R_GatingHierarchy.cpp File Reference

#include "include/GatingHierarchy.hpp"
#include "include/GatingSet.hpp"
#include <stdexcept>
#include "include/gate.hpp"
#include "include/transformation.hpp"

Functions
void	plotGh (XPtr< GatingSet > gs, string sampleName, string output)
StringVec	getNodes (XPtr< GatingSet > gs, string sampleName, unsigned short order, bool fullPath, bool showHidden)
NODEID	getNodeID (XPtr< GatingSet > gs, string sampleName, string gatePath)
NODEID	getParent (XPtr< GatingSet > gs, string sampleName, string gatePath)
vector< NODEID >	getChildren (XPtr< GatingSet > gs, string sampleName, string gatePath, bool showHidden)
List	getPopStats (XPtr< GatingSet > gs, string sampleName, string gatePath)
List	getCompensation (XPtr< GatingSet > gs, string sampleName)
List	getTransformations (XPtr< GatingSet > gs, string sampleName, bool inverse)
void	computeGates (XPtr< GatingSet > gs, string sampleName, NumericVector gainsVec, float extend_val, float extend_to)
void	gating (XPtr< GatingSet > gs, NumericMatrix orig, string sampleName, NumericVector gainsVec, unsigned short nodeInd, bool recompute, float extend_val, bool ignore_case, bool computeTerminalBool, float timestep)
List	getGate (XPtr< GatingSet > gs, string sampleName, string gatePath)
vector< bool >	getIndices (XPtr< GatingSet > gs, string sampleName, string gatePath)
void	setIndices (XPtr< GatingSet > gs, string sampleName, int u, BoolVec ind)
bool	getGateFlag (XPtr< GatingSet > gs, string sampleName, string gatePath)
bool	getNegateFlag (XPtr< GatingSet > gs, string sampleName, string gatePath)
bool	getHiddenFlag (XPtr< GatingSet > gs, string sampleName, string gatePath)
vector< BOOL_GATE_OP >	boolFilter_R_to_C (List filter)
gate *	newGate (List filter)
NODEID	addGate (XPtr< GatingSet > gs, string sampleName, List filter, string gatePath, string popName)
void	boolGating (XPtr< GatingSet > gs, string sampleName, List filter, unsigned nodeID)
void	setGate (XPtr< GatingSet > gs, string sampleName, string gatePath, List filter)
void	removeNode (XPtr< GatingSet > gs, string sampleName, string gatePath)
void	setNodeName (XPtr< GatingSet > gs, string sampleName, string gatePath, string newNodeName)
void	setNodeFlag (XPtr< GatingSet > gs, string sampleName, string gatePath, bool hidden)