [134-001])</obo:IAO_0000601>
<obo:IAO_0000601 xml:lang="en">For every independent continuant b and time t during the region of time spanned by its life, there are entities which s-depends_on b during t. (axiom label in BFO2 Reference: [018-002])</obo:IAO_0000601>
<obo:IAO_0000602>(forall (x t) (if (IndependentContinuant x) (exists (r) (and (SpatialRegion r) (locatedInAt x r t))))) // axiom label in BFO2 CLIF: [134-001] </obo:IAO_0000602>
<obo:IAO_0000602>(forall (x t) (if (and (IndependentContinuant x) (existsAt x t)) (exists (y) (and (Entity y) (specificallyDependsOnAt y x t))))) // axiom label in BFO2 CLIF: [018-002] </obo:IAO_0000602>
<obo:IAO_0000602>(iff (IndependentContinuant a) (and (Continuant a) (not (exists (b t) (specificallyDependsOnAt a b t))))) // axiom label in BFO2 CLIF: [017-002] </obo:IAO_0000602>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/bfo.owl"/>
<rdfs:label xml:lang="en">independent continuant</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000004"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000602"/>
<owl:annotatedTarget>(iff (IndependentContinuant a) (and (Continuant a) (not (exists (b t) (specificallyDependsOnAt a b t))))) // axiom label in BFO2 CLIF: [017-002] </owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/017-002"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000004"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget xml:lang="en">b is an independent continuant = Def. b is a continuant which is such that there is no c and no t such that b s-depends_on c at t. (axiom label in BFO2 Reference: [017-002])</owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/017-002"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000004"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000601"/>
<owl:annotatedTarget xml:lang="en">For any independent continuant b and any time t there is some spatial region r such that b is located_in r at t. (axiom label in BFO2 Reference: [134-001])</owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/134-001"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000004"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000601"/>
<owl:annotatedTarget xml:lang="en">For every independent continuant b and time t during the region of time spanned by its life, there are entities which s-depends_on b during t. (axiom label in BFO2 Reference: [018-002])</owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/018-002"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000004"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000602"/>
<owl:annotatedTarget>(forall (x t) (if (IndependentContinuant x) (exists (r) (and (SpatialRegion r) (locatedInAt x r t))))) // axiom label in BFO2 CLIF: [134-001] </owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/134-001"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000004"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000602"/>
<owl:annotatedTarget>(forall (x t) (if (and (IndependentContinuant x) (existsAt x t)) (exists (y) (and (Entity y) (specificallyDependsOnAt y x t))))) // axiom label in BFO2 CLIF: [018-002] </owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/018-002"/>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/BFO_0000005 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000005">
<rdfs:subClassOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
<obo:IAO_0000115 xml:lang="en">A continuant that is either dependent on one or other independent continuant bearers or inheres in or is borne by other entities.</obo:IAO_0000115>
<rdfs:label xml:lang="en">obsolete dependent continuant</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/BFO_0000006 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000006">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000141"/>
<rdfs:label xml:lang="en">spatial region</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/BFO_0000015 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000015">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000003"/>
<obo:BFO_0000179>process</obo:BFO_0000179>
<obo:BFO_0000180>Process</obo:BFO_0000180>
<obo:IAO_0000112 xml:lang="en">a process of cell-division, \ a beating of the heart</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">a process of meiosis</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">a process of sleeping</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the course of a disease</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the flight of a bird</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the life of an organism</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">your process of aging.</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">An occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t.</obo:IAO_0000115>
<obo:IAO_0000115 xml:lang="en">p is a process = Def. p is an occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t. (axiom label in BFO2 Reference: [083-003])</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">BFO 2 Reference: The realm of occurrents is less pervasively marked by the presence of natural units than is the case in the realm of independent continuants. Thus there is here no counterpart of ‘object’. In BFO 1.0 ‘process’ served as such a counterpart. In BFO 2.0 ‘process’ is, rather, the occurrent counterpart of ‘material entity’. Those natural – as contrasted with engineered, which here means: deliberately executed – units which do exist in the realm of occurrents are typically either parasitic on the existence of natural units on the continuant side, or they are fiat in nature. Thus we can count lives; we can count football games; we can count chemical reactions performed in experiments or in chemical manufacturing. We cannot count the processes taking place, for instance, in an episode of insect mating behavior.Even where natural units are identifiable, for example cycles in a cyclical process such as the beating of a heart or an organism’s sleep/wake cycle, the processes in question form a sequence with no discontinuities (temporal gaps) of the sort that we find for instance where billiard balls or zebrafish or planets are separated by clear spatial gaps. Lives of organisms are process units, but they too unfold in a continuous series from other, prior processes such as fertilization, and they unfold in turn in continuous series of post-life processes such as post-mortem decay. Clear examples of boundaries of processes are almost always of the fiat sort (midnight, a time of death as declared in an operating theater or on a death certificate, the initiation of a state of war)</obo:IAO_0000116>
<obo:IAO_0000602>(iff (Process a) (and (Occurrent a) (exists (b) (properTemporalPartOf b a)) (exists (c t) (and (MaterialEntity c) (specificallyDependsOnAt a c t))))) // axiom label in BFO2 CLIF: [083-003] </obo:IAO_0000602>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/bfo.owl"/>
<rdfs:label xml:lang="en">process</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000015"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget xml:lang="en">p is a process = Def. p is an occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t. (axiom label in BFO2 Reference: [083-003])</owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/083-003"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000015"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000602"/>
<owl:annotatedTarget>(iff (Process a) (and (Occurrent a) (exists (b) (properTemporalPartOf b a)) (exists (c t) (and (MaterialEntity c) (specificallyDependsOnAt a c t))))) // axiom label in BFO2 CLIF: [083-003] </owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/083-003"/>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/BFO_0000016 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000016">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000017"/>
<owl:disjointWith rdf:resource="http://purl.obolibrary.org/obo/BFO_0000023"/>
<rdfs:label xml:lang="en">disposition</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/BFO_0000017 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000017">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000020"/>
<owl:disjointWith rdf:resource="http://purl.obolibrary.org/obo/BFO_0000019"/>
<obo:BFO_0000179>realizable</obo:BFO_0000179>
<obo:BFO_0000180>RealizableEntity</obo:BFO_0000180>
<obo:IAO_0000112 xml:lang="en">the disposition of this piece of metal to conduct electricity.</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the disposition of your blood to coagulate</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the function of your reproductive organs</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the role of being a doctor</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the role of this boundary to delineate where Utah and Colorado meet</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">A specifically dependent continuant that inheres in continuant entities and are not exhibited in full at every time in which it inheres in an entity or group of entities. The exhibition or actualization of a realizable entity is a particular manifestation, functioning or process that occurs under certain circumstances.</obo:IAO_0000115>
<obo:IAO_0000117>https://orcid.org/0000-0001-8815-0078</obo:IAO_0000117>
<obo:IAO_0000600 xml:lang="en">To say that b is a realizable entity is to say that b is a specifically dependent continuant that inheres in some independent continuant which is not a spatial region and is of a type instances of which are realized in processes of a correlated type. (axiom label in BFO2 Reference: [058-002])</obo:IAO_0000600>
<obo:IAO_0000601 xml:lang="en">All realizable dependent continuants have independent continuants that are not spatial regions as their bearers. (axiom label in BFO2 Reference: [060-002])</obo:IAO_0000601>
<obo:IAO_0000602>(forall (x t) (if (RealizableEntity x) (exists (y) (and (IndependentContinuant y) (not (SpatialRegion y)) (bearerOfAt y x t))))) // axiom label in BFO2 CLIF: [060-002] </obo:IAO_0000602>
<obo:IAO_0000602>(forall (x) (if (RealizableEntity x) (and (SpecificallyDependentContinuant x) (exists (y) (and (IndependentContinuant y) (not (SpatialRegion y)) (inheresIn x y)))))) // axiom label in BFO2 CLIF: [058-002] </obo:IAO_0000602>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/bfo.owl"/>
<rdfs:label xml:lang="en">realizable entity</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000017"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000600"/>
<owl:annotatedTarget xml:lang="en">To say that b is a realizable entity is to say that b is a specifically dependent continuant that inheres in some independent continuant which is not a spatial region and is of a type instances of which are realized in processes of a correlated type. (axiom label in BFO2 Reference: [058-002])</owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/058-002"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000017"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000601"/>
<owl:annotatedTarget xml:lang="en">All realizable dependent continuants have independent continuants that are not spatial regions as their bearers. (axiom label in BFO2 Reference: [060-002])</owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/060-002"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000017"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000602"/>
<owl:annotatedTarget>(forall (x t) (if (RealizableEntity x) (exists (y) (and (IndependentContinuant y) (not (SpatialRegion y)) (bearerOfAt y x t))))) // axiom label in BFO2 CLIF: [060-002] </owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/060-002"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000017"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000602"/>
<owl:annotatedTarget>(forall (x) (if (RealizableEntity x) (and (SpecificallyDependentContinuant x) (exists (y) (and (IndependentContinuant y) (not (SpatialRegion y)) (inheresIn x y)))))) // axiom label in BFO2 CLIF: [058-002] </owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/058-002"/>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/BFO_0000019 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000019">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000020"/>
<rdfs:label xml:lang="en">quality</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/BFO_0000020 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000020">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000002"/>
<owl:disjointWith rdf:resource="http://purl.obolibrary.org/obo/BFO_0000031"/>
<obo:BFO_0000179>sdc</obo:BFO_0000179>
<obo:BFO_0000180>SpecificallyDependentContinuant</obo:BFO_0000180>
<obo:IAO_0000112 xml:lang="en">Reciprocal specifically dependent continuants: the function of this key to open this lock and the mutually dependent disposition of this lock: to be opened by this key</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">of one-sided specifically dependent continuants: the mass of this tomato</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">of relational dependent continuants (multiple bearers): John’s love for Mary, the ownership relation between John and this statue, the relation of authority between John and his subordinates.</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the disposition of this fish to decay</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the function of this heart: to pump blood</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the mutual dependence of proton donors and acceptors in chemical reactions [79</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the mutual dependence of the role predator and the role prey as played by two organisms in a given interaction</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the pink color of a medium rare piece of grilled filet mignon at its center</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the role of being a doctor</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the shape of this hole.</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the smell of this portion of mozzarella</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">A continuant that inheres in or is borne by other entities. Every instance of A requires some specific instance of B which must always be the same.</obo:IAO_0000115>
<obo:IAO_0000115 xml:lang="en">b is a specifically dependent continuant = Def. b is a continuant & there is some independent continuant c which is not a spatial region and which is such that b s-depends_on c at every time t during the course of b’s existence. (axiom label in BFO2 Reference: [050-003])</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">Specifically dependent continuant doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. We're not sure what else will develop here, but for example there are questions such as what are promises, obligation, etc.</obo:IAO_0000116>
<obo:IAO_0000602>(iff (SpecificallyDependentContinuant a) (and (Continuant a) (forall (t) (if (existsAt a t) (exists (b) (and (IndependentContinuant b) (not (SpatialRegion b)) (specificallyDependsOnAt a b t))))))) // axiom label in BFO2 CLIF: [050-003] </obo:IAO_0000602>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/bfo.owl"/>
<rdfs:label xml:lang="en">specifically dependent continuant</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000020"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget xml:lang="en">b is a specifically dependent continuant = Def. b is a continuant & there is some independent continuant c which is not a spatial region and which is such that b s-depends_on c at every time t during the course of b’s existence. (axiom label in BFO2 Reference: [050-003])</owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/050-003"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000020"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000116"/>
<owl:annotatedTarget xml:lang="en">Specifically dependent continuant doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. We're not sure what else will develop here, but for example there are questions such as what are promises, obligation, etc.</owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/0000005"/>
<rdfs:comment>per discussion with Barry Smith</rdfs:comment>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000020"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000602"/>
<owl:annotatedTarget>(iff (SpecificallyDependentContinuant a) (and (Continuant a) (forall (t) (if (existsAt a t) (exists (b) (and (IndependentContinuant b) (not (SpatialRegion b)) (specificallyDependsOnAt a b t))))))) // axiom label in BFO2 CLIF: [050-003] </owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/050-003"/>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/BFO_0000023 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000023">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000017"/>
<obo:BFO_0000179>role</obo:BFO_0000179>
<obo:BFO_0000180>Role</obo:BFO_0000180>
<obo:IAO_0000112 xml:lang="en">John’s role of husband to Mary is dependent on Mary’s role of wife to John, and both are dependent on the object aggregate comprising John and Mary as member parts joined together through the relational quality of being married.</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the priest role</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the role of a boundary to demarcate two neighboring administrative territories</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the role of a building in serving as a military target</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the role of a stone in marking a property boundary</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the role of subject in a clinical trial</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the student role</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">A realizable entity the manifestation of which brings about some result or end that is not essential to a continuant in virtue of the kind of thing that it is but that can be served or participated in by that kind of continuant in some kinds of natural, social or institutional contexts.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">BFO 2 Reference: One major family of examples of non-rigid universals involves roles, and ontologies developed for corresponding administrative purposes may consist entirely of representatives of entities of this sort. Thus ‘professor’, defined as follows,b instance_of professor at t =Def. there is some c, c instance_of professor role & c inheres_in b at t.denotes a non-rigid universal and so also do ‘nurse’, ‘student’, ‘colonel’, ‘taxpayer’, and so forth. (These terms are all, in the jargon of philosophy, phase sortals.) By using role terms in definitions, we can create a BFO conformant treatment of such entities drawing on the fact that, while an instance of professor may be simultaneously an instance of trade union member, no instance of the type professor role is also (at any time) an instance of the type trade union member role (any more than any instance of the type color is at any time an instance of the type length).If an ontology of employment positions should be defined in terms of roles following the above pattern, this enables the ontology to do justice to the fact that individuals instantiate the corresponding universals – professor, sergeant, nurse – only during certain phases in their lives.</obo:IAO_0000116>
<obo:IAO_0000600 xml:lang="en">b is a role means: b is a realizable entity & b exists because there is some single bearer that is in some special physical, social, or institutional set of circumstances in which this bearer does not have to be& b is not such that, if it ceases to exist, then the physical make-up of the bearer is thereby changed. (axiom label in BFO2 Reference: [061-001])</obo:IAO_0000600>
<obo:IAO_0000602>(forall (x) (if (Role x) (RealizableEntity x))) // axiom label in BFO2 CLIF: [061-001] </obo:IAO_0000602>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/bfo.owl"/>
<rdfs:label xml:lang="en">role</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000023"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000600"/>
<owl:annotatedTarget xml:lang="en">b is a role means: b is a realizable entity & b exists because there is some single bearer that is in some special physical, social, or institutional set of circumstances in which this bearer does not have to be& b is not such that, if it ceases to exist, then the physical make-up of the bearer is thereby changed. (axiom label in BFO2 Reference: [061-001])</owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/061-001"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000023"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000602"/>
<owl:annotatedTarget>(forall (x) (if (Role x) (RealizableEntity x))) // axiom label in BFO2 CLIF: [061-001] </owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/061-001"/>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/BFO_0000027 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000027">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
<obo:BFO_0000179>object-aggregate</obo:BFO_0000179>
<obo:BFO_0000180>ObjectAggregate</obo:BFO_0000180>
<obo:IAO_0000112 xml:lang="en">a collection of cells in a blood biobank.</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">a swarm of bees is an aggregate of members who are linked together through natural bonds</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">a symphony orchestra</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">an organization is an aggregate whose member parts have roles of specific types (for example in a jazz band, a chess club, a football team)</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">defined by fiat: the aggregate of members of an organization</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">defined through physical attachment: the aggregate of atoms in a lump of granite</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">defined through physical containment: the aggregate of molecules of carbon dioxide in a sealed container</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">defined via attributive delimitations such as: the patients in this hospital</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the aggregate of bearings in a constant velocity axle joint</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the aggregate of blood cells in your body</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the nitrogen atoms in the atmosphere</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the restaurants in Palo Alto</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">your collection of Meissen ceramic plates.</obo:IAO_0000112>
<obo:IAO_0000116>An entity a is an object aggregate if and only if there is a mutually exhaustive and pairwise disjoint partition of a into objects </obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">BFO 2 Reference: object aggregates may gain and lose parts while remaining numerically identical (one and the same individual) over time. This holds both for aggregates whose membership is determined naturally (the aggregate of cells in your body) and aggregates determined by fiat (a baseball team, a congressional committee).</obo:IAO_0000116>
<obo:IAO_0000119>ISBN:978-3-938793-98-5pp124-158#Thomas Bittner and Barry Smith, 'A Theory of Granular Partitions', in K. Munn and B. Smith (eds.), Applied Ontology: An Introduction, Frankfurt/Lancaster: ontos, 2008, 125-158.</obo:IAO_0000119>
<obo:IAO_0000600 xml:lang="en">b is an object aggregate means: b is a material entity consisting exactly of a plurality of objects as member_parts at all times at which b exists. (axiom label in BFO2 Reference: [025-004])</obo:IAO_0000600>
<obo:IAO_0000602>(forall (x) (if (ObjectAggregate x) (and (MaterialEntity x) (forall (t) (if (existsAt x t) (exists (y z) (and (Object y) (Object z) (memberPartOfAt y x t) (memberPartOfAt z x t) (not (= y z)))))) (not (exists (w t_1) (and (memberPartOfAt w x t_1) (not (Object w)))))))) // axiom label in BFO2 CLIF: [025-004] </obo:IAO_0000602>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/bfo.owl"/>
<rdfs:label xml:lang="en">object aggregate</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000027"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000116"/>
<owl:annotatedTarget>An entity a is an object aggregate if and only if there is a mutually exhaustive and pairwise disjoint partition of a into objects </owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/0000011"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000027"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000116"/>
<owl:annotatedTarget>An entity a is an object aggregate if and only if there is a mutually exhaustive and pairwise disjoint partition of a into objects </owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/0000301"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000027"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000119"/>
<owl:annotatedTarget>ISBN:978-3-938793-98-5pp124-158#Thomas Bittner and Barry Smith, 'A Theory of Granular Partitions', in K. Munn and B. Smith (eds.), Applied Ontology: An Introduction, Frankfurt/Lancaster: ontos, 2008, 125-158.</owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/0000300"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000027"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000600"/>
<owl:annotatedTarget xml:lang="en">b is an object aggregate means: b is a material entity consisting exactly of a plurality of objects as member_parts at all times at which b exists. (axiom label in BFO2 Reference: [025-004])</owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/025-004"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000027"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000602"/>
<owl:annotatedTarget>(forall (x) (if (ObjectAggregate x) (and (MaterialEntity x) (forall (t) (if (existsAt x t) (exists (y z) (and (Object y) (Object z) (memberPartOfAt y x t) (memberPartOfAt z x t) (not (= y z)))))) (not (exists (w t_1) (and (memberPartOfAt w x t_1) (not (Object w)))))))) // axiom label in BFO2 CLIF: [025-004] </owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/025-004"/>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/BFO_0000029 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000029">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000141"/>
<obo:BFO_0000179>site</obo:BFO_0000179>
<obo:BFO_0000180>Site</obo:BFO_0000180>
<obo:IAO_0000112 xml:lang="en">Manhattan Canyon)</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">a hole in the interior of a portion of cheese</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">a rabbit hole</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">an air traffic control region defined in the airspace above an airport</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the Grand Canyon</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the Piazza San Marco</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the cockpit of an aircraft</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the hold of a ship</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the interior of a kangaroo pouch</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the interior of the trunk of your car</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the interior of your bedroom</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the interior of your office</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the interior of your refrigerator</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the lumen of your gut</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">your left nostril (a fiat part – the opening – of your left nasal cavity)</obo:IAO_0000112>
<obo:IAO_0000600 xml:lang="en">b is a site means: b is a three-dimensional immaterial entity that is (partially or wholly) bounded by a material entity or it is a three-dimensional immaterial part thereof. (axiom label in BFO2 Reference: [034-002])</obo:IAO_0000600>
<obo:IAO_0000602>(forall (x) (if (Site x) (ImmaterialEntity x))) // axiom label in BFO2 CLIF: [034-002] </obo:IAO_0000602>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/bfo.owl"/>
<rdfs:label xml:lang="en">site</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000029"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000600"/>
<owl:annotatedTarget xml:lang="en">b is a site means: b is a three-dimensional immaterial entity that is (partially or wholly) bounded by a material entity or it is a three-dimensional immaterial part thereof. (axiom label in BFO2 Reference: [034-002])</owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/034-002"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000029"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000602"/>
<owl:annotatedTarget>(forall (x) (if (Site x) (ImmaterialEntity x))) // axiom label in BFO2 CLIF: [034-002] </owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/034-002"/>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/BFO_0000031 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000031">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000002"/>
<obo:BFO_0000179>gdc</obo:BFO_0000179>
<obo:BFO_0000180>GenericallyDependentContinuant</obo:BFO_0000180>
<obo:IAO_0000112 xml:lang="en">The entries in your database are patterns instantiated as quality instances in your hard drive. The database itself is an aggregate of such patterns. When you create the database you create a particular instance of the generically dependent continuant type database. Each entry in the database is an instance of the generically dependent continuant type IAO: information content entity.</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the pdf file on your laptop, the pdf file that is a copy thereof on my laptop</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the sequence of this protein molecule; the sequence that is a copy thereof in that protein molecule.</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">A continuant that is dependent on one or other independent continuant bearers. For every instance of A requires some instance of (an independent continuant type) B but which instance of B serves can change from time to time.</obo:IAO_0000115>
<obo:IAO_0000115 xml:lang="en">b is a generically dependent continuant = Def. b is a continuant that g-depends_on one or more other entities. (axiom label in BFO2 Reference: [074-001])</obo:IAO_0000115>
<obo:IAO_0000602>(iff (GenericallyDependentContinuant a) (and (Continuant a) (exists (b t) (genericallyDependsOnAt a b t)))) // axiom label in BFO2 CLIF: [074-001] </obo:IAO_0000602>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/bfo.owl"/>
<rdfs:label xml:lang="en">generically dependent continuant</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000031"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget xml:lang="en">b is a generically dependent continuant = Def. b is a continuant that g-depends_on one or more other entities. (axiom label in BFO2 Reference: [074-001])</owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/074-001"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000031"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000602"/>
<owl:annotatedTarget>(iff (GenericallyDependentContinuant a) (and (Continuant a) (exists (b t) (genericallyDependsOnAt a b t)))) // axiom label in BFO2 CLIF: [074-001] </owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/074-001"/>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/BFO_0000034 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000034">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000016"/>
<rdfs:label xml:lang="en">function</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/BFO_0000040 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000040">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000004"/>
<owl:disjointWith rdf:resource="http://purl.obolibrary.org/obo/BFO_0000141"/>
<obo:BFO_0000179>material</obo:BFO_0000179>
<obo:BFO_0000180>MaterialEntity</obo:BFO_0000180>
<obo:IAO_0000112 xml:lang="en">a flame</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">a forest fire</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">a human being</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">a hurricane</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">a photon</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">a puff of smoke</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">a sea wave</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">a tornado</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">an aggregate of human beings.</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">an energy wave</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">an epidemic</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">the undetached arm of a human being</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">An independent continuant that is spatially extended whose identity is independent of that of other entities and can be maintained through time.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">BFO 2 Reference: Material entities (continuants) can preserve their identity even while gaining and losing material parts. Continuants are contrasted with occurrents, which unfold themselves in successive temporal parts or phases [60</obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">BFO 2 Reference: Object, Fiat Object Part and Object Aggregate are not intended to be exhaustive of Material Entity. Users are invited to propose new subcategories of Material Entity.</obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">BFO 2 Reference: ‘Matter’ is intended to encompass both mass and energy (we will address the ontological treatment of portions of energy in a later version of BFO). A portion of matter is anything that includes elementary particles among its proper or improper parts: quarks and leptons, including electrons, as the smallest particles thus far discovered; baryons (including protons and neutrons) at a higher level of granularity; atoms and molecules at still higher levels, forming the cells, organs, organisms and other material entities studied by biologists, the portions of rock studied by geologists, the fossils studied by paleontologists, and so on.Material entities are three-dimensional entities (entities extended in three spatial dimensions), as contrasted with the processes in which they participate, which are four-dimensional entities (entities extended also along the dimension of time).According to the FMA, material entities may have immaterial entities as parts – including the entities identified below as sites; for example the interior (or ‘lumen’) of your small intestine is a part of your body. BFO 2.0 embodies a decision to follow the FMA here.</obo:IAO_0000116>
<obo:IAO_0000600 xml:lang="en">A material entity is an independent continuant that has some portion of matter as proper or improper continuant part. (axiom label in BFO2 Reference: [019-002])</obo:IAO_0000600>
<obo:IAO_0000601 xml:lang="en">Every entity which has a material entity as continuant part is a material entity. (axiom label in BFO2 Reference: [020-002])</obo:IAO_0000601>
<obo:IAO_0000601 xml:lang="en">every entity of which a material entity is continuant part is also a material entity. (axiom label in BFO2 Reference: [021-002])</obo:IAO_0000601>
<obo:IAO_0000602>(forall (x) (if (MaterialEntity x) (IndependentContinuant x))) // axiom label in BFO2 CLIF: [019-002] </obo:IAO_0000602>
<obo:IAO_0000602>(forall (x) (if (and (Entity x) (exists (y t) (and (MaterialEntity y) (continuantPartOfAt x y t)))) (MaterialEntity x))) // axiom label in BFO2 CLIF: [021-002] </obo:IAO_0000602>
<obo:IAO_0000602>(forall (x) (if (and (Entity x) (exists (y t) (and (MaterialEntity y) (continuantPartOfAt y x t)))) (MaterialEntity x))) // axiom label in BFO2 CLIF: [020-002] </obo:IAO_0000602>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/bfo.owl"/>
<rdfs:label xml:lang="en">material entity</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000600"/>
<owl:annotatedTarget xml:lang="en">A material entity is an independent continuant that has some portion of matter as proper or improper continuant part. (axiom label in BFO2 Reference: [019-002])</owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/019-002"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000601"/>
<owl:annotatedTarget xml:lang="en">Every entity which has a material entity as continuant part is a material entity. (axiom label in BFO2 Reference: [020-002])</owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/020-002"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000601"/>
<owl:annotatedTarget xml:lang="en">every entity of which a material entity is continuant part is also a material entity. (axiom label in BFO2 Reference: [021-002])</owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/021-002"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000602"/>
<owl:annotatedTarget>(forall (x) (if (MaterialEntity x) (IndependentContinuant x))) // axiom label in BFO2 CLIF: [019-002] </owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/019-002"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000602"/>
<owl:annotatedTarget>(forall (x) (if (and (Entity x) (exists (y t) (and (MaterialEntity y) (continuantPartOfAt x y t)))) (MaterialEntity x))) // axiom label in BFO2 CLIF: [021-002] </owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/021-002"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000602"/>
<owl:annotatedTarget>(forall (x) (if (and (Entity x) (exists (y t) (and (MaterialEntity y) (continuantPartOfAt y x t)))) (MaterialEntity x))) // axiom label in BFO2 CLIF: [020-002] </owl:annotatedTarget>
<obo:IAO_0010000 rdf:resource="http://purl.obolibrary.org/obo/bfo/axiom/020-002"/>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/BFO_0000141 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000141">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000004"/>
<obo:BFO_0000179>immaterial</obo:BFO_0000179>
<obo:BFO_0000180>ImmaterialEntity</obo:BFO_0000180>
<obo:IAO_0000116 xml:lang="en">BFO 2 Reference: Immaterial entities are divided into two subgroups:boundaries and sites, which bound, or are demarcated in relation, to material entities, and which can thus change location, shape and size and as their material hosts move or change shape or size (for example: your nasal passage; the hold of a ship; the boundary of Wales (which moves with the rotation of the Earth) [38, 7, 10</obo:IAO_0000116>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/bfo.owl"/>
<rdfs:label xml:lang="en">immaterial entity</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/CARO_0000012 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/CARO_0000012">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CARO_0010004"/>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Anatomical structure that is an individual member of a clade and, at some point in its life-cycle, consists of more than one cell.</obo:IAO_0000115>
<obo:IAO_0000589 xml:lang="en">multicellular organism</obo:IAO_0000589>
<obo:IAO_created_by rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Melissa Haendel</obo:IAO_created_by>
<obo:IAO_creation_date rdf:datatype="http://www.w3.org/2001/XMLSchema#string">9/18/11</obo:IAO_creation_date>
<rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MH: Can't define this class based on 2 or more cells because most multi cellular organisms (if not all) have only a single cell at some point in life history.</rdfs:comment>
<rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MH: sexual subtypes should probably be logically defined based on sexual processes or sex qualities.</rdfs:comment>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">multicellular organism</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/CARO_0001010 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/CARO_0001010">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PCO_0000031"/>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Material anatomical entity that is a member of an individual species or is a viral or viroid particle.</obo:IAO_0000115>
<obo:IAO_0000589 xml:lang="en">organism or virus</obo:IAO_0000589>
<obo:IAO_created_by rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Melissa Haendel</obo:IAO_created_by>
<obo:IAO_creation_date rdf:datatype="http://www.w3.org/2001/XMLSchema#string">9/18/11</obo:IAO_creation_date>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">organism or virus or viroid</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/CARO_0010004 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/CARO_0010004">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CARO_0001010"/>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">An individual member of a clade.</obo:IAO_0000115>
<obo:IAO_0000589 xml:lang="en">organism</obo:IAO_0000589>
<obo:IAO_created_by rdf:datatype="http://www.w3.org/2001/XMLSchema#string">mah</obo:IAO_created_by>
<obo:IAO_creation_date rdf:datatype="http://www.w3.org/2001/XMLSchema#string">7.16.2011</obo:IAO_creation_date>
<rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A general term for organism that is agnostic about single cell vs multi-cellular. Note that this is a subclass of 'anatomical structure', meaning that an organism must be a connected structure. So, if I take one plant and make a rooted cutting from a it, I now have two (clonally related) organisms.</rdfs:comment>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">organism</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ECOCORE_00000045 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ECOCORE_00000045">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CARO_0001010"/>
<obo:IAO_0000115>heterotroph that acquires nutrition from a symbiont</obo:IAO_0000115>
<obo:IAO_0000117>http://orcid.org/0000-0002-2908-3327</obo:IAO_0000117>
<rdfs:label>symbiotroph</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ECOCORE_00000146 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ECOCORE_00000146">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ECOCORE_00000045"/>
<obo:IAO_0000115>A symbiotroph that reduces the fitness, survival, or growth of its symbiont, often called a host</obo:IAO_0000115>
<obo:IAO_0000117>http://orcid.org/0000-0002-2908-3327</obo:IAO_0000117>
<oboInOwl:hasDbXref>https://www.wikidata.org/entity/Q10253316</oboInOwl:hasDbXref>
<rdfs:label>parasite</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/ENVO_01000744 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ENVO_01000744">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
<obo:IAO_0000115>A self-contained constructed feature used by one or more households as a home, such as a house, apartment, mobile home, houseboat or other 'substantial' structure. A dwelling typically includes nearby outbuildings, sheds etc. within the curtilage of the property, excluding any 'open fields beyond'. It has significance in relation to search and seizure, conveyancing of real property, burglary, trespass, and land use planning.</obo:IAO_0000115>
<obo:IAO_0000116>See https://github.com/EnvironmentOntology/envo/issues/264 for discussion. This definition needs a lot of clean up and links to household and related classes must be made to form logical definitions for inference to work.</obo:IAO_0000116>
<obo:IAO_0000116>Subclasses will be added by inference.</obo:IAO_0000116>
<rdfs:label xml:lang="en">human dwelling</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/ENVO_01000744"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget>A self-contained constructed feature used by one or more households as a home, such as a house, apartment, mobile home, houseboat or other 'substantial' structure. A dwelling typically includes nearby outbuildings, sheds etc. within the curtilage of the property, excluding any 'open fields beyond'. It has significance in relation to search and seizure, conveyancing of real property, burglary, trespass, and land use planning.</owl:annotatedTarget>
<oboInOwl:hasDbXref>https://en.wikipedia.org/wiki/Dwelling accessed 11/25/2015</oboInOwl:hasDbXref>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/ENVO_01001369 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ENVO_01001369">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
<obo:IAO_0000115>A shrubland biome which is densely vegetated by dwarf or short mangroves (and associates) that are generally less than 6 meters in height, is tidally influenced, is located in tropical or subtropical areas.</obo:IAO_0000115>
<oboInOwl:created_by rdf:resource="http://orcid.org/0000-0002-4366-3088"/>
<oboInOwl:hasAlternativeId>CMECS:577</oboInOwl:hasAlternativeId>
<oboInOwl:hasDbXref>https://cmecscatalog.org/cmecs/classification/unit/577.html</oboInOwl:hasDbXref>
<oboInOwl:inSubset>envoCmecs</oboInOwl:inSubset>
<oboInOwl:inSubset>envoMarine</oboInOwl:inSubset>
<rdfs:comment>This class aligns to the Coastal and Marine Ecological Classification Standard (CMECS). In ENVO, we may adapt the definition for consistency, but the semantics (meaning) of the term should be unaffected. Please consult the CMECS catalogue (https://cmecscatalog.org/) for authoritative and semantically unconstrained definitions. CMECS provides the following notes: "Commonly found on intertidal mud flats along the shores of estuaries. Tidal mangrove shrublands may include immature stands or stunted mature trees that indicate a harsh growing environment. Areas characterized by tall mangroves (> 6 meters) are placed in the Tidal Mangrove Forest Biotic Group. Where tidal amplitude is relatively low, the vegetation forms narrow bands along the coastal plains, and it rarely penetrates inland more than several kilometers along rivers. Where tidal amplitude is greater, mangroves extend further inland along river courses, forming extensive stands in the major river deltas. Also, mangrove cays may occur within the lagoon complex of barrier reefs. The list of biotic communities for this group is long: a few examples are provided below, and the complete list is available in Appendix F"</rdfs:comment>
<rdfs:label xml:lang="en">tidal mangrove shrubland</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/GO_0003674 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0003674">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000015"/>
<obo:IAO_0000589>molecular process</obo:IAO_0000589>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/go.owl"/>
<rdfs:label>molecular_function</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/GO_0003824 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0003824">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GO_0003674"/>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/go.owl"/>
<rdfs:label>catalytic activity</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/GO_0007610 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0007610">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GO_0008150"/>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">The internally coordinated responses (actions or inactions) of animals (individuals or groups) to internal or external stimuli, via a mechanism that involves nervous system activity.</obo:IAO_0000115>
<oboInOwl:created_by rdf:datatype="http://www.w3.org/2001/XMLSchema#string">jl</oboInOwl:created_by>
<oboInOwl:creation_date rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2012-09-20T14:06:08Z</oboInOwl:creation_date>
<oboInOwl:hasAlternativeId rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GO:0023032</oboInOwl:hasAlternativeId>
<oboInOwl:hasAlternativeId rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GO:0044708</oboInOwl:hasAlternativeId>
<oboInOwl:hasAlternativeId rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GO:0044709</oboInOwl:hasAlternativeId>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Wikipedia:Behavior</oboInOwl:hasDbXref>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">behavioral response to stimulus</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">behaviour</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">behavioural response to stimulus</oboInOwl:hasExactSynonym>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">biological_process</oboInOwl:hasOBONamespace>
<oboInOwl:hasRelatedSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">single-organism behavior</oboInOwl:hasRelatedSynonym>
<oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GO:0007610</oboInOwl:id>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/go#gocheck_do_not_manually_annotate"/>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/go#goslim_agr"/>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/go#goslim_flybase_ribbon"/>
<rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">1. Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation reviews.
2. While a broader definition of behavior encompassing plants and single cell organisms would be justified on the basis of some usage (see PMID:20160973 for discussion), GO uses a tight definition that limits behavior to animals and to responses involving the nervous system, excluding plant responses that GO classifies under development, and responses of unicellular organisms that has general classifications for covering the responses of cells in multicellular organisms (e.g. cell chemotaxis).</rdfs:comment>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/go.owl"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">behavior</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/GO_0007610"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">The internally coordinated responses (actions or inactions) of animals (individuals or groups) to internal or external stimuli, via a mechanism that involves nervous system activity.</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GOC:ems</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GOC:jl</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ISBN:0395448956</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PMID:20160973</oboInOwl:hasDbXref>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/GO_0008150 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0008150">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000015"/>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A biological process represents a specific objective that the organism is genetically programmed to achieve. Biological processes are often described by their outcome or ending state, e.g., the biological process of cell division results in the creation of two daughter cells (a divided cell) from a single parent cell. A biological process is accomplished by a particular set of molecular functions carried out by specific gene products (or macromolecular complexes), often in a highly regulated manner and in a particular temporal sequence.</obo:IAO_0000115>
<oboInOwl:created_by rdf:datatype="http://www.w3.org/2001/XMLSchema#string">jl</oboInOwl:created_by>
<oboInOwl:creation_date rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2012-09-19T15:05:24Z</oboInOwl:creation_date>
<oboInOwl:hasAlternativeId rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GO:0000004</oboInOwl:hasAlternativeId>
<oboInOwl:hasAlternativeId rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GO:0007582</oboInOwl:hasAlternativeId>
<oboInOwl:hasAlternativeId rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GO:0044699</oboInOwl:hasAlternativeId>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Wikipedia:Biological_process</oboInOwl:hasDbXref>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">biological process</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">physiological process</oboInOwl:hasExactSynonym>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">biological_process</oboInOwl:hasOBONamespace>
<oboInOwl:hasRelatedSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">single organism process</oboInOwl:hasRelatedSynonym>
<oboInOwl:hasRelatedSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">single-organism process</oboInOwl:hasRelatedSynonym>
<oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GO:0008150</oboInOwl:id>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/go#goslim_aspergillus"/>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/go#goslim_candida"/>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/go#goslim_chembl"/>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/go#goslim_generic"/>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/go#goslim_metagenomics"/>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/go#goslim_pir"/>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/go#goslim_plant"/>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/go#goslim_pombe"/>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/go#goslim_yeast"/>
<rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Note that, in addition to forming the root of the biological process ontology, this term is recommended for use for the annotation of gene products whose biological process is unknown. When this term is used for annotation, it indicates that no information was available about the biological process of the gene product annotated as of the date the annotation was made; the evidence code 'no data' (ND), is used to indicate this.</rdfs:comment>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/go.owl"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">biological_process</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/GO_0008150"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A biological process represents a specific objective that the organism is genetically programmed to achieve. Biological processes are often described by their outcome or ending state, e.g., the biological process of cell division results in the creation of two daughter cells (a divided cell) from a single parent cell. A biological process is accomplished by a particular set of molecular functions carried out by specific gene products (or macromolecular complexes), often in a highly regulated manner and in a particular temporal sequence.</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GOC:pdt</oboInOwl:hasDbXref>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/GO_0016301 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0016301">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GO_0016772"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0002481"/>
<owl:hasSelf rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:hasSelf>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/go.owl"/>
<rdfs:label>kinase activity</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/GO_0016740 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0016740">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GO_0003824"/>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/go.owl"/>
<rdfs:label>transferase activity</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/GO_0016772 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0016772">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GO_0016740"/>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/go.owl"/>
<rdfs:label>transferase activity, transferring phosphorus-containing groups</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/GO_0035176 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0035176">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GO_0007610"/>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GO_0051703"/>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Behavior directed towards society, or taking place between members of the same species. Occurs predominantly, or only, in individuals that are part of a group.</obo:IAO_0000115>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Wikipedia:Social_behavior</oboInOwl:hasDbXref>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">social behaviour</oboInOwl:hasExactSynonym>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">biological_process</oboInOwl:hasOBONamespace>
<oboInOwl:hasRelatedSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">cooperative behavior</oboInOwl:hasRelatedSynonym>
<oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GO:0035176</oboInOwl:id>
<rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Behavior such as predation which involves members of different species is not social. Communication between members of different species is also not social behavior.</rdfs:comment>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/go.owl"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">social behavior</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/GO_0035176"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Behavior directed towards society, or taking place between members of the same species. Occurs predominantly, or only, in individuals that are part of a group.</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GOC:jh2</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PMID:12848939</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Wikipedia:Social_behavior</oboInOwl:hasDbXref>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/GO_0044419 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0044419">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GO_0008150"/>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Any process evolved to enable an interaction with an organism of a different species.</obo:IAO_0000115>
<obo:IAO_0000233 rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">https://github.com/geneontology/go-ontology/issues/20191</obo:IAO_0000233>
<obo:RO_0002161 rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_4895"/>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">interaction with another species</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">interspecies interaction</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">interspecies interaction between organisms</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">interspecies interaction with other organisms</oboInOwl:hasExactSynonym>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">biological_process</oboInOwl:hasOBONamespace>
<oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GO:0044419</oboInOwl:id>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate"/>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/go#goslim_candida"/>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/go#goslim_pir"/>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/go.owl"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">biological process involved in interspecies interaction between organisms</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/GO_0044419"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Any process evolved to enable an interaction with an organism of a different species.</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GOC:cc</oboInOwl:hasDbXref>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/GO_0051703 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0051703">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GO_0008150"/>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Any process in which an organism has an effect on an organism of the same species.</obo:IAO_0000115>
<obo:IAO_0000233 rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">https://github.com/geneontology/go-ontology/issues/20191</obo:IAO_0000233>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">intraspecies interaction between organisms</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">intraspecies interaction with other organisms</oboInOwl:hasExactSynonym>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">biological_process</oboInOwl:hasOBONamespace>
<oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GO:0051703</oboInOwl:id>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate"/>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/go#goslim_pir"/>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/go.owl"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">biological process involved in intraspecies interaction between organisms</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/GO_0051703"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Any process in which an organism has an effect on an organism of the same species.</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GOC:ai</oboInOwl:hasDbXref>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/GO_0051704 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0051704">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GO_0008150"/>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A biological process which involves another organism of the same or different species.</obo:IAO_0000115>
<oboInOwl:hasAlternativeId rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GO:0051706</oboInOwl:hasAlternativeId>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">interaction between organisms</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">physiological interaction between organisms</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">physiological interaction with other organism</oboInOwl:hasExactSynonym>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">biological_process</oboInOwl:hasOBONamespace>
<oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GO:0051704</oboInOwl:id>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate"/>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/go#goslim_pir"/>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/go.owl"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">multi-organism process</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/GO_0051704"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A biological process which involves another organism of the same or different species.</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GOC:jl</oboInOwl:hasDbXref>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/IAO_0000027 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000027">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000030"/>
<obo:IAO_0000111 xml:lang="en">data item</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">Data items include counts of things, analyte concentrations, and statistical summaries.</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
<obo:IAO_0000115 xml:lang="en">a data item is an information content entity that is intended to be a truthful statement about something (modulo, e.g., measurement precision or other systematic errors) and is constructed/acquired by a method which reliably tends to produce (approximately) truthful statements.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">2/2/2009 Alan and Bjoern discussing FACS run output data. This is a data item because it is about the cell population. Each element records an event and is typically further composed a set of measurment data items that record the fluorescent intensity stimulated by one of the lasers.</obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">2009-03-16: data item deliberatly ambiguous: we merged data set and datum to be one entity, not knowing how to define singular versus plural. So data item is more general than datum.</obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">2009-03-16: removed datum as alternative term as datum specifically refers to singular form, and is thus not an exact synonym.</obo:IAO_0000116>
<obo:IAO_0000116>2014-03-31: See discussion at http://odontomachus.wordpress.com/2014/03/30/aboutness-objects-propositions/</obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">JAR: datum -- well, this will be very tricky to define, but maybe some
information-like stuff that might be put into a computer and that is
meant, by someone, to denote and/or to be interpreted by some
process... I would include lists, tables, sentences... I think I might
defer to Barry, or to Brian Cantwell Smith
JAR: A data item is an approximately justified approximately true approximate belief</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">PERSON: Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">PERSON: Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">PERSON: Jonathan Rees</obo:IAO_0000117>
<obo:IAO_0000118 xml:lang="en">data</obo:IAO_0000118>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label xml:lang="en">data item</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000030 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000030">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000031"/>
<obo:IAO_0000111 xml:lang="en">information content entity</obo:IAO_0000111>
<rdfs:label xml:lang="en">information content entity</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000078 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000078">
<owl:equivalentClass>
<owl:Class>
<owl:oneOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/IAO_0000002"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/IAO_0000120"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/IAO_0000121"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/IAO_0000122"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/IAO_0000123"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/IAO_0000124"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/IAO_0000125"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/IAO_0000423"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/IAO_0000428"/>
</owl:oneOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000102"/>
<obo:IAO_0000111 xml:lang="en">curation status specification</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
<obo:IAO_0000115 xml:lang="en">The curation status of the term. The allowed values come from an enumerated list of predefined terms. See the specification of these instances for more detailed definitions of each enumerated value.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">Better to represent curation as a process with parts and then relate labels to that process (in IAO meeting)</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">PERSON:Bill Bug</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">GROUP:OBI:<http://purl.obolibrary.org/obo/obi></obo:IAO_0000119>
<obo:IAO_0000119 xml:lang="en">OBI_0000266</obo:IAO_0000119>
<rdfs:label xml:lang="en">curation status specification</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000102 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000102">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000027"/>
<obo:IAO_0000111 xml:lang="en">data about an ontology part</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">Data about an ontology part is a data item about a part of an ontology, for example a term</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Person:Alan Ruttenberg</obo:IAO_0000117>
<rdfs:label xml:lang="en">data about an ontology part</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000109 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000109">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000027"/>
<obo:IAO_0000111 xml:lang="en">measurement datum</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">Examples of measurement data are the recoding of the weight of a mouse as {40,mass,"grams"}, the recording of an observation of the behavior of the mouse {,process,"agitated"}, the recording of the expression level of a gene as measured through the process of microarray experiment {3.4,luminosity,}.</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
<obo:IAO_0000115 xml:lang="en">A measurement datum is an information content entity that is a recording of the output of a measurement such as produced by a device.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">2/2/2009 is_specified_output of some assay?</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">person:Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">OBI_0000305</obo:IAO_0000119>
<obo:IAO_0000119 xml:lang="en">group:OBI</obo:IAO_0000119>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<rdfs:label xml:lang="en">measurement datum</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000225 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000225">
<owl:equivalentClass>
<owl:Class>
<owl:oneOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/IAO_0000103"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/IAO_0000226"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/IAO_0000227"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/IAO_0000228"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/IAO_0000229"/>
</owl:oneOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000102"/>
<obo:IAO_0000111 xml:lang="en">obsolescence reason specification</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
<obo:IAO_0000115 xml:lang="en">The reason for which a term has been deprecated. The allowed values come from an enumerated list of predefined terms. See the specification of these instances for more detailed definitions of each enumerated value.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">The creation of this class has been inspired in part by Werner Ceusters' paper, Applying evolutionary terminology auditing to the Gene Ontology.</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">PERSON: Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">PERSON: Melanie Courtot</obo:IAO_0000117>
<rdfs:label xml:lang="en">obsolescence reason specification</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000409 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000409">
<owl:equivalentClass>
<owl:Class>
<owl:oneOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/IAO_0000410"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/IAO_0000420"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/IAO_0000421"/>
</owl:oneOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000102"/>
<obo:IAO_0000111 xml:lang="en">denotator type</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">The Basic Formal Ontology ontology makes a distinction between Universals and defined classes, where the formal are "natural kinds" and the latter arbitrary collections of entities.</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">A denotator type indicates how a term should be interpreted from an ontological perspective.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">Barry Smith, Werner Ceusters</obo:IAO_0000119>
<rdfs:label xml:lang="en">denotator type</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_8000000 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_8000000">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000102"/>
<obo:IAO_0000111 xml:lang="en">ontology module</obo:IAO_0000111>
<obo:IAO_0000116 xml:lang="en">I have placed this under 'data about an ontology part', but this can be discussed. I think this is OK if 'part' is interpreted reflexively, as an ontology module is the whole ontology rather than part of it.</obo:IAO_0000116>
<obo:IAO_0000118 xml:lang="en">ontology file</obo:IAO_0000118>
<obo:IAO_0000232 xml:lang="en">This class and it's subclasses are applied to OWL ontologies. Using an rdf:type triple will result in problems with OWL-DL. I propose that dcterms:type is instead used to connect an ontology URI with a class from this hierarchy. The class hierarchy is not disjoint, so multiple assertions can be made about a single ontology.</obo:IAO_0000232>
<rdfs:label xml:lang="en">ontology module</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_8000001 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_8000001">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_8000000"/>
<obo:IAO_0000111 xml:lang="en">base ontology module</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">An ontology module that comprises only of asserted axioms local to the ontology, excludes import directives, and excludes axioms or declarations from external ontologies.</obo:IAO_0000115>
<rdfs:label xml:lang="en">base ontology module</rdfs:label>
<rdfs:seeAlso rdf:resource="https://github.com/INCATools/ontology-starter-kit/issues/50"/>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_8000002 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_8000002">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_8000000"/>
<obo:IAO_0000111 xml:lang="en">editors ontology module</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">An ontology module that is intended to be directly edited, typically managed in source control, and typically not intended for direct consumption by end-users.</obo:IAO_0000115>
<obo:IAO_0000118 xml:lang="en">source ontology module</obo:IAO_0000118>
<rdfs:label xml:lang="en">editors ontology module</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_8000003 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_8000003">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_8000000"/>
<obo:IAO_0000111 xml:lang="en">main release ontology module</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">An ontology module that is intended to be the primary release product and the one consumed by the majority of tools.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">TODO: Add logical axioms that state that a main release ontology module is derived from (directly or indirectly) an editors module</obo:IAO_0000116>
<rdfs:label xml:lang="en">main release ontology module</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_8000004 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_8000004">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_8000000"/>
<obo:IAO_0000111 xml:lang="en">bridge ontology module</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">An ontology module that consists entirely of axioms that connect or bridge two distinct ontology modules. For example, the Uberon-to-ZFA bridge module.</obo:IAO_0000115>
<rdfs:label xml:lang="en">bridge ontology module</rdfs:label>
<rdfs:seeAlso rdf:resource="https://github.com/obophenotype/uberon/wiki/inter-anatomy-ontology-bridge-ontologies"/>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_8000005 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_8000005">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_8000006"/>
<obo:IAO_0000111 xml:lang="en">import ontology module</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">A subset ontology module that is intended to be imported from another ontology.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">TODO: add axioms that indicate this is the output of a module extraction process.</obo:IAO_0000116>
<obo:IAO_0000118 xml:lang="en">import file</obo:IAO_0000118>
<rdfs:label xml:lang="en">import ontology module</rdfs:label>
<rdfs:seeAlso rdf:resource="http://robot.obolibrary.org/extract"/>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_8000006 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_8000006">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_8000000"/>
<obo:IAO_0000111 xml:lang="en">subset ontology module</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">An ontology module that is extracted from a main ontology module and includes only a subset of entities or axioms.</obo:IAO_0000115>
<obo:IAO_0000118 xml:lang="en">ontology slim</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">subset ontology</obo:IAO_0000118>
<rdfs:label xml:lang="en">subset ontology module</rdfs:label>
<rdfs:seeAlso rdf:resource="http://robot.obolibrary.org/filter"/>
<rdfs:seeAlso rdf:resource="http://www.geneontology.org/page/go-slim-and-subset-guide"/>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_8000007 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_8000007">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_8000006"/>
<obo:IAO_0000111 xml:lang="en">curation subset ontology module</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">A subset ontology that is intended as a whitelist for curators using the ontology. Such a subset will exclude classes that curators should not use for curation.</obo:IAO_0000115>
<rdfs:label xml:lang="en">curation subset ontology module</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_8000008 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_8000008">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_8000006"/>
<obo:IAO_0000111 xml:lang="en">analysis ontology module</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">An ontology module that is intended for usage in analysis or discovery applications.</obo:IAO_0000115>
<rdfs:label xml:lang="en">analysis subset ontology module</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_8000009 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_8000009">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_8000006"/>
<obo:IAO_0000111 xml:lang="en">single layer ontology module</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">A subset ontology that is largely comprised of a single layer or strata in an ontology class hierarchy. The purpose is typically for rolling up for visualization. The classes in the layer need not be disjoint.</obo:IAO_0000115>
<obo:IAO_0000118 xml:lang="en">ribbon subset</obo:IAO_0000118>
<rdfs:label xml:lang="en">single layer subset ontology module</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_8000010 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_8000010">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_8000006"/>
<obo:IAO_0000111 xml:lang="en">exclusion subset ontology module</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">A subset of an ontology that is intended to be excluded for some purpose. For example, a blacklist of classes.</obo:IAO_0000115>
<obo:IAO_0000118 xml:lang="en">antislim</obo:IAO_0000118>
<rdfs:label xml:lang="en">exclusion subset ontology module</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_8000011 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_8000011">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_8000005"/>
<obo:IAO_0000111 xml:lang="en">external import ontology module</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">An imported ontology module that is derived from an external ontology. Derivation methods include the OWLAPI SLME approach.</obo:IAO_0000115>
<obo:IAO_0000118 xml:lang="en">external import</obo:IAO_0000118>
<rdfs:label xml:lang="en">external import ontology module</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_8000012 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_8000012">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_8000006"/>
<obo:IAO_0000111 xml:lang="en">species subset ontology module</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">A subset ontology that is crafted to either include or exclude a taxonomic grouping of species.</obo:IAO_0000115>
<obo:IAO_0000118 xml:lang="en">taxon subset</obo:IAO_0000118>
<rdfs:label xml:lang="en">species subset ontology module</rdfs:label>
<rdfs:seeAlso rdf:resource="https://github.com/obophenotype/uberon/wiki/Taxon-constraints"/>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_8000013 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_8000013">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_8000000"/>
<obo:IAO_0000111 xml:lang="en">reasoned ontology module</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">An ontology module that contains axioms generated by a reasoner. The generated axioms are typically direct SubClassOf axioms, but other possibilities are available.</obo:IAO_0000115>
<rdfs:label xml:lang="en">reasoned ontology module</rdfs:label>
<rdfs:seeAlso rdf:resource="http://robot.obolibrary.org/reason"/>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_8000014 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_8000014">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_8000000"/>
<obo:IAO_0000111 xml:lang="en">generated ontology module</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">An ontology module that is automatically generated, for example via a SPARQL query or via template and a CSV.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">TODO: Add axioms (using PROV-O?) that indicate this is the output-of some reasoning process</obo:IAO_0000116>
<rdfs:label xml:lang="en">generated ontology module</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_8000015 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_8000015">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_8000014"/>
<obo:IAO_0000111 xml:lang="en">template generated ontology module</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">An ontology module that is automatically generated from a template specification and fillers for slots in that template.</obo:IAO_0000115>
<rdfs:label xml:lang="en">template generated ontology module</rdfs:label>
<rdfs:seeAlso rdf:resource="http://robot.obolibrary.org/template"/>
<rdfs:seeAlso rdf:resource="https://doi.org/10.1186/s13326-017-0126-0"/>
<rdfs:seeAlso rdf:resource="https://github.com/dosumis/dead_simple_owl_design_patterns/"/>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_8000016 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_8000016">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_8000004"/>
<obo:IAO_0000111 xml:lang="en">taxonomic bridge ontology module</obo:IAO_0000111>
<rdfs:label xml:lang="en">taxonomic bridge ontology module</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_8000017 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_8000017">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_8000006"/>
<obo:IAO_0000111 xml:lang="en">ontology module subsetted by expressivity</obo:IAO_0000111>
<rdfs:label xml:lang="en">ontology module subsetted by expressivity</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_8000018 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_8000018">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_8000017"/>
<obo:IAO_0000111 xml:lang="en">obo basic subset ontology module</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">A subset ontology that is designed for basic applications to continue to make certain simplifying assumptions; many of these simplifying assumptions were based on the initial version of the Gene Ontology, and have become enshrined in many popular and useful tools such as term enrichment tools.
Examples of such assumptions include: traversing the ontology graph ignoring relationship types using a naive algorithm will not lead to cycles (i.e. the ontology is a DAG); every referenced term is declared in the ontology (i.e. there are no dangling clauses).
An ontology is OBO Basic if and only if it has the following characteristics:
DAG
Unidirectional
No Dangling Clauses
Fully Asserted
Fully Labeled
No equivalence axioms
Singly labeled edges
No qualifier lists
No disjointness axioms
No owl-axioms header
No imports</obo:IAO_0000115>
<rdfs:label xml:lang="en">obo basic subset ontology module</rdfs:label>
<rdfs:seeAlso rdf:resource="http://owlcollab.github.io/oboformat/doc/obo-syntax.html#6.2"/>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_8000019 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_8000019">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_8000017"/>
<obo:IAO_0000111 xml:lang="en">ontology module subsetted by OWL profile</obo:IAO_0000111>
<rdfs:label xml:lang="en">ontology module subsetted by OWL profile</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_8000020 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_8000020">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_8000019"/>
<obo:IAO_0000111 xml:lang="en">EL++ ontology module</obo:IAO_0000111>
<rdfs:label xml:lang="en">EL++ ontology module</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/NCBITaxon_10239 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_10239">
<ncbitaxon:has_rank rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_superkingdom"/>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GC_ID:1</oboInOwl:hasDbXref>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ncbi_taxonomy</oboInOwl:hasOBONamespace>
<oboInOwl:hasRelatedSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Vira</oboInOwl:hasRelatedSynonym>
<oboInOwl:hasRelatedSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Viridae</oboInOwl:hasRelatedSynonym>
<oboInOwl:hasRelatedSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">viruses</oboInOwl:hasRelatedSynonym>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon.owl"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Viruses</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_10239"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Vira</owl:annotatedTarget>
<oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon#synonym"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_10239"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Viridae</owl:annotatedTarget>
<oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon#synonym"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_10239"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">viruses</owl:annotatedTarget>
<oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon#blast_name"/>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/NCBITaxon_117570 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_117570">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_7776"/>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GC_ID:1</oboInOwl:hasDbXref>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ncbi_taxonomy</oboInOwl:hasOBONamespace>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon.owl"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Teleostomi</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/NCBITaxon_117571 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_117571">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_117570"/>
<oboInOwl:hasAlternativeId rdf:datatype="http://www.w3.org/2001/XMLSchema#string">NCBITaxon:40673</oboInOwl:hasAlternativeId>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GC_ID:1</oboInOwl:hasDbXref>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">bony vertebrates</oboInOwl:hasExactSynonym>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ncbi_taxonomy</oboInOwl:hasOBONamespace>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon.owl"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Euteleostomi</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_117571"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">bony vertebrates</owl:annotatedTarget>
<oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon#genbank_common_name"/>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/NCBITaxon_131221 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_131221">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_35493"/>
<ncbitaxon:has_rank rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_subphylum"/>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GC_ID:1</oboInOwl:hasDbXref>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">charophyte/embryophyte group</oboInOwl:hasExactSynonym>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ncbi_taxonomy</oboInOwl:hasOBONamespace>
<oboInOwl:hasRelatedSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Charophyta/Embryophyta group</oboInOwl:hasRelatedSynonym>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon.owl"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Streptophytina</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_131221"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">charophyte/embryophyte group</owl:annotatedTarget>
<oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon#equivalent_name"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_131221"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Charophyta/Embryophyta group</owl:annotatedTarget>
<oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon#synonym"/>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/NCBITaxon_131567 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_131567">
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GC_ID:1</oboInOwl:hasDbXref>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ncbi_taxonomy</oboInOwl:hasOBONamespace>
<oboInOwl:hasRelatedSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">biota</oboInOwl:hasRelatedSynonym>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon.owl"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">cellular organisms</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_131567"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">biota</owl:annotatedTarget>
<oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon#synonym"/>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/NCBITaxon_1338369 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_1338369">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_8287"/>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GC_ID:1</oboInOwl:hasDbXref>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ncbi_taxonomy</oboInOwl:hasOBONamespace>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon.owl"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Dipnotetrapodomorpha</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/NCBITaxon_1437010 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_1437010">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_9347"/>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GC_ID:1</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PMID:11743200</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PMID:11791233</oboInOwl:hasDbXref>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ncbi_taxonomy</oboInOwl:hasOBONamespace>
<oboInOwl:hasRelatedSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Boreotheria</oboInOwl:hasRelatedSynonym>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon.owl"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Boreoeutheria</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_1437010"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Boreotheria</owl:annotatedTarget>
<oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon#synonym"/>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/NCBITaxon_1437180 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_1437180">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_58024"/>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GC_ID:1</oboInOwl:hasDbXref>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ncbi_taxonomy</oboInOwl:hasOBONamespace>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon.owl"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Acrogymnospermae</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/NCBITaxon_2 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_2">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_131567"/>
<ncbitaxon:has_rank rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_superkingdom"/>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GC_ID:11</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PMID:10425795</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PMID:10425796</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PMID:10425797</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PMID:10490293</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PMID:10843050</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PMID:10939651</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PMID:10939673</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PMID:10939677</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PMID:11211268</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PMID:11321083</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PMID:11321113</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PMID:11411719</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PMID:11540071</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PMID:11542017</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PMID:11542087</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PMID:11760965</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PMID:12054223</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PMID:2112744</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PMID:270744</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PMID:7520741</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PMID:8123559</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PMID:8186100</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PMID:8590690</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PMID:9103655</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PMID:9336922</oboInOwl:hasDbXref>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">eubacteria</oboInOwl:hasExactSynonym>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ncbi_taxonomy</oboInOwl:hasOBONamespace>
<oboInOwl:hasRelatedSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Monera</oboInOwl:hasRelatedSynonym>
<oboInOwl:hasRelatedSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Procaryotae</oboInOwl:hasRelatedSynonym>
<oboInOwl:hasRelatedSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Prokaryota</oboInOwl:hasRelatedSynonym>
<oboInOwl:hasRelatedSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Prokaryotae</oboInOwl:hasRelatedSynonym>
<oboInOwl:hasRelatedSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">bacteria</oboInOwl:hasRelatedSynonym>
<oboInOwl:hasRelatedSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">prokaryote</oboInOwl:hasRelatedSynonym>
<oboInOwl:hasRelatedSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">prokaryotes</oboInOwl:hasRelatedSynonym>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon.owl"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Bacteria</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_2"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">eubacteria</owl:annotatedTarget>
<oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon#genbank_common_name"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_2"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Monera</owl:annotatedTarget>
<oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon#in_part"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_2"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Procaryotae</owl:annotatedTarget>
<oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon#in_part"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_2"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Prokaryota</owl:annotatedTarget>
<oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon#in_part"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_2"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Prokaryotae</owl:annotatedTarget>
<oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon#in_part"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_2"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">bacteria</owl:annotatedTarget>
<oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon#blast_name"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_2"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">prokaryote</owl:annotatedTarget>
<oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon#in_part"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_2"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">prokaryotes</owl:annotatedTarget>
<oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon#in_part"/>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/NCBITaxon_207598 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_207598">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_9604"/>
<ncbitaxon:has_rank rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_subfamily"/>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GC_ID:1</oboInOwl:hasDbXref>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ncbi_taxonomy</oboInOwl:hasOBONamespace>
<oboInOwl:hasRelatedSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Homo/Pan/Gorilla group</oboInOwl:hasRelatedSynonym>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon.owl"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Homininae</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_207598"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Homo/Pan/Gorilla group</owl:annotatedTarget>
<oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon#synonym"/>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/NCBITaxon_2157 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_2157">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_131567"/>
<ncbitaxon:has_rank rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_superkingdom"/>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GC_ID:11</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PMID:10425795</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PMID:10425796</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PMID:10425797</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PMID:10490293</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PMID:10843050</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PMID:10939651</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PMID:10939673</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PMID:10939677</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PMID:11211268</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PMID:11321083</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PMID:11321113</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PMID:11411719</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PMID:11540071</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PMID:11541975</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PMID:11542064</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PMID:11542149</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PMID:11760965</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PMID:12054223</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PMID:2112744</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PMID:25527841</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PMID:270744</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PMID:8123559</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PMID:8590690</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PMID:9103655</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PMID:9336922</oboInOwl:hasDbXref>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ncbi_taxonomy</oboInOwl:hasOBONamespace>
<oboInOwl:hasRelatedSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Archaebacteria</oboInOwl:hasRelatedSynonym>
<oboInOwl:hasRelatedSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Mendosicutes</oboInOwl:hasRelatedSynonym>
<oboInOwl:hasRelatedSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Metabacteria</oboInOwl:hasRelatedSynonym>
<oboInOwl:hasRelatedSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Monera</oboInOwl:hasRelatedSynonym>
<oboInOwl:hasRelatedSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Procaryotae</oboInOwl:hasRelatedSynonym>
<oboInOwl:hasRelatedSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Prokaryota</oboInOwl:hasRelatedSynonym>
<oboInOwl:hasRelatedSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Prokaryotae</oboInOwl:hasRelatedSynonym>
<oboInOwl:hasRelatedSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">archaea</oboInOwl:hasRelatedSynonym>
<oboInOwl:hasRelatedSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">prokaryote</oboInOwl:hasRelatedSynonym>
<oboInOwl:hasRelatedSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">prokaryotes</oboInOwl:hasRelatedSynonym>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon.owl"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Archaea</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_2157"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Archaebacteria</owl:annotatedTarget>
<oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon#synonym"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_2157"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Mendosicutes</owl:annotatedTarget>
<oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon#synonym"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_2157"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Metabacteria</owl:annotatedTarget>
<oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon#synonym"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_2157"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Monera</owl:annotatedTarget>
<oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon#in_part"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_2157"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Procaryotae</owl:annotatedTarget>
<oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon#in_part"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_2157"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Prokaryota</owl:annotatedTarget>
<oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon#in_part"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_2157"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Prokaryotae</owl:annotatedTarget>
<oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon#in_part"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_2157"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">archaea</owl:annotatedTarget>
<oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon#blast_name"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_2157"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">prokaryote</owl:annotatedTarget>
<oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon#in_part"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_2157"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">prokaryotes</owl:annotatedTarget>
<oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon#in_part"/>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/NCBITaxon_2759 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_2759">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_131567"/>
<ncbitaxon:has_rank rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_superkingdom"/>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GC_ID:1</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PMID:23020233</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PMID:30257078</oboInOwl:hasDbXref>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">eucaryotes</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">eukaryotes</oboInOwl:hasExactSynonym>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ncbi_taxonomy</oboInOwl:hasOBONamespace>
<oboInOwl:hasRelatedSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Eucarya</oboInOwl:hasRelatedSynonym>
<oboInOwl:hasRelatedSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Eucaryotae</oboInOwl:hasRelatedSynonym>
<oboInOwl:hasRelatedSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Eukarya</oboInOwl:hasRelatedSynonym>
<oboInOwl:hasRelatedSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Eukaryotae</oboInOwl:hasRelatedSynonym>
<oboInOwl:hasRelatedSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">eukaryotes</oboInOwl:hasRelatedSynonym>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon.owl"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Eukaryota</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_2759"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">eucaryotes</owl:annotatedTarget>
<oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon#genbank_common_name"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_2759"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">eukaryotes</owl:annotatedTarget>
<oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon#common_name"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_2759"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Eucarya</owl:annotatedTarget>
<oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon#synonym"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_2759"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Eucaryotae</owl:annotatedTarget>
<oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon#synonym"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_2759"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Eukarya</owl:annotatedTarget>
<oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon#synonym"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_2759"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Eukaryotae</owl:annotatedTarget>
<oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon#synonym"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_2759"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">eukaryotes</owl:annotatedTarget>
<oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon#blast_name"/>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/NCBITaxon_3041 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_3041">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_33090"/>
<ncbitaxon:has_rank rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_phylum"/>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GC_ID:1</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PMID:23020233</oboInOwl:hasDbXref>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">green algae</oboInOwl:hasExactSynonym>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ncbi_taxonomy</oboInOwl:hasOBONamespace>
<oboInOwl:hasRelatedSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Chlorophycota</oboInOwl:hasRelatedSynonym>
<oboInOwl:hasRelatedSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Chlorophyta sensu Bremer 1985</oboInOwl:hasRelatedSynonym>
<oboInOwl:hasRelatedSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">algae</oboInOwl:hasRelatedSynonym>
<oboInOwl:hasRelatedSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">green algae</oboInOwl:hasRelatedSynonym>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon.owl"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Chlorophyta</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_3041"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">green algae</owl:annotatedTarget>
<oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon#genbank_common_name"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_3041"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Chlorophycota</owl:annotatedTarget>
<oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon#synonym"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_3041"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Chlorophyta sensu Bremer 1985</owl:annotatedTarget>
<oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon#synonym"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_3041"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">algae</owl:annotatedTarget>
<oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon#in_part"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_3041"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">green algae</owl:annotatedTarget>
<oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon#blast_name"/>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/NCBITaxon_314146 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_314146">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_1437010"/>
<ncbitaxon:has_rank rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_superorder"/>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GC_ID:1</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PMID:11214319</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PMID:12082125</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PMID:12878460</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PMID:15522813</oboInOwl:hasDbXref>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ncbi_taxonomy</oboInOwl:hasOBONamespace>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon.owl"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Euarchontoglires</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/NCBITaxon_314293 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_314293">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_376913"/>
<ncbitaxon:has_rank rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_infraorder"/>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GC_ID:1</oboInOwl:hasDbXref>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ncbi_taxonomy</oboInOwl:hasOBONamespace>
<oboInOwl:hasRelatedSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Anthropoidea</oboInOwl:hasRelatedSynonym>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon.owl"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Simiiformes</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_314293"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Anthropoidea</owl:annotatedTarget>
<oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon#synonym"/>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/NCBITaxon_314295 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_314295">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_9526"/>
<ncbitaxon:has_rank rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_superfamily"/>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GC_ID:1</oboInOwl:hasDbXref>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ape</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">apes</oboInOwl:hasExactSynonym>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ncbi_taxonomy</oboInOwl:hasOBONamespace>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon.owl"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Hominoidea</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_314295"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ape</owl:annotatedTarget>
<oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon#common_name"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_314295"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">apes</owl:annotatedTarget>
<oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon#genbank_common_name"/>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/NCBITaxon_3193 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_3193">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_131221"/>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GC_ID:1</oboInOwl:hasDbXref>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">higher plants</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">land plants</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">plants</oboInOwl:hasExactSynonym>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ncbi_taxonomy</oboInOwl:hasOBONamespace>
<oboInOwl:hasRelatedSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">land plants</oboInOwl:hasRelatedSynonym>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon.owl"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Embryophyta</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_3193"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">higher plants</owl:annotatedTarget>
<oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon#common_name"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_3193"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">land plants</owl:annotatedTarget>
<oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon#common_name"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_3193"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">plants</owl:annotatedTarget>
<oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon#common_name"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_3193"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">land plants</owl:annotatedTarget>
<oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon#blast_name"/>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/NCBITaxon_32523 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_32523">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_1338369"/>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GC_ID:1</oboInOwl:hasDbXref>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">tetrapods</oboInOwl:hasExactSynonym>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ncbi_taxonomy</oboInOwl:hasOBONamespace>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon.owl"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Tetrapoda</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_32523"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">tetrapods</owl:annotatedTarget>
<oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon#genbank_common_name"/>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/NCBITaxon_32524 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_32524">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_32523"/>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GC_ID:1</oboInOwl:hasDbXref>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">amniotes</oboInOwl:hasExactSynonym>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ncbi_taxonomy</oboInOwl:hasOBONamespace>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon.owl"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Amniota</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_32524"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">amniotes</owl:annotatedTarget>
<oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon#genbank_common_name"/>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/NCBITaxon_32525 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_32525">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_40674"/>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GC_ID:1</oboInOwl:hasDbXref>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Theria</oboInOwl:hasExactSynonym>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ncbi_taxonomy</oboInOwl:hasOBONamespace>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon.owl"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Theria <mammals></rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_32525"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Theria</owl:annotatedTarget>
<oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon#scientific_name"/>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/NCBITaxon_33090 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_33090">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_2759"/>
<ncbitaxon:has_rank rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_kingdom"/>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GC_ID:1</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PMID:16248873</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PMID:30257078</oboInOwl:hasDbXref>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Chlorophyta/Embryophyta group</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">chlorophyte/embryophyte group</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">green plants</oboInOwl:hasExactSynonym>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ncbi_taxonomy</oboInOwl:hasOBONamespace>
<oboInOwl:hasRelatedSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Chlorobionta</oboInOwl:hasRelatedSynonym>
<oboInOwl:hasRelatedSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Chloroplastida</oboInOwl:hasRelatedSynonym>
<oboInOwl:hasRelatedSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">green plants</oboInOwl:hasRelatedSynonym>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon.owl"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Viridiplantae</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_33090"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Chlorophyta/Embryophyta group</owl:annotatedTarget>
<oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon#equivalent_name"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_33090"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">chlorophyte/embryophyte group</owl:annotatedTarget>
<oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon#equivalent_name"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_33090"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">green plants</owl:annotatedTarget>
<oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon#common_name"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_33090"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Chlorobionta</owl:annotatedTarget>
<oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon#synonym"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_33090"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Chloroplastida</owl:annotatedTarget>
<oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon#synonym"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_33090"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">green plants</owl:annotatedTarget>
<oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon#blast_name"/>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/NCBITaxon_33154 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_33154">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_2759"/>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GC_ID:1</oboInOwl:hasDbXref>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ncbi_taxonomy</oboInOwl:hasOBONamespace>
<oboInOwl:hasRelatedSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Fungi/Metazoa group</oboInOwl:hasRelatedSynonym>
<oboInOwl:hasRelatedSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">opisthokonts</oboInOwl:hasRelatedSynonym>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon.owl"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Opisthokonta</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_33154"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Fungi/Metazoa group</owl:annotatedTarget>
<oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon#synonym"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_33154"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">opisthokonts</owl:annotatedTarget>
<oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon#synonym"/>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/NCBITaxon_33208 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_33208">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_33154"/>
<ncbitaxon:has_rank rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_kingdom"/>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GC_ID:1</oboInOwl:hasDbXref>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">metazoans</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">multicellular animals</oboInOwl:hasExactSynonym>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ncbi_taxonomy</oboInOwl:hasOBONamespace>
<oboInOwl:hasRelatedSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Animalia</oboInOwl:hasRelatedSynonym>
<oboInOwl:hasRelatedSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">animals</oboInOwl:hasRelatedSynonym>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon.owl"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Metazoa</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_33208"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">metazoans</owl:annotatedTarget>
<oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon#genbank_common_name"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_33208"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">multicellular animals</owl:annotatedTarget>
<oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon#common_name"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_33208"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Animalia</owl:annotatedTarget>
<oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon#synonym"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_33208"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">animals</owl:annotatedTarget>
<oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon#blast_name"/>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/NCBITaxon_33213 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_33213">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_6072"/>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GC_ID:1</oboInOwl:hasDbXref>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ncbi_taxonomy</oboInOwl:hasOBONamespace>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon.owl"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Bilateria</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/NCBITaxon_33511 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_33511">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_33213"/>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GC_ID:1</oboInOwl:hasDbXref>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">deuterostomes</oboInOwl:hasExactSynonym>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ncbi_taxonomy</oboInOwl:hasOBONamespace>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon.owl"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Deuterostomia</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_33511"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">deuterostomes</owl:annotatedTarget>
<oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon#common_name"/>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/NCBITaxon_3398 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_3398">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_58024"/>
<ncbitaxon:has_rank rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_class"/>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GC_ID:1</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PMID:25249442</oboInOwl:hasDbXref>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">angiosperms</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">flowering plants</oboInOwl:hasExactSynonym>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ncbi_taxonomy</oboInOwl:hasOBONamespace>
<oboInOwl:hasRelatedSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Angiospermae</oboInOwl:hasRelatedSynonym>
<oboInOwl:hasRelatedSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Magnoliophyta</oboInOwl:hasRelatedSynonym>
<oboInOwl:hasRelatedSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">flowering plants</oboInOwl:hasRelatedSynonym>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon.owl"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Magnoliopsida</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_3398"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">angiosperms</owl:annotatedTarget>
<oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon#common_name"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_3398"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">flowering plants</owl:annotatedTarget>
<oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon#genbank_common_name"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_3398"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Angiospermae</owl:annotatedTarget>
<oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon#synonym"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_3398"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Magnoliophyta</owl:annotatedTarget>
<oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon#synonym"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_3398"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">flowering plants</owl:annotatedTarget>
<oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon#blast_name"/>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/NCBITaxon_35493 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_35493">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_33090"/>
<ncbitaxon:has_rank rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_phylum"/>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GC_ID:1</oboInOwl:hasDbXref>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ncbi_taxonomy</oboInOwl:hasOBONamespace>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon.owl"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Streptophyta</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/NCBITaxon_376913 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_376913">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_9443"/>
<ncbitaxon:has_rank rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_suborder"/>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GC_ID:1</oboInOwl:hasDbXref>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ncbi_taxonomy</oboInOwl:hasOBONamespace>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon.owl"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Haplorrhini</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/NCBITaxon_40674 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_40674">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_32524"/>
<ncbitaxon:has_rank rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_class"/>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GC_ID:1</oboInOwl:hasDbXref>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">mammals</oboInOwl:hasExactSynonym>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ncbi_taxonomy</oboInOwl:hasOBONamespace>
<oboInOwl:hasRelatedSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">mammals</oboInOwl:hasRelatedSynonym>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon.owl"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Mammalia</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_40674"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">mammals</owl:annotatedTarget>
<oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon#genbank_common_name"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_40674"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">mammals</owl:annotatedTarget>
<oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon#blast_name"/>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/NCBITaxon_4751 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_4751">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_33154"/>
<ncbitaxon:has_rank rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_kingdom"/>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GC_ID:1</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PMID:11062127</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PMID:12684019</oboInOwl:hasDbXref>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ncbi_taxonomy</oboInOwl:hasOBONamespace>
<oboInOwl:hasRelatedSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Mycota</oboInOwl:hasRelatedSynonym>
<oboInOwl:hasRelatedSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">fungi</oboInOwl:hasRelatedSynonym>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon.owl"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Fungi</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_4751"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Mycota</owl:annotatedTarget>
<oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon#genbank_synonym"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_4751"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">fungi</owl:annotatedTarget>
<oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon#blast_name"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_4751"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">fungi</owl:annotatedTarget>
<oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon#in_part"/>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/NCBITaxon_58023 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_58023">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_3193"/>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GC_ID:1</oboInOwl:hasDbXref>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">vascular plants</oboInOwl:hasExactSynonym>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ncbi_taxonomy</oboInOwl:hasOBONamespace>
<oboInOwl:hasRelatedSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">vascular plants</oboInOwl:hasRelatedSynonym>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon.owl"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Tracheophyta</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_58023"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">vascular plants</owl:annotatedTarget>
<oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon#common_name"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_58023"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">vascular plants</owl:annotatedTarget>
<oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon#blast_name"/>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/NCBITaxon_58024 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_58024">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_78536"/>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GC_ID:1</oboInOwl:hasDbXref>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">seed plants</oboInOwl:hasExactSynonym>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ncbi_taxonomy</oboInOwl:hasOBONamespace>
<oboInOwl:hasRelatedSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">seed plants</oboInOwl:hasRelatedSynonym>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon.owl"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Spermatophyta</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_58024"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">seed plants</owl:annotatedTarget>
<oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon#common_name"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_58024"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">seed plants</owl:annotatedTarget>
<oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon#blast_name"/>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/NCBITaxon_6072 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_6072">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_33208"/>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GC_ID:1</oboInOwl:hasDbXref>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ncbi_taxonomy</oboInOwl:hasOBONamespace>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon.owl"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Eumetazoa</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/NCBITaxon_7711 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_7711">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_33511"/>
<ncbitaxon:has_rank rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_phylum"/>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GC_ID:1</oboInOwl:hasDbXref>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">chordates</oboInOwl:hasExactSynonym>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ncbi_taxonomy</oboInOwl:hasOBONamespace>
<oboInOwl:hasRelatedSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">chordates</oboInOwl:hasRelatedSynonym>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon.owl"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Chordata</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_7711"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">chordates</owl:annotatedTarget>
<oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon#genbank_common_name"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_7711"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">chordates</owl:annotatedTarget>
<oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon#blast_name"/>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/NCBITaxon_7742 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_7742">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_89593"/>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GC_ID:1</oboInOwl:hasDbXref>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Vertebrata</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">vertebrates</oboInOwl:hasExactSynonym>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ncbi_taxonomy</oboInOwl:hasOBONamespace>
<oboInOwl:hasRelatedSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">vertebrates</oboInOwl:hasRelatedSynonym>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon.owl"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Vertebrata <vertebrates></rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_7742"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Vertebrata</owl:annotatedTarget>
<oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon#scientific_name"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_7742"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">vertebrates</owl:annotatedTarget>
<oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon#genbank_common_name"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_7742"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">vertebrates</owl:annotatedTarget>
<oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon#blast_name"/>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/NCBITaxon_7776 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_7776">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_7742"/>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GC_ID:1</oboInOwl:hasDbXref>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Gnathostomata</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">jawed vertebrates</oboInOwl:hasExactSynonym>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ncbi_taxonomy</oboInOwl:hasOBONamespace>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon.owl"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Gnathostomata <vertebrates></rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_7776"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Gnathostomata</owl:annotatedTarget>
<oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon#scientific_name"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_7776"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">jawed vertebrates</owl:annotatedTarget>
<oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon#genbank_common_name"/>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/NCBITaxon_78536 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_78536">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_58023"/>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GC_ID:1</oboInOwl:hasDbXref>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">euphyllophytes</oboInOwl:hasExactSynonym>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ncbi_taxonomy</oboInOwl:hasOBONamespace>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon.owl"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Euphyllophyta</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_78536"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">euphyllophytes</owl:annotatedTarget>
<oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon#equivalent_name"/>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/NCBITaxon_8287 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_8287">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_117571"/>
<ncbitaxon:has_rank rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_superclass"/>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GC_ID:1</oboInOwl:hasDbXref>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ncbi_taxonomy</oboInOwl:hasOBONamespace>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon.owl"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Sarcopterygii</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/NCBITaxon_89593 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_89593">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_7711"/>
<ncbitaxon:has_rank rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_subphylum"/>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GC_ID:1</oboInOwl:hasDbXref>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Craniata</oboInOwl:hasExactSynonym>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ncbi_taxonomy</oboInOwl:hasOBONamespace>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon.owl"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Craniata <chordates></rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_89593"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Craniata</owl:annotatedTarget>
<oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon#scientific_name"/>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/NCBITaxon_9347 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_9347">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_32525"/>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GC_ID:1</oboInOwl:hasDbXref>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">eutherian mammals</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">placental mammals</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">placentals</oboInOwl:hasExactSynonym>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ncbi_taxonomy</oboInOwl:hasOBONamespace>
<oboInOwl:hasRelatedSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Placentalia</oboInOwl:hasRelatedSynonym>
<oboInOwl:hasRelatedSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">placentals</oboInOwl:hasRelatedSynonym>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon.owl"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Eutheria</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_9347"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">eutherian mammals</owl:annotatedTarget>
<oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon#common_name"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_9347"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">placental mammals</owl:annotatedTarget>
<oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon#common_name"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_9347"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">placentals</owl:annotatedTarget>
<oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon#genbank_common_name"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_9347"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Placentalia</owl:annotatedTarget>
<oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon#synonym"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_9347"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">placentals</owl:annotatedTarget>
<oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon#blast_name"/>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/NCBITaxon_9443 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_9443">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_314146"/>
<ncbitaxon:has_rank rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_order"/>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GC_ID:1</oboInOwl:hasDbXref>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">primate</oboInOwl:hasExactSynonym>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ncbi_taxonomy</oboInOwl:hasOBONamespace>
<oboInOwl:hasRelatedSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Primata</oboInOwl:hasRelatedSynonym>
<oboInOwl:hasRelatedSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">primates</oboInOwl:hasRelatedSynonym>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon.owl"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Primates</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_9443"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">primate</owl:annotatedTarget>
<oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon#equivalent_name"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_9443"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Primata</owl:annotatedTarget>
<oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon#synonym"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_9443"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">primates</owl:annotatedTarget>
<oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon#blast_name"/>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/NCBITaxon_9526 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_9526">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_314293"/>
<ncbitaxon:has_rank rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_parvorder"/>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GC_ID:1</oboInOwl:hasDbXref>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ncbi_taxonomy</oboInOwl:hasOBONamespace>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon.owl"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Catarrhini</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/NCBITaxon_9604 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_9604">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_314295"/>
<ncbitaxon:has_rank rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_family"/>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GC_ID:1</oboInOwl:hasDbXref>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">great apes</oboInOwl:hasExactSynonym>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ncbi_taxonomy</oboInOwl:hasOBONamespace>
<oboInOwl:hasRelatedSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Pongidae</oboInOwl:hasRelatedSynonym>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon.owl"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Hominidae</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_9604"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">great apes</owl:annotatedTarget>
<oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon#genbank_common_name"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_9604"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Pongidae</owl:annotatedTarget>
<oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon#synonym"/>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/NCBITaxon_9605 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_9605">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_207598"/>
<ncbitaxon:has_rank rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_genus"/>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GC_ID:1</oboInOwl:hasDbXref>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">humans</oboInOwl:hasExactSynonym>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ncbi_taxonomy</oboInOwl:hasOBONamespace>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon.owl"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Homo</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_9605"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">humans</owl:annotatedTarget>
<oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon#common_name"/>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/NCBITaxon_9606 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_9606">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_9605"/>
<ncbitaxon:has_rank rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_species"/>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GC_ID:1</oboInOwl:hasDbXref>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">human</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">man</oboInOwl:hasExactSynonym>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ncbi_taxonomy</oboInOwl:hasOBONamespace>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon.owl"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Homo sapiens</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_9606"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">human</owl:annotatedTarget>
<oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon#genbank_common_name"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_9606"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">man</owl:annotatedTarget>
<oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon#common_name"/>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/PATO_0000001 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PATO_0000001">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000020"/>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A dependent entity that inheres in a bearer by virtue of how the bearer is related to other entities</obo:IAO_0000115>
<obo:IAO_0000589>quality (PATO)</obo:IAO_0000589>
<oboInOwl:hasAlternativeId rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PATO:0000072</oboInOwl:hasAlternativeId>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">quality</oboInOwl:hasOBONamespace>
<oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PATO:0000001</oboInOwl:id>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/pato.owl"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">quality</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/PATO_0000001"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A dependent entity that inheres in a bearer by virtue of how the bearer is related to other entities</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PATOC:GVG</oboInOwl:hasDbXref>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/PATO_0000068 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PATO_0000068">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PATO_0000001"/>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">quality</oboInOwl:hasOBONamespace>
<oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PATO:0000068</oboInOwl:id>
<rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">TODO: define this or obsolete it and move children somewhere else.</rdfs:comment>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/pato.owl"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">qualitative</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/PATO_0000069 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PATO_0000069">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PATO_0000068"/>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A quality inhering in a bearer by virtue of the whether the bearer differs from normal or average.</obo:IAO_0000115>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">quality</oboInOwl:hasOBONamespace>
<oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PATO:0000069</oboInOwl:id>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/pato#attribute_slim"/>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/pato.owl"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">deviation (from_normal)</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/PATO_0000069"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A quality inhering in a bearer by virtue of the whether the bearer differs from normal or average.</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PATOC:GVG</oboInOwl:hasDbXref>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/PATO_0000070 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PATO_0000070">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PATO_0000068"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/pato#reciprocal_of"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/PATO_0001555"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">The number of entities of this type that are part of the whole organism.</obo:IAO_0000115>
<oboInOwl:hasAlternativeId rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PATO:0000053</oboInOwl:hasAlternativeId>
<oboInOwl:hasAlternativeId rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PATO:0000071</oboInOwl:hasAlternativeId>
<oboInOwl:hasAlternativeId rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PATO:0001169</oboInOwl:hasAlternativeId>
<oboInOwl:hasAlternativeId rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PATO:0001226</oboInOwl:hasAlternativeId>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">presence or absence in organism</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">quantitative</oboInOwl:hasExactSynonym>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">quality</oboInOwl:hasOBONamespace>
<oboInOwl:hasRelatedSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">count in organism</oboInOwl:hasRelatedSynonym>
<oboInOwl:hasRelatedSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">number</oboInOwl:hasRelatedSynonym>
<oboInOwl:hasRelatedSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">presence</oboInOwl:hasRelatedSynonym>
<oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PATO:0000070</oboInOwl:id>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/pato#attribute_slim"/>
<rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">This term was originally named "presence". It has been renamed to reduce ambiguity. Consider annotating with the reciprocal relation,PATO:0001555, has_number_of. For example, rather than E=fin ray Q=count in organism C=10, say E=organism Q=has number of E2= fin ray C=10.</rdfs:comment>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/pato.owl"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">amount</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/PATO_0000070"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">The number of entities of this type that are part of the whole organism.</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PATOC:GVG</oboInOwl:hasDbXref>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/PATO_0000161 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PATO_0000161">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PATO_0002062"/>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A quality of a single process inhering in a bearer by virtue of the bearer's occurrence per unit time.</obo:IAO_0000115>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">quality</oboInOwl:hasOBONamespace>
<oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PATO:0000161</oboInOwl:id>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/pato#attribute_slim"/>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/pato#scalar_slim"/>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/pato.owl"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">rate</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/PATO_0000161"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A quality of a single process inhering in a bearer by virtue of the bearer's occurrence per unit time.</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PATOC:melissa</oboInOwl:hasDbXref>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/PATO_0000461 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PATO_0000461">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PATO_0000068"/>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A quality inhering in a bearer by virtue of the bearer's exhibiting no deviation from normal or average.</obo:IAO_0000115>
<obo:RO_0002604 rdf:resource="http://purl.obolibrary.org/obo/PATO_0000460"/>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">quality</oboInOwl:hasOBONamespace>
<oboInOwl:hasRelatedSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">average</oboInOwl:hasRelatedSynonym>
<oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PATO:0000461</oboInOwl:id>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/pato#abnormal_slim"/>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/pato#mpath_slim"/>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/pato#value_slim"/>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/pato.owl"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">normal</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/PATO_0000461"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A quality inhering in a bearer by virtue of the bearer's exhibiting no deviation from normal or average.</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PATOC:GVG</oboInOwl:hasDbXref>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/PATO_0000467 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PATO_0000467">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PATO_0000070"/>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A quality inhering in a bearer by virtue of the bearer's existence.</obo:IAO_0000115>
<obo:RO_0002604 rdf:resource="http://purl.obolibrary.org/obo/PATO_0000462"/>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">quality</oboInOwl:hasOBONamespace>
<oboInOwl:hasRelatedSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">present in organism</oboInOwl:hasRelatedSynonym>
<oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PATO:0000467</oboInOwl:id>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/pato#absent_slim"/>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/pato#value_slim"/>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/pato.owl"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">present</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/PATO_0000467"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A quality inhering in a bearer by virtue of the bearer's existence.</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PATOC:GVG</oboInOwl:hasDbXref>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/PATO_0000470 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PATO_0000470">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/PATO_0000070"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/pato#increased_in_magnitude_relative_to"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/PATO_0000461"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PATO_0000467"/>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PATO_0002300"/>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">An amount which is relatively high.</obo:IAO_0000115>
<obo:RO_0002604 rdf:resource="http://purl.obolibrary.org/obo/PATO_0001997"/>
<oboInOwl:hasAlternativeId rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PATO:0000420</oboInOwl:hasAlternativeId>
<oboInOwl:hasAlternativeId rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PATO:0000650</oboInOwl:hasAlternativeId>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">increased number</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">present in greater numbers in organism</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">supernumerary</oboInOwl:hasExactSynonym>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">quality</oboInOwl:hasOBONamespace>
<oboInOwl:hasRelatedSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">accessory</oboInOwl:hasRelatedSynonym>
<oboInOwl:hasRelatedSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">increased</oboInOwl:hasRelatedSynonym>
<oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PATO:0000470</oboInOwl:id>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/pato#value_slim"/>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/pato.owl"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">increased amount</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/PATO_0000470"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">An amount which is relatively high.</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PATOC:GVG</oboInOwl:hasDbXref>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/PATO_0000911 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PATO_0000911">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/PATO_0000161"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/pato#decreased_in_magnitude_relative_to"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/PATO_0000461"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PATO_0000161"/>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PATO_0002302"/>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A rate which is relatively low.</obo:IAO_0000115>
<obo:RO_0002604 rdf:resource="http://purl.obolibrary.org/obo/PATO_0000912"/>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">slow rate</oboInOwl:hasExactSynonym>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">quality</oboInOwl:hasOBONamespace>
<oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PATO:0000911</oboInOwl:id>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/pato#mpath_slim"/>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/pato#value_slim"/>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/pato.owl"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">decreased rate</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/PATO_0000911"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A rate which is relatively low.</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PATO:GVG</oboInOwl:hasDbXref>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/PATO_0000912 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PATO_0000912">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/PATO_0000161"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/pato#increased_in_magnitude_relative_to"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/PATO_0000461"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PATO_0000161"/>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PATO_0002304"/>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A rate which is relatively high.</obo:IAO_0000115>
<obo:RO_0002604 rdf:resource="http://purl.obolibrary.org/obo/PATO_0000911"/>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">fast rate</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">high rate</oboInOwl:hasExactSynonym>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">quality</oboInOwl:hasOBONamespace>
<oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PATO:0000912</oboInOwl:id>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/pato#mpath_slim"/>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/pato#value_slim"/>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/pato.owl"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">increased rate</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/PATO_0000912"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A rate which is relatively high.</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PATO:GVG</oboInOwl:hasDbXref>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/PATO_0001018 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PATO_0001018">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PATO_0001241"/>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A quality of a physical entity that exists through action of continuants at the physical level of organisation in relation to other entities.</obo:IAO_0000115>
<oboInOwl:hasAlternativeId rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PATO:0002079</oboInOwl:hasAlternativeId>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Wikipedia:Physical_property</oboInOwl:hasDbXref>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">relational physical quality</oboInOwl:hasExactSynonym>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">quality</oboInOwl:hasOBONamespace>
<oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PATO:0001018</oboInOwl:id>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/pato#attribute_slim"/>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/pato.owl"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">physical quality</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/PATO_0001018"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A quality of a physical entity that exists through action of continuants at the physical level of organisation in relation to other entities.</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PATOC:GVG</oboInOwl:hasDbXref>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/PATO_0001019 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PATO_0001019">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PATO_0001018"/>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A physical quality which inheres in a bearer by virtue of some influence is exerted by the bearer's mass per unit size.</obo:IAO_0000115>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">quality</oboInOwl:hasOBONamespace>
<oboInOwl:hasRelatedSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">density</oboInOwl:hasRelatedSynonym>
<oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PATO:0001019</oboInOwl:id>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/pato#attribute_slim"/>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/pato#scalar_slim"/>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/pato.owl"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">mass density</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/PATO_0001019"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A physical quality which inheres in a bearer by virtue of some influence is exerted by the bearer's mass per unit size.</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">WordNet:WordNet</oboInOwl:hasDbXref>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/PATO_0001164 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PATO_0001164">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PATO_0001019"/>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A physical quality which inheres in a bearer by virtue of the bearer's exhibiting density.</obo:IAO_0000115>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">quality</oboInOwl:hasOBONamespace>
<oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PATO:0001164</oboInOwl:id>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/pato#mpath_slim"/>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/pato#value_slim"/>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/pato.owl"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">dense</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/PATO_0001164"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A physical quality which inheres in a bearer by virtue of the bearer's exhibiting density.</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PATOC:GVG</oboInOwl:hasDbXref>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/PATO_0001236 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PATO_0001236">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PATO_0000001"/>
<owl:disjointWith rdf:resource="http://purl.obolibrary.org/obo/PATO_0001241"/>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A quality which inheres in an process.</obo:IAO_0000115>
<oboInOwl:hasAlternativeId rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PATO:0001239</oboInOwl:hasAlternativeId>
<oboInOwl:hasAlternativeId rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PATO:0001240</oboInOwl:hasAlternativeId>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">quality of a process</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">quality of occurrent</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">quality of process</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">relational quality of occurrent</oboInOwl:hasExactSynonym>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">quality</oboInOwl:hasOBONamespace>
<oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PATO:0001236</oboInOwl:id>
<rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">See comments of relational quality of a physical entity.</rdfs:comment>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/pato.owl"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">process quality</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/PATO_0001236"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A quality which inheres in an process.</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PATOC:GVG</oboInOwl:hasDbXref>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/PATO_0001241 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PATO_0001241">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PATO_0000001"/>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A quality which inheres in a continuant.</obo:IAO_0000115>
<oboInOwl:hasAlternativeId rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PATO:0001237</oboInOwl:hasAlternativeId>
<oboInOwl:hasAlternativeId rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PATO:0001238</oboInOwl:hasAlternativeId>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">snap:Quality</oboInOwl:hasDbXref>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">monadic quality of a continuant</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">multiply inhering quality of a physical entity</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">quality of a continuant</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">quality of a single physical entity</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">quality of an object</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">quality of continuant</oboInOwl:hasExactSynonym>
<oboInOwl:hasNarrowSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">monadic quality of an object</oboInOwl:hasNarrowSynonym>
<oboInOwl:hasNarrowSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">monadic quality of continuant</oboInOwl:hasNarrowSynonym>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">quality</oboInOwl:hasOBONamespace>
<oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PATO:0001241</oboInOwl:id>
<rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Relational qualities are qualities that hold between multiple entities. Normal (monadic) qualities such as the shape of a eyeball exist purely as a quality of that eyeball. A relational quality such as sensitivity to light is a quality of that eyeball (and connecting nervous system) as it relates to incoming light waves/particles.</rdfs:comment>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/pato.owl"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">physical object quality</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/PATO_0001241"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A quality which inheres in a continuant.</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PATOC:GVG</oboInOwl:hasDbXref>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/PATO_0001338 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PATO_0001338">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PATO_0002003"/>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A biological sex quality inhering in a population of multiple sexes.</obo:IAO_0000115>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">quality</oboInOwl:hasOBONamespace>
<oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PATO:0001338</oboInOwl:id>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/pato#value_slim"/>
<rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">For example a mixture of females and male or males and hermaphrodites.</rdfs:comment>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/pato.owl"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">mixed sex</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/PATO_0001338"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A biological sex quality inhering in a population of multiple sexes.</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MGED:MGED</oboInOwl:hasDbXref>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/PATO_0001415 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PATO_0001415">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PATO_0002003"/>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A quality inhering in a population by virtue of the proportion of its members that are ill at a given time.</obo:IAO_0000115>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">quality</oboInOwl:hasOBONamespace>
<oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PATO:0001415</oboInOwl:id>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/pato#attribute_slim"/>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/pato#scalar_slim"/>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/pato.owl"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">morbidity</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/PATO_0001415"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A quality inhering in a population by virtue of the proportion of its members that are ill at a given time.</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PATOC:GVG</oboInOwl:hasDbXref>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/PATO_0001555 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PATO_0001555">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PATO_0001241"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/pato#reciprocal_of"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/PATO_0000070"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">The number of parts of a particular type that the bearer entity has. This is a relational quality, and thus holds between two entities: the bearer of the quality, and the type of parts.</obo:IAO_0000115>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">OBO_REL:has_part</oboInOwl:hasDbXref>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">extra or missing physical or functional parts</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">has or lacks parts of type</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">mereological quality</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">number of</oboInOwl:hasExactSynonym>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">quality</oboInOwl:hasOBONamespace>
<oboInOwl:hasRelatedSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">cardinality</oboInOwl:hasRelatedSynonym>
<oboInOwl:hasRelatedSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">number</oboInOwl:hasRelatedSynonym>
<oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PATO:0001555</oboInOwl:id>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/pato#attribute_slim"/>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/pato#relational_slim"/>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/pato.owl"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">has number of</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/PATO_0001555"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">The number of parts of a particular type that the bearer entity has. This is a relational quality, and thus holds between two entities: the bearer of the quality, and the type of parts.</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PATOC:CJM</oboInOwl:hasDbXref>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/PATO_0001788 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PATO_0001788">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/PATO_0001164"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/pato#increased_in_magnitude_relative_to"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/PATO_0000461"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PATO_0001164"/>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PATO_0002305"/>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A density which is higher relative to the normal or average.</obo:IAO_0000115>
<obo:RO_0002604 rdf:resource="http://purl.obolibrary.org/obo/PATO_0001790"/>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">high density</oboInOwl:hasExactSynonym>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">quality</oboInOwl:hasOBONamespace>
<oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PATO:0001788</oboInOwl:id>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/pato#value_slim"/>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/pato.owl"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">increased mass density</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/PATO_0001788"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A density which is higher relative to the normal or average.</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PATOC:GVG</oboInOwl:hasDbXref>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/PATO_0001790 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PATO_0001790">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/PATO_0001164"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/pato#decreased_in_magnitude_relative_to"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/PATO_0000461"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PATO_0001164"/>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PATO_0002303"/>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A density which is lower relative to the normal or average.</obo:IAO_0000115>
<obo:RO_0002604 rdf:resource="http://purl.obolibrary.org/obo/PATO_0001788"/>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">low density</oboInOwl:hasExactSynonym>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">quality</oboInOwl:hasOBONamespace>
<oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PATO:0001790</oboInOwl:id>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/pato#value_slim"/>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/pato.owl"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">decreased mass density</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/PATO_0001790"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A density which is lower relative to the normal or average.</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PATOC:GVG</oboInOwl:hasDbXref>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/PATO_0001997 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PATO_0001997">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/PATO_0000070"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/pato#decreased_in_magnitude_relative_to"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/PATO_0000461"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PATO_0000467"/>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PATO_0002301"/>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">An amount which is relatively low.</obo:IAO_0000115>
<obo:RO_0002604 rdf:resource="http://purl.obolibrary.org/obo/PATO_0000470"/>
<oboInOwl:hasAlternativeId rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PATO:0000419</oboInOwl:hasAlternativeId>
<oboInOwl:hasAlternativeId rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PATO:0000468</oboInOwl:hasAlternativeId>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">decreased number</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">present in fewer numbers in organism</oboInOwl:hasExactSynonym>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">quality</oboInOwl:hasOBONamespace>
<oboInOwl:hasRelatedSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">decreased</oboInOwl:hasRelatedSynonym>
<oboInOwl:hasRelatedSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">reduced</oboInOwl:hasRelatedSynonym>
<oboInOwl:hasRelatedSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">subnumerary</oboInOwl:hasRelatedSynonym>
<oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PATO:0001997</oboInOwl:id>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/pato#value_slim"/>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/pato.owl"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">decreased amount</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/PATO_0001997"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">An amount which is relatively low.</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PATOC:GVG</oboInOwl:hasDbXref>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/PATO_0002003 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PATO_0002003">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PATO_0001241"/>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A quality that inheres in an entire population or part of a population.</obo:IAO_0000115>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">quality</oboInOwl:hasOBONamespace>
<oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PATO:0002003</oboInOwl:id>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/pato#attribute_slim"/>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/pato.owl"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">population quality</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/PATO_0002003"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A quality that inheres in an entire population or part of a population.</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PATOC:GVG</oboInOwl:hasDbXref>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/PATO_0002062 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PATO_0002062">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PATO_0001236"/>
<oboInOwl:created_by rdf:datatype="http://www.w3.org/2001/XMLSchema#string">george</oboInOwl:created_by>
<oboInOwl:creation_date rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2009-06-05T09:16:46Z</oboInOwl:creation_date>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">quality</oboInOwl:hasOBONamespace>
<oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PATO:0002062</oboInOwl:id>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/pato#attribute_slim"/>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/pato.owl"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">physical quality of a process</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/PATO_0002300 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PATO_0002300">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/PATO_0000001"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/pato#increased_in_magnitude_relative_to"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/PATO_0000461"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PATO_0000069"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/pato#increased_in_magnitude_relative_to"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/PATO_0000461"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A quality that has a value that is increased compared to normal or average.</obo:IAO_0000115>
<obo:RO_0002604 rdf:resource="http://purl.obolibrary.org/obo/PATO_0002301"/>
<oboInOwl:created_by rdf:datatype="http://www.w3.org/2001/XMLSchema#string">George Gkoutos</oboInOwl:created_by>
<oboInOwl:creation_date rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2011-06-16T06:39:43Z</oboInOwl:creation_date>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">quality</oboInOwl:hasOBONamespace>
<oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PATO:0002300</oboInOwl:id>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/pato.owl"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">increased quality</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/PATO_0002300"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A quality that has a value that is increased compared to normal or average.</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PATOC:GVG</oboInOwl:hasDbXref>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/PATO_0002301 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PATO_0002301">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/PATO_0000001"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/pato#decreased_in_magnitude_relative_to"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/PATO_0000461"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PATO_0000069"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/pato#decreased_in_magnitude_relative_to"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/PATO_0000461"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A quality that has a value that is decreased compared to normal or average.</obo:IAO_0000115>
<obo:RO_0002604 rdf:resource="http://purl.obolibrary.org/obo/PATO_0002300"/>
<oboInOwl:created_by rdf:datatype="http://www.w3.org/2001/XMLSchema#string">George Gkoutos</oboInOwl:created_by>
<oboInOwl:creation_date rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2011-06-16T06:40:15Z</oboInOwl:creation_date>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">quality</oboInOwl:hasOBONamespace>
<oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PATO:0002301</oboInOwl:id>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/pato.owl"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">decreased quality</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/PATO_0002301"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A quality that has a value that is decreased compared to normal or average.</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PATOC:GVG</oboInOwl:hasDbXref>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/PATO_0002302 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PATO_0002302">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/PATO_0001236"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/pato#decreased_in_magnitude_relative_to"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/PATO_0000461"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PATO_0001236"/>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PATO_0002301"/>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A quality of a process that has a value that is decreased compared to normal or average.</obo:IAO_0000115>
<obo:RO_0002604 rdf:resource="http://purl.obolibrary.org/obo/PATO_0002304"/>
<oboInOwl:created_by rdf:datatype="http://www.w3.org/2001/XMLSchema#string">George Gkoutos</oboInOwl:created_by>
<oboInOwl:creation_date rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2011-06-16T06:50:59Z</oboInOwl:creation_date>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">quality</oboInOwl:hasOBONamespace>
<oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PATO:0002302</oboInOwl:id>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/pato.owl"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">decreased process quality</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/PATO_0002302"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A quality of a process that has a value that is decreased compared to normal or average.</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PATOC:GVG</oboInOwl:hasDbXref>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/PATO_0002303 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PATO_0002303">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/PATO_0001241"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/pato#decreased_in_magnitude_relative_to"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/PATO_0000461"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PATO_0001241"/>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PATO_0002301"/>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A quality of an object that has a value that is decreased compared to normal or average.</obo:IAO_0000115>
<obo:RO_0002604 rdf:resource="http://purl.obolibrary.org/obo/PATO_0002305"/>
<oboInOwl:created_by rdf:datatype="http://www.w3.org/2001/XMLSchema#string">George Gkoutos</oboInOwl:created_by>
<oboInOwl:creation_date rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2011-06-16T06:51:54Z</oboInOwl:creation_date>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">quality</oboInOwl:hasOBONamespace>
<oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PATO:0002303</oboInOwl:id>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/pato.owl"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">decreased object quality</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/PATO_0002303"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A quality of an object that has a value that is decreased compared to normal or average.</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PATOC:GVG</oboInOwl:hasDbXref>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/PATO_0002304 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PATO_0002304">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/PATO_0001236"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/pato#increased_in_magnitude_relative_to"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/PATO_0000461"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PATO_0001236"/>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PATO_0002300"/>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A quality of a process that has a value that is increased compared to normal or average.</obo:IAO_0000115>
<obo:RO_0002604 rdf:resource="http://purl.obolibrary.org/obo/PATO_0002302"/>
<oboInOwl:created_by rdf:datatype="http://www.w3.org/2001/XMLSchema#string">George Gkoutos</oboInOwl:created_by>
<oboInOwl:creation_date rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2011-06-16T06:53:08Z</oboInOwl:creation_date>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">quality</oboInOwl:hasOBONamespace>
<oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PATO:0002304</oboInOwl:id>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/pato.owl"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">increased process quality</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/PATO_0002304"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A quality of a process that has a value that is increased compared to normal or average.</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PATOC:GVG</oboInOwl:hasDbXref>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/PATO_0002305 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PATO_0002305">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/PATO_0001241"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/pato#increased_in_magnitude_relative_to"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/PATO_0000461"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PATO_0001241"/>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PATO_0002300"/>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A quality of an object that has a value that is increased compared to normal or average.</obo:IAO_0000115>
<obo:RO_0002604 rdf:resource="http://purl.obolibrary.org/obo/PATO_0002303"/>
<oboInOwl:created_by rdf:datatype="http://www.w3.org/2001/XMLSchema#string">George Gkoutos</oboInOwl:created_by>
<oboInOwl:creation_date rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2011-06-16T06:54:01Z</oboInOwl:creation_date>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">quality</oboInOwl:hasOBONamespace>
<oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PATO:0002305</oboInOwl:id>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/pato.owl"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">increased object quality</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/PATO_0002305"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A quality of an object that has a value that is increased compared to normal or average.</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PATOC:GVG</oboInOwl:hasDbXref>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/PCO_0000000 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PCO_0000000">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BFO_0000027"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0002351"/>
<owl:allValuesFrom rdf:resource="http://purl.obolibrary.org/obo/CARO_0001010"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0002351"/>
<owl:minQualifiedCardinality rdf:datatype="http://www.w3.org/2001/XMLSchema#nonNegativeInteger">2</owl:minQualifiedCardinality>
<owl:onClass rdf:resource="http://purl.obolibrary.org/obo/CARO_0001010"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000027"/>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PCO_0000031"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0002351"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/CARO_0001010"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0002351"/>
<owl:allValuesFrom rdf:resource="http://purl.obolibrary.org/obo/CARO_0001010"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000112>Examples include: population, community, species (meaning the collection of organisms that makes up a species, not the taxonomic rank), and family.</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
<obo:IAO_0000115 xml:lang="en">A material entity that consists of two or more organisms, viruses, or viroids.</obo:IAO_0000115>
<obo:IAO_0000118>group of organism</obo:IAO_0000118>
<obo:IAO_0000118>organism collection</obo:IAO_0000118>
<rdfs:comment>May be of the same or different species.</rdfs:comment>
<rdfs:label xml:lang="en">collection of organisms</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/PCO_0000001 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PCO_0000001">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PCO_0000018"/>
<obo:IAO_0000112 xml:lang="en"></obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">This a general term that can include every organism of a species living in an area or any subset of them. Subclasses can be more specific as needed.</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
<obo:IAO_0000115 xml:lang="en">A collection of organisms, all of the same species, that live in the same place.</obo:IAO_0000115>
<obo:IAO_0000119>ISBN:0878932739</obo:IAO_0000119>
<rdfs:comment xml:lang="en">It is sometimes difficult to define the physical boundaries of a population. In the case of sexually reproducing organisms, the individuals within a population have the potential to reproduce with one another during the course of their lifetimes. 'Community', as often used to describe a group of humans, is a type of population of organisms.
Classes for population already exist in IDO ('organism population', IDO_0000509) and OBI ('population', OBI_0000181). The definitions should be standardized across OBO Foundry ontologies and only one term used.</rdfs:comment>
<rdfs:label xml:lang="en">population of organisms</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/PCO_0000002 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PCO_0000002">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PCO_0000029"/>
<obo:IAO_0000115 xml:lang="en">A multi-species collection of organisms of at least two different species, living in a particular area. Must have at least two populations of different species as members.</obo:IAO_0000115>
<obo:IAO_0000118 xml:lang="en">multispecies community</obo:IAO_0000118>
<obo:IAO_0000119>ISBN:0865423504</obo:IAO_0000119>
<rdfs:comment xml:lang="en">Ecological community is defined broadly here, but includes both ecological interactions (inherited from parent term community) and spatial co-existence. It may be used to describe every organisms living in an area, but is often used to refer only to organisms of a particular taxon or guild (e.g., the plant community, the insect community, the herbivore community). The word community, as it often used to describe a group of humans living together, is a type of single-species collection of organisms, not an ecological community.</rdfs:comment>
<rdfs:label xml:lang="en">ecological community</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/PCO_0000003 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PCO_0000003">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/PATO_0002003"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000052"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/PCO_0000001"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PATO_0002003"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000052"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/PCO_0000001"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000428"/>
<obo:IAO_0000115 xml:lang="en">A quality that inheres in a population of organisms.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">See Chris's comments on population qualities at: http://code.google.com/p/popcomm-ontology/issues/detail?id=4. These may not belong under BFO:quality. May be better to call them population characteristics, and classify as specifically dependent continuants. Need to look at process profiles in BFO2.</obo:IAO_0000116>
<obo:IAO_0000116>This class is used only for qualities of PCO:population of organsism, while PATO:population quality can inhere in either a population of organisms or an ecological community.</obo:IAO_0000116>
<rdfs:comment xml:lang="en">Includes qualities like population size, population growth rate, carrying capacity, immigration rate, emigration rate, fecundity, and death rate. A population quality may depend on the qualities of individual organisms in the population, but cannot be measured or described for a single organism. This term may be replaced by a PATO term.</rdfs:comment>
<rdfs:label xml:lang="en">quality of a population</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/PCO_0000004 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PCO_0000004">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/PATO_0002003"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000052"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/PCO_0000002"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PATO_0002003"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000052"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/PCO_0000002"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000428"/>
<obo:IAO_0000115 xml:lang="en">A quality that inheres in a community.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">These may not belong under BFO:quality. May be better to call them community characteristics, and classify as specifically dependent continuants. Need to look at process profiles in BFO2.</obo:IAO_0000116>
<rdfs:comment xml:lang="en">Includes qualities like diversity, species richness, stability, resilience, community structure, number of trophic levels. A community quality may depend on the qualities of individual organism in the community, but cannot be measured or described for a single individual.</rdfs:comment>
<rdfs:label xml:lang="en">quality of an ecological community</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/PCO_0000005 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PCO_0000005">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000015"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000057"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/PCO_0000001"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000123"/>
<obo:IAO_0000115 xml:lang="en">A process that has as primary participant a population. Includes processes such as population growth, extinction, evolution, selection, and adaptation. Population processes may depend on the processes of individual organisms {e.g., population growth reflects the cumulative multicellular organism reproduction (GO:0032504) and death (GO:0016265) of all individuals in a population}, but cannot be described for an individual organism. Some of these processes (e.g., evolution, extinction) can also occur at the species level, so PCO distinguishes between, for example, population extinction and species extinction.</obo:IAO_0000115>
<rdfs:comment xml:lang="en">The GO has the terms 'multi-organism process' (GO:0051704) and 'intraspecies interactions between organisms' (GO:0051703), but these categories are only defined for interactions between two individuals. It is unclear at this point if 'biological process' (GO:0008150) encompasses population processes.</rdfs:comment>
<rdfs:label xml:lang="en">population process</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/PCO_0000006 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PCO_0000006">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PATO_0000161"/>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000123"/>
<obo:IAO_0000115>The rate of birth of a population of organisms.</obo:IAO_0000115>
<rdfs:label xml:lang="en">population birth rate</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/PCO_0000007 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PCO_0000007">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PATO_0000161"/>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000123"/>
<obo:IAO_0000115>The rate of death of a population of organsisms.</obo:IAO_0000115>
<rdfs:label xml:lang="en">population death rate</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/PCO_0000008 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PCO_0000008">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PATO_0000161"/>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000123"/>
<obo:IAO_0000115>The rate of growth of a population.</obo:IAO_0000115>
<rdfs:label xml:lang="en">population growth rate</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/PCO_0000009 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PCO_0000009">
<rdfs:subClassOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
<obo:IAO_0000115>The maximum number of individuals that can be supported in a population that is growing according to logistic growth.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">Carrying capacity is better defined as a quality of the environment in which a population lives. This term will be deprecated from PCO and moved to ecoCORE.</obo:IAO_0000116>
<obo:IAO_0000119>ISBN:0878932739</obo:IAO_0000119>
<obo:IAO_0000231 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000423"/>
<rdfs:label xml:lang="en">obsolete carrying capacity</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/PCO_0000010 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PCO_0000010">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PCO_0000004"/>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">The number of different species represented in an ecological community.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">This is a quality of an ecological community (PCO_0000002). If your metric includes the abundances of species (evenness) as well as the number, you should use community species diversity (PCO_0000019).</obo:IAO_0000116>
<obo:IAO_0000119>adapted from http://en.wikipedia.org/wiki/Species_richness</obo:IAO_0000119>
<rdfs:label xml:lang="en">community species richness</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/PCO_0000011 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PCO_0000011">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PCO_0000005"/>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000123"/>
<obo:IAO_0000115>A process that leads to a change in the number of individuals (positive or negative) in a population.</obo:IAO_0000115>
<rdfs:label>population growth</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/PCO_0000012 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PCO_0000012">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PCO_0000011"/>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000123"/>
<obo:IAO_0000115>A population process that leads to an increase in the numbers of individuals in a population following a logistic (S-shaped) curve. Generally occurs when the population has a carrying capacity in a particular habitat.</obo:IAO_0000115>
<rdfs:label>logistic population growth</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/PCO_0000013 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PCO_0000013">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PCO_0000011"/>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000123"/>
<obo:IAO_0000115>A population growth process that leads to an exponential increase in the number of individuals in a population.</obo:IAO_0000115>
<rdfs:label>exponential population growth</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/PCO_0000014 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PCO_0000014">
<rdfs:subClassOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
<obo:IAO_0000116>Interactions are now covered in EcoCore ontology.</obo:IAO_0000116>
<rdfs:label xml:lang="en">obsolete predator role</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/PCO_0000014"/>
<owl:annotatedProperty rdf:resource="http://www.w3.org/2002/07/owl#deprecated"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:annotatedTarget>
<obo:IAO_0000231 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000103"/>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/PCO_0000015 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PCO_0000015">
<rdfs:subClassOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
<obo:IAO_0000116>Interactions are now covered in EcoCore ontology.</obo:IAO_0000116>
<rdfs:label xml:lang="en">obsolete prey role</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/PCO_0000015"/>
<owl:annotatedProperty rdf:resource="http://www.w3.org/2002/07/owl#deprecated"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:annotatedTarget>
<obo:IAO_0000231 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000103"/>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/PCO_0000016 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PCO_0000016">
<rdfs:subClassOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
<obo:IAO_0000116>Interactions are now covered in EcoCore ontology.</obo:IAO_0000116>
<rdfs:label xml:lang="en">obsolete symbiont role</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/PCO_0000016"/>
<owl:annotatedProperty rdf:resource="http://www.w3.org/2002/07/owl#deprecated"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:annotatedTarget>
<obo:IAO_0000231 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000103"/>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/PCO_0000017 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PCO_0000017">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PCO_0000018"/>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PCO_0000059"/>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A collection of organisms that has as members every organism of given species and no organisms of any other species.</obo:IAO_0000115>
<obo:IAO_0000115 xml:lang="en">A collection of organisms that has as parts every organism of a species and no organisms of any other species.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">At the moment there is no way to specify in an OWL axiom that the collection includes every individual of a species. This should be added, if possible.</obo:IAO_0000116>
<oboInOwl:hasDbXref rdf:resource="http://purl.obolibrary.org/obo/GENO_0000113"/>
<oboInOwl:hasDbXref rdf:resource="http://purl.obolibrary.org/obo/TAXRANK_0000006"/>
<oboInOwl:hasDbXref rdf:resource="http://rs.tdwg.org/ontology/voc/TaxonRank#Species"/>
<oboInOwl:hasExactSynonym>taxonomic group</oboInOwl:hasExactSynonym>
<rdfs:comment xml:lang="en">This term is neutral with respect to which organisms are included in a species. Membership will depend on the species concept and the taxonomic assertions used to define the species. These criteria must be specified by the user.</rdfs:comment>
<rdfs:label xml:lang="en">species as a collection of organisms</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/PCO_0000018 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PCO_0000018">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PCO_0000000"/>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A material entity that has as parts two or more organisms, viruses, or viroids of the same species and no members of any other species.</obo:IAO_0000115>
<obo:IAO_0000118 xml:lang="en">collection of organisms of the same species</obo:IAO_0000118>
<rdfs:label xml:lang="en">single-species collection of organisms</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/PCO_0000019 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PCO_0000019">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PCO_0000004"/>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">The number of different species that are represented in a given community, weighted by their abundance. Community species diversity can be calculated in different ways, but consists of two components: species richness and species evenness.</obo:IAO_0000115>
<obo:IAO_0000116>If your metric does not include the abundances of different species, but rather just the numer of species, you should use community species richness (PCO_0000010). More specific subclasses or instances of this class may be created to describe specific ways of measuring diversity.</obo:IAO_0000116>
<obo:IAO_0000119>adapted from http://en.wikipedia.org/wiki/Species_diversity</obo:IAO_0000119>
<rdfs:comment xml:lang="en">The Shannon Index and Simpson Index are examples of ways in which species diversity is quantified.</rdfs:comment>
<rdfs:label xml:lang="en">community species diversity</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/PCO_0000020 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PCO_0000020">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PCO_0000018"/>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000123"/>
<obo:IAO_0000115 xml:lang="en">A domestic group, or a number of domestic groups linked through descent (demonstrated or stipulated) from a common ancestor, marriage, or adoption.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">Needs axioms for family relationships.</obo:IAO_0000116>
<obo:IAO_0000119 xml:lang="en">http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C25173</obo:IAO_0000119>
<rdfs:comment>Family membership through marriage or adoption apply primarily to human families. In most species, family membership is defined by common anscestry.</rdfs:comment>
<rdfs:label xml:lang="en">family</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/PCO_0000021 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PCO_0000021">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PCO_0000005"/>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000123"/>
<obo:IAO_0000115 xml:lang="en">A population process that ultimately leads to the death of all individuals in a population.</obo:IAO_0000115>
<rdfs:label xml:lang="en">population extinction</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/PCO_0000022 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PCO_0000022">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000015"/>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000123"/>
<obo:IAO_0000115 xml:lang="en">A process that ultimately leads to the death of all individuals in a population.</obo:IAO_0000115>
<rdfs:label xml:lang="en">species extinction</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/PCO_0000023 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PCO_0000023">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PCO_0000004"/>
<obo:IAO_0000112 xml:lang="en">If there are 40 foxes, and 1000 dogs, the community is not very even, but if there are 40 foxes and 42 dogs, the community is quite even.</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">A quality of an ecological community that reflects how close in abundance all species in a community are.</obo:IAO_0000115>
<obo:IAO_0000119 xml:lang="en">adapted from http://en.wikipedia.org/wiki/Species_evenness</obo:IAO_0000119>
<rdfs:label xml:lang="en">community species evenness</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/PCO_0000024 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PCO_0000024">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PCO_0000031"/>
<rdfs:subClassOf>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0002351"/>
<owl:allValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_9606"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0002351"/>
<owl:minQualifiedCardinality rdf:datatype="http://www.w3.org/2001/XMLSchema#nonNegativeInteger">1</owl:minQualifiedCardinality>
<owl:onClass rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_9606"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0002321"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/ENVO_01000744"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000123"/>
<obo:IAO_0000115>An organismal entity that consists of one or more people who live in the same dwelling and also share at meals or living accommodation, and may consist of a single family or some other grouping of people.</obo:IAO_0000115>
<obo:IAO_0000117 rdf:resource="https://orcid.org/0000-0002-2999-0103"/>
<obo:IAO_0000119>WEB: http://en.wikipedia.org/wiki/Household</obo:IAO_0000119>
<rdfs:label xml:lang="en">household</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/PCO_0000025 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PCO_0000025">
<rdfs:subClassOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
<obo:IAO_0000231 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000002"/>
<rdfs:comment>This is an example population added to demonstrate the modeling pattern for collections of organisms.</rdfs:comment>
<rdfs:label xml:lang="en">obsolete red population</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/PCO_0000026 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PCO_0000026">
<rdfs:subClassOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
<obo:IAO_0000231 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000002"/>
<rdfs:comment>An example class added to demonstrate the design pattern for collections of organism. Red organism should be automatically classified as a member of red population when the reasoner is synchronized using a DL query.</rdfs:comment>
<rdfs:label xml:lang="en">obsolete red organism</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/PCO_0000027 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PCO_0000027">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/PCO_0000018"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0002351"/>
<owl:allValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_9606"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0002351"/>
<owl:minQualifiedCardinality rdf:datatype="http://www.w3.org/2001/XMLSchema#nonNegativeInteger">2</owl:minQualifiedCardinality>
<owl:onClass rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_9606"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PCO_0000018"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0002351"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_9606"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A collection of organisms of the same species that has as members only humans.</obo:IAO_0000115>
<obo:IAO_0000118 xml:lang="en">human community</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">human population</obo:IAO_0000118>
<rdfs:label xml:lang="en">collection of humans</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/PCO_0000028 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PCO_0000028">
<rdfs:subClassOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
<obo:IAO_0000115>A collection of organisms of the same species whose members are all either genealogically related to each other or have mated with each other.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">Biological or social relations are covered by RO_0002437 (biotically interacts with), but that relations does provide an easy way to specify that two entities are interacting with each other (participating in the same interaction). Until that axiom is specified, the logical definition of this term is incomplete.</obo:IAO_0000116>
<obo:IAO_0000231 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000103"/>
<rdfs:comment xml:lang="en">These relations can include shared values, occupying the same spatial regkion. A community be be a single species collection of organsisms (as in a human community, which is also a type of population) or a or multi-species collection of organisms (as in an ecological community).</rdfs:comment>
<rdfs:label xml:lang="en">obsolete community</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/PCO_0000029 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PCO_0000029">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PCO_0000000"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0002351"/>
<owl:minQualifiedCardinality rdf:datatype="http://www.w3.org/2001/XMLSchema#nonNegativeInteger">2</owl:minQualifiedCardinality>
<owl:onClass rdf:resource="http://purl.obolibrary.org/obo/PCO_0000001"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000123"/>
<obo:IAO_0000115 xml:lang="en">A collection of organisms that consists of two or more organisms from at least two species.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">Need to add axiom to specify that it has at a mimum members of two different species, but not sure how to specify that. Can't say "('has member' only ('member of' min 2 'species as a collection of organisms'))".</obo:IAO_0000116>
<rdfs:comment xml:lang="en"></rdfs:comment>
<rdfs:label xml:lang="en">multi-species collection of organisms</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/PCO_0000030 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PCO_0000030">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PCO_0000024"/>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000123"/>
<obo:IAO_0000115>A household in which the majority of the income of its members is derived from agricultural activities.</obo:IAO_0000115>
<obo:IAO_0000116>This is a more narrow definition in which the majority of income of a house comes from agricultural activities, as opposed to the broad definition in which any income comes from agricultural activities. The narrow definition was chosen to be consistent with the SDGIO (UN Sustainable Development Goals) which requested this term.</obo:IAO_0000116>
<rdfs:label xml:lang="en">agricultural household</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/PCO_0000031 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PCO_0000031">
<owl:equivalentClass>
<owl:Class>
<owl:unionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CARO_0001010"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/PCO_0000000"/>
</owl:unionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115>A material entity that is one or more organisms, viruses or viroids.</obo:IAO_0000115>
<rdfs:label xml:lang="en">organismal entity</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/PCO_0000032 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PCO_0000032">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PCO_0000020"/>
<obo:IAO_0000115>A collection of organisms of the same species whose members are all either genealogically related to each other or have mated with each other.</obo:IAO_0000115>
<obo:IAO_0000118>genealogical family</obo:IAO_0000118>
<obo:IAO_0000119>Matthew Brush, as part of http://datamodel.clinicalgenome.org/interpretation/</obo:IAO_0000119>
<rdfs:label xml:lang="en">biological family</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/PCO_0000033 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PCO_0000033">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GO_0035176"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000057"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/PCO_0000027"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000115 xml:lang="en">A type of social behavior in which a collection of humans intentionally gathers together on a temporary basis to engage socially.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">Intented to replace http://purl.obolibrary.org/obo/GENEPIO_0001029</obo:IAO_0000116>
<obo:IAO_0000119 xml:lang="en">GenEpiO curators</obo:IAO_0000119>
<rdfs:label xml:lang="en">human social gathering activity</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/PCO_0000034 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PCO_0000034">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PCO_0000033"/>
<obo:IAO_0000115 xml:lang="en">A human social event in which humans living in the same area or neighborhood gather to carry out activiites relevent to the people living in the area.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">Intended to replace http://purl.obolibrary.org/obo/GENEPIO_0001034</obo:IAO_0000116>
<obo:IAO_0000119 xml:lang="en">GenEpio curators</obo:IAO_0000119>
<rdfs:label xml:lang="en">human community event</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/PCO_0000035 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PCO_0000035">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PCO_0000033"/>
<obo:IAO_0000115 xml:lang="en">A human social gathering in which the intention is to have a good time. Often the intention is to celebrate something like a birthday, anniversary, or holiday, but there is not always a purpose.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">Intended to replace http://purl.obolibrary.org/obo/GENEPIO_0001030</obo:IAO_0000116>
<obo:IAO_0000119 xml:lang="en">GenEpiO curators</obo:IAO_0000119>
<rdfs:label xml:lang="en">party</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/PCO_0000037 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PCO_0000037">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PCO_0000033"/>
<obo:IAO_0000115 xml:lang="en">A human social gathering at which each participant is expected to bring food to share. A potluck also can be party, a social meal, or some other type of social gathering.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">Intended to replace http://purl.obolibrary.org/obo/GENEPIO_0001033</obo:IAO_0000116>
<obo:IAO_0000119 xml:lang="en">GenEpio curators</obo:IAO_0000119>
<rdfs:label xml:lang="en">potluck</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/PCO_0000038 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PCO_0000038">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PCO_0000033"/>
<obo:IAO_0000115 xml:lang="en">A human social gathering at which two people are married. May include a legal or social ceremony.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">Intended to replace http://purl.obolibrary.org/obo/GENEPIO_0001031</obo:IAO_0000116>
<obo:IAO_0000119 xml:lang="en">GenEpio curators</obo:IAO_0000119>
<rdfs:label xml:lang="en">wedding</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/PCO_0000039 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PCO_0000039">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PCO_0000033"/>
<obo:IAO_0000115 xml:lang="en">A human social gathering at which the key participant is an expectant parent and other guests bring presents for the soon to be born baby.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">Intended to replace http://purl.obolibrary.org/obo/GENEPIO_0001032</obo:IAO_0000116>
<obo:IAO_0000119 xml:lang="en">GenEpiO curators</obo:IAO_0000119>
<rdfs:label xml:lang="en">baby shower</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/PCO_0000047 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PCO_0000047">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PCO_0000002"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/ENVO_01001369"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000115 xml:lang="en">An ecological community which is composed primarily of dwarf or short mangroves, often populations of Laguncularia racemosa, Avicennia germinans, Sarcocornia pacifica, or Batis maritima.</obo:IAO_0000115>
<dc:contributor xml:lang="en">https://orcid.org/0000-0002-4366-3088</dc:contributor>
<oboInOwl:hasDbXref>https://cmecscatalog.org/cmecs/classification/unit/577.html</oboInOwl:hasDbXref>
<oboInOwl:hasRelatedSynonym xml:lang="en">mangrove community</oboInOwl:hasRelatedSynonym>
<oboInOwl:hasRelatedSynonym xml:lang="en">tidal shrubland community</oboInOwl:hasRelatedSynonym>
<rdfs:label xml:lang="en">tidal mangrove shrubland community</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/PCO_0000048 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PCO_0000048">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PATO_0001241"/>
<obo:IAO_0000115 xml:lang="en">A physical object quality that is inhered in a material entity that is too small to be viewed by the unaided eye.</obo:IAO_0000115>
<rdfs:comment xml:lang="en">should move to PATO</rdfs:comment>
<rdfs:label xml:lang="en">invisible to unaided eye</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/PCO_0000049 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PCO_0000049">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CARO_0001010"/>
<oboInOwl:hasExactSynonym xml:lang="en">microbial organism</oboInOwl:hasExactSynonym>
<rdfs:label xml:lang="en">microbe</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/PCO_0000050 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PCO_0000050">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0002351"/>
<owl:allValuesFrom rdf:resource="http://purl.obolibrary.org/obo/PCO_0000049"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0002351"/>
<owl:minQualifiedCardinality rdf:datatype="http://www.w3.org/2001/XMLSchema#nonNegativeInteger">2</owl:minQualifiedCardinality>
<owl:onClass rdf:resource="http://purl.obolibrary.org/obo/PCO_0000049"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0002351"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/PCO_0000049"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000115 xml:lang="en">A collection of organisms consisting of two or more microbes.</obo:IAO_0000115>
<dc:creator xml:lang="en">https://orcid.org/0000-0001-8815-0078</dc:creator>
<rdfs:label xml:lang="en">collection of microbial organisms</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/PCO_0000051 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PCO_0000051">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PCO_0000029"/>
<obo:IAO_0000115 xml:lang="en">A multi-species collection of organisms that consists of two or more microbes from at least two species.</obo:IAO_0000115>
<dc:creator xml:lang="en">https://orcid.org/0000-0001-8815-0078</dc:creator>
<rdfs:label xml:lang="en">multi-species collection of microbes</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/PCO_0000052 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PCO_0000052">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0002351"/>
<owl:allValuesFrom rdf:resource="http://purl.obolibrary.org/obo/PCO_0000049"/>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0002351"/>
<owl:allValuesFrom>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0002350"/>
<owl:qualifiedCardinality rdf:datatype="http://www.w3.org/2001/XMLSchema#nonNegativeInteger">1</owl:qualifiedCardinality>
<owl:onClass rdf:resource="http://purl.obolibrary.org/obo/PCO_0000017"/>
</owl:Restriction>
</owl:allValuesFrom>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0002351"/>
<owl:minQualifiedCardinality rdf:datatype="http://www.w3.org/2001/XMLSchema#nonNegativeInteger">2</owl:minQualifiedCardinality>
<owl:onClass rdf:resource="http://purl.obolibrary.org/obo/PCO_0000049"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PCO_0000050"/>
<obo:IAO_0000115 xml:lang="en">A single-species collection of organisms that consists of two or more microbes of the same species and no members of any other species.</obo:IAO_0000115>
<dc:creator xml:lang="en">https://orcid.org/0000-0001-8815-0078</dc:creator>
<rdfs:label xml:lang="en">single species collection of microbes</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/PCO_0000053 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PCO_0000053">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PCO_0000001"/>
<obo:IAO_0000115 xml:lang="en">A population of organisms consisting of only microbes of the same species, that live in the same place.</obo:IAO_0000115>
<dc:creator xml:lang="en">https://orcid.org/0000-0001-8815-0078</dc:creator>
<oboInOwl:hasBroadSynonym xml:lang="en">microbiota</oboInOwl:hasBroadSynonym>
<rdfs:label xml:lang="en">microbial population</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/PCO_0000054 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PCO_0000054">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/STATO_0000047"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000136"/>
<owl:allValuesFrom rdf:resource="http://purl.obolibrary.org/obo/CARO_0000012"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
<obo:IAO_0000115>A count data item of the number of steps in the line of descent from a common ancestor for a multicellular organism.</obo:IAO_0000115>
<obo:IAO_0000117 rdf:resource="https://orcid.org/0000-0002-2999-0103"/>
<oboInOwl:hasBroadSynonym>number of generations</oboInOwl:hasBroadSynonym>
<rdfs:label xml:lang="en">number of generations of multicellular organism</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/PCO_0000054"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget>A count data item of the number of steps in the line of descent from a common ancestor for a multicellular organism.</owl:annotatedTarget>
<rdfs:comment rdf:resource="http://purl.obolibrary.org/obo/NCIT_C88214"/>
<rdfs:comment rdf:resource="http://www.ebi.ac.uk/efo/EFO_0000507"/>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/PCO_0000057 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PCO_0000057">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PCO_0000003"/>
<rdfs:subClassOf>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/PATO_0001788"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000052"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/PCO_0000001"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</rdfs:subClassOf>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
<obo:IAO_0000115>An increased mass density of a population of organisms such that the density of organisms in an area is increased beyond sustainable levels.</obo:IAO_0000115>
<obo:IAO_0000117 rdf:resource="https://orcid.org/0000-0001-8815-0078"/>
<oboInOwl:hasExactSynonym>increased density of population</oboInOwl:hasExactSynonym>
<rdfs:label xml:lang="en">overcrowded population</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/PCO_0000058 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PCO_0000058">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/PCO_0000057"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000052"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/PCO_0000027"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PCO_0000057"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000052"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/PCO_0000027"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
<obo:IAO_0000115>A quality of a human population such that the density humans in an area is increased beyond sustainable levels.</obo:IAO_0000115>
<obo:IAO_0000117 rdf:resource="https://orcid.org/0000-0001-8815-0078"/>
<rdfs:label xml:lang="en">overcrowded human population</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/PCO_0000059 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PCO_0000059">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PCO_0000000"/>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000428"/>
<obo:IAO_0000115>A collection of organisms that has as members every organism of a taxon and no organisms of any other equal or higher ranked taxon. The taxon may be at any level. If the taxon is species, then this is the same as the class species as a collection of organisms. When defining a taxon, it is generally understood that members include both living organisms and dead organisms that are known through specimens or observations.</obo:IAO_0000115>
<obo:IAO_0000117 rdf:resource="https://orcid.org/0000-0001-8815-0078"/>
<oboInOwl:hasDbXref rdf:resource="http://edamontology.org/data_1868"/>
<rdfs:comment>This term is neutral with respect to which organisms are included in a taxon. Membership will depend on the taxon concept and the assertions used to define the taxon. These criteria must be specified by the user. The best practice is to refer to a formal taxon description, rather than informal names "Genus species" without an authority.</rdfs:comment>
<rdfs:label xml:lang="en">taxon as collection of organisms</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/PCO_0000060 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PCO_0000060">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ECOCORE_00000146"/>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PCO_0000049"/>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
<obo:IAO_0000115>An organism or virus or viroid that is a microbe and a parasite.</obo:IAO_0000115>
<obo:IAO_0000117 rdf:resource="https://orcid.org/0000-0001-8815-0078"/>
<rdfs:label xml:lang="en">microbial parasite</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/PCO_0000061 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PCO_0000061">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PCO_0000050"/>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PCO_0000053"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0002351"/>
<owl:allValuesFrom rdf:resource="http://purl.obolibrary.org/obo/PCO_0000060"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000112 rdf:resource="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4811772/"/>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
<obo:IAO_0000115>A microbial population of parasites that is defined by shared features such as genetic markers reflecting a common origin and distinguishing the population from other related parasite populations.</obo:IAO_0000115>
<obo:IAO_0000117 rdf:resource="https://orcid.org/0000-0001-8815-0078"/>
<obo:IAO_0000117>VEuPathDB</obo:IAO_0000117>
<rdfs:label xml:lang="en">parasite isolate population</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/PCO_0000062 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PCO_0000062">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PCO_0000019"/>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
<obo:IAO_0000115>A community species diversity metric that accounts for both the abundance and evenness of the species present quantified via the following formula: the negative sum of, the product of the proportion of species i relative to the total number of species (pi) multiplied by the natural logarithm of this proportion (ln pi).</obo:IAO_0000115>
<obo:IAO_0000119 rdf:resource="http://www.tiem.utk.edu/~gross/bioed/bealsmodules/shannonDI.html"/>
<obo:IAO_0000119 rdf:resource="https://en.wikipedia.org/wiki/Diversity_index#Shannon_index"/>
<oboInOwl:hasExactSynonym>Shannon entropy</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>Shannon's diversity index</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>Shannon-Wiener index</oboInOwl:hasExactSynonym>
<rdfs:label xml:lang="en">Shannon diversity index</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/PCO_0000063 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PCO_0000063">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PCO_0000019"/>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
<obo:IAO_0000115>A community species diversity metric that is quantified via the following formula: the reciprocal of the sum of squared proportion of species i relative to the total number of species (pi).</obo:IAO_0000115>
<obo:IAO_0000119 rdf:resource="http://www.tiem.utk.edu/~gross/bioed/bealsmodules/simpsonDI.html"/>
<obo:IAO_0000119 rdf:resource="https://en.wikipedia.org/wiki/Diversity_index#Simpson_index"/>
<oboInOwl:hasExactSynonym>Simpson index</oboInOwl:hasExactSynonym>
<rdfs:label xml:lang="en">Simpson diversity index</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/PCO_0000064 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PCO_0000064">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PCO_0000019"/>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
<obo:IAO_0000115>A community species diversity metric that is quantified via the following formula: the sum of squared proportion of species i relative to the total number of species (pi).</obo:IAO_0000115>
<obo:IAO_0000119 rdf:resource="http://www.tiem.utk.edu/~gross/bioed/bealsmodules/simpsonDI.html"/>
<obo:IAO_0000119 rdf:resource="https://en.wikipedia.org/wiki/Diversity_index#Inverse_Simpson_index"/>
<rdfs:label xml:lang="en">inverse Simpson diversity index</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/PCO_0000073 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PCO_0000073">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CARO_0010004"/>
<obo:IAO_0000115>An organism that is part of a polyphyletic group of mostly photosynthetic Eukaryotes encompassing green plants excluding Embriophyta (land plants). Included organisms range from unicellular microalgae, such as Chlorella and diatoms to multicellular forms such as giant kelp.</obo:IAO_0000115>
<obo:IAO_0000119 rdf:resource="https://en.wikipedia.org/wiki/Algae"/>
<oboInOwl:hasExactSynonym>alga</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>algae</oboInOwl:hasExactSynonym>
<oboInOwl:hasNarrowSynonym>seaweed</oboInOwl:hasNarrowSynonym>
<rdfs:label xml:lang="en">alga excluding Cyanobacteria</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/PCO_0000074 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PCO_0000074">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PCO_0000019"/>
<obo:IAO_0000115>A community species diversity that is the mean species diversity at a site or within a specific habitat.</obo:IAO_0000115>
<obo:IAO_0000117 rdf:resource="https://orcid.org/0000-0001-8815-0078"/>
<obo:IAO_0000119 rdf:resource="https://en.wikipedia.org/wiki/Alpha_diversity"/>
<oboInOwl:hasExactSynonym>α-diversity</oboInOwl:hasExactSynonym>
<rdfs:label xml:lang="en">alpha diversity</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/PCO_0000075 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PCO_0000075">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PCO_0000019"/>
<obo:IAO_0000115>A community species diversity that is the ratio between regional and local species diversity.</obo:IAO_0000115>
<obo:IAO_0000117 rdf:resource="https://orcid.org/0000-0001-8815-0078"/>
<obo:IAO_0000119 rdf:resource="https://en.wikipedia.org/wiki/Beta_diversity"/>
<oboInOwl:hasExactSynonym>true beta diversity</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>β-diversity</oboInOwl:hasExactSynonym>
<rdfs:label xml:lang="en">beta diversity</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/PCO_0000076 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PCO_0000076">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PCO_0000019"/>
<obo:IAO_0000115>A community species diversity that is the total species diversity in a landscape. The area or landscape of interest may be of very different sizes in different situations, but it should encompass multiple sites or habitats as measured by alpha diversity.</obo:IAO_0000115>
<obo:IAO_0000117 rdf:resource="https://orcid.org/0000-0001-8815-0078"/>
<obo:IAO_0000119 rdf:resource="https://en.wikipedia.org/wiki/Gamma_diversity"/>
<oboInOwl:hasExactSynonym>γ-diversity</oboInOwl:hasExactSynonym>
<rdfs:label xml:lang="en">gamma diversity</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/PCO_0000077 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PCO_0000077">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PATO_0001019"/>
<obo:IAO_0000116>TBD: add logical definition</obo:IAO_0000116>
<obo:IAO_0000117 rdf:resource="https://orcid.org/0000-0001-6284-4821"/>
<obo:IAO_0000117 rdf:resource="https://orcid.org/0000-0001-8815-0078"/>
<obo:IAO_0000117>The density of plants in an ecological community or population, often measured as the number of plants per area.</obo:IAO_0000117>
<rdfs:label xml:lang="en">plant density</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/PCO_0000078 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PCO_0000078">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PCO_0000077"/>
<obo:IAO_0000115>The density of seedlings in an ecological community or population, often measured as the number of seedlings per area.</obo:IAO_0000115>
<obo:IAO_0000116>TBD: add logical definition</obo:IAO_0000116>
<obo:IAO_0000117 rdf:resource="https://orcid.org/0000-0001-6284-4821"/>
<obo:IAO_0000117 rdf:resource="https://orcid.org/0000-0001-8815-0078"/>
<rdfs:label xml:lang="en">seedling density</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/PCO_0000079 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PCO_0000079">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PCO_0000003"/>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PCO_0000077"/>
<obo:IAO_0000115>The density of plants in a population or organisms (a single species), often measured as the number of plants per area.</obo:IAO_0000115>
<obo:IAO_0000116>TBD: add logical definition</obo:IAO_0000116>
<obo:IAO_0000117 rdf:resource="https://orcid.org/0000-0001-6284-4821"/>
<obo:IAO_0000117 rdf:resource="https://orcid.org/0000-0001-8815-0078"/>
<rdfs:label xml:lang="en">plant density of a population</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/PCO_0000080 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PCO_0000080">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PCO_0000004"/>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PCO_0000077"/>
<obo:IAO_0000115>The density of plants in an ecological community (multiple species), often measured as the number of plants per area.</obo:IAO_0000115>
<obo:IAO_0000116>TBD: add logical definition</obo:IAO_0000116>
<obo:IAO_0000117 rdf:resource="https://orcid.org/0000-0001-6284-4821"/>
<obo:IAO_0000117 rdf:resource="https://orcid.org/0000-0001-8815-0078"/>
<rdfs:label xml:lang="en">plant density of an ecological community</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/PCO_0000081 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PCO_0000081">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PCO_0000003"/>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PCO_0000078"/>
<obo:IAO_0000115>The density of seedlings in a population or organisms (a single species), often measured as the number of seedlings per area.</obo:IAO_0000115>
<obo:IAO_0000116>TBD: add logical definition</obo:IAO_0000116>
<obo:IAO_0000117 rdf:resource="https://orcid.org/0000-0001-6284-4821"/>
<obo:IAO_0000117 rdf:resource="https://orcid.org/0000-0001-8815-0078"/>
<rdfs:label xml:lang="en">seedling density of a population</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/PCO_0000082 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PCO_0000082">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PCO_0000004"/>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PCO_0000078"/>
<obo:IAO_0000115>The density of seedlings in an ecological community (multiple species), often measured as the number of plants per area.</obo:IAO_0000115>
<obo:IAO_0000116>TBD: add logical definition</obo:IAO_0000116>
<obo:IAO_0000117 rdf:resource="https://orcid.org/0000-0001-6284-4821"/>
<obo:IAO_0000117 rdf:resource="https://orcid.org/0000-0001-8815-0078"/>
<rdfs:label xml:lang="en">seedling density of an ecological community</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/PCO_0001000 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PCO_0001000">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/PCO_0000000"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0002351"/>
<owl:qualifiedCardinality rdf:datatype="http://www.w3.org/2001/XMLSchema#nonNegativeInteger">2</owl:qualifiedCardinality>
<owl:onClass rdf:resource="http://purl.obolibrary.org/obo/CARO_0001010"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PCO_0000000"/>
<obo:IAO_0000115 xml:lang="en">A collection of organisms that consists of exactly two organism, viruses, or viroids that are interacting with each other.</obo:IAO_0000115>
<rdfs:label xml:lang="en">pair of interacting organisms</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/PCO_0001001 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PCO_0001001">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PCO_0000018"/>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PCO_0001000"/>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000428"/>
<obo:IAO_0000115>A pair of interacting organisms that consists of exactly two organism, viruses, or viroids of the same species that are interacting with each other.</obo:IAO_0000115>
<rdfs:label xml:lang="en">pair of interacting organisms of the same species</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/PCO_1000000 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PCO_1000000">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PCO_0000001"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000056"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/PCO_1000001"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000123"/>
<obo:IAO_0000115>A population which is participating in a migration process.</obo:IAO_0000115>
<rdfs:label xml:lang="en">migratory population</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/PCO_1000001 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PCO_1000001">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PCO_0000005"/>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000123"/>
<obo:IAO_0000115>A population process during which a population moves from one area to another.</obo:IAO_0000115>
<obo:IAO_0000119>https://en.wikipedia.org/wiki/Migration</obo:IAO_0000119>
<rdfs:comment>The distance between the areas is not specified here, nor is the minimum distance required for such movements to be considered migrations.</rdfs:comment>
<rdfs:label xml:lang="en">population migration</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/PCO_1000002 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PCO_1000002">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PCO_1000001"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000057"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/PCO_0000027"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000123"/>
<obo:IAO_0000115>A population migration during which a population of humans moves from one area to another with the intention of settling permanently in the new location.</obo:IAO_0000115>
<obo:IAO_0000119>https://en.wikipedia.org/wiki/Human_migration</obo:IAO_0000119>
<rdfs:comment>The distance between the areas is not specified here, nor is the minimum distance required for such movements to be considered migrations. "Nomadic movements are normally not regarded as migrations as there is no intention to settle in the new place and because the movement is generally seasonal. Only a few nomadic people have retained this form of lifestyle in modern times. Also, the temporary movement of people for the purpose of travel, tourism, pilgrimages, or the commute is not regarded as migration, in the absence of an intention to live and settle in the visited places." - https://en.wikipedia.org/wiki/Human_migration</rdfs:comment>
<rdfs:label xml:lang="en">human population migration</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/PCO_1000003 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PCO_1000003">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PCO_0000027"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000056"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/PCO_1000002"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000123"/>
<obo:IAO_0000115>A migratory population of humans, travelling with the intention of settling in a new area.</obo:IAO_0000115>
<obo:IAO_0000119>https://en.wikipedia.org/wiki/Human_migration</obo:IAO_0000119>
<rdfs:label xml:lang="en">human migratory population</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/PCO_1000004 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PCO_1000004">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PCO_0000002"/>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PCO_0000051"/>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
<obo:IAO_0000115>An ecological community which is composed of co-existing populations of microbial organisms that interact, directly or indirectly, such that they impact one another's ecological fitness.</obo:IAO_0000115>
<obo:IAO_0000116>A class for a collection of organisms considered "microbial" and an accompanying quality in PATO (e.g. "microscopic") would be useful to better axiomatise this class. See https://github.com/PopulationAndCommunityOntology/pco/issues/22</obo:IAO_0000116>
<obo:IAO_0000117>http://orcid.org/0000-0002-4366-3088</obo:IAO_0000117>
<obo:IAO_0000119>http://dx.doi.org/10.1038/ismej.2009.88</obo:IAO_0000119>
<oboInOwl:hasBroadSynonym xml:lang="en">microbiota</oboInOwl:hasBroadSynonym>
<rdfs:comment>The definition of a microbial species is deeply debated, however, units of phylogenetic and functional diversity are recognised with respect to their varying roles in an ecosystem. In turn, there exist multiple operational definitions of microbial community, such as local, phenomenological, and indexical communities. This class seeks to capture microbial communities in a very broad sense, as collections of phylogenetically and functionally divergent microbial organisms co-existing, potentially interacting, and competing for niche space in the same ecosystem over a period of time in which their causal footprints overlap one another.</rdfs:comment>
<rdfs:label xml:lang="en">microbial community</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/STATO_0000047 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/STATO_0000047">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000109"/>
<obo:IAO_0000112 xml:lang="en">a count of 4 resulting from counting limbs in humans</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">a count is a data item denoted by an integer and represented the number of instances or occurences of an entity</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Alejandra Gonzalez-Beltran</obo:IAO_0000117>
<obo:IAO_0000117>Orlaith Burke</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">Philippe Rocca-Serra</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">STATO</obo:IAO_0000119>
<obo:STATO_0000032 xml:lang="en"></obo:STATO_0000032>
<rdfs:label xml:lang="en">count</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/pco.owl/PCO_0000030 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/pco.owl/PCO_0000030">
<rdfs:subClassOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
<obo:IAO_0000115>A material entity that is one or more organisms, viruses or viroids.</obo:IAO_0000115>
<obo:IAO_0000231>wrong IRI form</obo:IAO_0000231>
<obo:IAO_0100001>http://purl.obolibrary.org/obo/PCO_0000031</obo:IAO_0100001>
<rdfs:label xml:lang="en">obsolete organismal entity</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:Class>
<!-- http://www.geneontology.org/formats/oboInOwl#ObsoleteClass -->
<owl:Class rdf:about="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
<!-- http://www.w3.org/2002/07/owl#Nothing -->
<rdf:Description rdf:about="http://www.w3.org/2002/07/owl#Nothing">
<rdfs:isDefinedBy rdf:resource="http://www.w3.org/2002/07/owl.owl"/>
</rdf:Description>
<!-- https://purl.obolibrary.org/obo/PCO_0000040 -->
<owl:Class rdf:about="https://purl.obolibrary.org/obo/PCO_0000040">
<rdfs:subClassOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
<obo:IAO_0000115 xml:lang="en">An ecological community which is composed primarily of dwarf or short mangroves, often populations of Laguncularia racemosa, Avicennia germinans, Sarcocornia pacifica, or Batis maritima.</obo:IAO_0000115>
<obo:IAO_0000231 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000103"/>
<dc:contributor xml:lang="en">https://orcid.org/0000-0002-4366-3088</dc:contributor>
<oboInOwl:hasDbXref>https://cmecscatalog.org/cmecs/classification/unit/577.html</oboInOwl:hasDbXref>
<oboInOwl:hasRelatedSynonym xml:lang="en">mangrove community</oboInOwl:hasRelatedSynonym>
<oboInOwl:hasRelatedSynonym xml:lang="en">tidal shrubland community</oboInOwl:hasRelatedSynonym>
<rdfs:label xml:lang="en">obsolete tidal mangrove shrubland community</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:Class>
<!-- https://purl.obolibrary.org/obo/PCO_0000041 -->
<owl:Class rdf:about="https://purl.obolibrary.org/obo/PCO_0000041">
<rdfs:subClassOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
<obo:IAO_0000115 xml:lang="en">A physical object quality that is inhered in a material entity that is too small to be viewed by the unaided eye.</obo:IAO_0000115>
<obo:IAO_0000231 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000103"/>
<rdfs:comment xml:lang="en">should move to PATO</rdfs:comment>
<rdfs:label xml:lang="en">obsolete invisible to unaided eye</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:Class>
<!-- https://purl.obolibrary.org/obo/PCO_0000042 -->
<owl:Class rdf:about="https://purl.obolibrary.org/obo/PCO_0000042">
<rdfs:subClassOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
<obo:IAO_0000231 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000103"/>
<oboInOwl:hasExactSynonym xml:lang="en">microbial organism</oboInOwl:hasExactSynonym>
<rdfs:label xml:lang="en">obsolete microbe</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:Class>
<!-- https://purl.obolibrary.org/obo/PCO_0000043 -->
<owl:Class rdf:about="https://purl.obolibrary.org/obo/PCO_0000043">
<rdfs:subClassOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
<obo:IAO_0000115 xml:lang="en">A collection of organisms consisting of two or more microbes.</obo:IAO_0000115>
<obo:IAO_0000231 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000103"/>
<dc:creator xml:lang="en">https://orcid.org/0000-0001-8815-0078</dc:creator>
<rdfs:label xml:lang="en">obsolete collection of microbial organisms</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:Class>
<!-- https://purl.obolibrary.org/obo/PCO_0000044 -->
<owl:Class rdf:about="https://purl.obolibrary.org/obo/PCO_0000044">
<rdfs:subClassOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
<obo:IAO_0000115 xml:lang="en">A multi-species collection of organisms that consists of two or more microbes from at least two species.</obo:IAO_0000115>
<obo:IAO_0000231 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000103"/>
<dc:creator xml:lang="en">https://orcid.org/0000-0001-8815-0078</dc:creator>
<rdfs:label xml:lang="en">obsolete multi-species collection of microbes</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:Class>
<!-- https://purl.obolibrary.org/obo/PCO_0000045 -->
<owl:Class rdf:about="https://purl.obolibrary.org/obo/PCO_0000045">
<rdfs:subClassOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
<obo:IAO_0000115 xml:lang="en">A single-species collection of organisms that consists of two or more microbes of the same species and no members of any other species.</obo:IAO_0000115>
<obo:IAO_0000231 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000103"/>
<dc:creator xml:lang="en">https://orcid.org/0000-0001-8815-0078</dc:creator>
<rdfs:label xml:lang="en">obsolete single species collection of microbes</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:Class>
<!-- https://purl.obolibrary.org/obo/PCO_0000046 -->
<owl:Class rdf:about="https://purl.obolibrary.org/obo/PCO_0000046">
<rdfs:subClassOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/>
<obo:IAO_0000115 xml:lang="en">A population of organisms consisting of only microbes of the same species, that live in the same place.</obo:IAO_0000115>
<obo:IAO_0000231 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000103"/>
<dc:creator xml:lang="en">https://orcid.org/0000-0001-8815-0078</dc:creator>
<oboInOwl:hasBroadSynonym xml:lang="en">microbiota</oboInOwl:hasBroadSynonym>
<rdfs:label xml:lang="en">obsolete microbial population</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:Class>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Individuals
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://purl.obolibrary.org/obo/IAO_0000002 -->
<owl:NamedIndividual rdf:about="http://purl.obolibrary.org/obo/IAO_0000002">
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/IAO_0000078"/>
<obo:IAO_0000111 xml:lang="en">example to be eventually removed</obo:IAO_0000111>
<rdfs:label xml:lang="en">example to be eventually removed</rdfs:label>
</owl:NamedIndividual>
<!-- http://purl.obolibrary.org/obo/IAO_0000103 -->
<owl:NamedIndividual rdf:about="http://purl.obolibrary.org/obo/IAO_0000103">
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/IAO_0000225"/>
<obo:IAO_0000111 xml:lang="en">failed exploratory term</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">The term was used in an attempt to structure part of the ontology but in retrospect failed to do a good job</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Person:Alan Ruttenberg</obo:IAO_0000117>
<rdfs:label xml:lang="en">failed exploratory term</rdfs:label>
</owl:NamedIndividual>
<!-- http://purl.obolibrary.org/obo/IAO_0000120 -->
<owl:NamedIndividual rdf:about="http://purl.obolibrary.org/obo/IAO_0000120">
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/IAO_0000078"/>
<obo:IAO_0000111 xml:lang="en">metadata complete</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">Class has all its metadata, but is either not guaranteed to be in its final location in the asserted IS_A hierarchy or refers to another class that is not complete.</obo:IAO_0000115>
<rdfs:label xml:lang="en">metadata complete</rdfs:label>
</owl:NamedIndividual>
<!-- http://purl.obolibrary.org/obo/IAO_0000121 -->
<owl:NamedIndividual rdf:about="http://purl.obolibrary.org/obo/IAO_0000121">
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/IAO_0000078"/>
<obo:IAO_0000111 xml:lang="en">organizational term</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">Term created to ease viewing/sort terms for development purpose, and will not be included in a release</obo:IAO_0000115>
<rdfs:label xml:lang="en">organizational term</rdfs:label>
</owl:NamedIndividual>
<!-- http://purl.obolibrary.org/obo/IAO_0000122 -->
<owl:NamedIndividual rdf:about="http://purl.obolibrary.org/obo/IAO_0000122">
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/IAO_0000078"/>
<obo:IAO_0000111 xml:lang="en">ready for release</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">Class has undergone final review, is ready for use, and will be included in the next release. Any class lacking "ready_for_release" should be considered likely to change place in hierarchy, have its definition refined, or be obsoleted in the next release. Those classes deemed "ready_for_release" will also derived from a chain of ancestor classes that are also "ready_for_release."</obo:IAO_0000115>
<rdfs:label xml:lang="en">ready for release</rdfs:label>
</owl:NamedIndividual>
<!-- http://purl.obolibrary.org/obo/IAO_0000123 -->
<owl:NamedIndividual rdf:about="http://purl.obolibrary.org/obo/IAO_0000123">
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/IAO_0000078"/>
<obo:IAO_0000111 xml:lang="en">metadata incomplete</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">Class is being worked on; however, the metadata (including definition) are not complete or sufficiently clear to the branch editors.</obo:IAO_0000115>
<rdfs:label xml:lang="en">metadata incomplete</rdfs:label>
</owl:NamedIndividual>
<!-- http://purl.obolibrary.org/obo/IAO_0000124 -->
<owl:NamedIndividual rdf:about="http://purl.obolibrary.org/obo/IAO_0000124">
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/IAO_0000078"/>
<obo:IAO_0000111 xml:lang="en">uncurated</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">Nothing done yet beyond assigning a unique class ID and proposing a preferred term.</obo:IAO_0000115>
<rdfs:label xml:lang="en">uncurated</rdfs:label>
</owl:NamedIndividual>
<!-- http://purl.obolibrary.org/obo/IAO_0000125 -->
<owl:NamedIndividual rdf:about="http://purl.obolibrary.org/obo/IAO_0000125">
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/IAO_0000078"/>
<obo:IAO_0000111 xml:lang="en">pending final vetting</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">All definitions, placement in the asserted IS_A hierarchy and required minimal metadata are complete. The class is awaiting a final review by someone other than the term editor.</obo:IAO_0000115>
<rdfs:label xml:lang="en">pending final vetting</rdfs:label>
</owl:NamedIndividual>
<!-- http://purl.obolibrary.org/obo/IAO_0000224 -->
<owl:NamedIndividual rdf:about="http://purl.obolibrary.org/obo/IAO_0000224">
<obo:IAO_0000115 xml:lang="en">Core is an instance of a grouping of terms from an ontology or ontologies. It is used by the ontology to identify main classes.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON: Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">PERSON: Melanie Courtot</obo:IAO_0000117>
<obo:IAO_0000231 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000226"/>
<rdfs:label xml:lang="en">obsolete_core</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:NamedIndividual>
<!-- http://purl.obolibrary.org/obo/IAO_0000226 -->
<owl:NamedIndividual rdf:about="http://purl.obolibrary.org/obo/IAO_0000226">
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/IAO_0000225"/>
<obo:IAO_0000111 xml:lang="en">placeholder removed</obo:IAO_0000111>
<rdfs:label xml:lang="en">placeholder removed</rdfs:label>
</owl:NamedIndividual>
<!-- http://purl.obolibrary.org/obo/IAO_0000227 -->
<owl:NamedIndividual rdf:about="http://purl.obolibrary.org/obo/IAO_0000227">
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/IAO_0000225"/>
<obo:IAO_0000111 xml:lang="en">terms merged</obo:IAO_0000111>
<obo:IAO_0000116 xml:lang="en">An editor note should explain what were the merged terms and the reason for the merge.</obo:IAO_0000116>
<rdfs:label xml:lang="en">terms merged</rdfs:label>
</owl:NamedIndividual>
<!-- http://purl.obolibrary.org/obo/IAO_0000228 -->
<owl:NamedIndividual rdf:about="http://purl.obolibrary.org/obo/IAO_0000228">
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/IAO_0000225"/>
<obo:IAO_0000111 xml:lang="en">term imported</obo:IAO_0000111>
<obo:IAO_0000116 xml:lang="en">This is to be used when the original term has been replaced by a term imported from an other ontology. An editor note should indicate what is the URI of the new term to use.</obo:IAO_0000116>
<rdfs:label xml:lang="en">term imported</rdfs:label>
</owl:NamedIndividual>
<!-- http://purl.obolibrary.org/obo/IAO_0000229 -->
<owl:NamedIndividual rdf:about="http://purl.obolibrary.org/obo/IAO_0000229">
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/IAO_0000225"/>
<obo:IAO_0000111 xml:lang="en">term split</obo:IAO_0000111>
<obo:IAO_0000116 xml:lang="en">This is to be used when a term has been split in two or more new terms. An editor note should indicate the reason for the split and indicate the URIs of the new terms created.</obo:IAO_0000116>
<rdfs:label xml:lang="en">term split</rdfs:label>
</owl:NamedIndividual>
<!-- http://purl.obolibrary.org/obo/IAO_0000410 -->
<owl:NamedIndividual rdf:about="http://purl.obolibrary.org/obo/IAO_0000410">
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/IAO_0000409"/>
<obo:IAO_0000111 xml:lang="en">universal</obo:IAO_0000111>
<obo:IAO_0000116 xml:lang="en">Hard to give a definition for. Intuitively a "natural kind" rather than a collection of any old things, which a class is able to be, formally. At the meta level, universals are defined as positives, are disjoint with their siblings, have single asserted parents.</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">A Formal Theory of Substances, Qualities, and Universals, http://ontology.buffalo.edu/bfo/SQU.pdf</obo:IAO_0000119>
<rdfs:label xml:lang="en">universal</rdfs:label>
</owl:NamedIndividual>
<!-- http://purl.obolibrary.org/obo/IAO_0000420 -->
<owl:NamedIndividual rdf:about="http://purl.obolibrary.org/obo/IAO_0000420">
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/IAO_0000409"/>
<obo:IAO_0000111 xml:lang="en">defined class</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">A defined class is a class that is defined by a set of logically necessary and sufficient conditions but is not a universal</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">"definitions", in some readings, always are given by necessary and sufficient conditions. So one must be careful (and this is difficult sometimes) to distinguish between defined classes and universal.</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">Alan Ruttenberg</obo:IAO_0000117>
<rdfs:label xml:lang="en">defined class</rdfs:label>
</owl:NamedIndividual>
<!-- http://purl.obolibrary.org/obo/IAO_0000421 -->
<owl:NamedIndividual rdf:about="http://purl.obolibrary.org/obo/IAO_0000421">
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/IAO_0000409"/>
<obo:IAO_0000111 xml:lang="en">named class expression</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">A named class expression is a logical expression that is given a name. The name can be used in place of the expression.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">named class expressions are used in order to have more concise logical definition but their extensions may not be interesting classes on their own. In languages such as OWL, with no provisions for macros, these show up as actuall classes. Tools may with to not show them as such, and to replace uses of the macros with their expansions</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">Alan Ruttenberg</obo:IAO_0000117>
<rdfs:label xml:lang="en">named class expression</rdfs:label>
</owl:NamedIndividual>
<!-- http://purl.obolibrary.org/obo/IAO_0000423 -->
<owl:NamedIndividual rdf:about="http://purl.obolibrary.org/obo/IAO_0000423">
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/IAO_0000078"/>
<obo:IAO_0000111 xml:lang="en">to be replaced with external ontology term</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">Terms with this status should eventually replaced with a term from another ontology.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">group:OBI</obo:IAO_0000119>
<rdfs:label xml:lang="en">to be replaced with external ontology term</rdfs:label>
</owl:NamedIndividual>
<!-- http://purl.obolibrary.org/obo/IAO_0000428 -->
<owl:NamedIndividual rdf:about="http://purl.obolibrary.org/obo/IAO_0000428">
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/IAO_0000078"/>
<obo:IAO_0000111 xml:lang="en">requires discussion</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">A term that is metadata complete, has been reviewed, and problems have been identified that require discussion before release. Such a term requires editor note(s) to identify the outstanding issues.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">group:OBI</obo:IAO_0000119>
<rdfs:label xml:lang="en">requires discussion</rdfs:label>
</owl:NamedIndividual>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// General axioms
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0002566"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
<rdfs:subClassOf>
<owl:Class>
<owl:unionOf rdf:parseType="Collection">
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000056"/>
<owl:someValuesFrom>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0002418"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/BFO_0000015"/>
</owl:Restriction>
</owl:someValuesFrom>
</owl:Restriction>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0002215"/>
<owl:someValuesFrom>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000056"/>
<owl:someValuesFrom>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0002418"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/BFO_0000015"/>
</owl:Restriction>
</owl:someValuesFrom>
</owl:Restriction>
</owl:someValuesFrom>
</owl:Restriction>
</owl:unionOf>
</owl:Class>
</rdfs:subClassOf>
</owl:Restriction>
<rdf:Description>
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#AllDifferent"/>
<owl:distinctMembers rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/IAO_0000120"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/IAO_0000121"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/IAO_0000122"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/IAO_0000123"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/IAO_0000124"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/IAO_0000125"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/IAO_0000423"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/IAO_0000428"/>
</owl:distinctMembers>
</rdf:Description>
<rdf:Description>
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#AllDifferent"/>
<owl:distinctMembers rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/IAO_0000226"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/IAO_0000227"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/IAO_0000228"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/IAO_0000229"/>
</owl:distinctMembers>
</rdf:Description>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Rules
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/ro.owl#z">
<rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#Variable"/>
</rdf:Description>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/ro.owl#y">
<rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#Variable"/>
</rdf:Description>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/ro.owl#x">
<rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#Variable"/>
</rdf:Description>
<rdf:Description rdf:about="urn:swrl#a1">
<rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#Variable"/>
</rdf:Description>
<rdf:Description rdf:about="urn:swrl#a2">
<rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#Variable"/>
</rdf:Description>
<rdf:Description rdf:about="urn:swrl#g1">
<rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#Variable"/>
</rdf:Description>
<rdf:Description rdf:about="urn:swrl#g2">
<rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#Variable"/>
</rdf:Description>
<rdf:Description rdf:about="urn:swrl#x">
<rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#Variable"/>
</rdf:Description>
<rdf:Description rdf:about="urn:swrl#y">
<rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#Variable"/>
</rdf:Description>
<rdf:Description rdf:about="urn:swrl#z">
<rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#Variable"/>
</rdf:Description>
<rdf:Description>
<swrla:isRuleEnabled rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</swrla:isRuleEnabled>
<rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MF(X)-directly_regulates->MF(Y)-enabled_by->GP(Z) => MF(Y)-has_input->GP(Y) e.g. if 'protein kinase activity'(X) directly_regulates 'protein binding activity (Y)and this is enabled by GP(Z) then X has_input Z</rdfs:comment>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">infer input from direct reg</rdfs:label>
<rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#Imp"/>
<swrl:body>
<rdf:Description>
<rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#AtomList"/>
<rdf:first>
<rdf:Description>
<rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#IndividualPropertyAtom"/>
<swrl:propertyPredicate rdf:resource="http://purl.obolibrary.org/obo/RO_0002327"/>
<swrl:argument1 rdf:resource="http://purl.obolibrary.org/obo/ro.owl#z"/>
<swrl:argument2 rdf:resource="http://purl.obolibrary.org/obo/ro.owl#y"/>
</rdf:Description>
</rdf:first>
<rdf:rest>
<rdf:Description>
<rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#AtomList"/>
<rdf:first>
<rdf:Description>
<rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#IndividualPropertyAtom"/>
<swrl:propertyPredicate rdf:resource="http://purl.obolibrary.org/obo/RO_0002578"/>
<swrl:argument1 rdf:resource="http://purl.obolibrary.org/obo/ro.owl#x"/>
<swrl:argument2 rdf:resource="http://purl.obolibrary.org/obo/ro.owl#y"/>
</rdf:Description>
</rdf:first>
<rdf:rest>
<rdf:Description>
<rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#AtomList"/>
<rdf:first>
<rdf:Description>
<rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#ClassAtom"/>
<swrl:classPredicate rdf:resource="http://purl.obolibrary.org/obo/GO_0003674"/>
<swrl:argument1 rdf:resource="http://purl.obolibrary.org/obo/ro.owl#x"/>
</rdf:Description>
</rdf:first>
<rdf:rest>
<rdf:Description>
<rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#AtomList"/>
<rdf:first>
<rdf:Description>
<rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#ClassAtom"/>
<swrl:classPredicate rdf:resource="http://purl.obolibrary.org/obo/GO_0003674"/>
<swrl:argument1 rdf:resource="http://purl.obolibrary.org/obo/ro.owl#y"/>
</rdf:Description>
</rdf:first>
<rdf:rest rdf:resource="http://www.w3.org/1999/02/22-rdf-syntax-ns#nil"/>
</rdf:Description>
</rdf:rest>
</rdf:Description>
</rdf:rest>
</rdf:Description>
</rdf:rest>
</rdf:Description>
</swrl:body>
<swrl:head>
<rdf:Description>
<rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#AtomList"/>
<rdf:first>
<rdf:Description>
<rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#IndividualPropertyAtom"/>
<swrl:propertyPredicate rdf:resource="http://purl.obolibrary.org/obo/RO_0002233"/>
<swrl:argument1 rdf:resource="http://purl.obolibrary.org/obo/ro.owl#x"/>
<swrl:argument2 rdf:resource="http://purl.obolibrary.org/obo/ro.owl#z"/>
</rdf:Description>
</rdf:first>
<rdf:rest rdf:resource="http://www.w3.org/1999/02/22-rdf-syntax-ns#nil"/>
</rdf:Description>
</swrl:head>
</rdf:Description>
<rdf:Description>
<rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#Imp"/>
<swrl:body>
<rdf:Description>
<rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#AtomList"/>
<rdf:first>
<rdf:Description>
<rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#IndividualPropertyAtom"/>
<swrl:propertyPredicate rdf:resource="http://purl.obolibrary.org/obo/RO_0002578"/>
<swrl:argument1 rdf:resource="urn:swrl#a1"/>
<swrl:argument2 rdf:resource="urn:swrl#a2"/>
</rdf:Description>
</rdf:first>
<rdf:rest>
<rdf:Description>
<rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#AtomList"/>
<rdf:first>
<rdf:Description>
<rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#ClassAtom"/>
<swrl:classPredicate rdf:resource="http://purl.obolibrary.org/obo/GO_0016301"/>
<swrl:argument1 rdf:resource="urn:swrl#a1"/>
</rdf:Description>
</rdf:first>
<rdf:rest>
<rdf:Description>
<rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#AtomList"/>
<rdf:first>
<rdf:Description>
<rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#IndividualPropertyAtom"/>
<swrl:propertyPredicate rdf:resource="http://purl.obolibrary.org/obo/RO_0002333"/>
<swrl:argument1 rdf:resource="urn:swrl#a1"/>
<swrl:argument2 rdf:resource="urn:swrl#g1"/>
</rdf:Description>
</rdf:first>
<rdf:rest>
<rdf:Description>
<rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#AtomList"/>
<rdf:first>
<rdf:Description>
<rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#IndividualPropertyAtom"/>
<swrl:propertyPredicate rdf:resource="http://purl.obolibrary.org/obo/RO_0002333"/>
<swrl:argument1 rdf:resource="urn:swrl#a2"/>
<swrl:argument2 rdf:resource="urn:swrl#g2"/>
</rdf:Description>
</rdf:first>
<rdf:rest rdf:resource="http://www.w3.org/1999/02/22-rdf-syntax-ns#nil"/>
</rdf:Description>
</rdf:rest>
</rdf:Description>
</rdf:rest>
</rdf:Description>
</rdf:rest>
</rdf:Description>
</swrl:body>
<swrl:head>
<rdf:Description>
<rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#AtomList"/>
<rdf:first>
<rdf:Description>
<rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#IndividualPropertyAtom"/>
<swrl:propertyPredicate rdf:resource="http://purl.obolibrary.org/obo/RO_0002447"/>
<swrl:argument1 rdf:resource="urn:swrl#g1"/>
<swrl:argument2 rdf:resource="urn:swrl#g2"/>
</rdf:Description>
</rdf:first>
<rdf:rest rdf:resource="http://www.w3.org/1999/02/22-rdf-syntax-ns#nil"/>
</rdf:Description>
</swrl:head>
</rdf:Description>
<rdf:Description>
<rdfs:label>'causally downstream of' and 'overlaps' should be disjoint properties (a SWRL rule is required because these are non-simple properties).</rdfs:label>
<rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#Imp"/>
<swrl:body>
<rdf:Description>
<rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#AtomList"/>
<rdf:first>
<rdf:Description>
<rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#IndividualPropertyAtom"/>
<swrl:propertyPredicate rdf:resource="http://purl.obolibrary.org/obo/RO_0002131"/>
<swrl:argument1 rdf:resource="urn:swrl#x"/>
<swrl:argument2 rdf:resource="urn:swrl#y"/>
</rdf:Description>
</rdf:first>
<rdf:rest>
<rdf:Description>
<rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#AtomList"/>
<rdf:first>
<rdf:Description>
<rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#IndividualPropertyAtom"/>
<swrl:propertyPredicate rdf:resource="http://purl.obolibrary.org/obo/RO_0002404"/>
<swrl:argument1 rdf:resource="urn:swrl#x"/>
<swrl:argument2 rdf:resource="urn:swrl#y"/>
</rdf:Description>
</rdf:first>
<rdf:rest rdf:resource="http://www.w3.org/1999/02/22-rdf-syntax-ns#nil"/>
</rdf:Description>
</rdf:rest>
</rdf:Description>
</swrl:body>
<swrl:head>
<rdf:Description>
<rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#AtomList"/>
<rdf:first>
<rdf:Description>
<rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#ClassAtom"/>
<swrl:classPredicate rdf:resource="http://www.w3.org/2002/07/owl#Nothing"/>
<swrl:argument1 rdf:resource="urn:swrl#y"/>
</rdf:Description>
</rdf:first>
<rdf:rest>
<rdf:Description>
<rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#AtomList"/>
<rdf:first>
<rdf:Description>
<rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#ClassAtom"/>
<swrl:classPredicate rdf:resource="http://www.w3.org/2002/07/owl#Nothing"/>
<swrl:argument1 rdf:resource="urn:swrl#x"/>
</rdf:Description>
</rdf:first>
<rdf:rest rdf:resource="http://www.w3.org/1999/02/22-rdf-syntax-ns#nil"/>
</rdf:Description>
</rdf:rest>
</rdf:Description>
</swrl:head>
</rdf:Description>
<rdf:Description>
<rdfs:label>'causally upstream of' and 'overlaps' should be disjoint properties (a SWRL rule is required because these are non-simple properties).</rdfs:label>
<rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#Imp"/>
<swrl:body>
<rdf:Description>
<rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#AtomList"/>
<rdf:first>
<rdf:Description>
<rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#IndividualPropertyAtom"/>
<swrl:propertyPredicate rdf:resource="http://purl.obolibrary.org/obo/RO_0002131"/>
<swrl:argument1 rdf:resource="urn:swrl#x"/>
<swrl:argument2 rdf:resource="urn:swrl#y"/>
</rdf:Description>
</rdf:first>
<rdf:rest>
<rdf:Description>
<rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#AtomList"/>
<rdf:first>
<rdf:Description>
<rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#IndividualPropertyAtom"/>
<swrl:propertyPredicate rdf:resource="http://purl.obolibrary.org/obo/RO_0002411"/>
<swrl:argument1 rdf:resource="urn:swrl#x"/>
<swrl:argument2 rdf:resource="urn:swrl#y"/>
</rdf:Description>
</rdf:first>
<rdf:rest rdf:resource="http://www.w3.org/1999/02/22-rdf-syntax-ns#nil"/>
</rdf:Description>
</rdf:rest>
</rdf:Description>
</swrl:body>
<swrl:head>
<rdf:Description>
<rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#AtomList"/>
<rdf:first>
<rdf:Description>
<rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#ClassAtom"/>
<swrl:classPredicate rdf:resource="http://www.w3.org/2002/07/owl#Nothing"/>
<swrl:argument1 rdf:resource="urn:swrl#y"/>
</rdf:Description>
</rdf:first>
<rdf:rest>
<rdf:Description>
<rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#AtomList"/>
<rdf:first>
<rdf:Description>
<rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#ClassAtom"/>
<swrl:classPredicate rdf:resource="http://www.w3.org/2002/07/owl#Nothing"/>
<swrl:argument1 rdf:resource="urn:swrl#x"/>
</rdf:Description>
</rdf:first>
<rdf:rest rdf:resource="http://www.w3.org/1999/02/22-rdf-syntax-ns#nil"/>
</rdf:Description>
</rdf:rest>
</rdf:Description>
</swrl:head>
</rdf:Description>
<rdf:Description>
<rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#Imp"/>
<swrl:body>
<rdf:Description>
<rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#AtomList"/>
<rdf:first>
<rdf:Description>
<rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#IndividualPropertyAtom"/>
<swrl:propertyPredicate rdf:resource="http://purl.obolibrary.org/obo/RO_0002212"/>
<swrl:argument1 rdf:resource="urn:swrl#x"/>
<swrl:argument2 rdf:resource="urn:swrl#y"/>
</rdf:Description>
</rdf:first>
<rdf:rest>
<rdf:Description>
<rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#AtomList"/>
<rdf:first>
<rdf:Description>
<rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#IndividualPropertyAtom"/>
<swrl:propertyPredicate rdf:resource="http://purl.obolibrary.org/obo/RO_0002213"/>
<swrl:argument1 rdf:resource="urn:swrl#y"/>
<swrl:argument2 rdf:resource="urn:swrl#z"/>
</rdf:Description>
</rdf:first>
<rdf:rest rdf:resource="http://www.w3.org/1999/02/22-rdf-syntax-ns#nil"/>
</rdf:Description>
</rdf:rest>
</rdf:Description>
</swrl:body>
<swrl:head>
<rdf:Description>
<rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#AtomList"/>
<rdf:first>
<rdf:Description>
<rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#IndividualPropertyAtom"/>
<swrl:propertyPredicate rdf:resource="http://purl.obolibrary.org/obo/RO_0002212"/>
<swrl:argument1 rdf:resource="urn:swrl#x"/>
<swrl:argument2 rdf:resource="urn:swrl#z"/>
</rdf:Description>
</rdf:first>
<rdf:rest rdf:resource="http://www.w3.org/1999/02/22-rdf-syntax-ns#nil"/>
</rdf:Description>
</swrl:head>
</rdf:Description>
<rdf:Description>
<rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#Imp"/>
<swrl:body>
<rdf:Description>
<rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#AtomList"/>
<rdf:first>
<rdf:Description>
<rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#IndividualPropertyAtom"/>
<swrl:propertyPredicate rdf:resource="http://purl.obolibrary.org/obo/RO_0002212"/>
<swrl:argument1 rdf:resource="urn:swrl#y"/>
<swrl:argument2 rdf:resource="urn:swrl#z"/>
</rdf:Description>
</rdf:first>
<rdf:rest>
<rdf:Description>
<rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#AtomList"/>
<rdf:first>
<rdf:Description>
<rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#IndividualPropertyAtom"/>
<swrl:propertyPredicate rdf:resource="http://purl.obolibrary.org/obo/RO_0002213"/>
<swrl:argument1 rdf:resource="urn:swrl#x"/>
<swrl:argument2 rdf:resource="urn:swrl#y"/>
</rdf:Description>
</rdf:first>
<rdf:rest rdf:resource="http://www.w3.org/1999/02/22-rdf-syntax-ns#nil"/>
</rdf:Description>
</rdf:rest>
</rdf:Description>
</swrl:body>
<swrl:head>
<rdf:Description>
<rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#AtomList"/>
<rdf:first>
<rdf:Description>
<rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#IndividualPropertyAtom"/>
<swrl:propertyPredicate rdf:resource="http://purl.obolibrary.org/obo/RO_0002212"/>
<swrl:argument1 rdf:resource="urn:swrl#x"/>
<swrl:argument2 rdf:resource="urn:swrl#z"/>
</rdf:Description>
</rdf:first>
<rdf:rest rdf:resource="http://www.w3.org/1999/02/22-rdf-syntax-ns#nil"/>
</rdf:Description>
</swrl:head>
</rdf:Description>
</rdf:RDF>
<!-- Generated by the OWL API (version 4.5.6) https://github.com/owlcs/owlapi -->