Summary
Basic Info
Genome info
Fasta file:
name
Total size:
genomeSize
GC %
:
GC
No.of sequences:
numSeq
Repeat info
Repeat occurrences:
totalRepFreq
Total repeat bases:
totalRepBases
Percent genome covered:
percentGenomeCovered
Repeat classes:
numRepClass
/501
Repeat occurrences per MB:
repDensityByFreq
Repeat bases per MB:
repDensityByBases
Most repeat unit occurrences
Sequence id
Start
End
Repeat class
Length
Strand
Repeat units
Actual repeat
Longest repeat occurrences
Sequence id
Start
End
Repeat class
Length
Strand
Repeat units
Actual repeat
Repeat Frequency
Sort Selection
Show
most
least
Repeats
Repeat Selection
Sort by frequency
Sort alphabetically
Repeat Distribution
Data type
Frequency
Bases covered
Group by length
On
Off
Repeat Selection
Sequence Length vs Frequency
Range
X-axis:
Repeat length
Repeat units
Min :
Max:
Repeat Selection