RBO is an ontology for the effects of radiation on biota in terrestrial and space environments.
Radiation Biology Ontology
2025-03-20
editor preferred label
editor preferred label
editor preferred term
editor preferred term
editor preferred term~editor preferred label
The concise, meaningful, and human-friendly name for a class or property preferred by the ontology developers. (US-English)
PERSON:Daniel Schober
GROUP:OBI:<http://purl.obolibrary.org/obo/obi>
editor preferred label
editor preferred label
editor preferred term
editor preferred term
editor preferred term~editor preferred label
example
example of usage
A phrase describing how a term should be used and/or a citation to a work which uses it. May also include other kinds of examples that facilitate immediate understanding, such as widely know prototypes or instances of a class, or cases where a relation is said to hold.
PERSON:Daniel Schober
GROUP:OBI:<http://purl.obolibrary.org/obo/obi>
IAO:0000112
uberon
example_of_usage
true
example_of_usage
example of usage
example of usage
definition
definition
textual definition
The official OBI definition, explaining the meaning of a class or property. Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions.
The official definition, explaining the meaning of a class or property. Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions.
2012-04-05:
Barry Smith
The official OBI definition, explaining the meaning of a class or property: 'Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions' is terrible.
Can you fix to something like:
A statement of necessary and sufficient conditions explaining the meaning of an expression referring to a class or property.
Alan Ruttenberg
Your proposed definition is a reasonable candidate, except that it is very common that necessary and sufficient conditions are not given. Mostly they are necessary, occasionally they are necessary and sufficient or just sufficient. Often they use terms that are not themselves defined and so they effectively can't be evaluated by those criteria.
On the specifics of the proposed definition:
We don't have definitions of 'meaning' or 'expression' or 'property'. For 'reference' in the intended sense I think we use the term 'denotation'. For 'expression', I think we you mean symbol, or identifier. For 'meaning' it differs for class and property. For class we want documentation that let's the intended reader determine whether an entity is instance of the class, or not. For property we want documentation that let's the intended reader determine, given a pair of potential relata, whether the assertion that the relation holds is true. The 'intended reader' part suggests that we also specify who, we expect, would be able to understand the definition, and also generalizes over human and computer reader to include textual and logical definition.
Personally, I am more comfortable weakening definition to documentation, with instructions as to what is desirable.
We also have the outstanding issue of how to aim different definitions to different audiences. A clinical audience reading chebi wants a different sort of definition documentation/definition from a chemistry trained audience, and similarly there is a need for a definition that is adequate for an ontologist to work with.
2012-04-05:
Barry Smith
The official OBI definition, explaining the meaning of a class or property: 'Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions' is terrible.
Can you fix to something like:
A statement of necessary and sufficient conditions explaining the meaning of an expression referring to a class or property.
Alan Ruttenberg
Your proposed definition is a reasonable candidate, except that it is very common that necessary and sufficient conditions are not given. Mostly they are necessary, occasionally they are necessary and sufficient or just sufficient. Often they use terms that are not themselves defined and so they effectively can't be evaluated by those criteria.
On the specifics of the proposed definition:
We don't have definitions of 'meaning' or 'expression' or 'property'. For 'reference' in the intended sense I think we use the term 'denotation'. For 'expression', I think we you mean symbol, or identifier. For 'meaning' it differs for class and property. For class we want documentation that let's the intended reader determine whether an entity is instance of the class, or not. For property we want documentation that let's the intended reader determine, given a pair of potential relata, whether the assertion that the relation holds is true. The 'intended reader' part suggests that we also specify who, we expect, would be able to understand the definition, and also generalizes over human and computer reader to include textual and logical definition.
Personally, I am more comfortable weakening definition to documentation, with instructions as to what is desirable.
We also have the outstanding issue of how to aim different definitions to different audiences. A clinical audience reading chebi wants a different sort of definition documentation/definition from a chemistry trained audience, and similarly there is a need for a definition that is adequate for an ontologist to work with.
PERSON:Daniel Schober
GROUP:OBI:<http://purl.obolibrary.org/obo/obi>
definition
definition
textual definition
editor note
An administrative note intended for its editor. It may not be included in the publication version of the ontology, so it should contain nothing necessary for end users to understand the ontology.
PERSON:Daniel Schober
GROUP:OBI:<http://purl.obfoundry.org/obo/obi>
GROUP:OBI:<http://purl.obofoundry.org/obo/obi>
IAO:0000116
uberon
editor_note
true
editor_note
editor note
editor note
term editor
Name of editor entering the term in the file. The term editor is a point of contact for information regarding the term. The term editor may be, but is not always, the author of the definition, which may have been worked upon by several people
20110707, MC: label update to term editor and definition modified accordingly. See https://github.com/information-artifact-ontology/IAO/issues/115.
PERSON:Daniel Schober
GROUP:OBI:<http://purl.obolibrary.org/obo/obi>
term editor
term editor
alternative label
alternative term
A label for a class or property that can be used to refer to the class or property instead of the preferred rdfs:label. Alternative labels should be used to indicate community- or context-specific labels, abbreviations, shorthand forms and the like.
An alternative name for a class or property which means the same thing as the preferred name (semantically equivalent)
OBO Operations committee
PERSON:Daniel Schober
GROUP:OBI:<http://purl.obolibrary.org/obo/obi>
Consider re-defing to: An alternative name for a class or property which can mean the same thing as the preferred name (semantically equivalent, narrow, broad or related).
alternative label
alternative term
alternative term
definition source
Formal citation, e.g. identifier in external database to indicate / attribute source(s) for the definition. Free text indicate / attribute source(s) for the definition. EXAMPLE: Author Name, URI, MeSH Term C04, PUBMED ID, Wiki uri on 31.01.2007
formal citation, e.g. identifier in external database to indicate / attribute source(s) for the definition. Free text indicate / attribute source(s) for the definition. EXAMPLE: Author Name, URI, MeSH Term C04, PUBMED ID, Wiki uri on 31.01.2007
PERSON:Daniel Schober
Discussion on obo-discuss mailing-list, see http://bit.ly/hgm99w
Discussion on obo-discuss mailing-list, see http://bit.ly/hgm99w
GROUP:OBI:<http://purl.obolibrary.org/obo/obi>
definition source
definition source
If R <- P o Q is a defining property chain axiom, then it also holds that R -> P o Q. Note that this cannot be expressed directly in OWL
is a defining property chain axiom
If R <- P o Q is a defining property chain axiom, then (1) R -> P o Q holds and (2) Q is either reflexive or locally reflexive. A corollary of this is that P SubPropertyOf R.
is a defining property chain axiom where second argument is reflexive
Examples of a Creator include a person, an organisation,
or a service. Typically, the name of a Creator should
be used to indicate the entity.
http://purl.org/dc/elements/1.1/creator
uberon
dc-creator
true
dc-creator
An entity primarily responsible for making the content
of the resource.
Creator
Creator
creator
Typically, Date will be associated with the creation or
availability of the resource. Recommended best practice
for encoding the date value is defined in a profile of
ISO 8601 [W3CDTF] and follows the YYYY-MM-DD format.
A date associated with an event in the life cycle of the
resource.
Date
Date
Description may include but is not limited to: an abstract,
table of contents, reference to a graphical representation
of content or a free-text account of the content.
http://purl.org/dc/elements/1.1/description
uberon
dc-description
true
dc-description
An account of the content of the resource.
Description
Description
description
Typically, a Title will be a name by which the resource is
formally known.
http://purl.org/dc/elements/1.1/title
uberon
dc-title
true
dc-title
A name given to the resource.
Title
Title
title
Mark Miller
2018-05-11T13:47:29Z
http://purl.org/dc/terms/license
uberon
dcterms-license
true
dcterms-license
license
created by
created_by
creation date
has_alternative_id
An alternative label for a class or property which has a more general meaning than the preferred name/primary label.
https://github.com/information-artifact-ontology/ontology-metadata/issues/18
has broad synonym
has_broad_synonym
https://github.com/information-artifact-ontology/ontology-metadata/issues/18
disease characteristic (MONDO:0021125) has cross-reference (http://www.geneontology.org/formats/oboInOwl#hasDbXref) "NCIT:C41009"^^xsd:string
An annotation property that links an ontology entity or a statement to a prefixed identifier or URI.
2024-03-18
database_cross_reference
has cross-reference
An alternative label for a class or property which has the exact same meaning than the preferred name/primary label.
An alternative label for a given entity such as a commonly used abbreviation or synonym.
https://github.com/information-artifact-ontology/ontology-metadata/issues/20
has exact synonym
has_exact_synonym
https://github.com/information-artifact-ontology/ontology-metadata/issues/20
has_obo_namespace
has_related_synonym
in_subset
label
label
http://www.w3.org/2000/01/rdf-schema#seeAlso
spatial
uberon
seeAlso
true
seeAlso
see also
is part of
my brain is part of my body (continuant parthood, two material entities)
my stomach cavity is part of my stomach (continuant parthood, immaterial entity is part of material entity)
this day is part of this year (occurrent parthood)
For continuants: C part_of C' if and only if: given any c that instantiates C at a time t, there is some c' such that c' instantiates C' at time t, and c *part_of* c' at t. For processes: P part_of P' if and only if: given any p that instantiates P at a time t, there is some p' such that p' instantiates P' at time t, and p *part_of* p' at t. (Here *part_of* is the instance-level part-relation.)
a core relation that holds between a part and its whole
Everything is part of itself. Any part of any part of a thing is itself part of that thing. Two distinct things cannot be part of each other.
Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/
Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime
Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.)
A continuant cannot be part of an occurrent: use 'participates in'. An occurrent cannot be part of a continuant: use 'has participant'. A material entity cannot be part of an immaterial entity: use 'has location'. A specifically dependent continuant cannot be part of an independent continuant: use 'inheres in'. An independent continuant cannot be part of a specifically dependent continuant: use 'bearer of'.
part_of
http://www.ebi.ac.uk/efo/part_of
BFO:0000050
part of
external
quality
spatial
uberon
part_of
part_of
EFO_0000822
part of
part of
part_of
http://www.obofoundry.org/ro/#OBO_REL:part_of
https://wiki.geneontology.org/Part_of
has part
my body has part my brain (continuant parthood, two material entities)
my stomach has part my stomach cavity (continuant parthood, material entity has part immaterial entity)
this year has part this day (occurrent parthood)
a core relation that holds between a whole and its part
Everything has itself as a part. Any part of any part of a thing is itself part of that thing. Two distinct things cannot have each other as a part.
Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/
Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime
Parthood requires the part and the whole to have compatible classes: only an occurrent have an occurrent as part; only a process can have a process as part; only a continuant can have a continuant as part; only an independent continuant can have an independent continuant as part; only a specifically dependent continuant can have a specifically dependent continuant as part; only a generically dependent continuant can have a generically dependent continuant as part. (This list is not exhaustive.)
A continuant cannot have an occurrent as part: use 'participates in'. An occurrent cannot have a continuant as part: use 'has participant'. An immaterial entity cannot have a material entity as part: use 'location of'. An independent continuant cannot have a specifically dependent continuant as part: use 'bearer of'. A specifically dependent continuant cannot have an independent continuant as part: use 'inheres in'.
has_part
http://www.ebi.ac.uk/efo/has_part
BFO:0000051
chebi_ontology
external
quality
spatial
uberon
has_part
false
has_part
has part
has part
has_part
realized in
this disease is realized in this disease course
this fragility is realized in this shattering
this investigator role is realized in this investigation
is realized by
realized_in
[copied from inverse property 'realizes'] to say that b realizes c at t is to assert that there is some material entity d & b is a process which has participant d at t & c is a disposition or role of which d is bearer_of at t& the type instantiated by b is correlated with the type instantiated by c. (axiom label in BFO2 Reference: [059-003])
Paraphrase of elucidation: a relation between a realizable entity and a process, where there is some material entity that is bearer of the realizable entity and participates in the process, and the realizable entity comes to be realized in the course of the process
realized in
realizes
this disease course realizes this disease
this investigation realizes this investigator role
this shattering realizes this fragility
Paraphrase of elucidation: a relation between a process and a realizable entity, where there is some material entity that is bearer of the realizable entity and participates in the process, and the realizable entity comes to be realized in the course of the process
to say that b realizes c at t is to assert that there is some material entity d & b is a process which has participant d at t & c is a disposition or role of which d is bearer_of at t& the type instantiated by b is correlated with the type instantiated by c. (axiom label in BFO2 Reference: [059-003])
Paraphrase of elucidation: a relation between a process and a realizable entity, where there is some material entity that is bearer of the realizable entity and participates in the process, and the realizable entity comes to be realized in the course of the process
realizes
BFO:0000057
has participant
preceded by
x is preceded by y if and only if the time point at which y ends is before or equivalent to the time point at which x starts. Formally: x preceded by y iff ω(y) <= α(x), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point.
An example is: translation preceded_by transcription; aging preceded_by development (not however death preceded_by aging). Where derives_from links classes of continuants, preceded_by links classes of processes. Clearly, however, these two relations are not independent of each other. Thus if cells of type C1 derive_from cells of type C, then any cell division involving an instance of C1 in a given lineage is preceded_by cellular processes involving an instance of C. The assertion P preceded_by P1 tells us something about Ps in general: that is, it tells us something about what happened earlier, given what we know about what happened later. Thus it does not provide information pointing in the opposite direction, concerning instances of P1 in general; that is, that each is such as to be succeeded by some instance of P. Note that an assertion to the effect that P preceded_by P1 is rather weak; it tells us little about the relations between the underlying instances in virtue of which the preceded_by relation obtains. Typically we will be interested in stronger relations, for example in the relation immediately_preceded_by, or in relations which combine preceded_by with a condition to the effect that the corresponding instances of P and P1 share participants, or that their participants are connected by relations of derivation, or (as a first step along the road to a treatment of causality) that the one process in some way affects (for example, initiates or regulates) the other.
is preceded by
preceded_by
http://www.obofoundry.org/ro/#OBO_REL:preceded_by
http://www.obofoundry.org/ro/#OBO_REL:preceded_by
BFO:0000062
external
uberon
preceded_by
preceded_by
preceded by
preceded by
precedes
x precedes y if and only if the time point at which x ends is before or equivalent to the time point at which y starts. Formally: x precedes y iff ω(x) <= α(y), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point.
BFO:0000063
external
uberon
precedes
precedes
precedes
precedes
occurs in
b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t
occurs_in
unfolds in
unfolds_in
Paraphrase of definition: a relation between a process and an independent continuant, in which the process takes place entirely within the independent continuant
occurs in
https://wiki.geneontology.org/Occurs_in
site of
[copied from inverse property 'occurs in'] b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t
BFO:0000067
uberon
contains_process
contains_process
Paraphrase of definition: a relation between an independent continuant and a process, in which the process takes place entirely within the independent continuant
contains process
contains process
x anterior to y iff x is further along the antero-posterior axis than y, towards the head. An antero-posterior axis is an axis that extends through an organism from head end to opposite end of body or tail.
BSPO:0000096
rostral_to
spatial
uberon
anterior_to
anterior_to
anterior to
x anterior to y iff x is further along the antero-posterior axis than y, towards the head. An antero-posterior axis is an axis that extends through an organism from head end to opposite end of body or tail.
BSPO:cjm
x dorsal to y iff x is further along the dorso-ventral axis than y, towards the back. A dorso-ventral axis is an axis that extends through an organism from back (e.g. spinal column) to front (e.g. belly).
BSPO:0000098
spatial
uberon
dorsal_to
dorsal_to
dorsal to
x dorsal to y iff x is further along the dorso-ventral axis than y, towards the back. A dorso-ventral axis is an axis that extends through an organism from back (e.g. spinal column) to front (e.g. belly).
BSPO:cjm
x posterior to y iff x is further along the antero-posterior axis than y, towards the body/tail. An antero-posterior axis is an axis that extends through an organism from head end to opposite end of body or tail.
BSPO:0000099
caudal to
spatial
uberon
posterior_to
posterior_to
posterior to
x posterior to y iff x is further along the antero-posterior axis than y, towards the body/tail. An antero-posterior axis is an axis that extends through an organism from head end to opposite end of body or tail.
BSPO:cjm
caudal to
x ventral to y iff x is further along the dorso-ventral axis than y, towards the front. A dorso-ventral axis is an axis that extends through an organism from back (e.g. spinal column) to front (e.g. belly).
BSPO:0000102
spatial
uberon
ventral_to
ventral_to
ventral to
x ventral to y iff x is further along the dorso-ventral axis than y, towards the front. A dorso-ventral axis is an axis that extends through an organism from back (e.g. spinal column) to front (e.g. belly).
BSPO:cjm
Further away from the surface of the organism. Thus, the muscular layer is deep to the skin, but superficial to the intestines.
BSPO:0000107
spatial
uberon
deep_to
deep_to
deep to
Further away from the surface of the organism. Thus, the muscular layer is deep to the skin, but superficial to the intestines.
BSPO:cjm
Near the outer surface of the organism. Thus, skin is superficial to the muscle layer.
BSPO:0000108
spatial
uberon
superficial_to
superficial_to
superficial to
Near the outer surface of the organism. Thus, skin is superficial to the muscle layer.
BSPO:cjm
X in left side of Y <=> if Y is subdivided into two left and right portions, X is part of the left portion.
BSPO:0000120
NCIT:C25229
spatial
uberon
in_left_side_of
in_left_side_of
in left side of
https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern
X in left side of Y <=> if Y is subdivided into two left and right portions, X is part of the left portion.
BSPO:PATO_mtg_2009
X in right side of Y <=> if Y is subdivided into two left and right portions, X is part of the right portion.
BSPO:0000121
NCIT:C25228
spatial
uberon
in_right_side_of
in_right_side_of
in right side of
https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern
X in right side of Y <=> if Y is subdivided into two left and right portions, X is part of the right portion.
BSPO:PATO_mtg_2009
X posterior side of Y <=> if Y is subdivided into two anterior and posterior portions, X is part of the posterior portion.
BSPO:0000122
spatial
uberon
in_posterior_side_of
in_posterior_side_of
in posterior side of
X posterior side of Y <=> if Y is subdivided into two anterior and posterior portions, X is part of the posterior portion.
BSPO:PATO_mtg_2009
X anterior side of Y <=> if Y is subdivided into two anterior and posterior portions, X is part of the anterior portion.
BSPO:0000123
spatial
uberon
in_anterior_side_of
in_anterior_side_of
in anterior side of
X anterior side of Y <=> if Y is subdivided into two anterior and posterior portions, X is part of the anterior portion.
BSPO:PATO_mtg_2009
x in proximal side of y <=> if y is subdivided into two proximal and distal portions, y is part of the proximal portion.
BSPO:0000124
spatial
uberon
in_proximal_side_of
in_proximal_side_of
in proximal side of
x in proximal side of y <=> if y is subdivided into two proximal and distal portions, y is part of the proximal portion.
BSPO:PATO_mtg_2009
x in distal side of y <=> if y is subdivided into two proximal and distal portions, y is part of the distal portion.
BSPO:0000125
spatial
uberon
in_distal_side_of
in_distal_side_of
in distal side of
x in distal side of y <=> if y is subdivided into two proximal and distal portions, y is part of the distal portion.
BSPO:PATO_mtg_2009
X in lateral side of Y <=> if X is in left side of Y or X is in right side of Y. X is often, but not always a paired structure
BSPO:0000126
spatial
uberon
in_lateral_side_of
in_lateral_side_of
in lateral side of
https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern
X in lateral side of Y <=> if X is in left side of Y or X is in right side of Y. X is often, but not always a paired structure
UBERON:cjm
X proximalmost part of Y <=> X is in proximal side of Y and X is adjacent to the proximal boundary of Y
BSPO:0001106
spatial
uberon
proximalmost_part_of
proximalmost_part_of
proximalmost part of
X proximalmost part of Y <=> X is in proximal side of Y and X is adjacent to the proximal boundary of Y
https://orcid.org/0000-0002-6601-2165
x immediately deep to y iff x deep_to y and x is contiguous with y.
BSPO:0001107
spatial
uberon
immediately_deep_to
immediately_deep_to
immediately deep to
x immediately deep to y iff x deep_to y and x is contiguous with y.
BSPO:curators
X distalmost part of Y <=> X is in distal side of Y and X is adjacent to the distal boundary of Y
BSPO:0001108
spatial
uberon
distalmost_part_of
distalmost_part_of
distalmost part of
X distalmost part of Y <=> X is in distal side of Y and X is adjacent to the distal boundary of Y
https://orcid.org/0000-0002-6601-2165
X intersects median plane of iff X crosses the midine plane of Y.
BSPO:0005001
spatial
uberon
intersects_midsagittal_plane_of
intersects_midsagittal_plane_of
intersects midsagittal plane of
x immediately superficial to y iff x superficial to y and x is contiguous with y.
BSPO:0015014
spatial
uberon
immediately_superficial_to
immediately_superficial_to
immediately superficial to
x immediately superficial to y iff x superficial to y and x is contiguous with y.
BSPO:curators
X dorsal side of Y <=> if Y is subdivided into two dorsal and ventral portions, X is part of the dorsal portion.
BSPO:0015101
spatial
uberon
in_dorsal_side_of
in_dorsal_side_of
in dorsal side of
X dorsal side of Y <=> if Y is subdivided into two dorsal and ventral portions, X is part of the dorsal portion.
BSPO:cjm
lacks_part
lacks_plasma_membrane_part
A duck swimming in a pond is partially surrounded by air and partially surrounded by water.
x partially_surrounded_by y if and only if (1) x is adjacent to y and for the region r that is adjacent to x, r partially overlaps y (2) the shared boundary between x and y occupies a non-trivial proportion of the outermost boundary of x
Definition modified from 'surrounded by'.
partially_surrounded_by
A relation between two distinct material entities, the new entity and the old entity, in which the new entity begins to exist through the separation or transformation of a part of the old entity, and the new entity inherits a significant portion of the matter belonging to that part of the old entity.
derives from part of
A has part relationship between a whole and a part, where the number of parts present in the whole is higher than in comparable entities.
This relation is present in ENVO to support compositional classes such as "X-enriched soil". These will later be formalized, and a different relation from RO may be chosen.
has increased levels of
Afforestation results in the expansion of a forest.
A process, p, results in the expansion of a material entity, m, if the spatial extent of m is increased as a result of participating in p.
results in expansion of
A relation between a process and a disposition such that the existence of the disposition is caused by the execution of the process.
Consider ceding to RO
2018-11-03T20:58:13Z
generates
GOREL:0002003
external
results_in_distribution_of
results_in_distribution_of
results in distribution of
results_in_distribution_of
GOREL:0002004
external
results_in_fission_of
results_in_fission_of
results in fission of
results_in_fission_of
has measurement unit label
has measurement unit label
is about
A (currently) primitive relation that relates an information artifact to an entity.
is about
is_supported_by_data
The relation between the conclusion "Gene tpbA is involved in EPS production" and the data items produced using two sets of organisms, one being a tpbA knockout, the other being tpbA wildtype tested in polysacharide production assays and analyzed using an ANOVA.
The relation between a data item and a conclusion where the conclusion is the output of a data interpreting process and the data item is used as an input to that process
OBI
OBI
Philly 2011 workshop
is_supported_by_data
has specified input
see is_input_of example_of_usage
The inverse property of is specified input of
The inverse property of is specified input of
8/17/09: specified inputs of one process are not necessarily specified inputs of a larger process that it is part of. This is in contrast to how 'has participant' works.
PERSON: Alan Ruttenberg
PERSON: Bjoern Peters
PERSON: Larry Hunter
PERSON: Melanie Coutot
has specified input
is specified input of
some Autologous EBV(Epstein-Barr virus)-transformed B-LCL (B lymphocyte cell line) is_input_for instance of Chromum Release Assay described at https://wiki.cbil.upenn.edu/obiwiki/index.php/Chromium_Release_assay
A relation between a planned process and a continuant participating in that process that is not created during the process. The presence of the continuant during the process is explicitly specified in the plan specification which the process realizes the concretization of.
Alan Ruttenberg
PERSON:Bjoern Peters
is specified input of
has specified output
The inverse property of is specified output of
The inverse property of is specified output of
PERSON: Alan Ruttenberg
PERSON: Bjoern Peters
PERSON: Larry Hunter
PERSON: Melanie Courtot
OBI:0000299
has specified output
has_output
has_specified_output
is specified output of
A relation between a planned process and a continuant participating in that process. The presence of the continuant at the end of the process is explicitly specified in the objective specification which the process realizes the concretization of.
Alan Ruttenberg
PERSON:Bjoern Peters
is specified output of
achieves_planned_objective
A cell sorting process achieves the objective specification 'material separation objective'
This relation obtains between a planned process and a objective specification when the criteria specified in the objective specification are met at the end of the planned process.
BP, AR, PPPB branch
PPPB branch derived
modified according to email thread from 1/23/09 in accordince with DT and PPPB branch
achieves_planned_objective
objective_achieved_by
This relation obtains between an objective specification and a planned process when the criteria specified in the objective specification are met at the end of the planned process.
OBI
OBI
objective_achieved_by
has value specification
A relation between an information content entity and a value specification that specifies its value.
PERSON: James A. Overton
OBI
has value specification
inheres in
this fragility inheres in this vase
this fragility is a characteristic of this vase
this red color inheres in this apple
this red color is a characteristic of this apple
a relation between a specifically dependent continuant (the characteristic) and any other entity (the bearer), in which the characteristic depends on the bearer for its existence.
a relation between a specifically dependent continuant (the dependent) and an independent continuant (the bearer), in which the dependent specifically depends on the bearer for its existence
A dependent inheres in its bearer at all times for which the dependent exists.
inheres_in
http://www.ebi.ac.uk/efo/EFO_0000829
RO:0000052
inheres_in
inheres_in
Note that this relation was previously called "inheres in", but was changed to be called "characteristic of" because BFO2 uses "inheres in" in a more restricted fashion. This relation differs from BFO2:inheres_in in two respects: (1) it does not impose a range constraint, and thus it allows qualities of processes, as well as of information entities, whereas BFO2 restricts inheres_in to only apply to independent continuants (2) it is declared functional, i.e. something can only be a characteristic of one thing.
characteristic of
inheres in
inheres in
inheres_in
bearer of
this apple is bearer of this red color
this vase is bearer of this fragility
Inverse of characteristic_of
a relation between an independent continuant (the bearer) and a specifically dependent continuant (the dependent), in which the dependent specifically depends on the bearer for its existence
A bearer can have many dependents, and its dependents can exist for different periods of time, but none of its dependents can exist when the bearer does not exist.
bearer_of
is bearer of
RO:0000053
external
bearer_of
bearer_of
bearer of
bearer of
has characteristic
participates in
this blood clot participates in this blood coagulation
this input material (or this output material) participates in this process
this investigator participates in this investigation
Participates in is a primitive instance-level relation between a continuant and a process in which it participates. For example a scanner participates in a scanning process at some specific time.
a relation between a continuant and a process, in which the continuant is somehow involved in the process
participates_in
RO:0000056
external
uberon
participates_in
participates_in
participates in
participates in
participates_in
has participant
this blood coagulation has participant this blood clot
this investigation has participant this investigator
this process has participant this input material (or this output material)
Has_participant is a primitive instance-level relation between a process, a continuant, and a time at which the A continuant participates in some way in the process. The relation obtains, for example, when this particular process of oxygen exchange across this particular alveolar membrane has_participant this particular sample of hemoglobin at this particular time.
a relation between a process and a continuant, in which the continuant is somehow involved in the process
Has_participant is a primitive instance-level relation between a process, a continuant, and a time at which the continuant participates in some way in the process. The relation obtains, for example, when this particular process of oxygen exchange across this particular alveolar membrane has_participant this particular sample of hemoglobin at this particular time.
has_participant
http://www.obofoundry.org/ro/#OBO_REL:has_participant
http://www.obofoundry.org/ro/#OBO_REL:has_participant
RO:0000057
external
has_participant
has_participant
has participant
has participant
has_participant
A journal article is an information artifact that inheres in some number of printed journals. For each copy of the printed journal there is some quality that carries the journal article, such as a pattern of ink. The journal article (a generically dependent continuant) is concretized as the quality (a specifically dependent continuant), and both depend on that copy of the printed journal (an independent continuant).
An investigator reads a protocol and forms a plan to carry out an assay. The plan is a realizable entity (a specifically dependent continuant) that concretizes the protocol (a generically dependent continuant), and both depend on the investigator (an independent continuant). The plan is then realized by the assay (a process).
A relationship between a generically dependent continuant and a specifically dependent continuant, in which the generically dependent continuant depends on some independent continuant in virtue of the fact that the specifically dependent continuant also depends on that same independent continuant. A generically dependent continuant may be concretized as multiple specifically dependent continuants.
is concretized as
A journal article is an information artifact that inheres in some number of printed journals. For each copy of the printed journal there is some quality that carries the journal article, such as a pattern of ink. The quality (a specifically dependent continuant) concretizes the journal article (a generically dependent continuant), and both depend on that copy of the printed journal (an independent continuant).
An investigator reads a protocol and forms a plan to carry out an assay. The plan is a realizable entity (a specifically dependent continuant) that concretizes the protocol (a generically dependent continuant), and both depend on the investigator (an independent continuant). The plan is then realized by the assay (a process).
A relationship between a specifically dependent continuant and a generically dependent continuant, in which the generically dependent continuant depends on some independent continuant in virtue of the fact that the specifically dependent continuant also depends on that same independent continuant. Multiple specifically dependent continuants can concretize the same generically dependent continuant.
concretizes
this catalysis function is a function of this enzyme
a relation between a function and an independent continuant (the bearer), in which the function specifically depends on the bearer for its existence
A function inheres in its bearer at all times for which the function exists, however the function need not be realized at all the times that the function exists.
function_of
is function of
This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020.
function of
this red color is a quality of this apple
a relation between a quality and an independent continuant (the bearer), in which the quality specifically depends on the bearer for its existence
A quality inheres in its bearer at all times for which the quality exists.
is quality of
quality_of
This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020.
quality of
this investigator role is a role of this person
a relation between a role and an independent continuant (the bearer), in which the role specifically depends on the bearer for its existence
A role inheres in its bearer at all times for which the role exists, however the role need not be realized at all the times that the role exists.
is role of
role_of
This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020.
role of
this enzyme has function this catalysis function (more colloquially: this enzyme has this catalysis function)
a relation between an independent continuant (the bearer) and a function, in which the function specifically depends on the bearer for its existence
A bearer can have many functions, and its functions can exist for different periods of time, but none of its functions can exist when the bearer does not exist. A function need not be realized at all the times that the function exists.
has_function
has function
this apple has quality this red color
a relation between an independent continuant (the bearer) and a quality, in which the quality specifically depends on the bearer for its existence
A bearer can have many qualities, and its qualities can exist for different periods of time, but none of its qualities can exist when the bearer does not exist.
has_quality
http://www.ebi.ac.uk/efo/has_quality
RO:0000086
uberon
has_quality
has_quality
has quality
has quality
has_quality
this person has role this investigator role (more colloquially: this person has this role of investigator)
a relation between an independent continuant (the bearer) and a role, in which the role specifically depends on the bearer for its existence
A bearer can have many roles, and its roles can exist for different periods of time, but none of its roles can exist when the bearer does not exist. A role need not be realized at all the times that the role exists.
has_role
RO:0000087
chebi_ontology
has_role
false
false
has_role
has role
has role
a relation between an independent continuant (the bearer) and a disposition, in which the disposition specifically depends on the bearer for its existence
has disposition
inverse of has disposition
This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020.
disposition of
this cell derives from this parent cell (cell division)
this nucleus derives from this parent nucleus (nuclear division)
a relation between two distinct material entities, the new entity and the old entity, in which the new entity begins to exist when the old entity ceases to exist, and the new entity inherits the significant portion of the matter of the old entity
This is a very general relation. More specific relations are preferred when applicable, such as 'directly develops from'.
derives_from
This relation is taken from the RO2005 version of RO. It may be obsoleted and replaced by relations with different definitions. See also the 'develops from' family of relations.
derives from
this parent cell derives into this cell (cell division)
this parent nucleus derives into this nucleus (nuclear division)
a relation between two distinct material entities, the old entity and the new entity, in which the new entity begins to exist when the old entity ceases to exist, and the new entity inherits the significant portion of the matter of the old entity
This is a very general relation. More specific relations are preferred when applicable, such as 'directly develops into'. To avoid making statements about a future that may not come to pass, it is often better to use the backward-looking 'derives from' rather than the forward-looking 'derives into'.
derives_into
derives into
is location of
my head is the location of my brain
this cage is the location of this rat
a relation between two independent continuants, the location and the target, in which the target is entirely within the location
Most location relations will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/
location_of
RO:0001015
uberon
location_of
location_of
location of
location of
located in
my brain is located in my head
this rat is located in this cage
a relation between two independent continuants, the target and the location, in which the target is entirely within the location
Location as a relation between instances: The primitive instance-level relation c located_in r at t reflects the fact that each continuant is at any given time associated with exactly one spatial region, namely its exact location. Following we can use this relation to define a further instance-level location relation - not between a continuant and the region which it exactly occupies, but rather between one continuant and another. c is located in c1, in this sense, whenever the spatial region occupied by c is part_of the spatial region occupied by c1. Note that this relation comprehends both the relation of exact location between one continuant and another which obtains when r and r1 are identical (for example, when a portion of fluid exactly fills a cavity), as well as those sorts of inexact location relations which obtain, for example, between brain and head or between ovum and uterus
Most location relations will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/
located_in
http://www.obofoundry.org/ro/#OBO_REL:located_in
RO:0001025
uberon
located_in
located_in
located in
located in
https://wiki.geneontology.org/Located_in
This is redundant with the more specific 'independent and not spatial region' constraint. We leave in the redundant axiom for use with reasoners that do not use negation.
This is redundant with the more specific 'independent and not spatial region' constraint. We leave in the redundant axiom for use with reasoners that do not use negation.
the surface of my skin is a 2D boundary of my body
a relation between a 2D immaterial entity (the boundary) and a material entity, in which the boundary delimits the material entity
A 2D boundary may have holes and gaps, but it must be a single connected entity, not an aggregate of several disconnected parts.
Although the boundary is two-dimensional, it exists in three-dimensional space and thus has a 3D shape.
2D boundary of
my body has 2D boundary the surface of my skin
a relation between a material entity and a 2D immaterial entity (the boundary), in which the boundary delimits the material entity
A 2D boundary may have holes and gaps, but it must be a single connected entity, not an aggregate of several disconnected parts.
Although the boundary is two-dimensional, it exists in three-dimensional space and thus has a 3D shape.
RO:0002002
uberon
has_boundary
has_boundary
has 2D boundary
has 2D boundary
RO:0002005
uberon
innervated_by
innervated_by
innervated_by
innervated_by
X outer_layer_of Y iff:
. X :continuant that bearer_of some PATO:laminar
. X part_of Y
. exists Z :surface
. X has_boundary Z
. Z boundary_of Y
has_boundary: http://purl.obolibrary.org/obo/RO_0002002
boundary_of: http://purl.obolibrary.org/obo/RO_0002000
RO:0002007
uberon
bounding_layer_of
bounding_layer_of
A relationship that applies between a continuant and its outer, bounding layer. Examples include the relationship between a multicellular organism and its integument, between an animal cell and its plasma membrane, and between a membrane bound organelle and its outer/bounding membrane.
bounding layer of
bounding layer of
A 'has regulatory component activity' B if A and B are GO molecular functions (GO_0003674), A has_component B and A is regulated by B.
2017-05-24T09:30:46Z
has regulatory component activity
A relationship that holds between a GO molecular function and a component of that molecular function that negatively regulates the activity of the whole. More formally, A 'has regulatory component activity' B iff :A and B are GO molecular functions (GO_0003674), A has_component B and A is negatively regulated by B.
2017-05-24T09:31:01Z
By convention GO molecular functions are classified by their effector function. Internal regulatory functions are treated as components. For example, NMDA glutmate receptor activity is a cation channel activity with positive regulatory component 'glutamate binding' and negative regulatory components including 'zinc binding' and 'magnesium binding'.
has negative regulatory component activity
A relationship that holds between a GO molecular function and a component of that molecular function that positively regulates the activity of the whole. More formally, A 'has regulatory component activity' B iff :A and B are GO molecular functions (GO_0003674), A has_component B and A is positively regulated by B.
2017-05-24T09:31:17Z
By convention GO molecular functions are classified by their effector function and internal regulatory functions are treated as components. So, for example calmodulin has a protein binding activity that has positive regulatory component activity calcium binding activity. Receptor tyrosine kinase activity is a tyrosine kinase activity that has positive regulatory component 'ligand binding'.
has positive regulatory component activity
2017-05-24T09:44:33Z
A 'has component activity' B if A is A and B are molecular functions (GO_0003674) and A has_component B.
has component activity
w 'has process component' p if p and w are processes, w 'has part' p and w is such that it can be directly disassembled into into n parts p, p2, p3, ..., pn, where these parts are of similar type.
2017-05-24T09:49:21Z
has component process
A relationship between a process and a barrier, where the process occurs in a region spanning the barrier. For cellular processes the barrier is typically a membrane. Examples include transport across a membrane and membrane depolarization.
2017-07-20T17:19:37Z
occurs across
dos
2017-09-17T13:52:24Z
Process(P2) is directly regulated by process(P1) iff: P1 regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding regulates the kinase activity (P2) of protein B then P1 directly regulates P2.
directly regulated by
Process(P2) is directly regulated by process(P1) iff: P1 regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding regulates the kinase activity (P2) of protein B then P1 directly regulates P2.
Process(P2) is directly regulated by process(P1) iff: P1 regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding regulates the kinase activity (P2) of protein B then P1 directly regulates P2.
GOC:dos
Process(P2) is directly negatively regulated by process(P1) iff: P1 negatively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding negatively regulates the kinase activity (P2) of protein B then P2 directly negatively regulated by P1.
2017-09-17T13:52:38Z
directly negatively regulated by
Process(P2) is directly negatively regulated by process(P1) iff: P1 negatively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding negatively regulates the kinase activity (P2) of protein B then P2 directly negatively regulated by P1.
Process(P2) is directly postively regulated by process(P1) iff: P1 positively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding positively regulates the kinase activity (P2) of protein B then P2 is directly postively regulated by P1.
2017-09-17T13:52:47Z
directly positively regulated by
Process(P2) is directly postively regulated by process(P1) iff: P1 positively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding positively regulates the kinase activity (P2) of protein B then P2 is directly postively regulated by P1.
A 'has effector activity' B if A and B are GO molecular functions (GO_0003674), A 'has component activity' B and B is the effector (output function) of B. Each compound function has only one effector activity.
2017-09-22T14:14:36Z
This relation is designed for constructing compound molecular functions, typically in combination with one or more regulatory component activity relations.
has effector activity
A 'has effector activity' B if A and B are GO molecular functions (GO_0003674), A 'has component activity' B and B is the effector (output function) of B. Each compound function has only one effector activity.
Primitive instance level timing relation between events
before or simultaneous with
x simultaneous with y iff ω(x) = ω(y) and ω(α ) = ω(α), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point and '=' indicates the same instance in time.
RO:0002082
uberon
simultaneous_with
simultaneous_with
t1 simultaneous_with t2 iff:= t1 before_or_simultaneous_with t2 and not (t1 before t2)
simultaneous with
simultaneous with
David Osumi-Sutherland
Previously had ID http://purl.obolibrary.org/obo/RO_0002122 in test files in sandpit - but this seems to have been dropped from ro-edit.owl at some point. No re-use under this ID AFAIK, but leaving note here in case we run in to clashes down the line. Official ID now chosen from DOS ID range.
during which ends
David Osumi-Sutherland
X ends_after Y iff: end(Y) before_or_simultaneous_with end(X)
ends after
David Osumi-Sutherland
starts_at_end_of
RO:0002087
external
uberon
immediately_preceded_by
immediately_preceded_by
X immediately_preceded_by Y iff: end(X) simultaneous_with start(Y)
immediately preceded by
immediately preceded by
David Osumi-Sutherland
ends_at_start_of
meets
RO:0002090
external
immediately_precedes
immediately_precedes
X immediately_precedes_Y iff: end(X) simultaneous_with start(Y)
immediately precedes
immediately precedes
David Osumi-Sutherland
o
overlaps
X ends_during Y iff: ((start(Y) before_or_simultaneous_with end(X)) AND end(X) before_or_simultaneous_with end(Y).
ends during
Relation between a neuron and a material anatomical entity that its soma is part of.
has soma location
Relation between an anatomical structure (including cells) and a neuron that chemically synapses to it.
RO:0002103
uberon
synapsed_by
synapsed_by
synapsed by
synapsed by
Every B cell[CL_0000236] has plasma membrane part some immunoglobulin complex[GO_0019814]
Holds between a cell c and a protein complex or protein p if and only if that cell has as part a plasma_membrane[GO:0005886], and that plasma membrane has p as part.
has plasma membrane part
Relation between a neuron and an anatomical structure (including cells) that it chemically synapses to.
N1 synapsed_to some N2
Expands to:
N1 SubclassOf (
has_part some (
‘pre-synaptic membrane ; GO:0042734’ that part_of some (
‘synapse ; GO:0045202’ that has_part some (
‘post-synaptic membrane ; GO:0045211’ that part_of some N2))))
synapsed to
A overlaps B if they share some part in common.
x overlaps y if and only if there exists some z such that x has part z and z part of y
x overlaps y iff they have some part in common.
http://purl.obolibrary.org/obo/BFO_0000051 some (http://purl.obolibrary.org/obo/BFO_0000050 some ?Y)
RO:0002131
external
spatial
uberon
overlaps
overlaps
"(forall (x y) (iff (overlaps x y) (exists (z) (and (part of z x) (part of z y)))))" CLIF []
overlaps
overlaps
true
x overlaps y iff they have some part in common.
BSPO:cjm
Relation between a 'neuron projection bundle' and a region in which one or more of its component neuron projections either synapses to targets or receives synaptic input.
T innervates some R
Expands_to: T has_fasciculating_neuron_projection that synapse_in some R.
RO:0002134
uberon
innervates
innervates
innervates
innervates
X continuous_with Y if and only if X and Y share a fiat boundary.
The label for this relation was previously connected to. I relabeled this to "continuous with". The standard notion of connectedness does not imply shared boundaries - e.g. Glasgow connected_to Edinburgh via M8; my patella connected_to my femur (via patellar-femoral joint)
RO:0002150
uberon
continuous_with
continuous_with
continuous with
continuous with
FMA:85972
lactation SubClassOf 'only in taxon' some 'Mammalia'
x only in taxon y if and only if x is in taxon y, and there is no other organism z such that y!=z a and x is in taxon z.
The original intent was to treat this as a macro that expands to 'in taxon' only ?Y - however, this is not necessary if we instead have supplemental axioms that state that each pair of sibling tax have a disjointness axiom using the 'in taxon' property - e.g.
'in taxon' some Eukaryota DisjointWith 'in taxon' some Eubacteria
only in taxon
x is in taxon y if an only if y is an organism, and the relationship between x and y is one of: part of (reflexive), developmentally preceded by, derives from, secreted by, expressed.
RO:0002162
uberon
in_taxon
in_taxon
Connects a biological entity to its taxon of origin.
in taxon
A is spatially_disjoint_from B if and only if they have no parts in common
There are two ways to encode this as a shortcut relation. The other possibility to use an annotation assertion between two classes, and expand this to a disjointness axiom.
Note that it would be possible to use the relation to label the relationship between a near infinite number of structures - between the rings of saturn and my left earlobe. The intent is that this is used for parsiomoniously for disambiguation purposes - for example, between siblings in a jointly exhaustive pairwise disjointness hierarchy
BFO_0000051 exactly 0 (BFO_0000050 some ?Y)
spatially disjoint from
https://github.com/obophenotype/uberon/wiki/Part-disjointness-Design-Pattern
a 'toe distal phalanx bone' that is connected to a 'toe medial phalanx bone' (an interphalangeal joint *connects* these two bones).
a is connected to b if and only if a and b are discrete structure, and there exists some connecting structure c, such that c connects a and b
RO:0002170
uberon
connected_to
connected_to
connected to
connected to
https://github.com/obophenotype/uberon/wiki/Connectivity-Design-Pattern
https://github.com/obophenotype/uberon/wiki/Modeling-articulations-Design-Pattern
The M8 connects Glasgow and Edinburgh
a 'toe distal phalanx bone' that is connected to a 'toe medial phalanx bone' (an interphalangeal joint *connects* these two bones).
c connects a if and only if there exist some b such that a and b are similar parts of the same system, and c connects b, specifically, c connects a with b. When one structure connects two others it unites some aspect of the function or role they play within the system.
RO:0002176
uberon
connects
connects
connects
connects
https://github.com/obophenotype/uberon/wiki/Connectivity-Design-Pattern
https://github.com/obophenotype/uberon/wiki/Modeling-articulations-Design-Pattern
a is attached to part of b if a is attached to b, or a is attached to some p, where p is part of b.
RO:0002177
uberon
attaches_to_part_of
attaches_to_part_of
attached to part of
attached to part of
Relation between an arterial structure and another structure, where the arterial structure acts as a conduit channeling fluid, substance or energy.
Individual ontologies should provide their own constraints on this abstract relation. For example, in the realm of anatomy this should hold between an artery and an anatomical structure
RO:0002178
uberon
supplies
supplies
supplies
supplies
Relation between an collecting structure and another structure, where the collecting structure acts as a conduit channeling fluid, substance or energy away from the other structure.
Individual ontologies should provide their own constraints on this abstract relation. For example, in the realm of anatomy this should hold between a vein and an anatomical structure
RO:0002179
uberon
drains
drains
drains
drains
w 'has component' p if w 'has part' p and w is such that it can be directly disassembled into into n parts p, p2, p3, ..., pn, where these parts are of similar type.
The definition of 'has component' is still under discussion. The challenge is in providing a definition that does not imply transitivity.
For use in recording has_part with a cardinality constraint, because OWL does not permit cardinality constraints to be used in combination with transitive object properties. In situations where you would want to say something like 'has part exactly 5 digit, you would instead use has_component exactly 5 digit.
RO:0002180
external
uberon
has_component
qualifier
has_component
qualifier
For use in recording has_part with a cardinality constraint.
placeholder relation to indicate normality/abnormality.
has component
has component
x develops from y if and only if either (a) x directly develops from y or (b) there exists some z such that x directly develops from z and z develops from y
RO:0002202
uberon
develops_from
develops_from
This is the transitive form of the develops from relation
develops from
develops from
inverse of develops from
RO:0002203
uberon
develops_into
develops_into
develops into
develops into
Candidate definition: x directly_develops from y if and only if there exists some developmental process (GO:0032502) p such that x and y both participate in p, and x is the output of p and y is the input of p, and a substantial portion of the matter of x comes from y, and the start of x is coincident with or after the end of y.
FBbt
RO:0002207
has developmental precursor
uberon
directly_develops_from
directly_develops_from
TODO - add child relations from DOS
directly develops from
directly develops from
inverse of directly develops from
developmental precursor of
directly develops into
p regulates q iff p is causally upstream of q, the execution of p is not constant and varies according to specific conditions, and p influences the rate or magnitude of execution of q due to an effect either on some enabler of q or some enabler of a part of q.
process(P1) regulates process(P2) iff: P1 results in the initiation or termination of P2 OR affects the frequency of its initiation or termination OR affects the magnitude or rate of output of P2.
We use 'regulates' here to specifically imply control. However, many colloquial usages of the term correctly correspond to the weaker relation of 'causally upstream of or within' (aka influences). Consider relabeling to make things more explicit
Chris Mungall
David Hill
Tanya Berardini
GO
Regulation precludes parthood; the regulatory process may not be within the regulated process.
regulates (processual)
false
RO:0002211
external
regulates
regulates
regulates
regulates
regulates (processual)
Process(P1) negatively regulates process(P2) iff: P1 terminates P2, or P1 descreases the the frequency of initiation of P2 or the magnitude or rate of output of P2.
p negatively regulates q iff p regulates q, and p decreases the rate or magnitude of execution of q.
Chris Mungall
negatively regulates (process to process)
RO:0002212
external
negatively_regulates
negatively_regulates
negatively regulates
negatively regulates
Process(P1) postively regulates process(P2) iff: P1 initiates P2, or P1 increases the the frequency of initiation of P2 or the magnitude or rate of output of P2.
p positively regulates q iff p regulates q, and p increases the rate or magnitude of execution of q.
Chris Mungall
positively regulates (process to process)
RO:0002213
external
positively_regulates
positively_regulates
positively regulates
positively regulates
mechanosensory neuron capable of detection of mechanical stimulus involved in sensory perception (GO:0050974)
osteoclast SubClassOf 'capable of' some 'bone resorption'
A relation between a material entity (such as a cell) and a process, in which the material entity has the ability to carry out the process.
A relation between a material entity (such as a cell) and a process, in which the material entity has the ability to carry out the process.
Chris Mungall
has function realized in
For compatibility with BFO, this relation has a shortcut definition in which the expression "capable of some P" expands to "bearer_of (some realized_by only P)".
RO:0002215
uberon
capable_of
capable_of
capable of
capable of
c stands in this relationship to p if and only if there exists some p' such that c is capable_of p', and p' is part_of p.
Chris Mungall
has function in
RO:0002216
uberon
capable_of_part_of
capable_of_part_of
capable of part of
capable of part of
true
x surrounded_by y if and only if (1) x is adjacent to y and for every region r that is adjacent to x, r overlaps y (2) the shared boundary between x and y occupies the majority of the outermost boundary of x
RO:0002219
uberon
surrounded_by
surrounded_by
surrounded by
surrounded by
A caterpillar walking on the surface of a leaf is adjacent_to the leaf, if one of the caterpillar appendages is touching the leaf. In contrast, a butterfly flying close to a flower is not considered adjacent, unless there are any touching parts.
The epidermis layer of a vertebrate is adjacent to the dermis.
The plasma membrane of a cell is adjacent to the cytoplasm, and also to the cell lumen which the cytoplasm occupies.
The skin of the forelimb is adjacent to the skin of the torso if these are considered anatomical subdivisions with a defined border. Otherwise a relation such as continuous_with would be used.
x adjacent to y if and only if x and y share a boundary.
This relation acts as a join point with BSPO
RO:0002220
spatial
uberon
adjacent_to
adjacent_to
adjacent to
adjacent to
A caterpillar walking on the surface of a leaf is adjacent_to the leaf, if one of the caterpillar appendages is touching the leaf. In contrast, a butterfly flying close to a flower is not considered adjacent, unless there are any touching parts.
inverse of surrounded by
RO:0002221
uberon
surrounds
surrounds
surrounds
surrounds
Chris Mungall
Do not use this relation directly. It is ended as a grouping for relations between occurrents involving the relative timing of their starts and ends.
https://docs.google.com/document/d/1kBv1ep_9g3sTR-SD3jqzFqhuwo9TPNF-l-9fUDbO6rM/edit?pli=1
A relation that holds between two occurrents. This is a grouping relation that collects together all the Allen relations.
temporally related to
inverse of starts with
RO:0002223
uberon
starts
starts
starts
starts
Every insulin receptor signaling pathway starts with the binding of a ligand to the insulin receptor
x starts with y if and only if x has part y and the time point at which x starts is equivalent to the time point at which y starts. Formally: α(y) = α(x) ∧ ω(y) < ω(x), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point.
RO:0002224
external
uberon
starts_with
starts_with
starts with
starts with
x develops from part of y if and only if there exists some z such that x develops from z and z is part of y
RO:0002225
uberon
develops_from_part_of
develops_from_part_of
develops from part of
develops from part of
x develops_in y if x is located in y whilst x is developing
EHDAA2
Jonathan Bard, EHDAA2
RO:0002226
uberon
develops_in
develops_in
develops in
develops in
inverse of ends with
Chris Mungall
RO:0002229
uberon
ends
ends
ends
ends
x ends with y if and only if x has part y and the time point at which x ends is equivalent to the time point at which y ends. Formally: α(y) > α(x) ∧ ω(y) = ω(x), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point.
Chris Mungall
finished by
RO:0002230
external
uberon
ends_with
ends_with
ends with
ends with
x 'has starts location' y if and only if there exists some process z such that x 'starts with' z and z 'occurs in' y
has start location
x 'has end location' y if and only if there exists some process z such that x 'ends with' z and z 'occurs in' y
ends with process that occurs in
has end location
p has input c iff: p is a process, c is a material entity, c is a participant in p, c is present at the start of p, and the state of c is modified during p.
Chris Mungall
consumes
RO:0002233
external
has_input
has_input
has input
has input
https://wiki.geneontology.org/Has_input
p has output c iff c is a participant in p, c is present at the end of p, and c is not present in the same state at the beginning of p.
produces
RO:0002234
external
has_output
has_output
has output
has output
https://wiki.geneontology.org/Has_output
In the tree T depicted in https://oborel.github.io/obo-relations/branching_part_of.png, B1 is connecting branch of S, and B1-1 as a connecting branch of B1.
b connecting-branch-of s iff b is connected to s, and there exists some tree-like structure t such that the mereological sum of b plus s is either the same as t or a branching-part-of t.
RO:0002252
uberon
connecting_branch_of
connecting_branch_of
connecting branch of
inverse of connecting branch of
has connecting branch
Mammalian thymus has developmental contribution from some pharyngeal pouch 3; Mammalian thymus has developmental contribution from some pharyngeal pouch 4 [Kardong]
x has developmental contribution from y iff x has some part z such that z develops from y
RO:0002254
uberon
has_developmental_contribution_from
has_developmental_contribution_from
has developmental contribution from
has developmental contribution from
inverse of has developmental contribution from
developmentally contributes to
t1 induced_by t2 if there is a process of developmental induction (GO:0031128) with t1 and t2 as interacting participants. t2 causes t1 to change its fate from a precursor material anatomical entity type T to T', where T' develops_from T
We place this under 'developmentally preceded by'. This placement should be examined in the context of reciprocal inductions[cjm]
RO:0002256
uberon
developmentally_induced_by
developmentally_induced_by
developmentally induced by
developmentally induced by
Inverse of developmentally induced by
developmentally induces
Candidate definition: x developmentally related to y if and only if there exists some developmental process (GO:0032502) p such that x and y both participates in p, and x is the output of p and y is the input of p
false
In general you should not use this relation to make assertions - use one of the more specific relations below this one
This relation groups together various other developmental relations. It is fairly generic, encompassing induction, developmental contribution and direct and transitive develops from
developmentally preceded by
A faulty traffic light (material entity) whose malfunctioning (a process) is causally upstream of a traffic collision (a process): the traffic light acts upstream of the collision.
c acts upstream of p if and only if c enables some f that is involved in p' and p' occurs chronologically before p, is not part of p, and affects the execution of p. c is a material entity and f, p, p' are processes.
acts upstream of
A gene product that has some activity, where that activity may be a part of a pathway or upstream of the pathway.
c acts upstream of or within p if c is enables f, and f is causally upstream of or within p. c is a material entity and p is an process.
affects
acts upstream of or within
https://wiki.geneontology.org/Acts_upstream_of_or_within
x developmentally replaces y if and only if there is some developmental process that causes x to move or to cease to exist, and for the site that was occupied by x to become occupied by y, where y either comes into existence in this site or moves to this site from somewhere else
This relation is intended for cases such as when we have a bone element replacing its cartilage element precursor. Currently most AOs represent this using 'develops from'. We need to decide whether 'develops from' will be generic and encompass replacement, or whether we need a new name for a generic relation that encompasses replacement and development-via-cell-lineage
RO:0002285
uberon
developmentally_replaces
developmentally_replaces
developmentally replaces
developmentally replaces
Inverse of developmentally preceded by
developmentally succeeded by
'hypopharyngeal eminence' SubClassOf 'part of precursor of' some tongue
part of developmental precursor of
p results in the developmental progression of s iff p is a developmental process and s is an anatomical entity and p causes s to undergo a change in state at some point along its natural developmental cycle (this cycle starts with its formation, through the mature structure, and ends with its loss).
This property and its subproperties are being used primarily for the definition of GO developmental processes. The property hierarchy mirrors the core GO hierarchy. In future we may be able to make do with a more minimal set of properties, but due to the way GO is currently structured we require highly specific relations to avoid incorrect entailments. To avoid this, the corresponding genus terms in GO should be declared mutually disjoint.
RO:0002295
external
results_in_developmental_progression_of
results_in_developmental_progression_of
results in developmental progression of
results in developmental progression of
every flower development (GO:0009908) results in development of some flower (PO:0009046)
p 'results in development of' c if and only if p is a developmental process and p results in the state of c changing from its initial state as a primordium or anlage through its mature state and to its final state.
results in development of
an annotation of gene X to anatomical structure formation with results_in_formation_of UBERON:0000007 (pituitary gland) means that at the beginning of the process a pituitary gland does not exist and at the end of the process a pituitary gland exists.
every "endocardial cushion formation" (GO:0003272) results_in_formation_of some "endocardial cushion" (UBERON:0002062)
GOC:mtg_berkeley_2013
RO:0002297
external
results_in_formation_of
results_in_formation_of
results in formation of
results in formation of anatomical entity
an annotation of gene X to cell morphogenesis with results_in_morphogenesis_of CL:0000540 (neuron) means that at the end of the process an input neuron has attained its shape.
tongue morphogenesis (GO:0043587) results in morphogenesis of tongue (UBERON:0001723)
The relationship that links an entity with the process that results in the formation and shaping of that entity over time from an immature to a mature state.
results in morphogenesis of
an annotation of gene X to cell maturation with results_in_maturation_of CL:0000057 (fibroblast) means that the fibroblast is mature at the end of the process
bone maturation (GO:0070977) results_in_maturation_of bone (UBERON:0001474)
The relationship that links an entity with a process that results in the progression of the entity over time that is independent of changes in it's shape and results in an end point state of that entity.
results in maturation of
Hydrozoa (NCBITaxon_6074) SubClassOf 'has habitat' some 'Hydrozoa habitat'
where
'Hydrozoa habitat' SubClassOf overlaps some ('marine environment' (ENVO_00000569) and 'freshwater environment' (ENVO_01000306) and 'wetland' (ENVO_00000043)) and 'has part' some (freshwater (ENVO_00002011) or 'sea water' (ENVO_00002149)) -- http://eol.org/pages/1795/overview
x 'has habitat' y if and only if: x is an organism, y is a habitat, and y can sustain and allow the growth of a population of xs.
adapted for living in
A population of xs will possess adaptations (either evolved naturally or via artifical selection) which permit it to exist and grow in y.
has habitat
has habitat
p is causally upstream of, positive effect q iff p is casually upstream of q, and the execution of p is required for the execution of q.
cjm
holds between x and y if and only if x is causally upstream of y and the progression of x increases the frequency, rate or extent of y
causally upstream of, positive effect
p is causally upstream of, negative effect q iff p is casually upstream of q, and the execution of p decreases the execution of q.
cjm
holds between x and y if and only if x is causally upstream of y and the progression of x decreases the frequency, rate or extent of y
causally upstream of, negative effect
q characteristic of part of w if and only if there exists some p such that q inheres in p and p part of w.
q inheres in part of w if and only if there exists some p such that q inheres in p and p part of w.
Because part_of is transitive, inheres in is a sub-relation of characteristic of part of
Because part_of is transitive, inheres in is a sub-relation of inheres in part of
inheres in part of
characteristic of part of
inheres in part of
true
an annotation of gene X to cell differentiation with results_in_maturation_of CL:0000057 (fibroblast) means that at the end of the process the input cell that did not have features of a fibroblast, now has the features of a fibroblast.
The relationship that links a specified entity with the process that results in an unspecified entity acquiring the features and characteristics of the specified entity
results in acquisition of features of
A relationship that holds via some environmental process
evolutionarily related to
A relationship that is mediated in some way by the environment or environmental feature (ENVO:00002297)
Awaiting class for domain/range constraint, see: https://github.com/OBOFoundry/Experimental-OBO-Core/issues/6
Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving ecological interactions
ecologically related to
A mereological relationship or a topological relationship
Chris Mungall
Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving parthood or connectivity relationships
mereotopologically related to
A relationship that holds between entities participating in some developmental process (GO:0032502)
Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving organismal development
developmentally related to
a particular instances of akt-2 enables some instance of protein kinase activity
c enables p iff c is capable of p and c acts to execute p.
Chris Mungall
catalyzes
executes
has
is catalyzing
is executing
This relation differs from the parent relation 'capable of' in that the parent is weaker and only expresses a capability that may not be actually realized, whereas this relation is always realized.
This relation is currently used experimentally by the Gene Ontology Consortium. It may not be stable and may be obsoleted at some future time.
enables
https://wiki.geneontology.org/Enables
A grouping relationship for any relationship directly involving a function, or that holds because of a function of one of the related entities.
Chris Mungall
This is a grouping relation that collects relations used for the purpose of connecting structure and function
RO:0002328
uberon
functionally_related_to
functionally_related_to
functionally related to
functionally related to
this relation holds between c and p when c is part of some c', and c' is capable of p.
false
part of structure that is capable of
true
c involved_in p if and only if c enables some process p', and p' is part of p
actively involved in
enables part of
involved in
https://wiki.geneontology.org/Involved_in
inverse of enables
Chris Mungall
enabled by
https://wiki.geneontology.org/Enabled_by
inverse of regulates
Chris Mungall
regulated by (processual)
regulated by
inverse of negatively regulates
Chris Mungall
negatively regulated by
inverse of positively regulates
Chris Mungall
positively regulated by
A relationship that holds via some process of localization
Do not use this relation directly. It is a grouping relation.
related via localization to
This relationship holds between p and l when p is a transport or localization process in which the outcome is to move some cargo c from some initial location l to some destination.
has target start location
This relationship holds between p and l when p is a transport or localization process in which the outcome is to move some cargo c from a an initial location to some destination l.
has target end location
Holds between p and l when p is a transportation or localization process and the outcome of this process is to move c from one location to another, and the route taken by c follows a path that is aligned_with l
results in transport along
Holds between p and m when p is a transportation or localization process and the outcome of this process is to move c from one location to another, and the route taken by c follows a path that crosses m.
results in transport across
'pollen tube growth' results_in growth_of some 'pollen tube'
results in growth of
'mitochondrial transport' results_in_transport_to_from_or_in some mitochondrion (GO:0005739)
results in transport to from or in
An organism that is a member of a population of organisms
is member of is a mereological relation between a item and a collection.
is member of
member part of
SIO
member of
has member is a mereological relation between a collection and an item.
SIO
RO:0002351
uberon
has_member
has_member
has member
has member
inverse of has input
Chris Mungall
RO:0002352
uberon
input_of
input_of
input of
input of
inverse of has output
RO:0002353
external
uberon
output_of
output_of
output of
output of
formed as result of
a is attached to b if and only if a and b are discrete objects or object parts, and there are physical connections between a and b such that a force pulling a will move b, or a force pulling b will move a
RO:0002371
uberon
attaches_to
attaches_to
attached to
attached to
m has_muscle_origin s iff m is attached_to s, and it is the case that when m contracts, s does not move. The site of the origin tends to be more proximal and have greater mass than what the other end attaches to.
RO:0002372
uberon
has_muscle_origin
has_muscle_origin
has muscle origin
has muscle origin
We need to import uberon muscle to create a stricter domain constraint
m has_muscle_insertion s iff m is attaches_to s, and it is the case that when m contracts, s moves. Insertions are usually connections of muscle via tendon to bone.
RO:0002373
uberon
has_muscle_insertion
has_muscle_insertion
has muscle insertion
has muscle insertion
We need to import uberon muscle into RO to use as a stricter domain constraint
A relationship that holds between two material entities in a system of connected structures, where the branching relationship holds based on properties of the connecting network.
Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving branching relationships
This relation can be used for geographic features (e.g. rivers) as well as anatomical structures (plant branches and roots, leaf veins, animal veins, arteries, nerves)
in branching relationship with
https://github.com/obophenotype/uberon/issues/170
Deschutes River tributary_of Columbia River
inferior epigastric vein tributary_of external iliac vein
x tributary_of y if and only if x a channel for the flow of a substance into y, where y is larger than x. If x and y are hydrographic features, then y is the main stem of a river, or a lake or bay, but not the sea or ocean. If x and y are anatomical, then y is a vein.
This relation can be used for geographic features (e.g. rivers) as well as anatomical structures (veins, arteries)
RO:0002376
uberon
tributary_of
tributary_of
tributary of
tributary of
http://en.wikipedia.org/wiki/Tributary
A lump of clay and a statue
x spatially_coextensive_with y if and inly if x and y have the same location
This relation is added for formal completeness. It is unlikely to be used in many practical scenarios
spatially coextensive with
In the tree T depicted in https://oborel.github.io/obo-relations/branching_part_of.png, B1 is a (direct) branching part of T. B1-1, B1-2, and B1-3 are also branching parts of T, but these are considered indirect branching parts as they do not directly connect to the main stem S
x is a branching part of y if and only if x is part of y and x is connected directly or indirectly to the main stem of y
RO:0002380
uberon
branching_part_of
branching_part_of
branching part of
branching part of
FMA:85994
x has developmental potential involving y iff x is capable of a developmental process with output y. y may be the successor of x, or may be a different structure in the vicinity (as for example in the case of developmental induction).
has developmental potential involving
x has potential to developmentrally contribute to y iff x developmentally contributes to y or x is capable of developmentally contributing to y
RO:0002385
uberon
has_potential_to_developmentally_contribute_to
has_potential_to_developmentally_contribute_to
has potential to developmentally contribute to
has potential to developmentally contribute to
x has potential to developmentally induce y iff x developmentally induces y or x is capable of developmentally inducing y
has potential to developmentally induce
x has the potential to develop into y iff x develops into y or if x is capable of developing into y
RO:0002387
uberon
has_potential_to_develop_into
has_potential_to_develop_into
This relation has a stronger meaning than merely indicating that X may develop into Y, in that the capability of developing into Y is always present, even if X does not always actually develop into Y. In particular, this means that if Y is restricted to a given taxon T, X is necessarily likewise restricted.
has potential to develop into
has potential to develop into
x has potential to directly develop into y iff x directly develops into y or x is capable of directly developing into y
has potential to directly develop into
inverse of upstream of
Chris Mungall
RO:0002404
external
causally_downstream_of
causally_downstream_of
causally downstream of
causally downstream of
Chris Mungall
immediately causally downstream of
p indirectly positively regulates q iff p is indirectly causally upstream of q and p positively regulates q.
indirectly activates
indirectly positively regulates
https://wiki.geneontology.org/Indirectly_positively_regulates
p indirectly negatively regulates q iff p is indirectly causally upstream of q and p negatively regulates q.
indirectly inhibits
indirectly negatively regulates
https://wiki.geneontology.org/Indirectly_negatively_regulates
This relation groups causal relations between material entities and causal relations between processes
relation that links two events, processes, states, or objects such that one event, process, state, or object (a cause) contributes to the production of another event, process, state, or object (an effect) where the cause is partly or wholly responsible for the effect, and the effect is partly or wholly dependent on the cause.
This branch of the ontology deals with causal relations between entities. It is divided into two branches: causal relations between occurrents/processes, and causal relations between material entities. We take an 'activity flow-centric approach', with the former as primary, and define causal relations between material entities in terms of causal relations between occurrents.
To define causal relations in an activity-flow type network, we make use of 3 primitives:
* Temporal: how do the intervals of the two occurrents relate?
* Is the causal relation regulatory?
* Is the influence positive or negative
The first of these can be formalized in terms of the Allen Interval Algebra. Informally, the 3 bins we care about are 'direct', 'indirect' or overlapping. Note that all causal relations should be classified under a RO temporal relation (see the branch under 'temporally related to'). Note that all causal relations are temporal, but not all temporal relations are causal. Two occurrents can be related in time without being causally connected. We take causal influence to be primitive, elucidated as being such that has the upstream changed, some qualities of the donwstream would necessarily be modified.
For the second, we consider a relationship to be regulatory if the system in which the activities occur is capable of altering the relationship to achieve some objective. This could include changing the rate of production of a molecule.
For the third, we consider the effect of the upstream process on the output(s) of the downstream process. If the level of output is increased, or the rate of production of the output is increased, then the direction is increased. Direction can be positive, negative or neutral or capable of either direction. Two positives in succession yield a positive, two negatives in succession yield a positive, otherwise the default assumption is that the net effect is canceled and the influence is neutral.
Each of these 3 primitives can be composed to yield a cross-product of different relation types.
This branch of the ontology deals with causal relations between entities. It is divided into two branches: causal relations between occurrents/processes, and causal relations between material entities. We take an 'activity flow-centric approach', with the former as primary, and define causal relations between material entities in terms of causal relations between occurrents.
To define causal relations in an activity-flow type network, we make use of 3 primitives:
* Temporal: how do the intervals of the two occurrents relate?
* Is the causal relation regulatory?
* Is the influence positive or negative?
The first of these can be formalized in terms of the Allen Interval Algebra. Informally, the 3 bins we care about are 'direct', 'indirect' or overlapping. Note that all causal relations should be classified under a RO temporal relation (see the branch under 'temporally related to'). Note that all causal relations are temporal, but not all temporal relations are causal. Two occurrents can be related in time without being causally connected. We take causal influence to be primitive, elucidated as being such that has the upstream changed, some qualities of the donwstream would necessarily be modified.
For the second, we consider a relationship to be regulatory if the system in which the activities occur is capable of altering the relationship to achieve some objective. This could include changing the rate of production of a molecule.
For the third, we consider the effect of the upstream process on the output(s) of the downstream process. If the level of output is increased, or the rate of production of the output is increased, then the direction is increased. Direction can be positive, negative or neutral or capable of either direction. Two positives in succession yield a positive, two negatives in succession yield a positive, otherwise the default assumption is that the net effect is canceled and the influence is neutral.
Each of these 3 primitives can be composed to yield a cross-product of different relation types.
Chris Mungall
Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect.
causally related to
relation that links two events, processes, states, or objects such that one event, process, state, or object (a cause) contributes to the production of another event, process, state, or object (an effect) where the cause is partly or wholly responsible for the effect, and the effect is partly or wholly dependent on the cause.
https://en.wikipedia.org/wiki/Causality
p is causally upstream of q if and only if p precedes q and p and q are linked in a causal chain
p is causally upstream of q iff p is causally related to q, the end of p precedes the end of q, and p is not an occurrent part of q.
Chris Mungall
RO:0002411
external
causally_upstream_of
causally_upstream_of
causally upstream of
causally upstream of
p is immediately causally upstream of q iff both (a) p immediately precedes q and (b) p is causally upstream of q. In addition, the output of p must be an input of q.
p is immediately causally upstream of q iff p is causally upstream of q, and the end of p is coincident with the beginning of q.
Chris Mungall
immediately causally upstream of
p 'causally upstream or within' q iff (1) the end of p is before the end of q and (2) the execution of p exerts some causal influence over the outputs of q; i.e. if p was abolished or the outputs of p were to be modified, this would necessarily affect q.
p is 'causally upstream or within' q iff p is causally related to q, and the end of p precedes, or is coincident with, the end of q.
We would like to make this disjoint with 'preceded by', but this is prohibited in OWL2
Chris Mungall
influences (processual)
RO:0002418
external
affects
causally_upstream_of_or_within
causally_upstream_of_or_within
causally upstream of or within
inverse of causally upstream of or within
Chris Mungall
RO:0002427
external
causally_downstream_of_or_within
causally_downstream_of_or_within
causally downstream of or within
c involved in regulation of p if c is involved in some p' and p' regulates some p
Chris Mungall
involved in regulation of
c involved in regulation of p if c is involved in some p' and p' positively regulates some p
Chris Mungall
involved in positive regulation of
c involved in regulation of p if c is involved in some p' and p' negatively regulates some p
Chris Mungall
involved in negative regulation of
c involved in or regulates p if and only if either (i) c is involved in p or (ii) c is involved in regulation of p
OWL does not allow defining object properties via a Union
Chris Mungall
involved in or reguates
involved in or involved in regulation of
p contributes to morphology of w if and only if a change in the morphology of p entails a change in the morphology of w. Examples: every skull contributes to morphology of the head which it is a part of. Counter-example: nuclei do not generally contribute to the morphology of the cell they are part of, as they are buffered by cytoplasm.
RO:0002433
uberon
contributes_to_morphology_of
contributes_to_morphology_of
contributes to morphology of
A relationship that holds between two entities in which the processes executed by the two entities are causally connected.
This relation and all sub-relations can be applied to either (1) pairs of entities that are interacting at any moment of time (2) populations or species of entity whose members have the disposition to interact (3) classes whose members have the disposition to interact.
Considering relabeling as 'pairwise interacts with'
Chris Mungall
Note that this relationship type, and sub-relationship types may be redundant with process terms from other ontologies. For example, the symbiotic relationship hierarchy parallels GO. The relations are provided as a convenient shortcut. Consider using the more expressive processual form to capture your data. In the future, these relations will be linked to their cognate processes through rules.
in pairwise interaction with
interacts with
http://purl.obolibrary.org/obo/MI_0914
http://purl.obolibrary.org/obo/ro/docs/interaction-relations/
http://purl.obolibrary.org/obo/MI_0914
https://github.com/oborel/obo-relations/wiki/InteractionRelations
An interaction relationship in which the two partners are molecular entities that directly physically interact with each other for example via a stable binding interaction or a brief interaction during which one modifies the other.
Chris Mungall
binds
molecularly binds with
molecularly interacts with
http://purl.obolibrary.org/obo/MI_0915
http://purl.obolibrary.org/obo/MI_0915
Axiomatization to GO to be added later
Chris Mungall
An interaction relation between x and y in which x catalyzes a reaction in which a phosphate group is added to y.
phosphorylates
The entity A, immediately upstream of the entity B, has an activity that regulates an activity performed by B. For example, A and B may be gene products and binding of B by A regulates the kinase activity of B.
A and B can be physically interacting but not necessarily. Immediately upstream means there are no intermediate entity between A and B.
Chris Mungall
Vasundra Touré
molecularly controls
directly regulates activity of
The entity A, immediately upstream of the entity B, has an activity that negatively regulates an activity performed by B.
For example, A and B may be gene products and binding of B by A negatively regulates the kinase activity of B.
directly inhibits
molecularly decreases activity of
directly negatively regulates activity of
The entity A, immediately upstream of the entity B, has an activity that positively regulates an activity performed by B.
For example, A and B may be gene products and binding of B by A positively regulates the kinase activity of B.
directly activates
molecularly increases activity of
directly positively regulates activity of
Chris Mungall
This property or its subproperties is not to be used directly. These properties exist as helper properties that are used to support OWL reasoning.
helper property (not for use in curation)
'otolith organ' SubClassOf 'composed primarily of' some 'calcium carbonate'
x composed_primarily_of y if and only if more than half of the mass of x is made from y or units of the same type as y.
RO:0002473
uberon
composed_primarily_of
composed_primarily_of
composed primarily of
p has part that occurs in c if and only if there exists some p1, such that p has_part p1, and p1 occurs in c.
has part that occurs in
true
Chris Mungall
is kinase activity
See notes for inverse relation
receives input from
This is an exploratory relation. The label is taken from the FMA. It needs aligned with the neuron-specific relations such as has postsynaptic terminal in.
sends output to
Do not use this relation directly. It is ended as a grouping for a diverse set of relations, typically connecting an anatomical entity to a biological process or developmental stage.
relation between physical entity and a process or stage
x existence starts during y if and only if the time point at which x starts is after or equivalent to the time point at which y starts and before or equivalent to the time point at which y ends. Formally: x existence starts during y iff α(x) >= α(y) & α(x) <= ω(y).
RO:0002488
uberon
existence_starts_during
existence_starts_during
existence starts during
x starts ends with y if and only if the time point at which x starts is equivalent to the time point at which y starts. Formally: x existence starts with y iff α(x) = α(y).
RO:0002489
uberon
existence_starts_with
existence_starts_with
existence starts with
x existence overlaps y if and only if either (a) the start of x is part of y or (b) the end of x is part of y. Formally: x existence starts and ends during y iff (α(x) >= α(y) & α(x) <= ω(y)) OR (ω(x) <= ω(y) & ω(x) >= α(y))
The relations here were created based on work originally by Fabian Neuhaus and David Osumi-Sutherland. The work has not yet been vetted and errors in definitions may have occurred during transcription.
existence overlaps
x exists during y if and only if: 1) the time point at which x begins to exist is after or equal to the time point at which y begins and 2) the time point at which x ceases to exist is before or equal to the point at which y ends. Formally: x existence starts and ends during y iff α(x) >= α(y) & α(x) <= ω(y) & ω(x) <= ω(y) & ω(x) >= α(y)
RO:0002491
exists during
uberon
existence_starts_and_ends_during
existence_starts_and_ends_during
The relations here were created based on work originally by Fabian Neuhaus and David Osumi-Sutherland. The work has not yet been vetted and errors in definitions may have occurred during transcription.
existence starts and ends during
x existence ends during y if and only if the time point at which x ends is before or equivalent to the time point at which y ends and after or equivalent to the point at which y starts. Formally: x existence ends during y iff ω(x) <= ω(y) and ω(x) >= α(y).
RO:0002492
uberon
existence_ends_during
existence_ends_during
The relations here were created based on work originally by Fabian Neuhaus and David Osumi-Sutherland. The work has not yet been vetted and errors in definitions may have occurred during transcription.
existence ends during
x existence ends with y if and only if the time point at which x ends is equivalent to the time point at which y ends. Formally: x existence ends with y iff ω(x) = ω(y).
RO:0002493
uberon
existence_ends_with
existence_ends_with
The relations here were created based on work originally by Fabian Neuhaus and David Osumi-Sutherland. The work has not yet been vetted and errors in definitions may have occurred during transcription.
existence ends with
x transformation of y if x is the immediate transformation of y, or is linked to y through a chain of transformation relationships
RO:0002494
uberon
transformation_of
transformation_of
transformation of
x immediate transformation of y iff x immediately succeeds y temporally at a time boundary t, and all of the matter present in x at t is present in y at t, and all the matter in y at t is present in x at t
RO:0002495
uberon
immediate_transformation_of
immediate_transformation_of
immediate transformation of
x existence starts during or after y if and only if the time point at which x starts is after or equivalent to the time point at which y starts. Formally: x existence starts during or after y iff α (x) >= α (y).
RO:0002496
uberon
existence_starts_during_or_after
existence_starts_during_or_after
The relations here were created based on work originally by Fabian Neuhaus and David Osumi-Sutherland. The work has not yet been vetted and errors in definitions may have occurred during transcription.
existence starts during or after
x existence ends during or before y if and only if the time point at which x ends is before or equivalent to the time point at which y ends.
RO:0002497
uberon
existence_ends_during_or_before
existence_ends_during_or_before
The relations here were created based on work originally by Fabian Neuhaus and David Osumi-Sutherland. The work has not yet been vetted and errors in definitions may have occurred during transcription.
existence ends during or before
A relationship between a material entity and a process where the material entity has some causal role that influences the process
causal agent in process
p is causally related to q if and only if p or any part of p and q or any part of q are linked by a chain of events where each event pair is one of direct activation or direct inhibition. p may be upstream, downstream, part of or a container of q.
p is causally related to q if and only if p or any part of p and q or any part of q are linked by a chain of events where each event pair is one where the execution of p influences the execution of q. p may be upstream, downstream, part of, or a container of q.
Chris Mungall
Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect.
causal relation between processes
depends on
The intent is that the process branch of the causal property hierarchy is primary (causal relations hold between occurrents/processes), and that the material branch is defined in terms of the process branch
Chris Mungall
Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect.
causal relation between entities
s 'determined by part of' w if and only if there exists some f such that (1) s 'determined by' f and (2) f part_of w, or f=w.
determined by part of
Forelimb SubClassOf has_skeleton some 'Forelimb skeleton'
A relation between a segment or subdivision of an organism and the maximal subdivision of material entities that provides structural support for that segment or subdivision.
The skeleton of a structure may be a true skeleton (for example, the bony skeleton of a hand) or any kind of support framework (the hydrostatic skeleton of a sea star, the exoskeleton of an insect, the cytoskeleton of a cell).
RO:0002551
uberon
has_skeleton
has_skeleton
has skeleton
This should be to a more restricted class, but not the Uberon class may be too restricted since it is a composition-based definition of skeleton rather than functional.
Chris Mungall
causally influenced by (entity-centric)
causally influenced by
Chris Mungall
interaction relation helper property
http://purl.obolibrary.org/obo/ro/docs/interaction-relations/
https://github.com/oborel/obo-relations/wiki/InteractionRelations
Chris Mungall
molecular interaction relation helper property
The entity or characteristic A is causally upstream of the entity or characteristic B, A having an effect on B. An entity corresponds to any biological type of entity as long as a mass is measurable. A characteristic corresponds to a particular specificity of an entity (e.g., phenotype, shape, size).
Chris Mungall
Vasundra Touré
causally influences (entity-centric)
causally influences
A relation that holds between elements of a musculoskeletal system or its analogs.
Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving the biomechanical processes.
biomechanically related to
m1 has_muscle_antagonist m2 iff m1 has_muscle_insertion s, m2 has_muscle_insection s, m1 acts in opposition to m2, and m2 is responsible for returning the structure to its initial position.
RO:0002568
uberon
has_muscle_antagonist
has_muscle_antagonist
has muscle antagonist
inverse of branching part of
RO:0002569
uberon
has_branching_part
has_branching_part
has branching part
x is a conduit for y iff y overlaps through the lumen_of of x, and y has parts on either side of the lumen of x.
This relation holds between a thing with a 'conduit' (e.g. a bone foramen) and a 'conduee' (for example, a nerve) such that at the time the relationship holds, the conduee has two ends sticking out either end of the conduit. It should therefore note be used for objects that move through the conduit but whose spatial extent does not span the passage. For example, it would not be used for a mountain that contains a long tunnel through which trains pass. Nor would we use it for a digestive tract and objects such as food that pass through.
RO:0002570
uberon
conduit_for
conduit_for
conduit for
x lumen_of y iff x is the space or substance that is part of y and does not cross any of the inner membranes or boundaries of y that is maximal with respect to the volume of the convex hull.
RO:0002571
uberon
lumen_of
lumen_of
lumen of
s is luminal space of x iff s is lumen_of x and s is an immaterial entity
RO:0002572
uberon
luminal_space_of
luminal_space_of
luminal space of
inverse of has skeleton
RO:0002576
uberon
skeleton_of
skeleton_of
skeleton of
Process(P1) directly regulates process(P2) iff: P1 regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding regulates the kinase activity (P2) of protein B then P1 directly regulates P2.
p directly regulates q iff p is immediately causally upstream of q and p regulates q.
Chris Mungall
directly regulates (processual)
directly regulates
gland SubClassOf 'has part structure that is capable of' some 'secretion by cell'
s 'has part structure that is capable of' p if and only if there exists some part x such that s 'has part' x and x 'capable of' p
has part structure that is capable of
p results in breakdown of c if and only if the execution of p leads to c no longer being present at the end of p
results in breakdown of
RO:0002588
external
results_in_assembly_of
results_in_assembly_of
results in assembly of
RO:0002590
external
results_in_disassembly_of
results_in_disassembly_of
results in disassembly of
p results in organization of c iff p results in the assembly, arrangement of constituent parts, or disassembly of c
RO:0002592
external
results_in_organization_of
results_in_organization_of
results in organization of
A relationship that holds between a material entity and a process in which causality is involved, with either the material entity or some part of the material entity exerting some influence over the process, or the process influencing some aspect of the material entity.
Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect.
Chris Mungall
causal relation between material entity and a process
pyrethroid -> growth
Holds between c and p if and only if c is capable of some activity a, and a regulates p.
capable of regulating
Holds between c and p if and only if c is capable of some activity a, and a negatively regulates p.
capable of negatively regulating
renin -> arteriolar smooth muscle contraction
Holds between c and p if and only if c is capable of some activity a, and a positively regulates p.
capable of positively regulating
Inverse of 'causal agent in process'
RO:0002608
external
process_has_causal_agent
process_has_causal_agent
process has causal agent
p directly positively regulates q iff p is immediately causally upstream of q, and p positively regulates q.
directly positively regulates (process to process)
directly positively regulates
https://wiki.geneontology.org/Directly_positively_regulates
p directly negatively regulates q iff p is immediately causally upstream of q, and p negatively regulates q.
directly negatively regulates (process to process)
directly negatively regulates
https://wiki.geneontology.org/Directly_negatively_regulates
a produces b if some process that occurs_in a has_output b, where a and b are material entities. Examples: hybridoma cell line produces monoclonal antibody reagent; chondroblast produces avascular GAG-rich matrix.
RO:0003000
uberon
produces
produces
Note that this definition doesn't quite distinguish the output of a transformation process from a production process, which is related to the identity/granularity issue.
produces
produces
a produced_by b iff some process that occurs_in b has_output a.
RO:0003001
uberon
produced_by
produced_by
produced by
produced by
p 'has primary input ot output' c iff either (a) p 'has primary input' c or (b) p 'has primary output' c.
2018-12-13T11:26:17Z
RO:0004007
external
has_primary_input_or_output
has_primary_input_or_output
has primary input or output
p has primary output c if (a) p has output c and (b) the goal of process is to modify, produce, or transform c.
2018-12-13T11:26:32Z
RO:0004008
external
has_primary_output
has_primary_output
has primary output
p has primary output c if (a) p has output c and (b) the goal of process is to modify, produce, or transform c.
GOC:dph
GOC:kva
GOC:pt
PMID:27812932
p has primary input c if (a) p has input c and (b) the goal of process is to modify, consume, or transform c.
2018-12-13T11:26:56Z
has primary input
p has primary input c if (a) p has input c and (b) the goal of process is to modify, consume, or transform c.
GOC:dph
GOC:kva
GOC:pt
PMID:27812932
A relationship between a realizable entity R (e.g. function or disposition) and a material entity M where R is realized in response to a process that has an input stimulus of M.
2017-12-26T19:45:49Z
realized in response to stimulus
Holds between an entity and an process P where the entity enables some larger compound process, and that larger process has-part P.
2018-01-25T23:20:13Z
enables subfunction
cjm
2018-01-26T23:49:30Z
acts upstream of or within, positive effect
https://wiki.geneontology.org/Acts_upstream_of_or_within,_positive_effect
cjm
2018-01-26T23:49:51Z
acts upstream of or within, negative effect
https://wiki.geneontology.org/Acts_upstream_of_or_within,_negative_effect
c 'acts upstream of, positive effect' p if c is enables f, and f is causally upstream of p, and the direction of f is positive
cjm
2018-01-26T23:53:14Z
acts upstream of, positive effect
https://wiki.geneontology.org/Acts_upstream_of,_positive_effect
c 'acts upstream of, negative effect' p if c is enables f, and f is causally upstream of p, and the direction of f is negative
cjm
2018-01-26T23:53:22Z
acts upstream of, negative effect
https://wiki.geneontology.org/Acts_upstream_of,_negative_effect
cjm
2018-03-13T23:55:05Z
causally upstream of or within, negative effect
https://wiki.geneontology.org/Causally_upstream_of_or_within,_negative_effect
cjm
2018-03-13T23:55:19Z
causally upstream of or within, positive effect
A drought sensitivity trait that inheres in a whole plant is realized in a systemic response process in response to exposure to drought conditions.
An inflammatory disease that is realized in response to an inflammatory process occurring in the gut (which is itself the realization of a process realized in response to harmful stimuli in the mucosal lining of th gut)
Environmental polymorphism in butterflies: These butterflies have a 'responsivity to day length trait' that is realized in response to the duration of the day, and is realized in developmental processes that lead to increased or decreased pigmentation in the adult morph.
r 'realized in response to' s iff, r is a realizable (e.g. a plant trait such as responsivity to drought), s is an environmental stimulus (a process), and s directly causes the realization of r.
triggered by process
realized in response to
https://docs.google.com/document/d/1KWhZxVBhIPkV6_daHta0h6UyHbjY2eIrnON1WIRGgdY/edit
triggered by process
The entity A has an activity that regulates an activity of the entity B. For example, A and B are gene products where the catalytic activity of A regulates the kinase activity of B.
Vasundra Touré
regulates activity of
p acts on population of c iff c' is a collection, has members of type c, and p has participant c
2020-06-08T17:21:33Z
acts on population of
2021-02-26T07:28:29Z
results in fusion of
p is indirectly causally upstream of q iff p is causally upstream of q and there exists some process r such that p is causally upstream of r and r is causally upstream of q.
2022-09-26T06:07:17Z
indirectly causally upstream of
p indirectly regulates q iff p is indirectly causally upstream of q and p regulates q.
2022-09-26T06:08:01Z
indirectly regulates
'Lamp5-like Egln3_1 primary motor cortex GABAergic interneuron (Mus musculus)' subClass_of: has_characterizing_marker_set some 'NS forest marker set of Lamp5-like Egln3_1 MOp (Mouse).'; NS forest marker set of Lamp5-like Egln3_1 SubClass_of: ('has part' some 'Mouse Fbn2') and ('has part' some 'Mouse Chrna7') and ('has part' some 'Mouse Fam19a1').
transcriptomically defined cell type X subClass_of: (has_characterizing_marker_set some S1); S1 has_part some gene 1, S1 has_part some gene 2, S1 has_part some gene 3.
A relation that applies between a cell type and a set of markers that can be used to uniquely identify that cell type.
C has_characterizing_marker_set y iff: C is a cell type and y is a collection of genes or proteins whose expression is sufficient to distinguish cell type C from most or all other cell types.
This relation is not meant for cases where set of genes/proteins are only useful as markers in some specific context - e.g. in some specific location. In these cases it is recommended to make a more specific cell class restricted to the relevant context.
has marker gene combination
has marker signature set
has characterizing marker set
s3 has_cross_section s3 if and only if : there exists some 2d plane that intersects the bearer of s3, and the impression of s3 upon that plane has shape quality s2.
Example: a spherical object has the quality of being spherical, and the spherical quality has_cross_section round.
has cross section
s3 has_cross_section s3 if and only if : there exists some 2d plane that intersects the bearer of s3, and the impression of s3 upon that plane has shape quality s2.
https://orcid.org/0000-0002-6601-2165
A diagnostic testing device utilizes a specimen.
X device utilizes material Y means X and Y are material entities, and X is capable of some process P that has input Y.
A diagnostic testing device utilizes a specimen means that the diagnostic testing device is capable of an assay, and this assay a specimen as its input.
See github ticket https://github.com/oborel/obo-relations/issues/497
2021-11-08T12:00:00Z
utilizes
device utilizes material
A relationship that holds between a process and a characteristic in which process (P) regulates characteristic (C) iff:Â P results in the existence of C OR affects the intensity or magnitude of C.
regulates characteristic
A relationship that holds between a process and a characteristic in which process (P) positively regulates characteristic (C) iff:Â P results in an increase in the intensity or magnitude of C.
positively regulates characteristic
A relationship that holds between a process and a characteristic in which process (P) negatively regulates characteristic (C) iff:Â P results in a decrease in the intensity or magnitude of C.
negatively regulates characteristic
brachial artery vessel supplies blood to brachialis muscle
x vessel supplies blood to y if and only if x is a vessel that supplies blood directly or indirectly to an anatomical structure y.
2024-02-01T10:09:22Z
RO:0020101
uberon
vessel_supplies_blood_to
vessel_supplies_blood_to
vessel supplies blood to
cystic vein vessel drains blood from gallbladder
x vessel drains blood from y if and only if x is a vessel that drains blood directly or indirectly from an anatomical structure y.
2024-02-01T10:09:41Z
RO:0020102
uberon
vessel_drains_blood_from
vessel_drains_blood_from
vessel drains blood from
This property only applies to anatomical entities.
2024-10-29T09:55:07Z
is anatomical entity
p has anatomical participant c iff p has participant c, and c is an anatomical entity
2018-09-26T01:08:58Z
RO:0040036
external
results_in_changes_to_anatomical_or_cellular_structure
results_in_changes_to_anatomical_or_cellular_structure
results in changes to anatomical or cellular structure
chebi_ontology
has_parent_hydride
false
false
has parent hydride
chebi_ontology
is_conjugate_acid_of
true
false
is conjugate acid of
chebi_ontology
is_conjugate_base_of
true
false
is conjugate base of
chebi_ontology
is_substituent_group_from
false
false
is substituent group from
chebi_ontology
is_tautomer_of
true
is tautomer of
x anteriorly_connected_to y iff the anterior part of x is connected to y. i.e. x connected_to y and x posterior_to y.
uberon
anteriorly_connected_to
anteriorly connected to
x anteriorly_connected_to y iff the anterior part of x is connected to y. i.e. x connected_to y and x posterior_to y.
http://purl.obolibrary.org/obo/uberon/docs/Connectivity-Design-Pattern
carries
uberon
channel_for
channel for
uberon
channels_from
channels_from
uberon
channels_into
channels_into
x distally_connected_to y iff the distal part of x is connected to y. i.e. x connected_to y and x proximal_to y.
uberon
distally_connected_to
distally connected to
x distally_connected_to y iff the distal part of x is connected to y. i.e. x connected_to y and x proximal_to y.
http://purl.obolibrary.org/obo/uberon/docs/Connectivity-Design-Pattern
X extends_fibers into Y iff there exists some neuron (N) and N has_soma_location X and N 'has synaptic IO in region' some Y
uberon
extends_fibers_into
extends_fibers_into
X extends_fibers into Y iff there exists some neuron (N) and N has_soma_location X and N 'has synaptic IO in region' some Y
https://orcid.org/0000-0002-7073-9172
Relationship between a fluid and a material entity, where the fluid is the output of a realization of a filtration role that inheres in the material entity.
uberon
filtered_through
Relationship between a fluid and a filtration barrier, where the portion of fluid arises as a transformation of another portion of fluid on the other side of the barrier, with larger particles removed
filtered through
a indirectly_supplies s iff a has a branch and the branch supplies or indirectly supplies s.
add to RO
uberon
indirectly_supplies
indirectly_supplies
uberon
layer_part_of
layer part of
x posteriorly_connected_to y iff the posterior part of x is connected to y. i.e. x connected_to y and x anterior_to y.
uberon
posteriorly_connected_to
posteriorly connected to
x posteriorly_connected_to y iff the posterior part of x is connected to y. i.e. x connected_to y and x anterior_to y.
http://purl.obolibrary.org/obo/uberon/docs/Connectivity-Design-Pattern
uberon
protects
protects
x proximally_connected_to y iff the proximal part of x is connected to y. i.e. x connected_to y and x distal_to y.
uberon
proximally_connected_to
proximally connected to
x proximally_connected_to y iff the proximal part of x is connected to y. i.e. x connected_to y and x distal_to y.
http://purl.obolibrary.org/obo/uberon/docs/Connectivity-Design-Pattern
c site_of p if c is the bearer of a disposition that is realized by a process that has p as part.
uberon
capable_of_has_part
site_of
site_of
uberon
subdivision_of
placeholder relation. X = 'subdivision of A' and subdivision_of some B means that X is the mereological sum of A and B
subdivision of
Number of protons in an atomic nucleus
has atomic number
has atomic number
has specified numeric value
A relation between a value specification and a number that quantifies it.
A range of 'real' might be better than 'float'. For now we follow 'has measurement value' until we can consider technical issues with SPARQL queries and reasoning.
PERSON: James A. Overton
OBI
has specified numeric value
has specified value
A relation between a value specification and a literal.
This is not an RDF/OWL object property. It is intended to link a value found in e.g. a database column of 'M' (the literal) to an instance of a value specification class, which can then be linked to indicate that this is about the biological gender of a human subject.
OBI
has specified value
The atomic mass (ma or m) is the mass of an atom. The protons and neutrons of the nucleus account for nearly all of the total mass of atoms, with the electrons and nuclear binding energy making minor contributions. It is measured in Daltons (unit).
mass number
entity
Entity
Julius Caesar
Verdi’s Requiem
the Second World War
your body mass index
BFO 2 Reference: In all areas of empirical inquiry we encounter general terms of two sorts. First are general terms which refer to universals or types:animaltuberculosissurgical procedurediseaseSecond, are general terms used to refer to groups of entities which instantiate a given universal but do not correspond to the extension of any subuniversal of that universal because there is nothing intrinsic to the entities in question by virtue of which they – and only they – are counted as belonging to the given group. Examples are: animal purchased by the Emperortuberculosis diagnosed on a Wednesdaysurgical procedure performed on a patient from Stockholmperson identified as candidate for clinical trial #2056-555person who is signatory of Form 656-PPVpainting by Leonardo da VinciSuch terms, which represent what are called ‘specializations’ in [81
Entity doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. For example Werner Ceusters 'portions of reality' include 4 sorts, entities (as BFO construes them), universals, configurations, and relations. It is an open question as to whether entities as construed in BFO will at some point also include these other portions of reality. See, for example, 'How to track absolutely everything' at http://www.referent-tracking.com/_RTU/papers/CeustersICbookRevised.pdf
An entity is anything that exists or has existed or will exist. (axiom label in BFO2 Reference: [001-001])
entity
Entity doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. For example Werner Ceusters 'portions of reality' include 4 sorts, entities (as BFO construes them), universals, configurations, and relations. It is an open question as to whether entities as construed in BFO will at some point also include these other portions of reality. See, for example, 'How to track absolutely everything' at http://www.referent-tracking.com/_RTU/papers/CeustersICbookRevised.pdf
per discussion with Barry Smith
An entity is anything that exists or has existed or will exist. (axiom label in BFO2 Reference: [001-001])
continuant
Continuant
An entity that exists in full at any time in which it exists at all, persists through time while maintaining its identity and has no temporal parts.
BFO 2 Reference: Continuant entities are entities which can be sliced to yield parts only along the spatial dimension, yielding for example the parts of your table which we call its legs, its top, its nails. ‘My desk stretches from the window to the door. It has spatial parts, and can be sliced (in space) in two. With respect to time, however, a thing is a continuant.’ [60, p. 240
Continuant doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. For example, in an expansion involving bringing in some of Ceuster's other portions of reality, questions are raised as to whether universals are continuants
A continuant is an entity that persists, endures, or continues to exist through time while maintaining its identity. (axiom label in BFO2 Reference: [008-002])
if b is a continuant and if, for some t, c has_continuant_part b at t, then c is a continuant. (axiom label in BFO2 Reference: [126-001])
if b is a continuant and if, for some t, cis continuant_part of b at t, then c is a continuant. (axiom label in BFO2 Reference: [009-002])
if b is a material entity, then there is some temporal interval (referred to below as a one-dimensional temporal region) during which b exists. (axiom label in BFO2 Reference: [011-002])
(forall (x y) (if (and (Continuant x) (exists (t) (continuantPartOfAt y x t))) (Continuant y))) // axiom label in BFO2 CLIF: [009-002]
(forall (x y) (if (and (Continuant x) (exists (t) (hasContinuantPartOfAt y x t))) (Continuant y))) // axiom label in BFO2 CLIF: [126-001]
(forall (x) (if (Continuant x) (Entity x))) // axiom label in BFO2 CLIF: [008-002]
(forall (x) (if (Material Entity x) (exists (t) (and (TemporalRegion t) (existsAt x t))))) // axiom label in BFO2 CLIF: [011-002]
BFO:0000002
continuant
continuant
Continuant doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. For example, in an expansion involving bringing in some of Ceuster's other portions of reality, questions are raised as to whether universals are continuants
A continuant is an entity that persists, endures, or continues to exist through time while maintaining its identity. (axiom label in BFO2 Reference: [008-002])
if b is a continuant and if, for some t, c has_continuant_part b at t, then c is a continuant. (axiom label in BFO2 Reference: [126-001])
if b is a continuant and if, for some t, cis continuant_part of b at t, then c is a continuant. (axiom label in BFO2 Reference: [009-002])
if b is a material entity, then there is some temporal interval (referred to below as a one-dimensional temporal region) during which b exists. (axiom label in BFO2 Reference: [011-002])
(forall (x y) (if (and (Continuant x) (exists (t) (continuantPartOfAt y x t))) (Continuant y))) // axiom label in BFO2 CLIF: [009-002]
(forall (x y) (if (and (Continuant x) (exists (t) (hasContinuantPartOfAt y x t))) (Continuant y))) // axiom label in BFO2 CLIF: [126-001]
(forall (x) (if (Continuant x) (Entity x))) // axiom label in BFO2 CLIF: [008-002]
(forall (x) (if (Material Entity x) (exists (t) (and (TemporalRegion t) (existsAt x t))))) // axiom label in BFO2 CLIF: [011-002]
occurrent
Occurrent
An entity that has temporal parts and that happens, unfolds or develops through time.
BFO 2 Reference: every occurrent that is not a temporal or spatiotemporal region is s-dependent on some independent continuant that is not a spatial region
BFO 2 Reference: s-dependence obtains between every process and its participants in the sense that, as a matter of necessity, this process could not have existed unless these or those participants existed also. A process may have a succession of participants at different phases of its unfolding. Thus there may be different players on the field at different times during the course of a football game; but the process which is the entire game s-depends_on all of these players nonetheless. Some temporal parts of this process will s-depend_on on only some of the players.
Occurrent doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. An example would be the sum of a process and the process boundary of another process.
Simons uses different terminology for relations of occurrents to regions: Denote the spatio-temporal location of a given occurrent e by 'spn[e]' and call this region its span. We may say an occurrent is at its span, in any larger region, and covers any smaller region. Now suppose we have fixed a frame of reference so that we can speak not merely of spatio-temporal but also of spatial regions (places) and temporal regions (times). The spread of an occurrent, (relative to a frame of reference) is the space it exactly occupies, and its spell is likewise the time it exactly occupies. We write 'spr[e]' and `spl[e]' respectively for the spread and spell of e, omitting mention of the frame.
processual entity (BFO)
An occurrent is an entity that unfolds itself in time or it is the instantaneous boundary of such an entity (for example a beginning or an ending) or it is a temporal or spatiotemporal region which such an entity occupies_temporal_region or occupies_spatiotemporal_region. (axiom label in BFO2 Reference: [077-002])
Every occurrent occupies_spatiotemporal_region some spatiotemporal region. (axiom label in BFO2 Reference: [108-001])
b is an occurrent entity iff b is an entity that has temporal parts. (axiom label in BFO2 Reference: [079-001])
(forall (x) (if (Occurrent x) (exists (r) (and (SpatioTemporalRegion r) (occupiesSpatioTemporalRegion x r))))) // axiom label in BFO2 CLIF: [108-001]
(forall (x) (iff (Occurrent x) (and (Entity x) (exists (y) (temporalPartOf y x))))) // axiom label in BFO2 CLIF: [079-001]
occurrent
Occurrent doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. An example would be the sum of a process and the process boundary of another process.
per discussion with Barry Smith
Simons uses different terminology for relations of occurrents to regions: Denote the spatio-temporal location of a given occurrent e by 'spn[e]' and call this region its span. We may say an occurrent is at its span, in any larger region, and covers any smaller region. Now suppose we have fixed a frame of reference so that we can speak not merely of spatio-temporal but also of spatial regions (places) and temporal regions (times). The spread of an occurrent, (relative to a frame of reference) is the space it exactly occupies, and its spell is likewise the time it exactly occupies. We write 'spr[e]' and `spl[e]' respectively for the spread and spell of e, omitting mention of the frame.
An occurrent is an entity that unfolds itself in time or it is the instantaneous boundary of such an entity (for example a beginning or an ending) or it is a temporal or spatiotemporal region which such an entity occupies_temporal_region or occupies_spatiotemporal_region. (axiom label in BFO2 Reference: [077-002])
Every occurrent occupies_spatiotemporal_region some spatiotemporal region. (axiom label in BFO2 Reference: [108-001])
b is an occurrent entity iff b is an entity that has temporal parts. (axiom label in BFO2 Reference: [079-001])
(forall (x) (if (Occurrent x) (exists (r) (and (SpatioTemporalRegion r) (occupiesSpatioTemporalRegion x r))))) // axiom label in BFO2 CLIF: [108-001]
(forall (x) (iff (Occurrent x) (and (Entity x) (exists (y) (temporalPartOf y x))))) // axiom label in BFO2 CLIF: [079-001]
ic
IndependentContinuant
a chair
a chair
a heart
a heart
a leg
a leg
a molecule
a molecule
a spatial region
a spatial region
an atom
an atom
an orchestra.
an orchestra.
an organism
an organism
the bottom right portion of a human torso
the bottom right portion of a human torso
the interior of your mouth
the interior of your mouth
A continuant that is a bearer of quality and realizable entity entities, in which other entities inhere and which itself cannot inhere in anything.
b is an independent continuant = Def. b is a continuant which is such that there is no c and no t such that b s-depends_on c at t. (axiom label in BFO2 Reference: [017-002])
b is an independent continuant = Def. b is a continuant which is such that there is no c and no t such that b s-depends_on c at t. (axiom label in BFO2 Reference: [017-002])
http://purl.obolibrary.org/obo/bfo/2019-08-26/bfo.owl
anatomical entity (BFO)
For any independent continuant b and any time t there is some spatial region r such that b is located_in r at t. (axiom label in BFO2 Reference: [134-001])
For any independent continuant b and any time t there is some spatial region r such that b is located_in r at t. (axiom label in BFO2 Reference: [134-001])
For every independent continuant b and time t during the region of time spanned by its life, there are entities which s-depends_on b during t. (axiom label in BFO2 Reference: [018-002])
For every independent continuant b and time t during the region of time spanned by its life, there are entities which s-depends_on b during t. (axiom label in BFO2 Reference: [018-002])
(forall (x t) (if (IndependentContinuant x) (exists (r) (and (SpatialRegion r) (locatedInAt x r t))))) // axiom label in BFO2 CLIF: [134-001]
(forall (x t) (if (and (IndependentContinuant x) (existsAt x t)) (exists (y) (and (Entity y) (specificallyDependsOnAt y x t))))) // axiom label in BFO2 CLIF: [018-002]
(iff (IndependentContinuant a) (and (Continuant a) (not (exists (b t) (specificallyDependsOnAt a b t))))) // axiom label in BFO2 CLIF: [017-002]
BFO:0000004
A continuant that is a bearer of quality and realizable entity entities, in which other entities inhere and which itself cannot inhere in anything.
independent continuant
independent continuant
b is an independent continuant = Def. b is a continuant which is such that there is no c and no t such that b s-depends_on c at t. (axiom label in BFO2 Reference: [017-002])
For any independent continuant b and any time t there is some spatial region r such that b is located_in r at t. (axiom label in BFO2 Reference: [134-001])
For every independent continuant b and time t during the region of time spanned by its life, there are entities which s-depends_on b during t. (axiom label in BFO2 Reference: [018-002])
(forall (x t) (if (IndependentContinuant x) (exists (r) (and (SpatialRegion r) (locatedInAt x r t))))) // axiom label in BFO2 CLIF: [134-001]
(forall (x t) (if (and (IndependentContinuant x) (existsAt x t)) (exists (y) (and (Entity y) (specificallyDependsOnAt y x t))))) // axiom label in BFO2 CLIF: [018-002]
(iff (IndependentContinuant a) (and (Continuant a) (not (exists (b t) (specificallyDependsOnAt a b t))))) // axiom label in BFO2 CLIF: [017-002]
s-region
SpatialRegion
BFO 2 Reference: Spatial regions do not participate in processes.
Spatial region doesn't have a closure axiom because the subclasses don't exhaust all possibilites. An example would be the union of a spatial point and a spatial line that doesn't overlap the point, or two spatial lines that intersect at a single point. In both cases the resultant spatial region is neither 0-dimensional, 1-dimensional, 2-dimensional, or 3-dimensional.
A spatial region is a continuant entity that is a continuant_part_of spaceR as defined relative to some frame R. (axiom label in BFO2 Reference: [035-001])
All continuant parts of spatial regions are spatial regions. (axiom label in BFO2 Reference: [036-001])
(forall (x y t) (if (and (SpatialRegion x) (continuantPartOfAt y x t)) (SpatialRegion y))) // axiom label in BFO2 CLIF: [036-001]
(forall (x) (if (SpatialRegion x) (Continuant x))) // axiom label in BFO2 CLIF: [035-001]
spatial region
Spatial region doesn't have a closure axiom because the subclasses don't exhaust all possibilites. An example would be the union of a spatial point and a spatial line that doesn't overlap the point, or two spatial lines that intersect at a single point. In both cases the resultant spatial region is neither 0-dimensional, 1-dimensional, 2-dimensional, or 3-dimensional.
per discussion with Barry Smith
A spatial region is a continuant entity that is a continuant_part_of spaceR as defined relative to some frame R. (axiom label in BFO2 Reference: [035-001])
All continuant parts of spatial regions are spatial regions. (axiom label in BFO2 Reference: [036-001])
(forall (x y t) (if (and (SpatialRegion x) (continuantPartOfAt y x t)) (SpatialRegion y))) // axiom label in BFO2 CLIF: [036-001]
(forall (x) (if (SpatialRegion x) (Continuant x))) // axiom label in BFO2 CLIF: [035-001]
process
Process
a process of cell-division, \ a beating of the heart
a process of meiosis
a process of sleeping
the course of a disease
the flight of a bird
the life of an organism
your process of aging.
A process is an entity that exists in time by occurring or happening, has temporal parts and always involves and depends on some entity during the time it occurs.
An occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t.
p is a process = Def. p is an occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t. (axiom label in BFO2 Reference: [083-003])
BFO 2 Reference: The realm of occurrents is less pervasively marked by the presence of natural units than is the case in the realm of independent continuants. Thus there is here no counterpart of ‘object’. In BFO 1.0 ‘process’ served as such a counterpart. In BFO 2.0 ‘process’ is, rather, the occurrent counterpart of ‘material entity’. Those natural – as contrasted with engineered, which here means: deliberately executed – units which do exist in the realm of occurrents are typically either parasitic on the existence of natural units on the continuant side, or they are fiat in nature. Thus we can count lives; we can count football games; we can count chemical reactions performed in experiments or in chemical manufacturing. We cannot count the processes taking place, for instance, in an episode of insect mating behavior.Even where natural units are identifiable, for example cycles in a cyclical process such as the beating of a heart or an organism’s sleep/wake cycle, the processes in question form a sequence with no discontinuities (temporal gaps) of the sort that we find for instance where billiard balls or zebrafish or planets are separated by clear spatial gaps. Lives of organisms are process units, but they too unfold in a continuous series from other, prior processes such as fertilization, and they unfold in turn in continuous series of post-life processes such as post-mortem decay. Clear examples of boundaries of processes are almost always of the fiat sort (midnight, a time of death as declared in an operating theater or on a death certificate, the initiation of a state of war)
James Malone
(iff (Process a) (and (Occurrent a) (exists (b) (properTemporalPartOf b a)) (exists (c t) (and (MaterialEntity c) (specificallyDependsOnAt a c t))))) // axiom label in BFO2 CLIF: [083-003]
http://www.ebi.ac.uk/efo/EFO_0001433
true
An occurrent [span:Occurrent] that exists in time by occurring or happening, has temporal parts and always involves and depends on some entity.
http://www.ifomis.org/bfo/1.1/span#ProcessualEntity
NCIt:C29862
SNOMEDCT:415178003
BFO:0000015
An occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t.
process
process
p is a process = Def. p is an occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t. (axiom label in BFO2 Reference: [083-003])
(iff (Process a) (and (Occurrent a) (exists (b) (properTemporalPartOf b a)) (exists (c t) (and (MaterialEntity c) (specificallyDependsOnAt a c t))))) // axiom label in BFO2 CLIF: [083-003]
disposition
Disposition
For example, the disposition of vegetables to decay when not refrigerated, the disposition of blood to coagulate, the disposition of a patient with a weakened immune system to contract disease.
an atom of element X has the disposition to decay to an atom of element Y
certain people have a predisposition to colon cancer
children are innately disposed to categorize objects in certain ways.
the cell wall is disposed to filter chemicals in endocytosis and exocytosis
A disposition is an entity that causes a specific process or transformation in an entity in which it inheres, under specific circumstances and in conjunction with the laws of nature. For example, the disposition of vegetables to decay when not refrigerated, the disposition of blood to coagulate, the disposition of a patient with a weakened immune system to contract disease.
BFO 2 Reference: Dispositions exist along a strength continuum. Weaker forms of disposition are realized in only a fraction of triggering cases. These forms occur in a significant number of cases of a similar type.
James Malone modified from original
b is a disposition means: b is a realizable entity & b’s bearer is some material entity & b is such that if it ceases to exist, then its bearer is physically changed, & b’s realization occurs when and because this bearer is in some special physical circumstances, & this realization occurs in virtue of the bearer’s physical make-up. (axiom label in BFO2 Reference: [062-002])
If b is a realizable entity then for all t at which b exists, b s-depends_on some material entity at t. (axiom label in BFO2 Reference: [063-002])
(forall (x t) (if (and (RealizableEntity x) (existsAt x t)) (exists (y) (and (MaterialEntity y) (specificallyDepends x y t))))) // axiom label in BFO2 CLIF: [063-002]
(forall (x) (if (Disposition x) (and (RealizableEntity x) (exists (y) (and (MaterialEntity y) (bearerOfAt x y t)))))) // axiom label in BFO2 CLIF: [062-002]
disease property
http://www.ebi.ac.uk/efo/EFO_0001438
true
A realizable entity [snap:RealizableEntity] that essentially causes a specific process or transformation in the object [snap:Object] in which it inheres, under specific circumstances and in conjunction with the laws of nature. A general formula for dispositions is: X (object [snap:Object] has the disposition D to (transform, initiate a process) R under conditions C.
http://www.ifomis.org/bfo/1.1/snap#Disposition
NCIt:C41205
BFO:0000016
disposition
disposition
b is a disposition means: b is a realizable entity & b’s bearer is some material entity & b is such that if it ceases to exist, then its bearer is physically changed, & b’s realization occurs when and because this bearer is in some special physical circumstances, & this realization occurs in virtue of the bearer’s physical make-up. (axiom label in BFO2 Reference: [062-002])
If b is a realizable entity then for all t at which b exists, b s-depends_on some material entity at t. (axiom label in BFO2 Reference: [063-002])
(forall (x t) (if (and (RealizableEntity x) (existsAt x t)) (exists (y) (and (MaterialEntity y) (specificallyDepends x y t))))) // axiom label in BFO2 CLIF: [063-002]
(forall (x) (if (Disposition x) (and (RealizableEntity x) (exists (y) (and (MaterialEntity y) (bearerOfAt x y t)))))) // axiom label in BFO2 CLIF: [062-002]
realizable
RealizableEntity
the disposition of this piece of metal to conduct electricity.
the disposition of your blood to coagulate
the function of your reproductive organs
the role of being a doctor
the role of this boundary to delineate where Utah and Colorado meet
A specifically dependent continuant that inheres in continuant entities and are not exhibited in full at every time in which it inheres in an entity or group of entities. The exhibition or actualization of a realizable entity is a particular manifestation, functioning or process that occurs under certain circumstances.
https://orcid.org/0000-0001-8815-0078
To say that b is a realizable entity is to say that b is a specifically dependent continuant that inheres in some independent continuant which is not a spatial region and is of a type instances of which are realized in processes of a correlated type. (axiom label in BFO2 Reference: [058-002])
All realizable dependent continuants have independent continuants that are not spatial regions as their bearers. (axiom label in BFO2 Reference: [060-002])
(forall (x t) (if (RealizableEntity x) (exists (y) (and (IndependentContinuant y) (not (SpatialRegion y)) (bearerOfAt y x t))))) // axiom label in BFO2 CLIF: [060-002]
(forall (x) (if (RealizableEntity x) (and (SpecificallyDependentContinuant x) (exists (y) (and (IndependentContinuant y) (not (SpatialRegion y)) (inheresIn x y)))))) // axiom label in BFO2 CLIF: [058-002]
BFO:0000017
realizable entity
realizable_entity
To say that b is a realizable entity is to say that b is a specifically dependent continuant that inheres in some independent continuant which is not a spatial region and is of a type instances of which are realized in processes of a correlated type. (axiom label in BFO2 Reference: [058-002])
All realizable dependent continuants have independent continuants that are not spatial regions as their bearers. (axiom label in BFO2 Reference: [060-002])
(forall (x t) (if (RealizableEntity x) (exists (y) (and (IndependentContinuant y) (not (SpatialRegion y)) (bearerOfAt y x t))))) // axiom label in BFO2 CLIF: [060-002]
(forall (x) (if (RealizableEntity x) (and (SpecificallyDependentContinuant x) (exists (y) (and (IndependentContinuant y) (not (SpatialRegion y)) (inheresIn x y)))))) // axiom label in BFO2 CLIF: [058-002]
quality
Quality
the ambient temperature of this portion of air
the color of a tomato
the length of the circumference of your waist
the mass of this piece of gold.
the shape of your nose
the shape of your nostril
A quality is an entity that describes some aspect which is intrinsic to that particular object and is dependent on or more material entities in which it inheres in or is borne by. Example the color of a tomato, the ambient temperature of air, the circumference of a waist, the shape of a nose, the mass of a piece of gold, the weight of a chimpanzee
James Malone
a quality is a specifically dependent continuant that, in contrast to roles and dispositions, does not require any further process in order to be realized. (axiom label in BFO2 Reference: [055-001])
If an entity is a quality at any time that it exists, then it is a quality at every time that it exists. (axiom label in BFO2 Reference: [105-001])
(forall (x) (if (Quality x) (SpecificallyDependentContinuant x))) // axiom label in BFO2 CLIF: [055-001]
(forall (x) (if (exists (t) (and (existsAt x t) (Quality x))) (forall (t_1) (if (existsAt x t_1) (Quality x))))) // axiom label in BFO2 CLIF: [105-001]
http://www.ebi.ac.uk/efo/EFO_0001436
true
A specifically dependent continuant [snap:SpecificallyDependentContinuant] that is exhibited if it inheres in an entity or entities at all (a categorical property).
http://www.ifomis.org/bfo/1.1/snap#Quality
NCIt:C25283
SNOMEDCT:263496004
quality
quality
a quality is a specifically dependent continuant that, in contrast to roles and dispositions, does not require any further process in order to be realized. (axiom label in BFO2 Reference: [055-001])
If an entity is a quality at any time that it exists, then it is a quality at every time that it exists. (axiom label in BFO2 Reference: [105-001])
(forall (x) (if (Quality x) (SpecificallyDependentContinuant x))) // axiom label in BFO2 CLIF: [055-001]
(forall (x) (if (exists (t) (and (existsAt x t) (Quality x))) (forall (t_1) (if (existsAt x t_1) (Quality x))))) // axiom label in BFO2 CLIF: [105-001]
sdc
SpecificallyDependentContinuant
Reciprocal specifically dependent continuants: the function of this key to open this lock and the mutually dependent disposition of this lock: to be opened by this key
of one-sided specifically dependent continuants: the mass of this tomato
of relational dependent continuants (multiple bearers): John’s love for Mary, the ownership relation between John and this statue, the relation of authority between John and his subordinates.
the disposition of this fish to decay
the function of this heart: to pump blood
the mutual dependence of proton donors and acceptors in chemical reactions [79
the mutual dependence of the role predator and the role prey as played by two organisms in a given interaction
the pink color of a medium rare piece of grilled filet mignon at its center
the role of being a doctor
the shape of this hole.
the smell of this portion of mozzarella
A continuant that inheres in or is borne by other entities. Every instance of A requires some specific instance of B which must always be the same.
An experimental factor which is a property or characteristic of some other entity. For example, the mouse has the colour white.
b is a relational specifically dependent continuant = Def. b is a specifically dependent continuant and there are n > 1 independent continuants c1, … cn which are not spatial regions are such that for all 1 i < j n, ci and cj share no common parts, are such that for each 1 i n, b s-depends_on ci at every time t during the course of b’s existence (axiom label in BFO2 Reference: [131-004])
b is a specifically dependent continuant = Def. b is a continuant & there is some independent continuant c which is not a spatial region and which is such that b s-depends_on c at every time t during the course of b’s existence. (axiom label in BFO2 Reference: [050-003])
Specifically dependent continuant doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. We're not sure what else will develop here, but for example there are questions such as what are promises, obligation, etc.
James Malone
Sirarat Sarntivijai
(iff (RelationalSpecificallyDependentContinuant a) (and (SpecificallyDependentContinuant a) (forall (t) (exists (b c) (and (not (SpatialRegion b)) (not (SpatialRegion c)) (not (= b c)) (not (exists (d) (and (continuantPartOfAt d b t) (continuantPartOfAt d c t)))) (specificallyDependsOnAt a b t) (specificallyDependsOnAt a c t)))))) // axiom label in BFO2 CLIF: [131-004]
(iff (SpecificallyDependentContinuant a) (and (Continuant a) (forall (t) (if (existsAt a t) (exists (b) (and (IndependentContinuant b) (not (SpatialRegion b)) (specificallyDependsOnAt a b t))))))) // axiom label in BFO2 CLIF: [050-003]
sample characteristic
http://www.ebi.ac.uk/efo/EFO_0001443
true
A continuant [snap:Continuant] that inheres in or is borne by other entities. Every instance of A requires some specific instance of B which must always be the same.
http://www.ifomis.org/bfo/1.1/snap#SpecificallyDependentContinuant
BFO:0000020
SpecificallyDependentContinuant
specifically dependent continuant
BFO:0000020
A continuant that inheres in or is borne by other entities. Every instance of A requires some specific instance of B which must always be the same.
material property
specifically dependent continuant
specifically dependent continuant
b is a relational specifically dependent continuant = Def. b is a specifically dependent continuant and there are n > 1 independent continuants c1, … cn which are not spatial regions are such that for all 1 i < j n, ci and cj share no common parts, are such that for each 1 i n, b s-depends_on ci at every time t during the course of b’s existence (axiom label in BFO2 Reference: [131-004])
b is a specifically dependent continuant = Def. b is a continuant & there is some independent continuant c which is not a spatial region and which is such that b s-depends_on c at every time t during the course of b’s existence. (axiom label in BFO2 Reference: [050-003])
Specifically dependent continuant doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. We're not sure what else will develop here, but for example there are questions such as what are promises, obligation, etc.
per discussion with Barry Smith
(iff (RelationalSpecificallyDependentContinuant a) (and (SpecificallyDependentContinuant a) (forall (t) (exists (b c) (and (not (SpatialRegion b)) (not (SpatialRegion c)) (not (= b c)) (not (exists (d) (and (continuantPartOfAt d b t) (continuantPartOfAt d c t)))) (specificallyDependsOnAt a b t) (specificallyDependsOnAt a c t)))))) // axiom label in BFO2 CLIF: [131-004]
(iff (SpecificallyDependentContinuant a) (and (Continuant a) (forall (t) (if (existsAt a t) (exists (b) (and (IndependentContinuant b) (not (SpatialRegion b)) (specificallyDependsOnAt a b t))))))) // axiom label in BFO2 CLIF: [050-003]
role
Role
For example, the role of a person as a surgeon, the role of an artificial heart in pumping blood, the role of a chemical compound in an experiment, the role of a drug in the treatment of a disease.
John’s role of husband to Mary is dependent on Mary’s role of wife to John, and both are dependent on the object aggregate comprising John and Mary as member parts joined together through the relational quality of being married.
the priest role
the role of a boundary to demarcate two neighboring administrative territories
the role of a building in serving as a military target
the role of a stone in marking a property boundary
the role of subject in a clinical trial
the student role
A realizable entity the manifestation of which brings about some result or end that is not essential to a continuant in virtue of the kind of thing that it is but that can be served or participated in by that kind of continuant in some kinds of natural, social or institutional contexts.
A role is an entity which is borne in a material entity in some kinds of natural, social or institutional contexts, but which is not essential to the fundamental definition of that material entity (i.e. the material entity exists with or without the role). For example, the role of a person as a surgeon, the role of an artificial heart in pumping blood, the role of a chemical compound in an experiment, the role of a drug in the treatment of a disease.
BFO 2 Reference: One major family of examples of non-rigid universals involves roles, and ontologies developed for corresponding administrative purposes may consist entirely of representatives of entities of this sort. Thus ‘professor’, defined as follows,b instance_of professor at t =Def. there is some c, c instance_of professor role & c inheres_in b at t.denotes a non-rigid universal and so also do ‘nurse’, ‘student’, ‘colonel’, ‘taxpayer’, and so forth. (These terms are all, in the jargon of philosophy, phase sortals.) By using role terms in definitions, we can create a BFO conformant treatment of such entities drawing on the fact that, while an instance of professor may be simultaneously an instance of trade union member, no instance of the type professor role is also (at any time) an instance of the type trade union member role (any more than any instance of the type color is at any time an instance of the type length).If an ontology of employment positions should be defined in terms of roles following the above pattern, this enables the ontology to do justice to the fact that individuals instantiate the corresponding universals – professor, sergeant, nurse – only during certain phases in their lives.
James Malone
b is a role means: b is a realizable entity & b exists because there is some single bearer that is in some special physical, social, or institutional set of circumstances in which this bearer does not have to be& b is not such that, if it ceases to exist, then the physical make-up of the bearer is thereby changed. (axiom label in BFO2 Reference: [061-001])
(forall (x) (if (Role x) (RealizableEntity x))) // axiom label in BFO2 CLIF: [061-001]
http://www.ebi.ac.uk/efo/EFO_0001440
true
A realizable entity [snap:RealizableEntity] the manifestation of which brings about some result or end that is not essential to a continuant [snap:Continuant] in virtue of the kind of thing that it is but that can be served or participated in by that kind of continuant [snap:Continuant] in some kinds of natural, social or institutional contexts.
http://www.ifomis.org/bfo/1.1/snap#Role
MeSH:D012380
NCIt:C48835
BFO:0000023
role
role
b is a role means: b is a realizable entity & b exists because there is some single bearer that is in some special physical, social, or institutional set of circumstances in which this bearer does not have to be& b is not such that, if it ceases to exist, then the physical make-up of the bearer is thereby changed. (axiom label in BFO2 Reference: [061-001])
(forall (x) (if (Role x) (RealizableEntity x))) // axiom label in BFO2 CLIF: [061-001]
fiat object
fiat object part
object-aggregate
ObjectAggregate
a collection of cells in a blood biobank.
a swarm of bees is an aggregate of members who are linked together through natural bonds
a symphony orchestra
an organization is an aggregate whose member parts have roles of specific types (for example in a jazz band, a chess club, a football team)
defined by fiat: the aggregate of members of an organization
defined through physical attachment: the aggregate of atoms in a lump of granite
defined through physical containment: the aggregate of molecules of carbon dioxide in a sealed container
defined via attributive delimitations such as: the patients in this hospital
the aggregate of bearings in a constant velocity axle joint
the aggregate of blood cells in your body
the nitrogen atoms in the atmosphere
the restaurants in Palo Alto
your collection of Meissen ceramic plates.
An entity a is an object aggregate if and only if there is a mutually exhaustive and pairwise disjoint partition of a into objects
BFO 2 Reference: object aggregates may gain and lose parts while remaining numerically identical (one and the same individual) over time. This holds both for aggregates whose membership is determined naturally (the aggregate of cells in your body) and aggregates determined by fiat (a baseball team, a congressional committee).
ISBN:978-3-938793-98-5pp124-158#Thomas Bittner and Barry Smith, 'A Theory of Granular Partitions', in K. Munn and B. Smith (eds.), Applied Ontology: An Introduction, Frankfurt/Lancaster: ontos, 2008, 125-158.
b is an object aggregate means: b is a material entity consisting exactly of a plurality of objects as member_parts at all times at which b exists. (axiom label in BFO2 Reference: [025-004])
(forall (x) (if (ObjectAggregate x) (and (MaterialEntity x) (forall (t) (if (existsAt x t) (exists (y z) (and (Object y) (Object z) (memberPartOfAt y x t) (memberPartOfAt z x t) (not (= y z)))))) (not (exists (w t_1) (and (memberPartOfAt w x t_1) (not (Object w)))))))) // axiom label in BFO2 CLIF: [025-004]
object aggregate
An entity a is an object aggregate if and only if there is a mutually exhaustive and pairwise disjoint partition of a into objects
An entity a is an object aggregate if and only if there is a mutually exhaustive and pairwise disjoint partition of a into objects
ISBN:978-3-938793-98-5pp124-158#Thomas Bittner and Barry Smith, 'A Theory of Granular Partitions', in K. Munn and B. Smith (eds.), Applied Ontology: An Introduction, Frankfurt/Lancaster: ontos, 2008, 125-158.
b is an object aggregate means: b is a material entity consisting exactly of a plurality of objects as member_parts at all times at which b exists. (axiom label in BFO2 Reference: [025-004])
(forall (x) (if (ObjectAggregate x) (and (MaterialEntity x) (forall (t) (if (existsAt x t) (exists (y z) (and (Object y) (Object z) (memberPartOfAt y x t) (memberPartOfAt z x t) (not (= y z)))))) (not (exists (w t_1) (and (memberPartOfAt w x t_1) (not (Object w)))))))) // axiom label in BFO2 CLIF: [025-004]
object
gdc
GenericallyDependentContinuant
The entries in your database are patterns instantiated as quality instances in your hard drive. The database itself is an aggregate of such patterns. When you create the database you create a particular instance of the generically dependent continuant type database. Each entry in the database is an instance of the generically dependent continuant type IAO: information content entity.
the pdf file on your laptop, the pdf file that is a copy thereof on my laptop
the sequence of this protein molecule; the sequence that is a copy thereof in that protein molecule.
A continuant that is dependent on one or other independent continuant bearers. For every instance of A requires some instance of (an independent continuant type) B but which instance of B serves can change from time to time.
b is a generically dependent continuant = Def. b is a continuant that g-depends_on one or more other entities. (axiom label in BFO2 Reference: [074-001])
(iff (GenericallyDependentContinuant a) (and (Continuant a) (exists (b t) (genericallyDependsOnAt a b t)))) // axiom label in BFO2 CLIF: [074-001]
BFO:0000031
A continuant that is dependent on one or other independent continuant bearers. For every instance of A requires some instance of (an independent continuant type) B but which instance of B serves can change from time to time.
generically dependent continuant
generically dependent continuant
b is a generically dependent continuant = Def. b is a continuant that g-depends_on one or more other entities. (axiom label in BFO2 Reference: [074-001])
(iff (GenericallyDependentContinuant a) (and (Continuant a) (exists (b t) (genericallyDependsOnAt a b t)))) // axiom label in BFO2 CLIF: [074-001]
function
Function
the function of a hammer to drive in nails
the function of a heart pacemaker to regulate the beating of a heart through electricity
the function of amylase in saliva to break down starch into sugar
BFO 2 Reference: In the past, we have distinguished two varieties of function, artifactual function and biological function. These are not asserted subtypes of BFO:function however, since the same function – for example: to pump, to transport – can exist both in artifacts and in biological entities. The asserted subtypes of function that would be needed in order to yield a separate monoheirarchy are not artifactual function, biological function, etc., but rather transporting function, pumping function, etc.
A function is a disposition that exists in virtue of the bearer’s physical make-up and this physical make-up is something the bearer possesses because it came into being, either through evolution (in the case of natural biological entities) or through intentional design (in the case of artifacts), in order to realize processes of a certain sort. (axiom label in BFO2 Reference: [064-001])
(forall (x) (if (Function x) (Disposition x))) // axiom label in BFO2 CLIF: [064-001]
function
A function is a disposition that exists in virtue of the bearer’s physical make-up and this physical make-up is something the bearer possesses because it came into being, either through evolution (in the case of natural biological entities) or through intentional design (in the case of artifacts), in order to realize processes of a certain sort. (axiom label in BFO2 Reference: [064-001])
(forall (x) (if (Function x) (Disposition x))) // axiom label in BFO2 CLIF: [064-001]
material
MaterialEntity
material entity
A heart, a human, a fly, a microarray.
a flame
a forest fire
a human being
a hurricane
a photon
a puff of smoke
a sea wave
a tornado
an aggregate of human beings.
an energy wave
an epidemic
the undetached arm of a human being
A material entity is an entity that exists in full during the length of time of its existence, persists through this time while maintaining its identity and has no temporal parts. For example a heart, a human, a fly, a microarray.
An independent continuant that is spatially extended whose identity is independent of that of other entities and can be maintained through time.
BFO 2 Reference: Material entities (continuants) can preserve their identity even while gaining and losing material parts. Continuants are contrasted with occurrents, which unfold themselves in successive temporal parts or phases [60
BFO 2 Reference: Object, Fiat Object Part and Object Aggregate are not intended to be exhaustive of Material Entity. Users are invited to propose new subcategories of Material Entity.
BFO 2 Reference: ‘Matter’ is intended to encompass both mass and energy (we will address the ontological treatment of portions of energy in a later version of BFO). A portion of matter is anything that includes elementary particles among its proper or improper parts: quarks and leptons, including electrons, as the smallest particles thus far discovered; baryons (including protons and neutrons) at a higher level of granularity; atoms and molecules at still higher levels, forming the cells, organs, organisms and other material entities studied by biologists, the portions of rock studied by geologists, the fossils studied by paleontologists, and so on.Material entities are three-dimensional entities (entities extended in three spatial dimensions), as contrasted with the processes in which they participate, which are four-dimensional entities (entities extended also along the dimension of time).According to the FMA, material entities may have immaterial entities as parts – including the entities identified below as sites; for example the interior (or ‘lumen’) of your small intestine is a part of your body. BFO 2.0 embodies a decision to follow the FMA here.
Elucidation: An independent continuant that is spatially extended whose identity is independent of that of other entities and can be maintained through time.
James Malone
A material entity is an independent continuant that has some portion of matter as proper or improper continuant part. (axiom label in BFO2 Reference: [019-002])
Every entity which has a material entity as continuant part is a material entity. (axiom label in BFO2 Reference: [020-002])
every entity of which a material entity is continuant part is also a material entity. (axiom label in BFO2 Reference: [021-002])
(forall (x) (if (MaterialEntity x) (IndependentContinuant x))) // axiom label in BFO2 CLIF: [019-002]
(forall (x) (if (and (Entity x) (exists (y t) (and (MaterialEntity y) (continuantPartOfAt x y t)))) (MaterialEntity x))) // axiom label in BFO2 CLIF: [021-002]
(forall (x) (if (and (Entity x) (exists (y t) (and (MaterialEntity y) (continuantPartOfAt y x t)))) (MaterialEntity x))) // axiom label in BFO2 CLIF: [020-002]
sample factor
http://www.ebi.ac.uk/efo/EFO_0001434
true
An independent continuant [snap:IndependentContinuant] that is spatially extended whose identity is independent of that of other entities and can be maintained through time. Note: Material entity [snap:MaterialEntity] subsumes object [snap:Object], fiat object part [snap:FiatObjectPart], and object aggregate [snap:ObjectAggregate], which assume a three level theory of granularity, which is inadequate for some domains, such as biology.
http://www.ifomis.org/bfo/1.1/snap#MaterialEntity
material type
BFO:0000040
material entity
material entity
A material entity is an independent continuant that has some portion of matter as proper or improper continuant part. (axiom label in BFO2 Reference: [019-002])
Every entity which has a material entity as continuant part is a material entity. (axiom label in BFO2 Reference: [020-002])
every entity of which a material entity is continuant part is also a material entity. (axiom label in BFO2 Reference: [021-002])
(forall (x) (if (MaterialEntity x) (IndependentContinuant x))) // axiom label in BFO2 CLIF: [019-002]
(forall (x) (if (and (Entity x) (exists (y t) (and (MaterialEntity y) (continuantPartOfAt x y t)))) (MaterialEntity x))) // axiom label in BFO2 CLIF: [021-002]
(forall (x) (if (and (Entity x) (exists (y t) (and (MaterialEntity y) (continuantPartOfAt y x t)))) (MaterialEntity x))) // axiom label in BFO2 CLIF: [020-002]
immaterial
ImmaterialEntity
BFO 2 Reference: Immaterial entities are divided into two subgroups:boundaries and sites, which bound, or are demarcated in relation, to material entities, and which can thus change location, shape and size and as their material hosts move or change shape or size (for example: your nasal passage; the hold of a ship; the boundary of Wales (which moves with the rotation of the Earth) [38, 7, 10
immaterial entity
history
History
A history is a process that is the sum of the totality of processes taking place in the spatiotemporal region occupied by a material entity or site, including processes on the surface of the entity or within the cavities to which it serves as host. (axiom label in BFO2 Reference: [138-001])
history
A history is a process that is the sum of the totality of processes taking place in the spatiotemporal region occupied by a material entity or site, including processes on the surface of the entity or within the cavities to which it serves as host. (axiom label in BFO2 Reference: [138-001])
Material anatomical entity that is a member of an individual species or is a viral or viroid particle.
organism or virus
Melissa Haendel
9/18/11
organism or virus or viroid
Elementary particle not affected by the strong force having a spin 1/2, a negative elementary charge and a rest mass of 0.000548579903(13) u, or 0.51099906(15) MeV.
-1
0.000548579903
0.0
KEGG:C05359
PMID:21614077
Wikipedia:Electron
electron
chebi_ontology
Elektron
beta
beta(-)
beta-particle
e
e(-)
e-
negatron
CHEBI:10545
electron
PMID:21614077
Europe PMC
electron
ChEBI
electron
IUPAC
electron
KEGG_COMPOUND
Elektron
ChEBI
beta
IUPAC
beta(-)
ChEBI
beta-particle
IUPAC
e
IUPAC
e(-)
UniProt
e-
KEGG_COMPOUND
negatron
IUPAC
A class of carbonyl compound encompassing dicarboxylic acids and any derivatives obtained by substitution of either one or both of the carboxy hydrogens.
chebi_ontology
dicarboxylic acids and derivatives
CHEBI:131927
dicarboxylic acids and O-substituted derivatives
dicarboxylic acids and derivatives
ChEBI
A carbohydrate acid derivative anion obtained by deprotonation of the carboxy groups of hyaluronic acid; major species at pH 7.3.
chebi_ontology
hyaluronan
hyaluronate polyanion
CHEBI:132153
hyaluronate
hyaluronan
UniProt
hyaluronate polyanion
ChEBI
Any steroid that has beta-configuration at position 5.
chebi_ontology
5beta steroids
5beta-steroid
5beta-steroids
CHEBI:136889
5beta steroid
5beta steroids
ChEBI
5beta-steroid
ChEBI
5beta-steroids
ChEBI
An atom of an element that exhibits properties that are between those of metals and nonmetals, or that has a mixture of them. The term generally includes boron, silicon, germanium, arsenic, antimony, and tellurium, while carbon, aluminium, selenium, polonium, and astatine are less commonly included.
Wikipedia:Metalloid
chebi_ontology
metalloid
metalloids
CHEBI:137980
metalloid atom
metalloid
ChEBI
metalloids
ChEBI
A Bronsted acid derived from one or more inorganic compounds. Inorganic acids (also known as mineral acids) form hydrons and conjugate base ions when dissolved in water.
Wikipedia:Mineral_acid
chebi_ontology
inorganic acids
mineral acid
mineral acids
CHEBI:138103
inorganic acid
inorganic acids
ChEBI
mineral acid
ChEBI
mineral acids
ChEBI
Any member of a group of hydroxy steroids occuring in bile, where they are present as the sodium salts of their amides with glycine or taurine. In mammals bile acids almost invariably have 5beta-configuration, while in lower vertebrates, some bile acids, known as allo-bile acids, have 5alpha-configuration.
chebi_ontology
CHEBI:138366
bile acids
Any main group molecular entity that is gaseous at standard temperature and pressure (STP; 0degreeC and 100 kPa).
Wikipedia:https://en.wikipedia.org/wiki/Gas
chebi_ontology
gas molecular entities
gaseous molecular entities
gaseous molecular entity
CHEBI:138675
gas molecular entity
gas molecular entities
ChEBI
gaseous molecular entities
ChEBI
gaseous molecular entity
ChEBI
-1
CH2NO2
InChI=1S/CH3NO2/c2-1(3)4/h2H2,(H,3,4)/p-1
KXDHJXZQYSOELW-UHFFFAOYSA-M
60.03212
60.00910
NC([O-])=O
Beilstein:3903503
CAS:302-11-4
Gmelin:239604
carbamate
chebi_ontology
Carbamat
Karbamat
carbamate ion
carbamic acid, ion(1-)
CHEBI:13941
carbamate
Beilstein:3903503
Beilstein
CAS:302-11-4
ChemIDplus
Gmelin:239604
Gmelin
carbamate
IUPAC
carbamate
UniProt
Carbamat
ChEBI
Karbamat
ChEBI
carbamate ion
ChemIDplus
carbamic acid, ion(1-)
ChemIDplus
An antigenic epitope recognized by an anti-bilirubin monoclonal antibody designated 24G7. A substructure of bilirubin IXalpha, it is the region containing the oxo group at C-1, the methyl group at C-2, C-(4, 5, 6, 9), and N-21 and -22.
chebi_ontology
CHEBI:142163
24G7 epitope
electron donor
A molecular entity that can accept an electron, a pair of electrons, an atom or a group from another molecular entity.
CHEBI:13699
CHEBI:2377
KEGG:C00028
KEGG:C16722
Acceptor
chebi_ontology
A
Akzeptor
Hydrogen-acceptor
Oxidized donor
accepteur
CHEBI:15339
acceptor
Acceptor
KEGG_COMPOUND
A
KEGG_COMPOUND
Akzeptor
ChEBI
Hydrogen-acceptor
KEGG_COMPOUND
Oxidized donor
KEGG_COMPOUND
accepteur
ChEBI
Actylcholine is an ester of acetic acid and choline, which acts as a neurotransmitter.
CHEBI:12686
CHEBI:13715
CHEBI:22197
CHEBI:2416
CHEBI:40559
Beilstein:1764436
CAS:51-84-3
DrugBank:DB03128
Drug_Central:65
Gmelin:326108
KEGG:C01996
LINCS:LSM-5888
PDBeChem:ACH
PMID:14764638
PMID:15014918
PMID:15231705
PMID:15361288
PMID:18050502
PMID:18407448
PMID:19255787
PMID:20963497
PMID:21130809
PMID:21246223
PMID:21545631
PMID:21601579
Wikipedia:Acetylcholine
2-acetyloxy-N,N,N-trimethylethanaminium
ACETYLCHOLINE
Acetylcholine
acetylcholine
chebi_ontology
ACh
Azetylcholin
O-Acetylcholine
choline acetate
CHEBI:15355
acetylcholine
Beilstein:1764436
ChemIDplus
CAS:51-84-3
ChemIDplus
CAS:51-84-3
KEGG COMPOUND
Drug_Central:65
DrugCentral
Gmelin:326108
Gmelin
PMID:14764638
Europe PMC
PMID:15014918
Europe PMC
PMID:15231705
Europe PMC
PMID:15361288
Europe PMC
PMID:18050502
Europe PMC
PMID:18407448
Europe PMC
PMID:19255787
Europe PMC
PMID:20963497
Europe PMC
PMID:21130809
Europe PMC
PMID:21246223
Europe PMC
PMID:21545631
Europe PMC
PMID:21601579
Europe PMC
2-acetyloxy-N,N,N-trimethylethanaminium
IUPAC
ACETYLCHOLINE
PDBeChem
Acetylcholine
KEGG_COMPOUND
acetylcholine
UniProt
ACh
ChemIDplus
Azetylcholin
ChEBI
O-Acetylcholine
KEGG_COMPOUND
choline acetate
ChemIDplus
A simple monocarboxylic acid containing two carbons.
CHEBI:22169
CHEBI:2387
CHEBI:40486
CAS:64-19-7
Drug_Central:4211
Gmelin:1380
HMDB:HMDB0000042
KEGG:C00033
KEGG:D00010
KNApSAcK:C00001176
LIPID_MAPS_instance:LMFA01010002
MetaCyc:ACET
PDBeChem:ACT
PDBeChem:ACY
PMID:12005138
PMID:15107950
PMID:16630552
PMID:16774200
PMID:17190852
PMID:19416101
PMID:19469536
PMID:22153255
PMID:22173419
PPDB:1333
Reaxys:506007
Wikipedia:Acetic_acid
ACETIC ACID
Acetic acid
acetic acid
chebi_ontology
AcOH
CH3-COOH
CH3CO2H
E 260
E-260
E260
Essigsaeure
Ethanoic acid
Ethylic acid
HOAc
INS No. 260
MeCO2H
MeCOOH
Methanecarboxylic acid
acide acetique
ethoic acid
CHEBI:15366
acetic acid
CAS:64-19-7
ChemIDplus
CAS:64-19-7
KEGG COMPOUND
CAS:64-19-7
NIST Chemistry WebBook
Drug_Central:4211
DrugCentral
Gmelin:1380
Gmelin
LIPID_MAPS_instance:LMFA01010002
LIPID MAPS
PMID:12005138
Europe PMC
PMID:15107950
Europe PMC
PMID:16630552
Europe PMC
PMID:16774200
Europe PMC
PMID:17190852
Europe PMC
PMID:19416101
Europe PMC
PMID:19469536
Europe PMC
PMID:22153255
Europe PMC
PMID:22173419
Europe PMC
Reaxys:506007
Reaxys
ACETIC ACID
PDBeChem
Acetic acid
KEGG_COMPOUND
acetic acid
IUPAC
AcOH
ChEBI
CH3-COOH
IUPAC
CH3CO2H
ChEBI
E 260
ChEBI
E-260
ChEBI
E260
ChEBI
Essigsaeure
ChEBI
Ethanoic acid
KEGG_COMPOUND
Ethylic acid
ChemIDplus
HOAc
ChEBI
INS No. 260
ChEBI
MeCO2H
ChEBI
MeCOOH
ChEBI
Methanecarboxylic acid
ChemIDplus
acide acetique
ChemIDplus
ethoic acid
ChEBI
water
The general name for the hydrogen nucleus, to be used without regard to the hydrogen nuclear mass (either for hydrogen in its natural abundance or where it is not desired to distinguish between the isotopes).
+1
H
InChI=1S/p+1
GPRLSGONYQIRFK-UHFFFAOYSA-N
1.00794
1.008
[H+]
CHEBI:10744
CHEBI:13357
CHEBI:5584
KEGG:C00080
Hydron
hydrogen(1+)
hydron
chebi_ontology
H(+)
H+
CHEBI:15378
hydron
Hydron
KEGG_COMPOUND
hydrogen(1+)
IUPAC
hydron
IUPAC
H(+)
UniProt
H+
KEGG_COMPOUND
CHEBI:10745
CHEBI:13416
CHEBI:23833
CHEBI:25366
CHEBI:30491
CHEBI:44742
CHEBI:7860
CAS:7782-44-7
Gmelin:485
HMDB:HMDB0001377
KEGG:C00007
KEGG:D00003
MetaCyc:OXYGEN-MOLECULE
MolBase:750
PDBeChem:OXY
PMID:10906528
PMID:16977326
PMID:18210929
PMID:18638417
PMID:19840863
PMID:7710549
PMID:9463773
Wikipedia:Oxygen
dioxygen
chebi_ontology
Disauerstoff
E 948
E-948
E948
O2
OXYGEN MOLECULE
Oxygen
[OO]
dioxygene
molecular oxygen
CHEBI:15379
dioxygen
CAS:7782-44-7
ChemIDplus
CAS:7782-44-7
KEGG COMPOUND
CAS:7782-44-7
NIST Chemistry WebBook
Gmelin:485
Gmelin
PMID:10906528
Europe PMC
PMID:16977326
Europe PMC
PMID:18210929
Europe PMC
PMID:18638417
Europe PMC
PMID:19840863
Europe PMC
PMID:7710549
Europe PMC
PMID:9463773
Europe PMC
dioxygen
IUPAC
Disauerstoff
ChEBI
E 948
ChEBI
E-948
ChEBI
E948
ChEBI
O2
IUPAC
O2
KEGG_COMPOUND
O2
UniProt
OXYGEN MOLECULE
PDBeChem
Oxygen
KEGG_COMPOUND
[OO]
MolBase
dioxygene
ChEBI
molecular oxygen
ChEBI
A trace radioisotope of argon with atomic mass of 38.964313 and a half-life of 269 years.
0
[39Ar]
InChI=1S/Ar/i1-1
XKRFYHLGVUSROY-BJUDXGSMSA-N
38.964
38.96431
[Ar]
CAS:25729-41-3
PMID:16429279
PMID:17781454
PMID:17791262
PMID:28017500
PMID:28755564
PMID:30487580
chebi_ontology
(39)18Ar
(39)Ar
(39)Ar radioisotope
Ar-39
Ar-39 radioisotope
argon 39
argon, isotope of mass 39
argon-39
CHEBI:155827
argon-39 atom
CAS:25729-41-3
ChemIDplus
PMID:16429279
Europe PMC
PMID:17781454
Europe PMC
PMID:17791262
Europe PMC
PMID:28017500
Europe PMC
PMID:28755564
Europe PMC
PMID:30487580
Europe PMC
(39)18Ar
ChEBI
(39)Ar
ChemIDplus
(39)Ar radioisotope
ChEBI
Ar-39
ChEBI
Ar-39 radioisotope
ChEBI
argon 39
ChEBI
argon, isotope of mass 39
ChemIDplus
argon-39
ChEBI
Aldehydic parent sugars (polyhydroxy aldehydes H[CH(OH)]nC(=O)H, n >= 2) and their intramolecular hemiacetals.
CHEBI:13755
CHEBI:22305
CHEBI:2561
KEGG:C01370
Wikipedia:Aldose
Aldose
chebi_ontology
aldoses
an aldose
CHEBI:15693
aldose
Aldose
KEGG_COMPOUND
aldoses
ChEBI
an aldose
UniProt
A peptide containing ten or more amino acid residues.
C4H6N2O3R2(C2H2NOR)n
CHEBI:14860
CHEBI:8314
KEGG:C00403
Polypeptide
polypeptides
chebi_ontology
Polypeptid
polipeptido
CHEBI:15841
polypeptide
Polypeptide
KEGG_COMPOUND
polypeptides
IUPAC
Polypeptid
ChEBI
polipeptido
ChEBI
A nucleobase-containing molecular entity with a polymeric structure comprised of a linear sequence of 13 or more nucleotide residues.
CHEBI:13672
CHEBI:14859
CHEBI:8312
KEGG:C00419
Polynucleotide
chebi_ontology
polynucleotides
CHEBI:15986
polynucleotide
Polynucleotide
KEGG_COMPOUND
polynucleotides
ChEBI
An azane that consists of a single nitrogen atom covelently bonded to three hydrogen atoms.
0
H3N
InChI=1S/H3N/h1H3
QGZKDVFQNNGYKY-UHFFFAOYSA-N
17.03056
17.02655
[H]N([H])[H]
CHEBI:13405
CHEBI:13406
CHEBI:13407
CHEBI:13771
CHEBI:22533
CHEBI:44269
CHEBI:44284
CHEBI:44404
CHEBI:7434
Beilstein:3587154
CAS:7664-41-7
Drug_Central:4625
Gmelin:79
HMDB:HMDB0000051
KEGG:C00014
KEGG:D02916
KNApSAcK:C00007267
MetaCyc:AMMONIA
MolBase:930
PDBeChem:NH3
PMID:110589
PMID:11139349
PMID:11540049
PMID:11746427
PMID:11783653
PMID:13753780
PMID:14663195
PMID:15092448
PMID:15094021
PMID:15554424
PMID:15969015
PMID:16008360
PMID:16050680
PMID:16348008
PMID:16349403
PMID:16614889
PMID:16664306
PMID:16842901
PMID:17025297
PMID:17439666
PMID:17569513
PMID:17737668
PMID:18670398
PMID:22002069
PMID:22081570
PMID:22088435
PMID:22100291
PMID:22130175
PMID:22150211
PMID:22240068
PMID:22290316
PMID:22342082
PMID:22385337
PMID:22443779
PMID:22560242
Reaxys:3587154
Wikipedia:Ammonia
AMMONIA
Ammonia
ammonia
azane
chebi_ontology
Ammoniak
NH3
R-717
[NH3]
ammoniac
amoniaco
spirit of hartshorn
CHEBI:16134
ammonia
Beilstein:3587154
Beilstein
CAS:7664-41-7
ChemIDplus
CAS:7664-41-7
KEGG COMPOUND
CAS:7664-41-7
NIST Chemistry WebBook
Drug_Central:4625
DrugCentral
Gmelin:79
Gmelin
PMID:110589
Europe PMC
PMID:11139349
Europe PMC
PMID:11540049
Europe PMC
PMID:11746427
Europe PMC
PMID:11783653
Europe PMC
PMID:13753780
Europe PMC
PMID:14663195
Europe PMC
PMID:15092448
Europe PMC
PMID:15094021
Europe PMC
PMID:15554424
Europe PMC
PMID:15969015
Europe PMC
PMID:16008360
Europe PMC
PMID:16050680
Europe PMC
PMID:16348008
Europe PMC
PMID:16349403
Europe PMC
PMID:16614889
Europe PMC
PMID:16664306
Europe PMC
PMID:16842901
Europe PMC
PMID:17025297
Europe PMC
PMID:17439666
Europe PMC
PMID:17569513
Europe PMC
PMID:17737668
Europe PMC
PMID:18670398
Europe PMC
PMID:22002069
Europe PMC
PMID:22081570
Europe PMC
PMID:22088435
Europe PMC
PMID:22100291
Europe PMC
PMID:22130175
Europe PMC
PMID:22150211
Europe PMC
PMID:22240068
Europe PMC
PMID:22290316
Europe PMC
PMID:22342082
Europe PMC
PMID:22385337
Europe PMC
PMID:22443779
Europe PMC
PMID:22560242
Europe PMC
Reaxys:3587154
Reaxys
AMMONIA
PDBeChem
Ammonia
KEGG_COMPOUND
ammonia
IUPAC
azane
IUPAC
Ammoniak
ChemIDplus
NH3
IUPAC
NH3
KEGG_COMPOUND
NH3
UniProt
R-717
ChEBI
[NH3]
MolBase
ammoniac
ChEBI
amoniaco
ChEBI
spirit of hartshorn
ChemIDplus
A sulfur oxoanion obtained by deprotonation of both OH groups of sulfuric acid.
CHEBI:15135
CHEBI:45687
CHEBI:9335
CAS:14808-79-8
Gmelin:2120
HMDB:HMDB0001448
KEGG:C00059
KEGG:D05963
MetaCyc:SULFATE
PDBeChem:SO4
PMID:11200094
PMID:11452993
PMID:11581495
PMID:11798107
PMID:12166931
PMID:12668033
PMID:14597181
PMID:15093386
PMID:15984785
PMID:16186560
PMID:16345535
PMID:16347366
PMID:16348007
PMID:16483812
PMID:16534979
PMID:16656509
PMID:16742508
PMID:16742518
PMID:17120760
PMID:17420092
PMID:17439666
PMID:17709180
PMID:18398178
PMID:18815700
PMID:18846414
PMID:19047345
PMID:19244483
PMID:19544990
PMID:19628332
PMID:19812358
PMID:30398859
Reaxys:3648446
Wikipedia:Sulfate
Sulfate
sulfate
tetraoxidosulfate(2-)
tetraoxosulfate(2-)
tetraoxosulfate(VI)
chebi_ontology
SO4(2-)
SULFATE ION
Sulfate anion(2-)
Sulfate dianion
Sulfate(2-)
Sulfuric acid ion(2-)
[SO4](2-)
sulphate
sulphate ion
CHEBI:16189
sulfate
CAS:14808-79-8
ChemIDplus
CAS:14808-79-8
NIST Chemistry WebBook
Gmelin:2120
Gmelin
PMID:11200094
Europe PMC
PMID:11452993
Europe PMC
PMID:11581495
Europe PMC
PMID:11798107
Europe PMC
PMID:12166931
Europe PMC
PMID:12668033
Europe PMC
PMID:14597181
Europe PMC
PMID:15093386
Europe PMC
PMID:15984785
Europe PMC
PMID:16186560
Europe PMC
PMID:16345535
Europe PMC
PMID:16347366
Europe PMC
PMID:16348007
Europe PMC
PMID:16483812
Europe PMC
PMID:16534979
Europe PMC
PMID:16656509
Europe PMC
PMID:16742508
Europe PMC
PMID:16742518
Europe PMC
PMID:17120760
Europe PMC
PMID:17420092
Europe PMC
PMID:17439666
Europe PMC
PMID:17709180
Europe PMC
PMID:18398178
Europe PMC
PMID:18815700
Europe PMC
PMID:18846414
Europe PMC
PMID:19047345
Europe PMC
PMID:19244483
Europe PMC
PMID:19544990
Europe PMC
PMID:19628332
Europe PMC
PMID:19812358
Europe PMC
PMID:30398859
Europe PMC
Reaxys:3648446
Reaxys
Sulfate
KEGG_COMPOUND
sulfate
IUPAC
sulfate
UniProt
tetraoxidosulfate(2-)
IUPAC
tetraoxosulfate(2-)
IUPAC
tetraoxosulfate(VI)
IUPAC
SO4(2-)
IUPAC
SULFATE ION
PDBeChem
Sulfate anion(2-)
HMDB
Sulfate dianion
HMDB
Sulfate(2-)
HMDB
Sulfuric acid ion(2-)
HMDB
[SO4](2-)
IUPAC
sulphate
ChEBI
sulphate ion
ChEBI
A mucopolysaccharide composed of N-acetylglucosamine and glucuronic acid subunits. It is found in the connective tissues of vertebrates. A principal constituent of the extracellular matrix (ECM), it mediates the growth and metastasis of tumour cells.
CHEBI:14412
CHEBI:24622
CHEBI:24623
CHEBI:5772
Beilstein:8538277
CAS:9004-61-9
HMDB:HMDB0010366
KEGG:C00518
KEGG:D08043
KEGG:G10505
PMID:11122186
PMID:18056362
PMID:18290544
Reaxys:8187837
Wikipedia:Hyaluronan
Hyaluronic acid
chebi_ontology
Hyaluronsaeure
[beta-D-glucopyranuronosyl-(1->3)-2-(acetylamino)-2-deoxy-beta-D-glucopyranosyl-(1->4)]n
[beta-N-Acetyl-D-glucosaminyl(1,4)beta-D-glucuronosyl(1,3)]n
acide hyaluronique
acido hialuronico
hyaluronan
CHEBI:16336
hyaluronic acid
Beilstein:8538277
Beilstein
CAS:9004-61-9
ChemIDplus
CAS:9004-61-9
KEGG COMPOUND
PMID:11122186
Europe PMC
PMID:18056362
Europe PMC
PMID:18290544
Europe PMC
Reaxys:8187837
Reaxys
Hyaluronic acid
KEGG_COMPOUND
Hyaluronsaeure
ChEBI
[beta-D-glucopyranuronosyl-(1->3)-2-(acetylamino)-2-deoxy-beta-D-glucopyranosyl-(1->4)]n
ChEBI
[beta-N-Acetyl-D-glucosaminyl(1,4)beta-D-glucuronosyl(1,3)]n
KEGG_COMPOUND
acide hyaluronique
ChEBI
acido hialuronico
ChEBI
hyaluronan
ChEBI
carbon dioxide
A naturally occurring polypeptide synthesized at the ribosome.
CHEBI:8526
KEGG:C00017
chebi_ontology
Protein
a protein
polypeptide chain
protein polypeptide chains
CHEBI:16541
protein polypeptide chain
Protein
KEGG_COMPOUND
a protein
UniProt
polypeptide chain
ChEBI
protein polypeptide chains
ChEBI
Any member of the class of organooxygen compounds that is a polyhydroxy-aldehyde or -ketone or a lactol resulting from their intramolecular condensation (monosaccharides); substances derived from these by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom; and polymeric products arising by intermolecular acetal formation between two or more such molecules (disaccharides, polysaccharides and oligosaccharides). Carbohydrates contain only carbon, hydrogen and oxygen atoms; prior to any oxidation or reduction, most have the empirical formula Cm(H2O)n. Compounds obtained from carbohydrates by substitution, etc., are known as carbohydrate derivatives and may contain other elements. Cyclitols are generally not regarded as carbohydrates.
CHEBI:15131
CHEBI:23008
CHEBI:9318
Wikipedia:Carbohydrate
carbohydrate
carbohydrates
chebi_ontology
Kohlenhydrat
Kohlenhydrate
a carbohydrate
carbohidrato
carbohidratos
glucide
glucides
glucido
glucidos
hydrates de carbone
saccharide
saccharides
saccharidum
CHEBI:16646
carbohydrate
carbohydrate
IUPAC
carbohydrates
IUPAC
Kohlenhydrat
ChEBI
Kohlenhydrate
ChEBI
a carbohydrate
UniProt
carbohidrato
IUPAC
carbohidratos
IUPAC
glucide
ChEBI
glucides
ChEBI
glucido
ChEBI
glucidos
ChEBI
hydrates de carbone
ChEBI
saccharide
IUPAC
saccharides
IUPAC
saccharidum
ChEBI
Amide derived from two or more amino carboxylic acid molecules (the same or different) by formation of a covalent bond from the carbonyl carbon of one to the nitrogen atom of another with formal loss of water. The term is usually applied to structures formed from alpha-amino acids, but it includes those derived from any amino carboxylic acid. X = OH, OR, NH2, NHR, etc.
0
(C2H2NOR)nC2H3NOR
CHEBI:14753
CHEBI:25906
CHEBI:7990
KEGG:C00012
Peptide
peptides
chebi_ontology
Peptid
peptido
peptidos
CHEBI:16670
peptide
Peptide
KEGG_COMPOUND
peptides
IUPAC
Peptid
ChEBI
peptido
ChEBI
peptidos
ChEBI
chebi_ontology
noradrenaline
CHEBI:166902
noradrenaline(1+)
noradrenaline
UniProt
Any oligosaccharide, polysaccharide or their derivatives consisting of monosaccharides or monosaccharide derivatives linked by glycosidic bonds. See also http://www.ontobee.org/ontology/GNO?iri=http://purl.obolibrary.org/obo/GNO_00000001.
chebi_ontology
glycans
CHEBI:167559
glycan
glycans
ChEBI
An aminoalkylindole consisting of indole having a 2-aminoethyl group at the 3-position.
CHEBI:15274
CHEBI:27161
CHEBI:46157
CHEBI:9767
CAS:61-54-1
DrugBank:DB08653
Gmelin:603448
HMDB:HMDB0000303
KEGG:C00398
KNApSAcK:C00001434
MetaCyc:TRYPTAMINE
PDBeChem:TSS
PMID:16126914
PMID:22770225
PMID:24345948
PMID:24558969
Reaxys:125513
Wikipedia:Tryptamine
2-(1H-indol-3-yl)ethanamine
Tryptamine
chebi_ontology
1H-indole-3-ethanamine
2-(1H-INDOL-3-YL)ETHANAMINE
2-(3-indolyl)ethylamine
3-(2-Aminoethyl)indole
CHEBI:16765
tryptamine
CAS:61-54-1
ChemIDplus
CAS:61-54-1
KEGG COMPOUND
CAS:61-54-1
NIST Chemistry WebBook
Gmelin:603448
Gmelin
PMID:16126914
Europe PMC
PMID:22770225
Europe PMC
PMID:24345948
Europe PMC
PMID:24558969
Europe PMC
Reaxys:125513
Reaxys
2-(1H-indol-3-yl)ethanamine
IUPAC
Tryptamine
KEGG_COMPOUND
1H-indole-3-ethanamine
NIST_Chemistry_WebBook
2-(1H-INDOL-3-YL)ETHANAMINE
PDBeChem
2-(3-indolyl)ethylamine
ChemIDplus
3-(2-Aminoethyl)indole
KEGG_COMPOUND
A member of the class of biladienes that is a linear tetrapyrrole with the dipyrrole units being of both exovinyl and endovinyl type. A product of heme degradation, it is produced in the reticuloendothelial system by the reduction of biliverdin and transported to the liver as a complex with serum albumin.
CHEBI:13898
CHEBI:22870
CHEBI:3099
CAS:635-65-4
Gmelin:411033
HMDB:HMDB0000054
KEGG:C00486
KNApSAcK:C00029828
MetaCyc:BILIRUBIN
PDBeChem:BLR
PMID:12799017
PMID:18442622
PMID:23763371
PMID:23768684
PMID:30224965
PMID:8605219
PMID:9587403
Reaxys:74376
Wikipedia:Bilirubin
3,18-diethenyl-2,7,13,17-tetramethyl-1,19-dioxo-1,10,19,22,23,24-hexahydro-21H-biline-8,12-dipropanoic acid
bilirubin
chebi_ontology
1,10,19,22,23,24-hexahydro-2,7,13,17-tetramethyl-1,19-dioxo-3,18-divinylbiline-8,12-dipropionic acid
2,17-diethenyl-1,10,19,22,23,24-hexahydro-3,7,13,18-tetramethyl-1,19-dioxo-21H-biline-8,12-dipropanoic acid
2,7,13,17-tetramethyl-1,19-dioxo-3,18-divinyl-1,10,19,22,23,24-hexahydro-21H-biline-8,12-dipropanoic acid
8,12-bis(2-carboxyethyl)-2,7,13,17-tetramethyl-3,18-divinylbiladiene-ac-1,19(21H,24H)-dione
Bilirubin
bilirubin(Z,Z)
bilirubin-IXalpha
CHEBI:16990
bilirubin IXalpha
CAS:635-65-4
ChemIDplus
CAS:635-65-4
KEGG COMPOUND
Gmelin:411033
Gmelin
PMID:12799017
Europe PMC
PMID:18442622
Europe PMC
PMID:23763371
Europe PMC
PMID:23768684
Europe PMC
PMID:30224965
Europe PMC
PMID:8605219
Europe PMC
PMID:9587403
Europe PMC
Reaxys:74376
Reaxys
3,18-diethenyl-2,7,13,17-tetramethyl-1,19-dioxo-1,10,19,22,23,24-hexahydro-21H-biline-8,12-dipropanoic acid
IUPAC
bilirubin
IUPAC
1,10,19,22,23,24-hexahydro-2,7,13,17-tetramethyl-1,19-dioxo-3,18-divinylbiline-8,12-dipropionic acid
ChemIDplus
2,17-diethenyl-1,10,19,22,23,24-hexahydro-3,7,13,18-tetramethyl-1,19-dioxo-21H-biline-8,12-dipropanoic acid
ChemIDplus
2,7,13,17-tetramethyl-1,19-dioxo-3,18-divinyl-1,10,19,22,23,24-hexahydro-21H-biline-8,12-dipropanoic acid
IUPAC
8,12-bis(2-carboxyethyl)-2,7,13,17-tetramethyl-3,18-divinylbiladiene-ac-1,19(21H,24H)-dione
JCBN
Bilirubin
KEGG_COMPOUND
bilirubin(Z,Z)
ChEBI
bilirubin-IXalpha
ChEBI
A compound in which a carbonyl group is bonded to two carbon atoms: R2C=O (neither R may be H).
CHEBI:13427
CHEBI:13646
CHEBI:24974
CHEBI:6127
CHEBI:8742
KEGG:C01450
Wikipedia:Ketone
Ketone
ketones
chebi_ontology
Keton
R-CO-R'
a ketone
cetone
ketones
CHEBI:17087
ketone
Ketone
KEGG_COMPOUND
ketones
IUPAC
Keton
ChEBI
R-CO-R'
KEGG_COMPOUND
a ketone
UniProt
cetone
ChEBI
ketones
ChEBI
A compound in which a carbohydrate component is covalently bound to a protein component.
CHEBI:14349
CHEBI:5481
CHEBI:5493
KEGG:C00326
Glycoprotein
glycoproteins
chebi_ontology
Glykoprotein
Glykoproteine
a glycoprotein
glicoproteina
glicoproteinas
glycoproteine
glycoproteines
CHEBI:17089
glycoprotein
Glycoprotein
KEGG_COMPOUND
glycoproteins
IUPAC
Glykoprotein
ChEBI
Glykoproteine
ChEBI
a glycoprotein
UniProt
glicoproteina
ChEBI
glicoproteinas
ChEBI
glycoproteine
ChEBI
glycoproteines
ChEBI
An aldohexose used as a source of energy and metabolic intermediate.
CHEBI:14313
CHEBI:24277
CHEBI:33929
CHEBI:5418
CAS:50-99-7
KEGG:C00293
Wikipedia:Glucose
Glucose
gluco-hexose
glucose
chebi_ontology
DL-glucose
Glc
Glukose
CHEBI:17234
glucose
CAS:50-99-7
KEGG COMPOUND
Glucose
KEGG_COMPOUND
gluco-hexose
IUPAC
glucose
IUPAC
DL-glucose
ChEBI
Glc
JCBN
Glukose
ChEBI
The carbon oxoanion resulting from the removal of a proton from carbonic acid.
CHEBI:13363
CHEBI:22863
CHEBI:40961
CHEBI:5589
Beilstein:3903504
CAS:71-52-3
Gmelin:49249
HMDB:HMDB0000595
KEGG:C00288
MetaCyc:HCO3
PDBeChem:BCT
PMID:17215880
PMID:17505962
PMID:18439416
PMID:28732801
PMID:29150416
PMID:29460248
PMID:29466234
PMID:4208463
Wikipedia:Bicarbonate
Hydrogencarbonate
hydrogen(trioxidocarbonate)(1-)
hydrogencarbonate
hydrogencarbonate(1-)
hydrogentrioxocarbonate(1-)
hydrogentrioxocarbonate(IV)
hydroxidodioxidocarbonate(1-)
chebi_ontology
Acid carbonate
BICARBONATE ION
Bicarbonate
HCO3(-)
HCO3-
[CO2(OH)](-)
hydrogen carbonate
CHEBI:17544
hydrogencarbonate
Beilstein:3903504
Beilstein
CAS:71-52-3
ChemIDplus
Gmelin:49249
Gmelin
PMID:17215880
Europe PMC
PMID:17505962
Europe PMC
PMID:18439416
Europe PMC
PMID:28732801
Europe PMC
PMID:29150416
Europe PMC
PMID:29460248
Europe PMC
PMID:29466234
Europe PMC
PMID:4208463
Europe PMC
Hydrogencarbonate
KEGG_COMPOUND
hydrogen(trioxidocarbonate)(1-)
IUPAC
hydrogencarbonate
IUPAC
hydrogencarbonate
UniProt
hydrogencarbonate(1-)
IUPAC
hydrogentrioxocarbonate(1-)
IUPAC
hydrogentrioxocarbonate(IV)
IUPAC
hydroxidodioxidocarbonate(1-)
IUPAC
Acid carbonate
KEGG_COMPOUND
BICARBONATE ION
PDBeChem
Bicarbonate
KEGG_COMPOUND
HCO3(-)
IUPAC
HCO3-
KEGG_COMPOUND
[CO2(OH)](-)
IUPAC
hydrogen carbonate
PDBeChem
Any D-aldose having a chain of six carbon atoms in the molecule.
CHEBI:12990
CHEBI:21038
chebi_ontology
D-aldohexoses
CHEBI:17608
D-aldohexose
D-aldohexoses
ChEBI
A glucose with D-configuration.
CHEBI:12965
CHEBI:20999
CAS:50-99-7
D-gluco-hexose
D-glucose
chebi_ontology
D(+)-glucose
D-(+)-glucose
Traubenzucker
dextrose
grape sugar
CHEBI:17634
D-glucose
CAS:50-99-7
ChemIDplus
CAS:50-99-7
NIST Chemistry WebBook
D-gluco-hexose
IUPAC
D-glucose
IUPAC
D(+)-glucose
ChemIDplus
D-(+)-glucose
NIST_Chemistry_WebBook
Traubenzucker
ChemIDplus
dextrose
NIST_Chemistry_WebBook
grape sugar
ChemIDplus
A minor stable isotope of calcium with relative atomic mass 42.95877 and 0.135 atom percent natural abundance.
0
[43Ca]
InChI=1S/Ca/i1+3
OYPRJOBELJOOCE-AKLPVKDBSA-N
42.959
42.95877
[43Ca]
CAS:14333-06-3
PMID:11859764
PMID:19117733
PMID:20463996
PMID:20574585
PMID:23163540
PMID:23398971
PMID:24874995
PMID:25306191
PMID:29770988
PMID:6548252
((43)Ca)calcium
chebi_ontology
(43)20Ca
(43)Ca
(43)calcium
Ca-43
calcium, isotope of mass 43
calcium-43
calcium-43 isotope
CHEBI:176566
calcium-43 atom
CAS:14333-06-3
ChemIDplus
PMID:11859764
Europe PMC
PMID:19117733
Europe PMC
PMID:20463996
Europe PMC
PMID:20574585
Europe PMC
PMID:23163540
Europe PMC
PMID:23398971
Europe PMC
PMID:24874995
Europe PMC
PMID:25306191
Europe PMC
PMID:29770988
Europe PMC
PMID:6548252
Europe PMC
((43)Ca)calcium
IUPAC
(43)20Ca
ChEBI
(43)Ca
ChemIDplus
(43)calcium
ChEBI
Ca-43
ChEBI
calcium, isotope of mass 43
ChemIDplus
calcium-43
ChemIDplus
calcium-43 isotope
ChEBI
A stable isotope of molybdenum with relative atomic mass 97.90541, 24.29 atom percent natural abundance and nuclear spin 0.
0
[98Mo]
InChI=1S/Mo/i1+2
ZOKXTWBITQBERF-NJFSPNSNSA-N
97.905
97.90541
[98Mo]
CAS:14392-20-2
PMID:19720541
PMID:22796396
PMID:22970917
PMID:24593536
PMID:25087173
PMID:25168118
PMID:25880611
PMID:26397967
PMID:26808401
((98)Mo)molybdenum
chebi_ontology
(98)42Mo
(98)Mo
Mo-98
molybdenum, isotope of mass 98
molybdenum-98
CHEBI:176570
molybdenum-98 atom
CAS:14392-20-2
ChemIDplus
PMID:19720541
Europe PMC
PMID:22796396
Europe PMC
PMID:22970917
Europe PMC
PMID:24593536
Europe PMC
PMID:25087173
SUBMITTER
PMID:25168118
Europe PMC
PMID:25880611
Europe PMC
PMID:26397967
Europe PMC
PMID:26808401
Europe PMC
((98)Mo)molybdenum
IUPAC
(98)42Mo
ChEBI
(98)Mo
ChemIDplus
Mo-98
ChEBI
molybdenum, isotope of mass 98
ChemIDplus
molybdenum-98
ChemIDplus
A major stable isotope of strontium with relative atomic mass 87.90561 and 82.58 atom percent natural abundance.
0
[88Sr]
InChI=1S/Sr/i1+0
CIOAGBVUUVVLOB-IGMARMGPSA-N
87.906
87.90561
[88Sr]
CAS:14119-10-9
PMID:11893161
PMID:27829691
PMID:32350478
PMID:33328666
PMID:33834832
PMID:6337617
((88)Sr)strontium
chebi_ontology
(88)38Sr
(88)Sr
(88)strontium
Sr-88
strontium, isotope of mass 88
strontium-88
strontium-88 isotope
CHEBI:176571
strontium-88 atom
CAS:14119-10-9
ChemIDplus
PMID:11893161
Europe PMC
PMID:27829691
Europe PMC
PMID:32350478
Europe PMC
PMID:33328666
Europe PMC
PMID:33834832
Europe PMC
PMID:6337617
SUBMITTER
((88)Sr)strontium
IUPAC
(88)38Sr
ChEBI
(88)Sr
ChemIDplus
(88)strontium
ChEBI
Sr-88
ChEBI
strontium, isotope of mass 88
ChemIDplus
strontium-88
ChemIDplus
strontium-88 isotope
ChEBI
A stable isotope of rubidium with relative atomic mass 84.91179, 72.17 atom percent natural abundance and nuclear spin 5/2.
0
[85Rb]
InChI=1S/Rb/i1+0
IGLNJRXAVVLDKE-IGMARMGPSA-N
84.912
84.91179
[85Rb]
CAS:13982-12-2
PMID:18026483
PMID:18033464
PMID:18291893
PMID:18382518
PMID:19855587
PMID:25087142
PMID:32909800
PMID:33709729
PMID:34170158
((85)Rb)rubidium
chebi_ontology
(85)37Rb
(85)Rb
Rb-85
rubidium, isotope of mass 85
rubidium-85
CHEBI:176572
rubidium-85 atom
CAS:13982-12-2
ChemIDplus
PMID:18026483
Europe PMC
PMID:18033464
Europe PMC
PMID:18291893
Europe PMC
PMID:18382518
Europe PMC
PMID:19855587
Europe PMC
PMID:25087142
SUBMITTER
PMID:32909800
Europe PMC
PMID:33709729
Europe PMC
PMID:34170158
Europe PMC
((85)Rb)rubidium
IUPAC
(85)37Rb
ChEBI
(85)Rb
ChemIDplus
Rb-85
ChEBI
rubidium, isotope of mass 85
ChemIDplus
rubidium-85
ChemIDplus
A stable isotope of selenium with relative atomic mass 81.91670, 8.82 atom percent natural abundance and nuclear spin 0.
0
[82Se]
InChI=1S/Se/i1+3
BUGBHKTXTAQXES-AKLPVKDBSA-N
81.917
81.91670
[82Se]
CAS:14687-58-2
Chemspider:4892236
PMID:16028633
PMID:18781022
PMID:21139275
PMID:22258472
PMID:23575454
PMID:29932707
PMID:30881205
PMID:31386478
PMID:31951429
PMID:33576665
PMID:6337549
((82)Se)selenium
chebi_ontology
(82)34Se
(82)Se
Se-82
selenium, isotope of mass 82
selenium-82
CHEBI:176573
selenium-82 atom
CAS:14687-58-2
ChemIDplus
PMID:16028633
Europe PMC
PMID:18781022
Europe PMC
PMID:21139275
Europe PMC
PMID:22258472
Europe PMC
PMID:23575454
Europe PMC
PMID:29932707
Europe PMC
PMID:30881205
Europe PMC
PMID:31386478
Europe PMC
PMID:31951429
Europe PMC
PMID:33576665
Europe PMC
PMID:6337549
SUBMITTER
((82)Se)selenium
IUPAC
(82)34Se
ChEBI
(82)Se
ChemIDplus
Se-82
ChEBI
selenium, isotope of mass 82
ChemIDplus
selenium-82
ChemIDplus
A stable isotope of zinc with relative atomic mass 65.92603, 27.7 atom percent natural abundance and nuclear spin 0.
0
[66Zn]
InChI=1S/Zn/i1+1
HCHKCACWOHOZIP-OUBTZVSYSA-N
65.926
65.92603
[66Zn]
CAS:14378-33-7
PMID:12447866
PMID:19836537
PMID:20155761
PMID:21047059
PMID:24196216
PMID:26065372
PMID:26808401
PMID:27189145
PMID:27306032
((66)Zn)zinc
chebi_ontology
(66)30Zn
(66)Zn
Zn-66
zinc, isotope of mass 66
zinc-66
CHEBI:176574
zinc-66 atom
CAS:14378-33-7
ChemIDplus
PMID:12447866
SUBMITTER
PMID:19836537
Europe PMC
PMID:20155761
Europe PMC
PMID:21047059
Europe PMC
PMID:24196216
Europe PMC
PMID:26065372
Europe PMC
PMID:26808401
Europe PMC
PMID:27189145
Europe PMC
PMID:27306032
Europe PMC
((66)Zn)zinc
IUPAC
(66)30Zn
ChEBI
(66)Zn
ChemIDplus
Zn-66
ChemIDplus
zinc, isotope of mass 66
ChemIDplus
zinc-66
ChemIDplus
A stable isotope of nickel with relative atomic mass 59.93079, 26.223 atom percent natural abundance and nuclear spin 0.
0
[60Ni]
InChI=1S/Ni/i1+1
PXHVJJICTQNCMI-OUBTZVSYSA-N
59.931
59.93079
[60Ni]
CAS:13981-80-1
PMID:15308160
PMID:22583786
PMID:23149182
PMID:25126912
PMID:25700212
PMID:26709546
PMID:29376683
((60)Ni)nickel
chebi_ontology
(60)Ni
Ni-60
nickel, isotope of mass 60
nickel-60
CHEBI:176575
nickel-60 atom
CAS:13981-80-1
ChemIDplus
PMID:15308160
Europe PMC
PMID:22583786
Europe PMC
PMID:23149182
Europe PMC
PMID:25126912
Europe PMC
PMID:25700212
Europe PMC
PMID:26709546
Europe PMC
PMID:29376683
Europe PMC
((60)Ni)nickel
IUPAC
(60)Ni
ChEBI
Ni-60
ChEBI
nickel, isotope of mass 60
ChemIDplus
nickel-60
ChemIDplus
A stable isotope of cobalt with relative atomic mass 58.93319, 100 atom percent natural abundance and nuclear spin 7/2.
0
[59Co]
InChI=1S/Co/i1+0
GUTLYIVDDKVIGB-IGMARMGPSA-N
58.933
58.93319
[59Co]
PMID:10617436
PMID:10940985
PMID:11421673
PMID:11528329
PMID:12943912
PMID:19150229
PMID:19421527
PMID:25069794
PMID:25169133
PMID:26066447
PMID:26641288
PMID:27355901
PMID:30137661
PMID:31367328
PMID:32478347
((59)Co)cobalt
chebi_ontology
(59)27Co
(59)Co
Co-59
cobalt, isotope of mass 59
cobalt-(59)Co
cobalt-59
CHEBI:176578
cobalt-59 atom
PMID:10617436
Europe PMC
PMID:10940985
Europe PMC
PMID:11421673
Europe PMC
PMID:11528329
SUBMITTER
PMID:12943912
Europe PMC
PMID:19150229
Europe PMC
PMID:19421527
Europe PMC
PMID:25069794
Europe PMC
PMID:25169133
Europe PMC
PMID:26066447
Europe PMC
PMID:26641288
Europe PMC
PMID:27355901
Europe PMC
PMID:30137661
Europe PMC
PMID:31367328
Europe PMC
PMID:32478347
Europe PMC
((59)Co)cobalt
IUPAC
(59)27Co
ChEBI
(59)Co
ChEBI
Co-59
ChEBI
cobalt, isotope of mass 59
ChEBI
cobalt-(59)Co
ChEBI
cobalt-59
ChEBI
A stable isotope of manganese with relative atomic mass 54.93804, 100 atom percent natural abundance and nuclear spin 5/2.
0
[55Mn]
InChI=1S/Mn/i1+0
PWHULOQIROXLJO-IGMARMGPSA-N
54.938
54.93804
[55Mn]
PMID:20645339
PMID:21058720
PMID:21341708
PMID:24993844
PMID:25179135
PMID:25891681
((55)Mn)manganese
chebi_ontology
(55)25Mn
(55)Mn
Mn-55
manganese, isotope of mass 55
manganese-55
CHEBI:176583
manganese-55 atom
PMID:20645339
Europe PMC
PMID:21058720
Europe PMC
PMID:21341708
Europe PMC
PMID:24993844
Europe PMC
PMID:25179135
Europe PMC
PMID:25891681
Europe PMC
((55)Mn)manganese
IUPAC
(55)25Mn
ChEBI
(55)Mn
ChEBI
Mn-55
ChEBI
manganese, isotope of mass 55
ChEBI
manganese-55
ChEBI
A stable isotope of arsenic with relative atomic mass 74.921596, 100 atom percent natural abundance and nuclear spin 3/2.
0
[75As]
InChI=1S/As/i1+0
RQNWIZPPADIBDY-IGMARMGPSA-N
74.922
74.92159
[75As]
((75)As)arsenic
chebi_ontology
(75)33As
(75)As
As-75
arsenic, isotope of mass 75
arsenic-75
CHEBI:176584
arsenic-75 atom
(75)As
ChEBI
As-75
ChEBI
arsenic, isotope of mass 75
ChEBI
arsenic-75
ChEBI
((75)As)arsenic
IUPAC
(75)33As
ChEBI
A molecular entity that can transfer ("donate") an electron, a pair of electrons, an atom or a group to another molecular entity.
CHEBI:14202
CHEBI:4697
KEGG:C01351
Donor
chebi_ontology
Donator
donneur
CHEBI:17891
donor
Donor
KEGG_COMPOUND
Donator
ChEBI
donneur
ChEBI
dinitrogen
'Lipids' is a loosely defined term for substances of biological origin that are soluble in nonpolar solvents. They consist of saponifiable lipids, such as glycerides (fats and oils) and phospholipids, as well as nonsaponifiable lipids, principally steroids.
CHEBI:14517
CHEBI:25054
CHEBI:6486
KEGG:C01356
Lipid
lipids
chebi_ontology
CHEBI:18059
lipid
Lipid
KEGG_COMPOUND
lipids
IUPAC
Any polysaccharide containing a substantial proportion of aminomonosaccharide residues.
CHEBI:14361
CHEBI:24398
CHEBI:5495
KEGG:C02545
Wikipedia:Glycosaminoglycan
Glycosaminoglycan
glycosaminoglycan
chebi_ontology
Glykosaminoglykan
glicosaminoglicano
glycosaminoglycane
glycosaminoglycans
CHEBI:18085
glycosaminoglycan
Glycosaminoglycan
KEGG_COMPOUND
glycosaminoglycan
IUPAC
Glykosaminoglykan
ChEBI
glicosaminoglicano
IUPAC
glycosaminoglycane
IUPAC
glycosaminoglycans
ChEBI
Any six-carbon monosaccharide which in its linear form contains either an aldehyde group at position 1 (aldohexose) or a ketone group at position 2 (ketohexose).
CHEBI:14399
CHEBI:24590
CHEBI:5709
GlyGen:G70994MS
GlyTouCan:G70994MS
KEGG:C00738
Hexose
chebi_ontology
WURCS=2.0/1,1,0/[axxxxh-1x_1-5_2*NCC/3=O]/1/
hexoses
CHEBI:18133
hexose
Hexose
KEGG_COMPOUND
WURCS=2.0/1,1,0/[axxxxh-1x_1-5_2*NCC/3=O]/1/
GlyTouCan
hexoses
ChEBI
A biomacromolecule consisting of large numbers of monosaccharide residues linked glycosidically. This term is commonly used only for those containing more than ten monosaccharide residues.
CHEBI:14864
CHEBI:26205
CHEBI:8322
KEGG:C00420
Polysaccharide
polysaccharides
chebi_ontology
Glycan
Glycane
Glykan
Glykane
glycans
polisacarido
polisacaridos
CHEBI:18154
polysaccharide
Polysaccharide
KEGG_COMPOUND
polysaccharides
IUPAC
Glycan
KEGG_COMPOUND
Glycane
ChEBI
Glykan
ChEBI
Glykane
ChEBI
glycans
IUPAC
polisacarido
ChEBI
polisacaridos
IUPAC
An iron group element atom that has atomic number 26.
0
Fe
InChI=1S/Fe
XEEYBQQBJWHFJM-UHFFFAOYSA-N
55.84500
55.93494
[Fe]
CHEBI:13322
CHEBI:24872
CHEBI:5974
CAS:7439-89-6
DrugBank:DB01592
HMDB:HMDB0015531
KEGG:C00023
Reaxys:4122945
WebElements:Fe
iron
chebi_ontology
26Fe
Eisen
Fe
Iron
fer
ferrum
hierro
iron
CHEBI:18248
iron atom
CAS:7439-89-6
ChemIDplus
CAS:7439-89-6
KEGG COMPOUND
CAS:7439-89-6
NIST Chemistry WebBook
Reaxys:4122945
Reaxys
iron
IUPAC
26Fe
IUPAC
Eisen
ChEBI
Fe
IUPAC
Fe
UniProt
Iron
KEGG_COMPOUND
fer
ChEBI
ferrum
IUPAC
hierro
ChEBI
iron
ChEBI
That part of DNA or RNA that may be involved in pairing.
CHEBI:13873
CHEBI:25598
CHEBI:2995
KEGG:C00701
Wikipedia:Nucleobase
chebi_ontology
Base
nucleobases
CHEBI:18282
nucleobase
Base
KEGG_COMPOUND
nucleobases
ChEBI
0
Mn
InChI=1S/Mn
PWHULOQIROXLJO-UHFFFAOYSA-N
54.93805
54.93804
[Mn]
CHEBI:13382
CHEBI:25153
CHEBI:6681
CAS:7439-96-5
KEGG:C00034
WebElements:Mn
manganese
chebi_ontology
25Mn
Mangan
Manganese
Mn
manganese
manganeso
manganum
CHEBI:18291
manganese atom
CAS:7439-96-5
ChemIDplus
CAS:7439-96-5
KEGG COMPOUND
manganese
IUPAC
25Mn
IUPAC
Mangan
NIST_Chemistry_WebBook
Manganese
KEGG_COMPOUND
Mn
IUPAC
Mn
UniProt
manganese
ChEBI
manganeso
ChEBI
manganum
ChEBI
The R-enantiomer of noradrenaline.
CHEBI:1
CHEBI:14668
CHEBI:25592
CHEBI:258884
CHEBI:43725
Beilstein:4231961
CAS:51-41-2
DrugBank:DB00368
Drug_Central:1960
HMDB:HMDB0000216
KEGG:C00547
KEGG:D00076
KNApSAcK:C00001424
PDBeChem:LNR
Reaxys:2804840
Wikipedia:Norepinephrine
4-[(1R)-2-amino-1-hydroxyethyl]benzene-1,2-diol
chebi_ontology
(-)-arterenol
(-)-noradrenaline
(-)-norepinephrine
(R)-(-)-norepinephrine
(R)-4-(2-amino-1-hydroxyethyl)-1,2-benzenediol
(R)-norepinephrine
4-[(1R)-2-Amino-1-hydroxyethyl]-1,2-benzenediol
Arterenol
L-NOREPINEPHRINE
L-Noradrenaline
Noradrenaline
Norepinephrine
norepinefrina
norepinephrine
norepinephrinum
CHEBI:18357
(R)-noradrenaline
Beilstein:4231961
ChemIDplus
CAS:51-41-2
ChemIDplus
CAS:51-41-2
KEGG COMPOUND
Drug_Central:1960
DrugCentral
Reaxys:2804840
Reaxys
4-[(1R)-2-amino-1-hydroxyethyl]benzene-1,2-diol
IUPAC
(-)-arterenol
ChemIDplus
(-)-noradrenaline
IUPHAR
(-)-norepinephrine
ChemIDplus
(R)-(-)-norepinephrine
ChemIDplus
(R)-4-(2-amino-1-hydroxyethyl)-1,2-benzenediol
ChemIDplus
(R)-norepinephrine
ChemIDplus
4-[(1R)-2-Amino-1-hydroxyethyl]-1,2-benzenediol
KEGG_COMPOUND
Arterenol
KEGG_COMPOUND
L-NOREPINEPHRINE
PDBeChem
L-Noradrenaline
KEGG_COMPOUND
Noradrenaline
KEGG_COMPOUND
Norepinephrine
KEGG_COMPOUND
norepinefrina
ChEBI
norepinephrine
ChemIDplus
norepinephrine
WHO_MedNet
norepinephrinum
ChEBI
A carbon group element atom with a symbol Fl and atomic number 114.
0
Fl
InChI=1S/Fl
WIHJCBVMYKIGOT-UHFFFAOYSA-N
289.000
289.00000
[Fl]
PMID:16833611
PMID:17919027
PMID:19905506
PMID:20379506
PMID:20867370
PMID:23787759
PMID:24456007
PMID:29711350
PMID:36092655
Wikipedia:Flerovium
chebi_ontology
114Fl
114Uuq
E114
Fl
Uuq
eka-lead
element 114
ununquadium
CHEBI:194531
flerovium atom
PMID:16833611
Europe PMC
PMID:17919027
Europe PMC
PMID:19905506
Europe PMC
PMID:20379506
Europe PMC
PMID:20867370
Europe PMC
PMID:23787759
Europe PMC
PMID:24456007
Europe PMC
PMID:29711350
Europe PMC
PMID:36092655
Europe PMC
114Fl
ChEBI
114Uuq
ChEBI
E114
ChEBI
Fl
ChEBI
Uuq
ChEBI
eka-lead
ChEBI
element 114
ChEBI
ununquadium
ChEBI
A boron group element atom with a symbol Nh and atomic number 113.
0
Nh
InChI=1S/Nh
KUGNSLWRKGRKGS-UHFFFAOYSA-N
286.000
286.00000
[Nh]
PMID:19049424
PMID:34142795
PMID:34917588
PMID:36149319
PMID:9913354
Wikipedia:Nihonium
chebi_ontology
113Nh
E113
Nh
Uut
eka-thallium
element 113
ununtrium
CHEBI:194533
nihonium atom
PMID:19049424
Europe PMC
PMID:34142795
Europe PMC
PMID:34917588
Europe PMC
PMID:36149319
Europe PMC
PMID:9913354
Europe PMC
113Nh
ChEBI
E113
ChEBI
Nh
ChEBI
Uut
ChEBI
eka-thallium
ChEBI
element 113
ChEBI
ununtrium
ChEBI
A pnictogen atom with a symbol Mc and atomic number 115.
0
Mc
InChI=1S/Mc
QDXZEHQJHSHEQF-UHFFFAOYSA-N
289.000
289.00000
[Mc]
PMID:24074079
PMID:34142795
Wikipedia:Moscovium
chebi_ontology
115Mc
E115
Mc
Uup
eka-bismuth
element 115
ununpentium
CHEBI:194535
moscovium atom
PMID:24074079
Europe PMC
PMID:34142795
Europe PMC
115Mc
ChEBI
E115
ChEBI
Mc
ChEBI
Uup
ChEBI
eka-bismuth
ChEBI
element 115
ChEBI
ununpentium
ChEBI
A chalcogen atom with a symbol Lv and atomic number 116.
0
Lv
InChI=1S/Lv
ONFASNXETZOODS-UHFFFAOYSA-N
293.000
293.00000
[Lv]
PMID:17381195
PMID:27554416
Wikipedia:Livermorium
chebi_ontology
116Lv
E116
Lv
Uuh
eka-polonium
element 116
ununhexium
CHEBI:194537
livermorium atom
PMID:17381195
Europe PMC
PMID:27554416
Europe PMC
116Lv
ChEBI
E116
ChEBI
Lv
ChEBI
Uuh
ChEBI
eka-polonium
ChEBI
element 116
ChEBI
ununhexium
ChEBI
A halogen atom with a symbol Ts and atomic number 117.
0
Ts
InChI=1S/Ts
INMSAURDCVBGHH-UHFFFAOYSA-N
293.000
293.00000
[Ts]
PMID:16483205
PMID:19367904
PMID:20395479
PMID:23090670
Wikipedia:Tennessine
chebi_ontology
117Ts
E117
Ts
Uus
eka-astatine
element 117
ununseptium
CHEBI:194539
tennessine atom
PMID:16483205
Europe PMC
PMID:19367904
Europe PMC
PMID:20395479
Europe PMC
PMID:23090670
Europe PMC
117Ts
ChEBI
E117
ChEBI
Ts
ChEBI
Uus
ChEBI
eka-astatine
ChEBI
element 117
ChEBI
ununseptium
ChEBI
A p-block element atom with a symbol Og and atomic number 118.
0
InChI=1S/Og
GOANEQIZDYDFCO-UHFFFAOYSA-N
294.000
294.00000
[Og]
PMID:10062781
PMID:11486061
PMID:19045133
PMID:23913741
PMID:36859080
Wikipedia:Oganesson
chebi_ontology
118Og
E118
Og
Uuo
eka-emanation
eka-radon
element 118
ununoctium
CHEBI:194541
oganesson atom
PMID:10062781
Europe PMC
PMID:11486061
Europe PMC
PMID:19045133
Europe PMC
PMID:23913741
Europe PMC
PMID:36859080
Europe PMC
118Og
ChEBI
E118
ChEBI
Og
ChEBI
Uuo
ChEBI
eka-emanation
ChEBI
eka-radon
ChEBI
element 118
ChEBI
ununoctium
ChEBI
Beilstein:2048472
5beta-cholane
chebi_ontology
CHEBI:20664
5beta-cholane
Beilstein:2048472
Beilstein
5beta-cholane
IUPAC
An organic group formed by removing one or more hydroxy groups from an oxoacid that has the general structure RkE(=O)l(OH)m (l =/= 0). Although the term is almost always applied to organic compounds, with carboxylic acid as the oxoacid, acyl groups can in principle be derived from other types of acids such as sulfonic acids or phosphonic acids.
acyl group
alkanoyl
chebi_ontology
acyl groups
alkanoyl group
groupe acyle
CHEBI:22221
acyl group
acyl group
IUPAC
alkanoyl
IUPAC
acyl groups
ChEBI
alkanoyl group
ChEBI
groupe acyle
IUPAC
alkaline earth metals
chebi_ontology
Erdalkalimetall
Erdalkalimetalle
alkaline earth metal
alkaline-earth metal
alkaline-earth metals
metal alcalino-terreux
metal alcalinoterreo
metales alcalinoterreos
metaux alcalino-terreux
CHEBI:22313
alkaline earth metal atom
alkaline earth metals
IUPAC
Erdalkalimetall
ChEBI
Erdalkalimetalle
ChEBI
alkaline earth metal
ChEBI
alkaline-earth metal
ChEBI
alkaline-earth metals
ChEBI
metal alcalino-terreux
ChEBI
metal alcalinoterreo
ChEBI
metales alcalinoterreos
ChEBI
metaux alcalino-terreux
ChEBI
alkali metals
chebi_ontology
Alkalimetall
Alkalimetalle
alkali metal
metal alcalin
metal alcalino
metales alcalinos
metaux alcalins
CHEBI:22314
alkali metal atom
alkali metals
IUPAC
Alkalimetall
ChEBI
Alkalimetalle
ChEBI
alkali metal
ChEBI
metal alcalin
ChEBI
metal alcalino
ChEBI
metales alcalinos
ChEBI
metaux alcalins
ChEBI
Any of the naturally occurring, basic nitrogen compounds (mostly heterocyclic) occurring mostly in the plant kingdom, but also found in bacteria, fungi, and animals. By extension, certain neutral compounds biogenetically related to basic alkaloids are also classed as alkaloids. Amino acids, peptides, proteins, nucleotides, nucleic acids, amino sugars and antibiotics are not normally regarded as alkaloids. Compounds in which the nitrogen is exocyclic (dopamine, mescaline, serotonin, etc.) are usually classed as amines rather than alkaloids.
Wikipedia:Alkaloid
Alkaloid
alkaloids
chebi_ontology
Alkaloide
alcaloide
alcaloides
CHEBI:22315
alkaloid
Alkaloid
ChEBI
alkaloids
IUPAC
Alkaloide
ChEBI
alcaloide
ChEBI
alcaloides
ChEBI
chebi_ontology
aminoglycans
CHEBI:22506
aminoglycan
aminoglycans
ChEBI
A monoatomic or polyatomic species having one or more elementary charges of the electron.
Anion
anion
chebi_ontology
Anionen
aniones
anions
CHEBI:22563
anion
Anion
ChEBI
anion
ChEBI
anion
IUPAC
Anionen
ChEBI
aniones
ChEBI
anions
IUPAC
A substance that opposes oxidation or inhibits reactions brought about by dioxygen or peroxides.
chebi_ontology
antioxidants
antioxydant
antoxidant
CHEBI:22586
antioxidant
antioxidants
ChEBI
antioxydant
ChEBI
antoxidant
ChEBI
A molecular entity having an available pair of electrons capable of forming a covalent bond with a hydron (Bronsted base) or with the vacant orbital of some other molecular entity (Lewis base).
KEGG:C00701
Base
base
chebi_ontology
Base1
Base2
Basen
Nucleobase
bases
CHEBI:22695
base
Base
ChEBI
base
ChEBI
base
IUPAC
Base1
KEGG_COMPOUND
Base2
KEGG_COMPOUND
Basen
ChEBI
Nucleobase
KEGG_COMPOUND
bases
ChEBI
chebi_ontology
benzopyrroles
CHEBI:22728
benzopyrrole
benzopyrroles
ChEBI
Any compound that produces a peak used as reference frequency in the delta chemical shift scale.
Any compound that produces a peak used to reference an NMR spectrum during data pre-processing.
chebi_ontology
NMR chemical shift reference compounds
NMR chemical shift standard
NMR chemical shift standards
NMR internal standard
NMR internal standards
NMR reference standard
NMR reference standards
CHEBI:228364
NMR chemical shift reference compound
NMR chemical shift reference compounds
ChEBI
NMR chemical shift standard
ChEBI
NMR chemical shift standards
ChEBI
NMR internal standard
ChEBI
NMR internal standards
ChEBI
NMR reference standard
ChEBI
NMR reference standards
ChEBI
A sodium salt of the conjugate of any bile acid with either glycine or taurine.
KEGG:C01558
chebi_ontology
Bile acid
bile salts
CHEBI:22868
bile salt
Bile acid
KEGG_COMPOUND
bile salts
ChEBI
0
Br
InChI=1S/Br
WKBOTKDWSSQWDR-UHFFFAOYSA-N
79.90400
78.91834
[Br]
WebElements:Br
bromine
chebi_ontology
35Br
Br
Brom
brome
bromine
bromo
bromum
CHEBI:22927
bromine atom
bromine
IUPAC
35Br
IUPAC
Br
ChEBI
Brom
ChEBI
brome
ChEBI
bromine
ChEBI
bromo
ChEBI
bromum
ChEBI
0
Cd
InChI=1S/Cd
BDOSMKKIYDKNTQ-UHFFFAOYSA-N
112.41100
113.90336
[Cd]
CAS:7440-43-9
KEGG:C01413
WebElements:Cd
cadmium
chebi_ontology
48Cd
Cd
Kadmium
cadmio
cadmium
CHEBI:22977
cadmium atom
CAS:7440-43-9
ChemIDplus
CAS:7440-43-9
KEGG COMPOUND
CAS:7440-43-9
NIST Chemistry WebBook
cadmium
IUPAC
48Cd
IUPAC
Cd
IUPAC
Kadmium
NIST_Chemistry_WebBook
cadmio
ChEBI
cadmium
ChEBI
0
Ca
InChI=1S/Ca
OYPRJOBELJOOCE-UHFFFAOYSA-N
40.07800
39.96259
[Ca]
CAS:7440-70-2
DrugBank:DB01373
KEGG:C00076
WebElements:Ca
calcium
chebi_ontology
20Ca
Ca
Calcium
Kalzium
calcio
calcium
CHEBI:22984
calcium atom
CAS:7440-70-2
ChemIDplus
calcium
IUPAC
20Ca
IUPAC
Ca
IUPAC
Ca
UniProt
Calcium
KEGG_COMPOUND
Kalzium
ChEBI
calcio
ChEBI
calcium
ChEBI
The univalent carboacyl group formed by loss of -OH from the carboxy group of carbamic acid.
0
CH2NO
44.03272
44.01364
*C(N)=O
PMID:24168430
carbamoyl
chebi_ontology
-C(O)NH2
-CONH2
aminocarbonyl
carbamyl
carbamyl group
carboxamide
CHEBI:23004
carbamoyl group
PMID:24168430
Europe PMC
carbamoyl
IUPAC
-C(O)NH2
ChEBI
-CONH2
IUPAC
aminocarbonyl
IUPAC
carbamyl
ChEBI
carbamyl group
ChEBI
carboxamide
IUPAC
carbon oxide
0
CO
28.01010
27.99491
O=C(*)*
carbonyl
carbonyl group
chebi_ontology
>C=O
CHEBI:23019
carbonyl group
carbonyl
IUPAC
carbonyl group
ChEBI
carbonyl group
UniProt
>C=O
IUPAC
chloride salt
0
Cl
InChI=1S/Cl
ZAMOUSCENKQFHK-UHFFFAOYSA-N
35.45270
34.96885
[Cl]
WebElements:Cl
chlorine
chebi_ontology
17Cl
Chlor
Cl
chlore
chlorine
chlorum
cloro
CHEBI:23116
chlorine atom
chlorine
IUPAC
17Cl
IUPAC
Chlor
ChEBI
Cl
IUPAC
chlore
ChEBI
chlorine
ChEBI
chlorum
ChEBI
cloro
ChEBI
chlorine molecular entity
An organic molecule or ion (usually a metal ion) that is required by an enzyme for its activity. It may be attached either loosely (coenzyme) or tightly (prosthetic group).
Wikipedia:Cofactor_(biochemistry)
cofactor
cofactors
chebi_ontology
CHEBI:23357
cofactor
cofactor
IUPAC
cofactors
IUPAC
Any constitutionally or isotopically distinct atom, molecule, ion, ion pair, radical, radical ion, complex, conformer etc., identifiable as a separately distinguishable entity.
molecular entity
chebi_ontology
entidad molecular
entidades moleculares
entite moleculaire
molecular entities
molekulare Entitaet
CHEBI:23367
molecular entity
molecular entity
IUPAC
entidad molecular
IUPAC
entidades moleculares
IUPAC
entite moleculaire
IUPAC
molecular entities
IUPAC
molekulare Entitaet
ChEBI
chebi_ontology
Cyclopeptid
Zyklopeptid
cyclic peptides
peptide cyclique
peptido ciclico
CHEBI:23449
cyclic peptide
Cyclopeptid
ChEBI
Zyklopeptid
ChEBI
cyclic peptides
ChEBI
peptide cyclique
IUPAC
peptido ciclico
IUPAC
Any substance which when absorbed into a living organism may modify one or more of its functions. The term is generally accepted for a substance taken for a therapeutic purpose, but is also commonly used for abused substances.
chebi_ontology
drugs
medicine
CHEBI:23888
drug
drugs
ChEBI
medicine
ChEBI
chebi_ontology
monoatomic cations
CHEBI:23906
monoatomic cation
monoatomic cations
ChEBI
A compound or agent that combines with an enzyme in such a manner as to prevent the normal substrate-enzyme combination and the catalytic reaction.
enzyme inhibitor
chebi_ontology
enzyme inhibitors
inhibidor enzimatico
inhibidores enzimaticos
inhibiteur enzymatique
inhibiteurs enzymatiques
CHEBI:23924
enzyme inhibitor
enzyme inhibitor
IUPAC
enzyme inhibitors
ChEBI
inhibidor enzimatico
ChEBI
inhibidores enzimaticos
ChEBI
inhibiteur enzymatique
ChEBI
inhibiteurs enzymatiques
ChEBI
0
F
InChI=1S/F
YCKRFDGAMUMZLT-UHFFFAOYSA-N
18.99840
18.99840
[F]
CAS:7782-41-4
WebElements:F
fluorine
chebi_ontology
9F
F
Fluor
fluor
fluorine
fluorum
CHEBI:24061
fluorine atom
CAS:7782-41-4
ChemIDplus
fluorine
IUPAC
9F
IUPAC
F
IUPAC
Fluor
ChemIDplus
fluor
ChEBI
fluorine
ChEBI
fluorum
ChEBI
chebi_ontology
CHEBI:24384
glycogens
A chemical entity is a physical entity of interest in chemistry including molecular entities, parts thereof, and chemical substances.
chemical entity
chebi_ontology
CHEBI:24431
chemical entity
chemical entity
UniProt
A role played by the molecular entity or part thereof within a biological context.
chebi_ontology
biological function
CHEBI:24432
biological role
biological function
ChEBI
A defined linked collection of atoms or a single atom within a molecular entity.
group
chebi_ontology
Gruppe
Rest
groupe
grupo
grupos
CHEBI:24433
group
group
IUPAC
Gruppe
ChEBI
Rest
ChEBI
groupe
IUPAC
grupo
IUPAC
grupos
IUPAC
halogen molecular entity
halogen
halogens
chebi_ontology
Halogene
group 17 elements
group VII elements
halogene
halogenes
halogeno
halogenos
CHEBI:24473
halogen
halogen
IUPAC
halogens
IUPAC
Halogene
ChEBI
group 17 elements
ChEBI
group VII elements
ChEBI
halogene
ChEBI
halogenes
ChEBI
halogeno
ChEBI
halogenos
ChEBI
A cyclic compound having as ring members atoms of carbon and at least of one other element.
chebi_ontology
organic heterocycle
organic heterocyclic compounds
CHEBI:24532
organic heterocyclic compound
organic heterocycle
ChEBI
organic heterocyclic compounds
ChEBI
A heterodetic cyclic peptide is a peptide consisting only of amino-acid residues, but in which the linkages forming the ring are not solely peptide bonds; one or more is an isopeptide, disulfide, ester, or other bond.
heterodetic cyclic peptide
chebi_ontology
heterodetic cyclic peptides
peptide cyclique heterodetique
peptido ciclico heterodetico
CHEBI:24533
heterodetic cyclic peptide
heterodetic cyclic peptide
IUPAC
heterodetic cyclic peptides
ChEBI
peptide cyclique heterodetique
IUPAC
peptido ciclico heterodetico
IUPAC
Originally referring to an endogenous compound that is formed in specialized organ or group of cells and carried to another organ or group of cells, in the same organism, upon which it has a specific regulatory function, the term is now commonly used to include non-endogenous, semi-synthetic and fully synthetic analogues of such compounds.
chebi_ontology
endocrine
hormones
CHEBI:24621
hormone
endocrine
ChEBI
hormones
ChEBI
Nuclear particle of charge number +1, spin 1/2 and rest mass of 1.007276470(12) u.
+1
[1H]
InChI=1S/p+1/i/hH
GPRLSGONYQIRFK-FTGQXOHASA-N
1.007
1.00728
[1H+]
CAS:12408-02-5
KEGG:C00080
protium(1+)
proton
chebi_ontology
(1)1H(+)
(1)H(+)
p
p(+)
CHEBI:24636
proton
CAS:12408-02-5
ChemIDplus
CAS:12408-02-5
NIST Chemistry WebBook
protium(1+)
IUPAC
proton
ChEBI
proton
IUPAC
(1)1H(+)
IUPAC
(1)H(+)
IUPAC
p
IUPAC
p(+)
IUPAC
Hydroxides are chemical compounds containing a hydroxy group or salts containing hydroxide (OH(-)).
chebi_ontology
CHEBI:24651
hydroxides
Any member of the class of 5beta-cholanic acids carrying at least one hydroxy group at unspecified position.
chebi_ontology
hydroxy-5beta-cholanic acids
CHEBI:24663
hydroxy-5beta-cholanic acid
hydroxy-5beta-cholanic acids
ChEBI
Any compound containing an indole skeleton.
chebi_ontology
CHEBI:24828
indoles
A compound which contains oxygen, at least one other element, and at least one hydrogen bound to oxygen, and which produces a conjugate base by loss of positive hydrogen ion(s) (hydrons).
oxoacid
oxoacids
chebi_ontology
oxacids
oxiacids
oxo acid
oxy-acids
oxyacids
CHEBI:24833
oxoacid
oxoacid
IUPAC
oxoacids
IUPAC
oxacids
ChEBI
oxiacids
ChEBI
oxo acid
ChEBI
oxy-acids
ChEBI
oxyacids
ChEBI
chebi_ontology
inorganic anions
CHEBI:24834
inorganic anion
inorganic anions
ChEBI
A molecular entity that contains no carbon.
chebi_ontology
anorganische Verbindungen
inorganic compounds
inorganic entity
inorganic molecular entities
inorganics
CHEBI:24835
inorganic molecular entity
anorganische Verbindungen
ChEBI
inorganic compounds
ChEBI
inorganic entity
ChEBI
inorganic molecular entities
ChEBI
inorganics
ChEBI
chebi_ontology
inorganic oxides
CHEBI:24836
inorganic oxide
inorganic oxides
ChEBI
inorganic salt
Chemical element with atomic number 53.
0
I
InChI=1S/I
ZCYVEMRRCGMTRW-UHFFFAOYSA-N
126.90447
126.90447
[I]
WebElements:I
iodine
chebi_ontology
53I
I
Iod
J
Jod
iode
iodine
iodium
yodo
CHEBI:24859
iodine atom
iodine
IUPAC
53I
IUPAC
I
ChEBI
Iod
ChEBI
J
ChEBI
Jod
ChEBI
iode
ChEBI
iodine
ChEBI
iodium
ChEBI
yodo
ChEBI
A salt is an assembly of cations and anions.
salt
chebi_ontology
Salz
Salze
ionic compound
ionic compounds
sal
sales
salts
sel
sels
CHEBI:24866
salt
salt
IUPAC
Salz
ChEBI
Salze
ChEBI
ionic compound
ChEBI
ionic compounds
ChEBI
sal
ChEBI
sales
ChEBI
salts
ChEBI
sel
ChEBI
sels
ChEBI
chebi_ontology
monoatomic ions
CHEBI:24867
monoatomic ion
monoatomic ions
ChEBI
chebi_ontology
organic salts
organisches Salz
CHEBI:24868
organic salt
organic salts
ChEBI
organisches Salz
ChEBI
A molecular entity having a net electric charge.
Ion
ion
chebi_ontology
Ionen
iones
ions
CHEBI:24870
ion
Ion
ChEBI
ion
ChEBI
ion
IUPAC
Ionen
ChEBI
iones
ChEBI
ions
ChEBI
iron molecular entity
0
Pb
InChI=1S/Pb
WABPQHHGFIMREM-UHFFFAOYSA-N
207.20000
207.97665
[Pb]
KEGG:C06696
WebElements:Pb
lead
chebi_ontology
82Pb
Blei
Pb
lead
plomb
plomo
plumbum
CHEBI:25016
lead atom
lead
IUPAC
82Pb
IUPAC
Blei
ChEBI
Pb
IUPAC
lead
ChEBI
plomb
ChEBI
plomo
ChEBI
plumbum
IUPAC
chebi_ontology
CHEBI:25046
linear tetrapyrrole
0
Mg
InChI=1S/Mg
FYYHWMGAXLPEAU-UHFFFAOYSA-N
24.30500
23.98504
[Mg]
CAS:7439-95-4
DrugBank:DB01378
Gmelin:16207
KEGG:C00305
WebElements:Mg
magnesium
chebi_ontology
12Mg
Magnesium
Mg
magnesio
magnesium
CHEBI:25107
magnesium atom
CAS:7439-95-4
ChemIDplus
Gmelin:16207
Gmelin
magnesium
IUPAC
12Mg
IUPAC
Magnesium
ChEBI
Mg
IUPAC
Mg
UniProt
magnesio
ChEBI
magnesium
ChEBI
0
Hg
InChI=1S/Hg
QSHDDOUJBYECFT-UHFFFAOYSA-N
200.59000
201.97064
[Hg]
CAS:7439-97-6
WebElements:Hg
mercury
chebi_ontology
80Hg
Hg
Quecksilber
azogue
hydrargyrum
liquid silver
mercure
mercurio
mercury
quicksilver
CHEBI:25195
mercury atom
CAS:7439-97-6
ChemIDplus
mercury
IUPAC
80Hg
IUPAC
Hg
IUPAC
Quecksilber
ChemIDplus
azogue
ChEBI
hydrargyrum
IUPAC
liquid silver
ChemIDplus
mercure
ChemIDplus
mercurio
ChEBI
mercury
ChEBI
quicksilver
ChemIDplus
Any intermediate or product resulting from metabolism. The term 'metabolite' subsumes the classes commonly known as primary and secondary metabolites.
CHEBI:26619
CHEBI:35220
metabolite
chebi_ontology
metabolites
primary metabolites
secondary metabolites
CHEBI:25212
metabolite
metabolite
IUPAC
metabolites
ChEBI
primary metabolites
ChEBI
secondary metabolites
ChEBI
chebi_ontology
a metal cation
metal cations
CHEBI:25213
metal cation
a metal cation
UniProt
metal cations
ChEBI
A molecule all atoms of which have the same atomic number.
chebi_ontology
homoatomic molecule
homoatomic molecules
CHEBI:25362
elemental molecule
homoatomic molecule
ChEBI
homoatomic molecules
ChEBI
Any polyatomic entity that is an electrically neutral entity consisting of more than one atom.
molecule
chebi_ontology
Molekuel
molecula
molecules
neutral molecular compounds
CHEBI:25367
molecule
molecule
IUPAC
Molekuel
ChEBI
molecula
IUPAC
molecules
IUPAC
neutral molecular compounds
IUPAC
A group of neurotransmitters and neuromodulators that contain one amino group that is connected to an aromatic ring by ethylene group (-CH2-CH2-). Monoamines are derived from the aromatic amino acids phenylalanine, tyrosine, histidine and tryptophan.
chebi_ontology
monamines
monoamines
CHEBI:25375
monoamine molecular messenger
monamines
ChEBI
monoamines
ChEBI
An oxoacid containing a single carboxy group.
chebi_ontology
monocarboxylic acids
CHEBI:25384
monocarboxylic acid
monocarboxylic acids
ChEBI
+1
0.00000
[*+]
chebi_ontology
monoatomic monocations
monovalent inorganic cations
CHEBI:25414
monoatomic monocation
monoatomic monocations
ChEBI
monovalent inorganic cations
ChEBI
An endogenous compound that is used to transmit information across the synapse between a neuron and another cell.
Wikipedia:Neurotransmitter
chebi_ontology
neurotransmitters
CHEBI:25512
neurotransmitter
neurotransmitters
ChEBI
0
N
14.007
14.00307
WebElements:N
nitrogen
chebi_ontology
7N
N
Stickstoff
azote
nitrogen
nitrogeno
CHEBI:25555
nitrogen atom
nitrogen
IUPAC
7N
IUPAC
N
IUPAC
Stickstoff
ChEBI
azote
IUPAC
nitrogen
ChEBI
nitrogeno
ChEBI
nonmetal
chebi_ontology
Nichtmetall
Nichtmetalle
no metal
no metales
non-metal
non-metaux
nonmetal
nonmetals
CHEBI:25585
nonmetal atom
nonmetal
IUPAC
Nichtmetall
ChEBI
Nichtmetalle
ChEBI
no metal
ChEBI
no metales
ChEBI
non-metal
ChEBI
non-metaux
ChEBI
nonmetal
ChEBI
nonmetals
ChEBI
Any organic ion with a net negative charge.
chebi_ontology
organic anions
CHEBI:25696
organic anion
organic anions
ChEBI
Any organic ion with a net positive charge.
chebi_ontology
organic cations
CHEBI:25697
organic cation
organic cations
ChEBI
chebi_ontology
organic ions
CHEBI:25699
organic ion
organic ions
ChEBI
organic oxide
Compounds of the general formula SO3HOR where R is an organyl group
chebi_ontology
organic sulfates
CHEBI:25704
organic sulfate
organic sulfates
ChEBI
An oxide is a chemical compound of oxygen with other chemical elements.
oxide
chebi_ontology
oxides
CHEBI:25741
oxide
oxide
ChEBI
oxides
ChEBI
0
O
InChI=1S/O
QVGXLLKOCUKJST-UHFFFAOYSA-N
15.99940
15.99491
[O]
KEGG:C00007
WebElements:O
oxygen
chebi_ontology
8O
O
Sauerstoff
oxigeno
oxygen
oxygene
CHEBI:25805
oxygen atom
oxygen
IUPAC
8O
IUPAC
O
IUPAC
Sauerstoff
ChEBI
oxigeno
ChEBI
oxygen
ChEBI
oxygene
ChEBI
oxygen molecular entity
chebi_ontology
oxygen molecular entities
CHEBI:25806
oxygen molecular entity
oxygen molecular entity
ChEBI
oxygen molecular entities
ChEBI
Any peptide with hormonal activity in animals, whether endocrine, neuroendocrine, or paracrine.
chebi_ontology
peptide hormones
polypeptide hormone
CHEBI:25905
peptide hormone
peptide hormones
ChEBI
polypeptide hormone
ChEBI
0
K
InChI=1S/K
ZLMJMSJWJFRBEC-UHFFFAOYSA-N
39.09830
38.96371
[K]
CAS:7440-09-7
DrugBank:DB01345
KEGG:C00238
WebElements:K
potassium
chebi_ontology
19K
K
Kalium
kalium
potasio
potassium
CHEBI:26216
potassium atom
CAS:7440-09-7
ChemIDplus
potassium
IUPAC
19K
IUPAC
K
IUPAC
Kalium
ChemIDplus
kalium
IUPAC
potasio
ChEBI
potassium
ChEBI
0
Na
InChI=1S/Na
KEAYESYHFKHZAL-UHFFFAOYSA-N
22.98977
22.98977
[Na]
CAS:7440-23-5
Gmelin:16221
KEGG:C01330
WebElements:Na
sodium
chebi_ontology
11Na
Na
Natrium
natrium
sodio
sodium
CHEBI:26708
sodium atom
CAS:7440-23-5
ChemIDplus
Gmelin:16221
Gmelin
sodium
IUPAC
11Na
IUPAC
Na
IUPAC
Natrium
ChemIDplus
natrium
IUPAC
sodio
ChemIDplus
sodium
ChEBI
sodium chloride
chebi_ontology
sodium compounds
sodium molecular entities
CHEBI:26712
sodium molecular entity
sodium compounds
ChEBI
sodium molecular entities
ChEBI
Any alkali metal salt having sodium(1+) as the cation.
chebi_ontology
Natriumsalz
Natriumsalze
sodium salts
CHEBI:26714
sodium salt
Natriumsalz
ChEBI
Natriumsalze
ChEBI
sodium salts
ChEBI
Any steroid that acts as hormone.
chebi_ontology
Steroidhormon
Steroidhormone
hormona esteroide
hormonas esteroideas
hormone steroide
hormones steroides
steroid hormones
CHEBI:26764
steroid hormone
Steroidhormon
ChEBI
Steroidhormone
ChEBI
hormona esteroide
ChEBI
hormonas esteroideas
ChEBI
hormone steroide
ChEBI
hormones steroides
ChEBI
steroid hormones
ChEBI
An ester of an alcohol and sulfuric acid.
chebi_ontology
sulfate ester
sulfuric acid ester
sulfuric acid esters
CHEBI:26819
sulfuric ester
sulfate ester
ChEBI
sulfuric acid ester
ChEBI
sulfuric acid esters
ChEBI
Salts and esters of sulfuric acid
sulfates
chebi_ontology
sulfuric acid derivative
sulphates
CHEBI:26820
sulfates
sulfates
ChEBI
sulfuric acid derivative
ChEBI
sulphates
ChEBI
0
S
InChI=1S/S
NINIDFKCEFEMDL-UHFFFAOYSA-N
32.06600
31.97207
[S]
CAS:7704-34-9
KEGG:C00087
KEGG:D06527
PPDB:605
WebElements:S
sulfur
chebi_ontology
16S
Elemental sulfur
S
Schwefel
azufre
soufre
sulfur
sulphur
theion
CHEBI:26833
sulfur atom
CAS:7704-34-9
ChemIDplus
CAS:7704-34-9
NIST Chemistry WebBook
sulfur
IUPAC
16S
IUPAC
Elemental sulfur
KEGG_COMPOUND
S
IUPAC
S
KEGG_COMPOUND
Schwefel
ChEBI
azufre
ChEBI
soufre
ChEBI
sulfur
ChEBI
sulfur
UniProt
sulphur
ChEBI
theion
IUPAC
sulfur molecular entity
chebi_ontology
sulfur molecular entities
CHEBI:26835
sulfur molecular entity
sulfur molecular entity
ChEBI
sulfur molecular entities
ChEBI
A sulfur oxoacid that consists of two oxo and two hydroxy groups joined covalently to a central sulfur atom.
CAS:7664-93-9
Gmelin:2122
KEGG:C00059
KEGG:D05963
KNApSAcK:C00007530
MolBase:4
PMID:13568755
PMID:16122922
PMID:19397353
PMID:22047659
PMID:22136045
PMID:22204399
PMID:22267186
PMID:22296037
PMID:22364556
PMID:22435616
PPDB:606
Reaxys:2037554
Wikipedia:Sulfuric_acid
Sulfuric acid
dihydrogen tetraoxosulfate
dihydroxidodioxidosulfur
hydrogen tetraoxosulfate(2-)
hydrogen tetraoxosulfate(VI)
sulfuric acid
tetraoxosulfuric acid
chebi_ontology
Acide sulfurique
Acido sulfurico
Acidum sulfuricum
H2SO4
Schwefelsaeureloesungen
[S(OH)2O2]
[SO2(OH)2]
sulphuric acid
CHEBI:26836
sulfuric acid
CAS:7664-93-9
ChemIDplus
CAS:7664-93-9
KEGG COMPOUND
CAS:7664-93-9
NIST Chemistry WebBook
Gmelin:2122
Gmelin
PMID:13568755
Europe PMC
PMID:16122922
Europe PMC
PMID:19397353
Europe PMC
PMID:22047659
Europe PMC
PMID:22136045
Europe PMC
PMID:22204399
Europe PMC
PMID:22267186
Europe PMC
PMID:22296037
Europe PMC
PMID:22364556
Europe PMC
PMID:22435616
Europe PMC
Reaxys:2037554
Reaxys
Sulfuric acid
KEGG_COMPOUND
dihydrogen tetraoxosulfate
IUPAC
dihydroxidodioxidosulfur
IUPAC
hydrogen tetraoxosulfate(2-)
IUPAC
hydrogen tetraoxosulfate(VI)
IUPAC
sulfuric acid
ChEBI
sulfuric acid
IUPAC
tetraoxosulfuric acid
IUPAC
Acide sulfurique
ChemIDplus
Acido sulfurico
ChemIDplus
Acidum sulfuricum
ChemIDplus
H2SO4
IUPAC
Schwefelsaeureloesungen
ChemIDplus
[S(OH)2O2]
MolBase
[SO2(OH)2]
IUPAC
sulphuric acid
MolBase
A natural pigment containing four pyrrole rings joined by one-carbon units linking position 2 of one pyrrole ring to position 5 of the next.
tetrapyrrole
tetrapyrroles
chebi_ontology
a tetrapyrrole
CHEBI:26932
tetrapyrrole
tetrapyrrole
IUPAC
tetrapyrroles
IUPAC
a tetrapyrrole
UniProt
0
Sn
InChI=1S/Sn
ATJFFYVFTNAWJD-UHFFFAOYSA-N
118.71000
119.90220
[Sn]
CAS:7440-31-5
UM-BBD_compID:c0585
WebElements:Sn
tin
chebi_ontology
50Sn
Sn
Zinn
estano
etain
stannum
tin
CHEBI:27007
tin atom
CAS:7440-31-5
ChemIDplus
UM-BBD_compID:c0585
UM-BBD
tin
IUPAC
50Sn
IUPAC
Sn
IUPAC
Zinn
ChemIDplus
estano
ChEBI
etain
ChEBI
stannum
IUPAC
tin
ChEBI
Any nutrient required in small quantities by organisms throughout their life in order to orchestrate a range of physiological functions.
Wikipedia:Micronutrient
chebi_ontology
micronutrients
trace elements
CHEBI:27027
micronutrient
micronutrients
ChEBI
trace elements
ChEBI
An element whose atom has an incomplete d sub-shell, or which can give rise to cations with an incomplete d sub-shell.
transition element
chebi_ontology
Uebergangselement
Uebergangsmetalle
metal de transicion
metal de transition
metales de transicion
metaux de transition
transition element
transition elements
transition metal
transition metals
CHEBI:27081
transition element atom
transition element
IUPAC
Uebergangselement
ChEBI
Uebergangsmetalle
ChEBI
metal de transicion
ChEBI
metal de transition
ChEBI
metales de transicion
ChEBI
metaux de transition
ChEBI
transition element
ChEBI
transition elements
ChEBI
transition metal
ChEBI
transition metals
ChEBI
Tryptamine and its substitution derivatives.
chebi_ontology
CHEBI:27162
tryptamines
chebi_ontology
heterobicyclic compounds
organic heterobicyclic compounds
CHEBI:27171
organic heterobicyclic compound
heterobicyclic compounds
ChEBI
organic heterobicyclic compounds
ChEBI
A univalent carboacyl group is a group formed by loss of OH from the carboxy group of a carboxylic acid.
chebi_ontology
univalent acyl group
univalent carboacyl groups
univalent carboxylic acyl groups
CHEBI:27207
univalent carboacyl group
univalent acyl group
ChEBI
univalent carboacyl groups
ChEBI
univalent carboxylic acyl groups
ChEBI
0
U
InChI=1S/U
JFALSRSLKYAFGM-UHFFFAOYSA-N
238.02890
238.05079
[U]
CAS:7440-61-1
WebElements:U
uranium
chebi_ontology
92U
U
Uran
uranio
uranium
CHEBI:27214
uranium atom
CAS:7440-61-1
ChemIDplus
uranium
IUPAC
92U
IUPAC
U
IUPAC
Uran
ChEBI
uranio
ChEBI
uranium
ChEBI
0
Zn
InChI=1S/Zn
HCHKCACWOHOZIP-UHFFFAOYSA-N
65.39000
63.92914
[Zn]
CAS:7440-66-6
Gmelin:16321
KEGG:C00038
PDBeChem:ZN
WebElements:Zn
zinc
chebi_ontology
30Zn
Zink
Zn
Zn(II)
Zn2+
cinc
zinc
zincum
CHEBI:27363
zinc atom
CAS:7440-66-6
ChemIDplus
CAS:7440-66-6
KEGG COMPOUND
Gmelin:16321
Gmelin
zinc
IUPAC
30Zn
IUPAC
Zink
ChEBI
Zn
IUPAC
Zn(II)
KEGG_COMPOUND
Zn2+
KEGG_COMPOUND
cinc
ChEBI
zinc
ChEBI
zincum
ChEBI
A neutral compound having formal unit electrical charges of opposite sign on non-adjacent atoms. Sometimes referred to as inner salts, dipolar ions (a misnomer).
zwitterion
zwitterions
chebi_ontology
compose zwitterionique
compuestos zwitterionicos
zwitteriones
zwitterionic compounds
CHEBI:27369
zwitterion
zwitterion
IUPAC
zwitterions
IUPAC
compose zwitterionique
IUPAC
compuestos zwitterionicos
IUPAC
zwitteriones
IUPAC
zwitterionic compounds
IUPAC
0
B
InChI=1S/B
ZOXJGFHDIHLPTG-UHFFFAOYSA-N
10.81100
11.00930
[B]
CHEBI:22915
CHEBI:3152
CAS:7440-42-8
KEGG:C06266
WebElements:B
boron
chebi_ontology
5B
B
Bor
Boron
boracium
bore
boro
boron
CHEBI:27560
boron atom
CAS:7440-42-8
ChemIDplus
CAS:7440-42-8
KEGG COMPOUND
boron
IUPAC
5B
IUPAC
B
KEGG_COMPOUND
Bor
ChEBI
Boron
KEGG_COMPOUND
boracium
ChEBI
bore
ChEBI
boro
ChEBI
boron
ChEBI
0
As
InChI=1S/As
RQNWIZPPADIBDY-UHFFFAOYSA-N
74.92160
74.92159
[As]
CHEBI:22630
CHEBI:2845
CAS:7440-38-2
KEGG:C06269
WebElements:As
arsenic
chebi_ontology
33As
Arsen
Arsenic
As
arsenic
arsenico
arsenicum
CHEBI:27563
arsenic atom
CAS:7440-38-2
ChemIDplus
CAS:7440-38-2
KEGG COMPOUND
arsenic
IUPAC
33As
IUPAC
Arsen
ChemIDplus
Arsenic
KEGG_COMPOUND
As
KEGG_COMPOUND
arsenic
ChEBI
arsenico
ChEBI
arsenicum
ChEBI
0
Se
InChI=1S/Se
BUGBHKTXTAQXES-UHFFFAOYSA-N
78.96000
79.91652
[Se]
CHEBI:26627
CHEBI:9091
CAS:7782-49-2
DrugBank:DB11135
FooDB:FDB013400
HMDB:HMDB0001349
KEGG:C01529
WebElements:Se
Wikipedia:Selenium
selenium
chebi_ontology
34Se
Se
Selen
Selenium
selenio
selenium
CHEBI:27568
selenium atom
CAS:7782-49-2
ChemIDplus
CAS:7782-49-2
NIST Chemistry WebBook
selenium
IUPAC
34Se
IUPAC
Se
IUPAC
Selen
ChemIDplus
Selenium
KEGG_COMPOUND
selenio
ChEBI
selenium
ChEBI
0
Si
InChI=1S/Si
XUIMIQQOPSSXEZ-UHFFFAOYSA-N
28.08550
27.97693
[Si]
CHEBI:26676
CHEBI:9140
CAS:7440-21-3
KEGG:C06263
WebElements:Si
silicon
chebi_ontology
14Si
Si
Silicon
Silizium
silicio
silicium
silicon
CHEBI:27573
silicon atom
CAS:7440-21-3
ChemIDplus
silicon
IUPAC
14Si
IUPAC
Si
IUPAC
Si
KEGG_COMPOUND
Silicon
KEGG_COMPOUND
Silizium
ChEBI
silicio
ChEBI
silicium
ChEBI
silicon
ChEBI
0
C
InChI=1S/C
OKTJSMMVPCPJKN-UHFFFAOYSA-N
12.01070
12.00000
[C]
CHEBI:23009
CHEBI:3399
CAS:7440-44-0
KEGG:C06265
WebElements:C
carbon
chebi_ontology
6C
C
Carbon
Kohlenstoff
carbon
carbone
carbonium
carbono
CHEBI:27594
carbon atom
CAS:7440-44-0
ChemIDplus
CAS:7440-44-0
KEGG COMPOUND
carbon
IUPAC
6C
IUPAC
C
IUPAC
C
KEGG_COMPOUND
Carbon
KEGG_COMPOUND
Kohlenstoff
ChEBI
carbon
ChEBI
carbone
ChEBI
carbonium
ChEBI
carbono
ChEBI
A cobalt group element atom that has atomic number 27.
0
Co
InChI=1S/Co
GUTLYIVDDKVIGB-UHFFFAOYSA-N
58.93320
58.93319
[Co]
CHEBI:23335
CHEBI:3788
CAS:7440-48-4
KEGG:C00175
KEGG:C19171
PDBeChem:3CO
WebElements:Co
cobalt
chebi_ontology
27Co
Co
Cobalt
Kobalt
cobalt
cobalto
cobaltum
CHEBI:27638
cobalt atom
CAS:7440-48-4
ChemIDplus
CAS:7440-48-4
KEGG COMPOUND
CAS:7440-48-4
NIST Chemistry WebBook
cobalt
IUPAC
27Co
IUPAC
Co
IUPAC
Co
UniProt
Cobalt
KEGG_COMPOUND
Kobalt
NIST_Chemistry_WebBook
cobalt
ChEBI
cobalto
ChEBI
cobaltum
ChEBI
0
V
InChI=1S/V
LEONUFNNVUYDNQ-UHFFFAOYSA-N
50.94150
50.94396
[V]
CHEBI:27274
CHEBI:9930
CAS:7440-62-2
KEGG:C06267
WebElements:V
vanadium
chebi_ontology
23V
V
Vanadium
vanadio
vanadium
CHEBI:27698
vanadium atom
CAS:7440-62-2
ChemIDplus
CAS:7440-62-2
KEGG COMPOUND
CAS:7440-62-2
NIST Chemistry WebBook
vanadium
IUPAC
23V
IUPAC
V
IUPAC
V
KEGG_COMPOUND
Vanadium
KEGG_COMPOUND
vanadio
ChEBI
vanadium
ChEBI
0
W
InChI=1S/W
WFKWXMTUELFFGS-UHFFFAOYSA-N
183.84000
183.95093
[W]
CHEBI:27170
CHEBI:9779
CAS:7440-33-7
Gmelin:16317
KEGG:C00753
PDBeChem:W
WebElements:W
Tungsten
tungsten
wolfram
chebi_ontology
74W
W
Wolfram
tungsten atom
tungstene
tungsteno
volframio
wolframio
wolframium
CHEBI:27998
tungsten
CAS:7440-33-7
ChemIDplus
CAS:7440-33-7
KEGG COMPOUND
CAS:7440-33-7
NIST Chemistry WebBook
Gmelin:16317
Gmelin
Tungsten
KEGG_COMPOUND
tungsten
IUPAC
wolfram
IUPAC
74W
IUPAC
W
IUPAC
W
UniProt
Wolfram
NIST_Chemistry_WebBook
tungsten atom
ChEBI
tungstene
ChEBI
tungsteno
ChEBI
volframio
ChEBI
wolframio
ChEBI
wolframium
ChEBI
A chromium group element atom that has atomic number 24.
0
Cr
InChI=1S/Cr
VYZAMTAEIAYCRO-UHFFFAOYSA-N
51.99610
51.94051
[Cr]
CHEBI:23235
CHEBI:3678
CAS:7440-47-3
KEGG:C06268
WebElements:Cr
chromium
chebi_ontology
24Cr
Chrom
Chromium
Cr
chrome
chromium
cromo
CHEBI:28073
chromium atom
CAS:7440-47-3
ChemIDplus
CAS:7440-47-3
KEGG COMPOUND
chromium
IUPAC
24Cr
IUPAC
Chrom
ChemIDplus
Chromium
KEGG_COMPOUND
Cr
IUPAC
Cr
KEGG_COMPOUND
chrome
ChEBI
chromium
ChEBI
cromo
ChEBI
A polydisperse, highly branched glucan composed of chains of D-glucopyranose residues in alpha(1->4) glycosidic linkage, joined together by alpha(1->6) glycosidic linkages. A small number of alpha(1->3) glycosidic linkages and some cumulative alpha(1->6) links also may occur. The branches in glycogen typically contain 8 to 12 glucose residues.
CHEBI:24379
CHEBI:5466
CAS:9005-79-2
GlyGen:G99991IU
GlyTouCan:G99991IU
HMDB:HMDB0000757
KEGG:C00182
MetaCyc:CPD0-971
Wikipedia:Glycogen
Glycogen
chebi_ontology
WURCS=2.0/1,4,3/[a2122h-1a_1-5]/1-1-1-1/a4-b1_b4-c1_b6-d1
animal starch
liver starch
CHEBI:28087
glycogen
CAS:9005-79-2
ChemIDplus
CAS:9005-79-2
KEGG COMPOUND
Glycogen
KEGG_COMPOUND
WURCS=2.0/1,4,3/[a2122h-1a_1-5]/1-1-1-1/a4-b1_b4-c1_b6-d1
GlyTouCan
animal starch
ChemIDplus
liver starch
ChemIDplus
Chemical element (nickel group element atom) with atomic number 28.
0
Ni
InChI=1S/Ni
PXHVJJICTQNCMI-UHFFFAOYSA-N
58.69340
57.93534
[Ni]
CHEBI:25515
CHEBI:7552
CAS:7440-02-0
Gmelin:16229
KEGG:C00291
PMID:12756270
PMID:14634084
PMID:14734778
PMID:15165199
PMID:19828094
PMID:20477134
PMID:22762130
PMID:23142754
PMID:23317102
PMID:23692032
PMID:23692035
PMID:23723488
PMID:23834453
PMID:23857010
PMID:23895079
PMID:23909687
PMID:9060994
PMID:9886425
Reaxys:4122946
WebElements:Ni
Wikipedia:Nickel
nickel
chebi_ontology
28Ni
Ni
Nickel
Raney alloy
niccolum
nickel
niquel
CHEBI:28112
nickel atom
CAS:7440-02-0
ChemIDplus
CAS:7440-02-0
KEGG COMPOUND
CAS:7440-02-0
NIST Chemistry WebBook
Gmelin:16229
Gmelin
PMID:12756270
Europe PMC
PMID:14634084
Europe PMC
PMID:14734778
Europe PMC
PMID:15165199
Europe PMC
PMID:19828094
Europe PMC
PMID:20477134
Europe PMC
PMID:22762130
Europe PMC
PMID:23142754
Europe PMC
PMID:23317102
Europe PMC
PMID:23692032
Europe PMC
PMID:23692035
Europe PMC
PMID:23723488
Europe PMC
PMID:23834453
Europe PMC
PMID:23857010
Europe PMC
PMID:23895079
Europe PMC
PMID:23909687
Europe PMC
PMID:9060994
Europe PMC
PMID:9886425
Europe PMC
Reaxys:4122946
Reaxys
nickel
IUPAC
28Ni
IUPAC
Ni
IUPAC
Ni
UniProt
Nickel
ChEBI
Raney alloy
ChemIDplus
niccolum
ChEBI
nickel
ChEBI
niquel
ChEBI
A one-carbon compound that is ammonia in which one of the hydrogens is replaced by a carboxy group. Although carbamic acid derivatives are common, carbamic acid itself has never been synthesised.
0
CH3NO2
InChI=1S/CH3NO2/c2-1(3)4/h2H2,(H,3,4)
KXDHJXZQYSOELW-UHFFFAOYSA-N
61.04006
61.01638
NC(O)=O
CHEBI:22504
CHEBI:23002
CHEBI:3386
CHEBI:44573
Beilstein:1734754
CAS:463-77-4
DrugBank:DB04261
Gmelin:130345
KEGG:C01563
PDBeChem:OUT
Wikipedia:Carbamic_acid
CARBAMIC ACID
Carbamic acid
carbamic acid
chebi_ontology
Aminoameisensaeure
Aminoformic acid
Carbamate
Carbamidsaeure
CHEBI:28616
carbamic acid
Beilstein:1734754
Beilstein
CAS:463-77-4
ChemIDplus
CAS:463-77-4
KEGG COMPOUND
Gmelin:130345
Gmelin
CARBAMIC ACID
PDBeChem
Carbamic acid
KEGG_COMPOUND
carbamic acid
IUPAC
Aminoameisensaeure
ChEBI
Aminoformic acid
KEGG_COMPOUND
Carbamate
KEGG_COMPOUND
Carbamidsaeure
ChEBI
0
P
InChI=1S/P
OAICVXFJPJFONN-UHFFFAOYSA-N
30.97376
30.97376
[P]
CHEBI:26080
CHEBI:8168
CAS:7723-14-0
Gmelin:16235
KEGG:C06262
WebElements:P
phosphorus
chebi_ontology
15P
P
Phosphor
Phosphorus
fosforo
phosphore
phosphorus
CHEBI:28659
phosphorus atom
CAS:7723-14-0
ChemIDplus
CAS:7723-14-0
KEGG COMPOUND
Gmelin:16235
Gmelin
phosphorus
IUPAC
15P
IUPAC
P
IUPAC
P
KEGG_COMPOUND
Phosphor
ChEBI
Phosphorus
KEGG_COMPOUND
fosforo
ChEBI
phosphore
ChEBI
phosphorus
ChEBI
0
Mo
InChI=1S/Mo
ZOKXTWBITQBERF-UHFFFAOYSA-N
95.94000
97.90541
[Mo]
CHEBI:25369
CHEBI:49750
CHEBI:6968
CAS:7439-98-7
Gmelin:16205
KEGG:C00150
WebElements:Mo
molybdenum
chebi_ontology
42Mo
Mo
Molybdaen
Molybdenum
molibdeno
molybdene
molybdenum
CHEBI:28685
molybdenum atom
CAS:7439-98-7
ChemIDplus
CAS:7439-98-7
KEGG COMPOUND
CAS:7439-98-7
NIST Chemistry WebBook
Gmelin:16205
Gmelin
molybdenum
IUPAC
42Mo
IUPAC
Mo
IUPAC
Mo
UniProt
Molybdaen
ChEBI
Molybdenum
KEGG_COMPOUND
molibdeno
ChEBI
molybdene
ChEBI
molybdenum
ChEBI
0
Cu
InChI=1S/Cu
RYGMFSIKBFXOCR-UHFFFAOYSA-N
63.54600
62.92960
[Cu]
CHEBI:23376
CHEBI:3874
CAS:7440-50-8
Gmelin:16269
KEGG:C00070
WebElements:Cu
copper
chebi_ontology
29Cu
Copper
Cu
Kupfer
cobre
copper
cuivre
cuprum
CHEBI:28694
copper atom
CAS:7440-50-8
ChemIDplus
CAS:7440-50-8
KEGG COMPOUND
Gmelin:16269
Gmelin
copper
IUPAC
29Cu
IUPAC
Copper
KEGG_COMPOUND
Cu
ChEBI
Cu
IUPAC
Kupfer
ChEBI
cobre
ChEBI
copper
ChEBI
cuivre
ChEBI
cuprum
IUPAC
A primary amino compound that is the 5-hydroxy derivative of tryptamine.
CHEBI:1420
CHEBI:26652
CHEBI:49894
CAS:50-67-9
Gmelin:1861995
HMDB:HMDB0000259
KEGG:C00780
KNApSAcK:C00001429
LINCS:LSM-6589
MetaCyc:SEROTONIN
PDBeChem:SRO
PMID:18593914
PMID:22770225
PMID:24136337
Reaxys:143524
Wikipedia:Serotonin
3-(2-aminoethyl)-1H-indol-5-ol
SEROTONIN
Serotonin
chebi_ontology
3-(2-Aminoethyl)-1H-indol-5-ol
5-HT
5-Hydroxytryptamine
Enteramine
serotonine
thrombocytin
thrombotonin
CHEBI:28790
serotonin
CAS:50-67-9
ChemIDplus
CAS:50-67-9
KEGG COMPOUND
Gmelin:1861995
Gmelin
PMID:18593914
Europe PMC
PMID:22770225
Europe PMC
PMID:24136337
Europe PMC
Reaxys:143524
Reaxys
3-(2-aminoethyl)-1H-indol-5-ol
IUPAC
SEROTONIN
PDBeChem
Serotonin
KEGG_COMPOUND
3-(2-Aminoethyl)-1H-indol-5-ol
KEGG_COMPOUND
5-HT
IUPHAR
5-Hydroxytryptamine
KEGG_COMPOUND
Enteramine
KEGG_COMPOUND
serotonine
ChEBI
thrombocytin
ChemIDplus
thrombotonin
ChemIDplus
An onium cation obtained by protonation of ammonia.
+1
H4N
InChI=1S/H3N/h1H3/p+1
QGZKDVFQNNGYKY-UHFFFAOYSA-O
18.03850
18.03383
[H][N+]([H])([H])[H]
CHEBI:22534
CHEBI:49783
CHEBI:7435
CAS:14798-03-9
Gmelin:84
KEGG:C01342
MetaCyc:AMMONIUM
MolBase:929
PDBeChem:NH4
PMID:11319011
PMID:11341317
PMID:12096804
PMID:14512268
PMID:14879753
PMID:16345391
PMID:16903292
PMID:17392693
PMID:18515490
PMID:19199063
PMID:19596600
PMID:19682559
PMID:19716251
PMID:21993530
PMID:22265469
PMID:22524020
PMID:22562341
PMID:22631217
Reaxys:16093784
Wikipedia:Ammonium
ammonium
azanium
chebi_ontology
Ammonium(1+)
NH4(+)
NH4+
[NH4](+)
ammonium cation
ammonium ion
CHEBI:28938
ammonium
CAS:14798-03-9
ChemIDplus
CAS:14798-03-9
NIST Chemistry WebBook
Gmelin:84
Gmelin
PMID:11319011
Europe PMC
PMID:11341317
Europe PMC
PMID:12096804
Europe PMC
PMID:14512268
Europe PMC
PMID:14879753
Europe PMC
PMID:16345391
Europe PMC
PMID:16903292
Europe PMC
PMID:17392693
Europe PMC
PMID:18515490
Europe PMC
PMID:19199063
Europe PMC
PMID:19596600
Europe PMC
PMID:19682559
Europe PMC
PMID:19716251
Europe PMC
PMID:21993530
Europe PMC
PMID:22265469
Europe PMC
PMID:22524020
Europe PMC
PMID:22562341
Europe PMC
PMID:22631217
Europe PMC
Reaxys:16093784
Reaxys
ammonium
ChEBI
ammonium
IUPAC
azanium
IUPAC
Ammonium(1+)
ChemIDplus
NH4(+)
IUPAC
NH4(+)
UniProt
NH4+
KEGG_COMPOUND
[NH4](+)
MolBase
ammonium cation
ChemIDplus
ammonium ion
PDBeChem
A carboxylic acid dianion obtained by deprotonation of both carboxy groups of any dicarboxylic acid.
CHEBI:13632
CHEBI:23688
CHEBI:23689
CHEBI:38711
dicarboxylic acid dianion
chebi_ontology
a dicarboxylate
dicarboxylate
dicarboxylates
dicarboxylic acid dianions
CHEBI:28965
dicarboxylic acid dianion
dicarboxylic acid dianion
ChEBI
a dicarboxylate
UniProt
dicarboxylate
ChEBI
dicarboxylates
ChEBI
dicarboxylic acid dianions
ChEBI
CHEBI:13351
CHEBI:23017
CHEBI:23744
CHEBI:3401
CAS:463-79-6
Gmelin:25554
KEGG:C01353
PDBeChem:CO3
Carbonic acid
carbonic acid
dihydroxidooxidocarbon
chebi_ontology
Dihydrogen carbonate
H2CO3
Koehlensaeure
[CO(OH)2]
CHEBI:28976
carbonic acid
CAS:463-79-6
ChemIDplus
CAS:463-79-6
KEGG COMPOUND
Gmelin:25554
Gmelin
Carbonic acid
KEGG_COMPOUND
carbonic acid
IUPAC
dihydroxidooxidocarbon
IUPAC
Dihydrogen carbonate
KEGG_COMPOUND
H2CO3
IUPAC
H2CO3
KEGG_COMPOUND
Koehlensaeure
ChEBI
[CO(OH)2]
IUPAC
0
Al
InChI=1S/Al
XAGFODPZIPBFFR-UHFFFAOYSA-N
26.98154
26.98154
[Al]
CHEBI:22471
CHEBI:2616
CAS:7429-90-5
DrugBank:DB01370
Gmelin:16248
KEGG:C06264
WebElements:Al
aluminium
chebi_ontology
13Al
Al
Aluminium
aluminio
aluminium
aluminum
CHEBI:28984
aluminium atom
CAS:7429-90-5
ChemIDplus
CAS:7429-90-5
KEGG COMPOUND
Gmelin:16248
Gmelin
aluminium
IUPAC
13Al
IUPAC
Al
IUPAC
Al
KEGG_COMPOUND
Aluminium
ChEBI
Aluminium
KEGG_COMPOUND
aluminio
ChEBI
aluminium
ChEBI
aluminum
NIST_Chemistry_WebBook
The conjugate base formed when the carboxy group of a carboxylic acid is deprotonated.
-1
CO2R
44.00950
43.98983
[O-]C([*])=O
CHEBI:13626
CHEBI:13945
CHEBI:23026
CHEBI:58657
chebi_ontology
a carboxylate
carboxylic acid anions
carboxylic anions
CHEBI:29067
carboxylic acid anion
a carboxylate
UniProt
carboxylic acid anions
ChEBI
carboxylic anions
ChEBI
A monoatomic monocation obtained from sodium.
CHEBI:26717
CHEBI:49766
CHEBI:9175
CAS:17341-25-2
Gmelin:15196
KEGG:C01330
PDBeChem:NA
sodium cation
sodium(1+)
sodium(1+) ion
sodium(I) cation
chebi_ontology
Na(+)
Na+
SODIUM ION
CHEBI:29101
sodium(1+)
CAS:17341-25-2
ChemIDplus
CAS:17341-25-2
NIST Chemistry WebBook
Gmelin:15196
Gmelin
sodium cation
IUPAC
sodium(1+)
IUPAC
sodium(1+) ion
IUPAC
sodium(I) cation
IUPAC
Na(+)
IUPAC
Na(+)
UniProt
Na+
KEGG_COMPOUND
SODIUM ION
PDBeChem
The stable isotope of hydrogen with relative atomic mass 1.007825 and a natural abundance of 99.9885 atom percent (from Greek pirhoomegatauomicronsigma, first).
0
[1H]
InChI=1S/H/i1+0
YZCKVEUIGOORGS-IGMARMGPSA-N
1.008
1.00783
[1H]
protium
chebi_ontology
(1)1H
(1)H
hydrogen-1
protio
protium
CHEBI:29236
protium atom
protium
IUPAC
(1)1H
IUPAC
(1)H
IUPAC
hydrogen-1
ChEBI
protio
ChEBI
protium
ChEBI
The stable isotope of hydrogen with relative atomic mass 2.014102 and a natural abundance of 0.0115 atom percent (from Greek deltaepsilonupsilontauepsilonrhoomicronnu, second).
0
D
InChI=1S/H2/h1H/i1+1
UFHFLCQGNIYNRP-OUBTZVSYSA-N
2.014
2.01410
[2H]
deuterium
chebi_ontology
(2)1H
(2)H
D
Deuterium
deuterio
deuterium
heavy hydrogen
hidrogeno pesado
hydrogen-2
schwerer Wasserstoff
CHEBI:29237
deuterium atom
deuterium
IUPAC
(2)1H
IUPAC
(2)H
IUPAC
D
IUPAC
Deuterium
ChEBI
deuterio
ChEBI
deuterium
ChEBI
heavy hydrogen
ChEBI
hidrogeno pesado
ChEBI
hydrogen-2
ChEBI
schwerer Wasserstoff
ChEBI
The radioactive isotope of hydrogen with relative atomic mass 3.016049 and half-life of 12.33 years (from Greek taurhoiotatauomicronsigma, third).
0
T
InChI=1S/H2/h1H/i1+2
UFHFLCQGNIYNRP-NJFSPNSNSA-N
3.016
3.01605
[3H]
tritium
chebi_ontology
(3)1H
(3)H
T
hydrogen-3
tritio
tritium
ueberschwerer Wasserstoff
CHEBI:29238
tritium atom
tritium
IUPAC
(3)1H
IUPAC
(3)H
IUPAC
T
IUPAC
hydrogen-3
ChEBI
tritio
ChEBI
tritium
ChEBI
ueberschwerer Wasserstoff
ChEBI
0
Au
InChI=1S/Au
PCHJSUWPFVWCPO-UHFFFAOYSA-N
196.96655
196.96657
[Au]
CAS:7440-57-5
WebElements:Au
gold
chebi_ontology
79Au
Au
Gold
aurum
gold
or
oro
CHEBI:29287
gold atom
CAS:7440-57-5
ChemIDplus
gold
IUPAC
79Au
IUPAC
Au
IUPAC
Gold
ChEBI
aurum
IUPAC
gold
ChEBI
or
ChEBI
oro
ChEBI
-1
H2N
InChI=1S/H2N/h1H2/q-1
HYGWNUKOUCZBND-UHFFFAOYSA-N
16.02262
16.01927
[H][N-][H]
amide
azanide
dihydridonitrate(1-)
chebi_ontology
NH2(-)
CHEBI:29337
azanide
amide
IUPAC
azanide
IUPAC
dihydridonitrate(1-)
IUPAC
NH2(-)
IUPAC
A divalent inorganic anion resulting from the removal of two protons from ammonia.
-2
HN
InChI=1S/HN/h1H/q-2
DZQYTNGKSBCIOE-UHFFFAOYSA-N
15.01468
15.01200
[N--][H]
azanediide
hydridonitrate(2-)
chebi_ontology
NH(2-)
imide
CHEBI:29340
hydridonitrate(2-)
azanediide
IUPAC
hydridonitrate(2-)
IUPAC
NH(2-)
IUPAC
imide
IUPAC
Gmelin:508
dioxidenium
hydridodioxygen(1+)
chebi_ontology
HO2(+)
HOO(+)
[HO2](+)
CHEBI:29793
hydridodioxygen(1+)
Gmelin:508
Gmelin
dioxidenium
IUPAC
hydridodioxygen(1+)
IUPAC
HO2(+)
IUPAC
HOO(+)
ChEBI
[HO2](+)
ChEBI
A monocarboxylic acid anion resulting from the removal of a proton from the carboxy group of acetic acid.
CHEBI:13704
CHEBI:22165
CHEBI:40480
CAS:71-50-1
DrugBank:DB03166
Gmelin:1379
KEGG:C00033
MetaCyc:ACET
PDBeChem:ACT
PMID:17190852
PMID:22211106
PMID:22371380
Reaxys:1901470
UM-BBD_compID:c0050
Wikipedia:Acetate
acetate
chebi_ontology
ACETATE ION
Azetat
CH3-COO(-)
Ethanoat
MeCO2 anion
acetic acid, ion(1-)
ethanoate
CHEBI:30089
acetate
CAS:71-50-1
ChemIDplus
CAS:71-50-1
NIST Chemistry WebBook
Gmelin:1379
Gmelin
PMID:17190852
Europe PMC
PMID:22211106
Europe PMC
PMID:22371380
Europe PMC
Reaxys:1901470
Reaxys
UM-BBD_compID:c0050
UM-BBD
acetate
IUPAC
acetate
UniProt
ACETATE ION
PDBeChem
Azetat
ChEBI
CH3-COO(-)
IUPAC
Ethanoat
ChEBI
MeCO2 anion
NIST_Chemistry_WebBook
acetic acid, ion(1-)
ChemIDplus
ethanoate
ChEBI
0
Li
InChI=1S/Li
WHXSMMKQMYFTQS-UHFFFAOYSA-N
6.94100
7.01600
[Li]
CAS:7439-93-2
WebElements:Li
lithium
chebi_ontology
3Li
Li
Lithium
lithium
litio
CHEBI:30145
lithium atom
CAS:7439-93-2
NIST Chemistry WebBook
lithium
IUPAC
3Li
IUPAC
Li
IUPAC
Lithium
ChEBI
lithium
ChEBI
litio
ChEBI
Particle of zero charge, zero rest mass, spin quantum number 1, energy hnu and momentum hnu/c (h is the Planck constant, nu the frequency of radiation and c the speed of light), carrier of electromagnetic force.
0
0.0
0.0
*
CHEBI:10581
CHEBI:14383
KEGG:C00205
photon
chebi_ontology
Lichtquant
Light
foton
gamma
hnu
light quantum
CHEBI:30212
photon
photon
IUPAC
Lichtquant
ChEBI
Light
KEGG_COMPOUND
foton
ChEBI
gamma
IUPAC
hnu
IUPAC
hnu
UniProt
light quantum
ChEBI
Nucleus of the (4)He atom.
+2
[4He]
InChI=1S/He/q+2/i1+0
LBDSXVIYZYSRII-IGMARMGPSA-N
4.002
4.00151
[4He++]
Gmelin:53474
alpha-particle
helium-4(2+)
chebi_ontology
(4)He(2+)
alpha
CHEBI:30216
alpha-particle
Gmelin:53474
Gmelin
alpha-particle
IUPAC
alpha-particle
IUPAC
helium-4(2+)
IUPAC
(4)He(2+)
IUPAC
alpha
IUPAC
0
He
InChI=1S/He
SWQJXJOGLNCZEY-UHFFFAOYSA-N
4.00260
4.00260
[He]
CAS:7440-59-7
Drug_Central:4262
Gmelin:16294
WebElements:He
helium
chebi_ontology
2He
He
Helium
helio
helium
CHEBI:30217
helium atom
CAS:7440-59-7
NIST Chemistry WebBook
Drug_Central:4262
DrugCentral
Gmelin:16294
Gmelin
helium
IUPAC
2He
IUPAC
He
IUPAC
Helium
ChEBI
helio
ChEBI
helium
ChEBI
The stable isotope of helium with relative atomic mass 3.016029. The least abundant (0.000137 atom percent) isotope of naturally occurring helium.
0
[3He]
InChI=1S/He/i1-1
SWQJXJOGLNCZEY-BJUDXGSMSA-N
3.016
3.01603
[3He]
CAS:14762-55-1
Gmelin:14208
helium-3
chebi_ontology
(3)2He
(3)He
(3He)helium
helium, isotope of mass 3
helium-3
CHEBI:30218
helium-3 atom
CAS:14762-55-1
ChemIDplus
Gmelin:14208
Gmelin
helium-3
IUPAC
(3)2He
IUPAC
(3)He
IUPAC
(3He)helium
ChemIDplus
helium, isotope of mass 3
ChemIDplus
helium-3
ChEBI
The stable isotope of helium with relative atomic mass 4.002603. The most abundant (99.99 atom percent) isotope of naturally occurring helium.
0
[4He]
InChI=1S/He/i1+0
SWQJXJOGLNCZEY-IGMARMGPSA-N
4.003
4.00260
[4He]
Gmelin:14207
helium-4
chebi_ontology
(4)2He
(4)He
helium-4
CHEBI:30219
helium-4 atom
Gmelin:14207
Gmelin
helium-4
IUPAC
(4)2He
IUPAC
(4)He
IUPAC
helium-4
ChEBI
Nuclear particle of zero charge, spin 1/2 and rest mass of 1.008664904(14) u.
0
1.008664904
neutron
chebi_ontology
(1)0n
n
CHEBI:30222
neutron
neutron
ChEBI
neutron
IUPAC
(1)0n
ChEBI
n
IUPAC
+2
0.00000
[*++]
CHEBI:23856
CHEBI:4665
KEGG:C00572
chebi_ontology
Divalent cation
divalent inorganic cations
monoatomic dications
CHEBI:30412
monoatomic dication
Divalent cation
KEGG_COMPOUND
divalent inorganic cations
ChEBI
monoatomic dications
ChEBI
0
At
InChI=1S/At
RYXHOMYVWAEKHL-UHFFFAOYSA-N
210.00000
210.00000
[At]
CAS:7440-68-8
Gmelin:40440
WebElements:At
astatine
chebi_ontology
85At
Astat
At
astate
astatine
astato
CHEBI:30415
astatine atom
CAS:7440-68-8
ChemIDplus
CAS:7440-68-8
NIST Chemistry WebBook
Gmelin:40440
Gmelin
astatine
IUPAC
85At
IUPAC
Astat
ChEBI
At
IUPAC
astate
ChEBI
astatine
ChEBI
astato
ChEBI
A metallic element first identified and named from the brilliant indigo (Latin indicum) blue line in its flame spectrum.
0
In
InChI=1S/In
APFVFJFRJDLVQX-UHFFFAOYSA-N
114.81800
114.90388
[In]
CAS:7440-74-6
Gmelin:16297
WebElements:In
indium
chebi_ontology
49In
In
Indium
indio
indium
CHEBI:30430
indium atom
CAS:7440-74-6
ChemIDplus
CAS:7440-74-6
NIST Chemistry WebBook
Gmelin:16297
Gmelin
indium
IUPAC
49In
IUPAC
In
IUPAC
Indium
ChEBI
indio
ChEBI
indium
ChEBI
A metallic element first identified and named from the brilliant green line in its flame spectrum (from Greek thetaalphalambdalambdaomicronsigma, a green shoot).
0
Tl
InChI=1S/Tl
BKVIYDNLLOSFOA-UHFFFAOYSA-N
204.38330
204.97443
[Tl]
CAS:7440-28-0
Gmelin:16308
WebElements:Tl
thallium
chebi_ontology
81Tl
Tl
talio
CHEBI:30440
thallium
CAS:7440-28-0
ChemIDplus
CAS:7440-28-0
NIST Chemistry WebBook
Gmelin:16308
Gmelin
thallium
IUPAC
81Tl
IUPAC
Tl
IUPAC
talio
ChEBI
0
Ge
InChI=1S/Ge
GNPVGFCGXDBREM-UHFFFAOYSA-N
72.61000
73.92118
[Ge]
CAS:7440-56-4
WebElements:Ge
germanium
chebi_ontology
32Ge
Ge
germanio
germanium
CHEBI:30441
germanium atom
CAS:7440-56-4
ChemIDplus
CAS:7440-56-4
NIST Chemistry WebBook
germanium
IUPAC
32Ge
IUPAC
Ge
IUPAC
germanio
ChEBI
germanium
ChEBI
0
Te
InChI=1S/Te
PORWMNRCUJJQNO-UHFFFAOYSA-N
127.60000
129.90622
[Te]
CAS:13494-80-9
Gmelin:16309
WebElements:Te
tellurium
chebi_ontology
52Te
Te
Tellur
tellure
tellurium
teluro
CHEBI:30452
tellurium atom
CAS:13494-80-9
ChemIDplus
CAS:13494-80-9
NIST Chemistry WebBook
Gmelin:16309
Gmelin
tellurium
IUPAC
52Te
IUPAC
Te
IUPAC
Tellur
ChEBI
tellure
ChEBI
tellurium
ChEBI
teluro
ChEBI
Alkaline earth metal atom with atomic number 4.
0
Be
InChI=1S/Be
ATBAMAFKBVZNFJ-UHFFFAOYSA-N
9.01218
9.01218
[Be]
CAS:7440-41-7
Gmelin:16265
PMID:10858219
PMID:11897645
PMID:14643414
PMID:16951350
PMID:18250483
PMID:18768897
PMID:24912188
Reaxys:14617151
WebElements:Be
beryllium
chebi_ontology
4Be
Be
Beryllium
berilio
beryllium
CHEBI:30501
beryllium atom
CAS:7440-41-7
ChemIDplus
CAS:7440-41-7
NIST Chemistry WebBook
Gmelin:16265
Gmelin
PMID:10858219
Europe PMC
PMID:11897645
Europe PMC
PMID:14643414
Europe PMC
PMID:16951350
Europe PMC
PMID:18250483
Europe PMC
PMID:18768897
Europe PMC
PMID:24912188
Europe PMC
Reaxys:14617151
Reaxys
beryllium
IUPAC
4Be
IUPAC
Be
IUPAC
Beryllium
ChEBI
berilio
ChEBI
beryllium
ChEBI
0
Ag
InChI=1S/Ag
BQCADISMDOOEFD-UHFFFAOYSA-N
107.86820
106.90509
[Ag]
CAS:7440-22-4
WebElements:Ag
silver
chebi_ontology
47Ag
Ag
Silber
argent
argentum
plata
silver
CHEBI:30512
silver atom
CAS:7440-22-4
ChemIDplus
silver
IUPAC
47Ag
IUPAC
Ag
IUPAC
Silber
ChemIDplus
argent
ChEBI
argentum
IUPAC
plata
ChEBI
silver
ChEBI
0
Sb
InChI=1S/Sb
WATWJIUSRGPENY-UHFFFAOYSA-N
121.76000
120.90381
[Sb]
WebElements:Sb
antimony
chebi_ontology
51Sb
Antimon
Sb
antimoine
antimonio
antimony
stibium
CHEBI:30513
antimony atom
antimony
IUPAC
51Sb
IUPAC
Antimon
ChEBI
Sb
IUPAC
antimoine
ChEBI
antimonio
ChEBI
antimony
ChEBI
stibium
IUPAC
0
Cs
InChI=1S/Cs
TVFDJXOCXUVLDH-UHFFFAOYSA-N
132.90545
132.90545
[Cs]
WebElements:Cs
caesium
chebi_ontology
55Cs
Caesium
Cs
Zaesium
caesium
cesio
cesium
CHEBI:30514
caesium atom
caesium
IUPAC
55Cs
IUPAC
Caesium
ChEBI
Cs
IUPAC
Zaesium
ChEBI
caesium
ChEBI
cesio
ChEBI
cesium
ChEBI
cesium
IUPAC
0
Ru
InChI=1S/Ru
KJTLSVCANCCWHF-UHFFFAOYSA-N
101.07000
101.90434
[Ru]
CAS:7440-18-8
WebElements:Ru
ruthenium
chebi_ontology
44Ru
Ru
Ruthenium
rutenio
ruthenium
CHEBI:30682
ruthenium atom
CAS:7440-18-8
ChemIDplus
CAS:7440-18-8
NIST Chemistry WebBook
ruthenium
IUPAC
44Ru
IUPAC
Ru
IUPAC
Ruthenium
ChEBI
rutenio
ChEBI
ruthenium
ChEBI
0
Os
InChI=1S/Os
SYQBFIAQOQZEGI-UHFFFAOYSA-N
190.23000
191.96148
[Os]
CAS:7440-04-2
Gmelin:16234
WebElements:Os
osmium
chebi_ontology
76Os
Os
osmio
osmium
CHEBI:30687
osmium atom
CAS:7440-04-2
ChemIDplus
CAS:7440-04-2
NIST Chemistry WebBook
Gmelin:16234
Gmelin
osmium
IUPAC
76Os
IUPAC
Os
IUPAC
osmio
ChEBI
osmium
ChEBI
Any member of a group of hydroxy-5beta-cholanic acids occuring in bile, where they are present as the sodium salts of their amides with glycine or taurine. In mammals bile acids almost invariably have 5beta-configuration.
KEGG:C01558
Bile acid
chebi_ontology
5beta-bile acid
5beta-bile acids
Bile salt
Gallensaeure
Gallensaeuren
bile acids
CHEBI:3098
bile acid
Bile acid
KEGG_COMPOUND
5beta-bile acid
ChEBI
5beta-bile acids
ChEBI
Bile salt
KEGG_COMPOUND
Gallensaeure
ChEBI
Gallensaeuren
ChEBI
bile acids
ChEBI
0
Ba
InChI=1S/Ba
DSAJWYNOEDNPEQ-UHFFFAOYSA-N
137.32700
137.90525
[Ba]
WebElements:Ba
barium
chebi_ontology
56Ba
Ba
Barium
bario
barium
baryum
CHEBI:32594
barium atom
barium
IUPAC
56Ba
IUPAC
Ba
IUPAC
Barium
ChEBI
bario
ChEBI
barium
ChEBI
baryum
ChEBI
A compound formally derived from ammonia by replacing one, two or three hydrogen atoms by hydrocarbyl groups.
CHEBI:13814
CHEBI:22474
CHEBI:2641
KEGG:C00706
Amine
amines
chebi_ontology
Amin
Substituted amine
CHEBI:32952
amine
Amine
KEGG_COMPOUND
amines
IUPAC
Amin
ChEBI
Substituted amine
KEGG_COMPOUND
An amide is a derivative of an oxoacid RkE(=O)l(OH)m (l =/= 0) in which an acidic hydroxy group has been replaced by an amino or substituted amino group.
CHEBI:22473
CHEBI:2633
KEGG:C00241
Amide
amides
chebi_ontology
CHEBI:32988
amide
Amide
KEGG_COMPOUND
amides
IUPAC
0
Eu
InChI=1S/Eu
OGPBJKLSAFTDLK-UHFFFAOYSA-N
151.96400
152.92124
[Eu]
CAS:7440-53-1
Gmelin:16279
WebElements:Eu
europium
chebi_ontology
63Eu
Eu
europio
europium
CHEBI:32999
europium atom
CAS:7440-53-1
ChemIDplus
Gmelin:16279
Gmelin
europium
IUPAC
63Eu
IUPAC
Eu
IUPAC
europio
ChEBI
europium
ChEBI
Intended use of the molecular entity or part thereof by humans.
chebi_ontology
CHEBI:33232
application
A particle not known to have substructure.
elementary particle
chebi_ontology
elementary particles
CHEBI:33233
fundamental particle
elementary particle
IUPAC
elementary particles
ChEBI
A monoatomic entity is a molecular entity consisting of a single atom.
chebi_ontology
atomic entity
monoatomic entities
CHEBI:33238
monoatomic entity
atomic entity
ChEBI
monoatomic entities
ChEBI
chebi_ontology
oxoacid derivatives
CHEBI:33241
oxoacid derivative
oxoacid derivatives
ChEBI
chebi_ontology
inorganic hydrides
CHEBI:33242
inorganic hydride
inorganic hydrides
ChEBI
An organic fundamental parent is a structure used as a basis for substitutive names in organic nomenclature, containing, in addition to one or more hydrogen atoms, a single atom of an element, a number of atoms (alike or different) linked together to form an unbranched chain, a monocyclic or polycyclic ring system, or a ring assembly or ring/chain system.
chebi_ontology
organic fundamental parents
organic parent hydrides
CHEBI:33245
organic fundamental parent
organic fundamental parents
ChEBI
organic parent hydrides
ChEBI
Any substituent group which does not contain carbon.
chebi_ontology
inorganic groups
CHEBI:33246
inorganic group
inorganic groups
ChEBI
Any substituent group or skeleton containing carbon.
chebi_ontology
organic groups
CHEBI:33247
organic group
organic groups
ChEBI
Any organic substituent group, regardless of functional type, having one free valence at a carbon atom.
organyl group
organyl groups
chebi_ontology
groupe organyle
grupo organilo
grupos organilo
CHEBI:33249
organyl group
organyl group
IUPAC
organyl groups
IUPAC
groupe organyle
IUPAC
grupo organilo
IUPAC
grupos organilo
IUPAC
atom
A chemical entity constituting the smallest component of an element having the chemical properties of the element.
CHEBI:22671
CHEBI:23907
MeSH:D004602
NCIt:C1940
NCIt:C48792
SNOMEDCT:290004009
atom
chebi_ontology
atome
atomo
atoms
atomus
element
elements
CHEBI:33250
atom
atom
IUPAC
atome
IUPAC
atomo
IUPAC
atoms
ChEBI
atomus
ChEBI
element
ChEBI
elements
ChEBI
0
H
InChI=1S/H
YZCKVEUIGOORGS-UHFFFAOYSA-N
1.00794
1.00783
[H]
chebi_ontology
atomic hydrogen
CHEBI:33251
monoatomic hydrogen
atomic hydrogen
ChEBI
A nucleus is the positively charged central portion of an atom, excluding the orbital electrons.
Some people may be uncomfortable calling every proton an atomic nucleus
This is equivalent to CHEBI:33252
nucleus
chebi_ontology
Atomkern
Kern
noyau
noyau atomique
nuclei
nucleo
nucleo atomico
nucleus atomi
CHEBI:33252
atomic nucleus
nucleus
IUPAC
Atomkern
ChEBI
Kern
ChEBI
noyau
IUPAC
noyau atomique
ChEBI
nuclei
ChEBI
nucleo
IUPAC
nucleo atomico
ChEBI
nucleus atomi
ChEBI
Heavy nuclear particle: proton or neutron.
nucleon
chebi_ontology
Nukleon
Nukleonen
nucleons
CHEBI:33253
nucleon
nucleon
IUPAC
nucleon
IUPAC
Nukleon
ChEBI
Nukleonen
ChEBI
nucleons
ChEBI
A derivative of an oxoacid RkE(=O)l(OH)m (l =/= 0) in which an acidic hydroxy group has been replaced by an amino or substituted amino group.
primary amide
primary amides
chebi_ontology
CHEBI:33256
primary amide
primary amide
IUPAC
primary amides
IUPAC
A molecular entity all atoms of which have the same atomic number.
chebi_ontology
homoatomic entity
homoatomic molecular entities
homoatomic molecular entity
CHEBI:33259
elemental molecular entity
homoatomic entity
ChEBI
homoatomic molecular entities
ChEBI
homoatomic molecular entity
ChEBI
chebi_ontology
CHEBI:33260
elemental hydrogen
chebi_ontology
CHEBI:33262
elemental oxygen
chebi_ontology
CHEBI:33263
diatomic oxygen
diatomic nitrogen
elemental nitrogen
An anion consisting of more than one atom.
chebi_ontology
polyatomic anions
CHEBI:33273
polyatomic anion
polyatomic anions
ChEBI
chebi_ontology
chemical messenger
CHEBI:33280
molecular messenger
chemical messenger
ChEBI
A substance that kills or slows the growth of microorganisms, including bacteria, viruses, fungi and protozoans.
CHEBI:22582
PMID:12964249
PMID:22117953
PMID:22439833
PMID:22849268
PMID:22849276
PMID:22958833
chebi_ontology
Antibiotika
Antibiotikum
antibiotic
antibiotics
antibiotique
antimicrobial
antimicrobial agents
antimicrobials
microbicide
microbicides
CHEBI:33281
antimicrobial agent
PMID:12964249
Europe PMC
PMID:22117953
Europe PMC
PMID:22439833
Europe PMC
PMID:22849268
Europe PMC
PMID:22849276
Europe PMC
PMID:22958833
Europe PMC
Antibiotika
ChEBI
Antibiotikum
ChEBI
antibiotic
ChEBI
antibiotics
ChEBI
antibiotique
IUPAC
antimicrobial
ChEBI
antimicrobial agents
ChEBI
antimicrobials
ChEBI
microbicide
ChEBI
microbicides
ChEBI
A nutrient is a food component that an organism uses to survive and grow.
chebi_ontology
nutrients
CHEBI:33284
nutrient
nutrients
ChEBI
A heteroorganic entity is an organic molecular entity in which carbon atoms or organic groups are bonded directly to one or more heteroatoms.
chebi_ontology
heteroorganic entities
organoelement compounds
CHEBI:33285
heteroorganic entity
heteroorganic entities
ChEBI
organoelement compounds
ChEBI
fuel
A molecular entity containing one or more atoms of an alkali metal.
chebi_ontology
alkali metal molecular entities
CHEBI:33296
alkali metal molecular entity
alkali metal molecular entities
ChEBI
Any p-block element atom that is in group 15 of the periodic table: nitrogen, phosphorus, arsenic, antimony and bismuth.
pnictogens
chebi_ontology
group 15 elements
group V elements
nitrogenoideos
nitrogenoides
pnictogene
pnictogenes
CHEBI:33300
pnictogen
pnictogens
IUPAC
group 15 elements
ChEBI
group V elements
ChEBI
nitrogenoideos
ChEBI
nitrogenoides
ChEBI
pnictogene
ChEBI
pnictogenes
ChEBI
0
Bi
InChI=1S/Bi
JCXGWMGPZLAOME-UHFFFAOYSA-N
208.98038
208.98040
[Bi]
CAS:7440-69-9
WebElements:Bi
bismuth
chebi_ontology
83Bi
Bi
Bismut
Wismut
bismuth
bismuto
CHEBI:33301
bismuth atom
CAS:7440-69-9
ChemIDplus
bismuth
IUPAC
83Bi
IUPAC
Bi
IUPAC
Bismut
ChEBI
Wismut
ChEBI
bismuth
ChEBI
bismuto
ChEBI
A p-block molecular entity containing any pnictogen.
pnictogen molecular entity
chebi_ontology
pnictogen molecular entities
CHEBI:33302
pnictogen molecular entity
pnictogen molecular entity
ChEBI
pnictogen molecular entities
ChEBI
Any p-block element belonging to the group 16 family of the periodic table.
PMID:17084588
chalcogen
chalcogens
chebi_ontology
Chalkogen
Chalkogene
anfigeno
anfigenos
calcogeno
calcogenos
chalcogene
chalcogenes
group 16 elements
group VI elements
CHEBI:33303
chalcogen
PMID:17084588
Europe PMC
chalcogen
IUPAC
chalcogens
IUPAC
Chalkogen
ChEBI
Chalkogene
ChEBI
anfigeno
ChEBI
anfigenos
ChEBI
calcogeno
ChEBI
calcogenos
ChEBI
chalcogene
ChEBI
chalcogenes
ChEBI
group 16 elements
ChEBI
group VI elements
ChEBI
Any p-block molecular entity containing a chalcogen.
chalcogen molecular entity
chebi_ontology
chalcogen compounds
chalcogen molecular entities
CHEBI:33304
chalcogen molecular entity
chalcogen molecular entity
ChEBI
chalcogen compounds
ChEBI
chalcogen molecular entities
ChEBI
group 14 elements
chebi_ontology
carbon group element
carbon group elements
carbonoides
cristallogene
cristallogenes
group IV elements
CHEBI:33306
carbon group element atom
group 14 elements
IUPAC
carbon group element
ChEBI
carbon group elements
ChEBI
carbonoides
ChEBI
cristallogene
ChEBI
cristallogenes
ChEBI
group IV elements
ChEBI
An ester of a carboxylic acid, R(1)C(=O)OR(2), where R(1) = H or organyl and R(2) = organyl.
CHEBI:13204
CHEBI:23028
CHEBI:3408
KEGG:C02391
Wikipedia:Ester
Carboxylic ester
carboxylic esters
chebi_ontology
a carboxylic ester
carboxylic acid esters
CHEBI:33308
carboxylic ester
Carboxylic ester
KEGG_COMPOUND
carboxylic esters
IUPAC
a carboxylic ester
UniProt
carboxylic acid esters
ChEBI
noble gas
noble gases
chebi_ontology
Edelgas
Edelgase
gas noble
gases nobles
gaz noble
gaz nobles
group 18 elements
group VIII elements
inert gases
noble gas
rare gases
CHEBI:33309
noble gas atom
noble gas
IUPAC
noble gases
IUPAC
Edelgas
ChEBI
Edelgase
ChEBI
gas noble
ChEBI
gases nobles
ChEBI
gaz noble
ChEBI
gaz nobles
ChEBI
group 18 elements
IUPAC
group VIII elements
ChEBI
inert gases
ChEBI
noble gas
ChEBI
rare gases
ChEBI
0
Ne
InChI=1S/Ne
GKAOGPIIYCISHV-UHFFFAOYSA-N
20.17970
19.99244
[Ne]
CAS:7440-01-9
WebElements:Ne
neon
chebi_ontology
10Ne
Ne
Neon
neon
CHEBI:33310
neon atom
CAS:7440-01-9
ChemIDplus
neon
IUPAC
10Ne
IUPAC
Ne
ChEBI
Neon
ChEBI
neon
ChEBI
A radioactive metallic element discovered in 1898 by Marie Sklodowska Curie and named after her home country, Poland (Latin Polonia).
0
Po
InChI=1S/Po
HZEBHPIOVYHPMT-UHFFFAOYSA-N
209.00000
209.00000
[Po]
CAS:7440-08-6
Gmelin:40435
WebElements:Po
polonium
chebi_ontology
84Po
Po
polonio
polonium
CHEBI:33313
polonium atom
CAS:7440-08-6
ChemIDplus
CAS:7440-08-6
NIST Chemistry WebBook
Gmelin:40435
Gmelin
polonium
IUPAC
84Po
IUPAC
Po
IUPAC
polonio
ChEBI
polonium
ChEBI
0
Rn
InChI=1S/Rn
SYUHGPGVQRZVTB-UHFFFAOYSA-N
222.00000
222.00000
[Rn]
CAS:10043-92-2
Gmelin:16242
WebElements:Rn
radon
chebi_ontology
86Rn
Rn
niton
radium emanation
radon
CHEBI:33314
radon atom
CAS:10043-92-2
ChemIDplus
CAS:10043-92-2
NIST Chemistry WebBook
Gmelin:16242
Gmelin
radon
IUPAC
86Rn
IUPAC
Rn
IUPAC
niton
ChemIDplus
radium emanation
ChemIDplus
radon
ChEBI
0
He
4.003
4.00260
chebi_ontology
elemental helium
CHEBI:33315
monoatomic helium
elemental helium
ChEBI
+2
He
InChI=1S/He/q+2
LBDSXVIYZYSRII-UHFFFAOYSA-N
4.00260
4.00151
[He++]
helium(2+)
chebi_ontology
He(2+)
CHEBI:33316
helium(2+)
helium(2+)
IUPAC
He(2+)
IUPAC
group 13 elements
chebi_ontology
Element der Borgruppe
boron group element
boron group elements
group III elements
CHEBI:33317
boron group element atom
group 13 elements
IUPAC
Element der Borgruppe
ChEBI
boron group element
ChEBI
boron group elements
ChEBI
group III elements
ChEBI
An atom belonging to one of the main groups (found in the s- and p- blocks) of the periodic table.
main group elements
chebi_ontology
Hauptgruppenelement
Hauptgruppenelemente
main group element
CHEBI:33318
main group element atom
main group elements
IUPAC
Hauptgruppenelement
ChEBI
Hauptgruppenelemente
ChEBI
main group element
ChEBI
lanthanoids
chebi_ontology
Lanthanoid
Lanthanoide
Lanthanoidengruppe
Lanthanoidenreiche
Ln
lanthanide
lanthanides
lanthanoid
CHEBI:33319
lanthanoid atom
lanthanoids
IUPAC
Lanthanoid
ChEBI
Lanthanoide
ChEBI
Lanthanoidengruppe
ChEBI
Lanthanoidenreiche
ChEBI
Ln
ChEBI
lanthanide
ChEBI
lanthanides
ChEBI
lanthanoid
ChEBI
actinoids
chebi_ontology
Actinoid
Actinoide
Actinoidenelemente
Actinoidengruppe
Aktinoide
Aktinoidenelemente
An
actinide
actinides
actinoid
CHEBI:33320
actinoid atom
actinoids
IUPAC
Actinoid
ChEBI
Actinoide
ChEBI
Actinoidenelemente
ChEBI
Actinoidengruppe
ChEBI
Aktinoide
ChEBI
Aktinoidenelemente
ChEBI
An
ChEBI
actinide
ChEBI
actinides
ChEBI
actinoid
ChEBI
rare earth metals
chebi_ontology
rare earth metal
CHEBI:33321
rare earth metal atom
rare earth metals
IUPAC
rare earth metal
ChEBI
0
Rb
InChI=1S/Rb
IGLNJRXAVVLDKE-UHFFFAOYSA-N
85.46780
84.91179
[Rb]
CAS:7440-17-7
DrugBank:DB06749
Gmelin:16244
WebElements:Rb
rubidium
chebi_ontology
37Rb
Rb
rubidio
rubidium
CHEBI:33322
rubidium atom
CAS:7440-17-7
ChemIDplus
CAS:7440-17-7
NIST Chemistry WebBook
Gmelin:16244
Gmelin
rubidium
IUPAC
37Rb
IUPAC
Rb
IUPAC
rubidio
ChEBI
rubidium
ChEBI
0
Fr
InChI=1S/Fr
KLMCZVJOEAUDNE-UHFFFAOYSA-N
223.00000
223.00000
[Fr]
CAS:7440-73-5
Gmelin:40458
WebElements:Fr
francium
chebi_ontology
87Fr
Fr
Franzium
francio
francium
CHEBI:33323
francium atom
CAS:7440-73-5
ChemIDplus
CAS:7440-73-5
NIST Chemistry WebBook
Gmelin:40458
Gmelin
francium
IUPAC
87Fr
IUPAC
Fr
IUPAC
Franzium
ChEBI
francio
ChEBI
francium
ChEBI
0
Sr
InChI=1S/Sr
CIOAGBVUUVVLOB-UHFFFAOYSA-N
87.62000
87.90561
[Sr]
CAS:7440-24-6
WebElements:Sr
strontium
chebi_ontology
38Sr
Sr
estroncio
strontium
CHEBI:33324
strontium atom
CAS:7440-24-6
ChemIDplus
CAS:7440-24-6
NIST Chemistry WebBook
strontium
IUPAC
38Sr
IUPAC
Sr
IUPAC
estroncio
ChEBI
strontium
ChEBI
0
Ra
InChI=1S/Ra
HCWPIIXVSYCSAN-UHFFFAOYSA-N
226.00000
226.00000
[Ra]
CAS:7440-14-4
WebElements:Ra
radium
chebi_ontology
88Ra
Ra
radio
radium
CHEBI:33325
radium atom
CAS:7440-14-4
ChemIDplus
CAS:7440-14-4
NIST Chemistry WebBook
radium
IUPAC
88Ra
IUPAC
Ra
IUPAC
radio
ChEBI
radium
ChEBI
0
Sc
InChI=1S/Sc
SIXSYDAISGFNSX-UHFFFAOYSA-N
44.95591
44.95591
[Sc]
CAS:7440-20-2
WebElements:Sc
scandium
chebi_ontology
21Sc
Sc
Skandium
escandio
scandium
CHEBI:33330
scandium atom
CAS:7440-20-2
ChemIDplus
CAS:7440-20-2
NIST Chemistry WebBook
scandium
IUPAC
21Sc
IUPAC
Sc
IUPAC
Skandium
ChEBI
escandio
ChEBI
scandium
ChEBI
0
Y
InChI=1S/Y
VWQVUPCCIRVNHF-UHFFFAOYSA-N
88.90585
88.90584
[Y]
CAS:7440-65-5
Gmelin:16319
WebElements:Y
yttrium
chebi_ontology
39Y
Y
ytrio
yttrium
CHEBI:33331
yttrium atom
CAS:7440-65-5
ChemIDplus
CAS:7440-65-5
NIST Chemistry WebBook
Gmelin:16319
Gmelin
yttrium
IUPAC
39Y
IUPAC
Y
ChEBI
ytrio
ChEBI
yttrium
ChEBI
group 3 elements
chebi_ontology
scandium group element
scandium group elements
CHEBI:33335
scandium group element atom
group 3 elements
IUPAC
scandium group element
ChEBI
scandium group elements
ChEBI
0
La
InChI=1S/La
FZLIPJUXYLNCLC-UHFFFAOYSA-N
138.90550
138.90636
[La]
CAS:7439-91-0
Gmelin:16203
WebElements:La
lanthanum
chebi_ontology
57La
La
Lanthan
lantano
lanthane
lanthanum
CHEBI:33336
lanthanum atom
CAS:7439-91-0
ChemIDplus
CAS:7439-91-0
NIST Chemistry WebBook
Gmelin:16203
Gmelin
lanthanum
IUPAC
57La
IUPAC
La
ChEBI
Lanthan
ChEBI
lantano
ChEBI
lanthane
ChEBI
lanthanum
ChEBI
0
Ac
InChI=1S/Ac
QQINRWTZWGJFDB-UHFFFAOYSA-N
227.00000
227.00000
[Ac]
CAS:7440-34-8
WebElements:Ac
actinium
chebi_ontology
89Ac
Ac
Aktinium
actinio
actinium
CHEBI:33337
actinium atom
CAS:7440-34-8
ChemIDplus
CAS:7440-34-8
NIST Chemistry WebBook
actinium
IUPAC
89Ac
IUPAC
Ac
IUPAC
Aktinium
ChEBI
actinio
ChEBI
actinium
ChEBI
group 12 elements
chebi_ontology
zinc group element
zinc group elements
CHEBI:33340
zinc group element atom
group 12 elements
IUPAC
zinc group element
ChEBI
zinc group elements
ChEBI
0
Ti
InChI=1S/Ti
RTAQQCXQSZGOHL-UHFFFAOYSA-N
47.86700
47.94794
[Ti]
CAS:7440-32-6
WebElements:Ti
titanium
chebi_ontology
22Ti
Ti
Titan
titane
titanio
titanium
CHEBI:33341
titanium atom
CAS:7440-32-6
ChemIDplus
CAS:7440-32-6
NIST Chemistry WebBook
titanium
IUPAC
22Ti
IUPAC
Ti
IUPAC
Titan
ChEBI
titane
ChEBI
titanio
ChEBI
titanium
ChEBI
0
Zr
InChI=1S/Zr
QCWXUUIWCKQGHC-UHFFFAOYSA-N
91.22400
89.90470
[Zr]
CAS:7440-67-7
WebElements:Zr
zirconium
chebi_ontology
40Zr
Zirkonium
Zr
circonio
zirconio
zirconium
CHEBI:33342
zirconium atom
CAS:7440-67-7
ChemIDplus
CAS:7440-67-7
NIST Chemistry WebBook
zirconium
IUPAC
40Zr
IUPAC
Zirkonium
ChEBI
Zr
IUPAC
circonio
ChEBI
zirconio
ChEBI
zirconium
ChEBI
0
Hf
InChI=1S/Hf
VBJZVLUMGGDVMO-UHFFFAOYSA-N
178.49000
179.94656
[Hf]
CAS:7440-58-6
WebElements:Hf
hafnium
chebi_ontology
72Hf
Hf
hafnio
hafnium
CHEBI:33343
hafnium atom
CAS:7440-58-6
ChemIDplus
CAS:7440-58-6
NIST Chemistry WebBook
hafnium
IUPAC
72Hf
IUPAC
Hf
IUPAC
hafnio
ChEBI
hafnium
ChEBI
0
Nb
InChI=1S/Nb
GUCVJGMIXFAOAE-UHFFFAOYSA-N
92.90638
92.90637
[Nb]
CAS:7440-03-1
WebElements:Nb
niobium
chebi_ontology
41Nb
Nb
Niob
columbio
columbium
niobio
niobium
CHEBI:33344
niobium atom
CAS:7440-03-1
ChemIDplus
CAS:7440-03-1
NIST Chemistry WebBook
niobium
IUPAC
41Nb
IUPAC
Nb
IUPAC
Niob
ChEBI
columbio
ChEBI
columbium
NIST_Chemistry_WebBook
niobio
ChEBI
niobium
ChEBI
group 4 elements
chebi_ontology
titanium group element
titanium group elements
CHEBI:33345
titanium group element atom
group 4 elements
IUPAC
titanium group element
ChEBI
titanium group elements
ChEBI
0
Rf
InChI=1S/Rf
YGPLJIIQQIDVFJ-UHFFFAOYSA-N
261.00000
267.00000
[Rf]
WebElements:Rf
rutherfordium
chebi_ontology
104Rf
Ku
Rf
Unq
kurchatovium
rutherfordio
rutherfordium
unnilquadium
CHEBI:33346
rutherfordium atom
rutherfordium
IUPAC
104Rf
IUPAC
Ku
ChEBI
Rf
IUPAC
Unq
IUPAC
kurchatovium
ChEBI
rutherfordio
ChEBI
rutherfordium
ChEBI
unnilquadium
IUPAC
group 5 elements
chebi_ontology
vanadium group element
vanadium group elements
CHEBI:33347
vanadium group element atom
group 5 elements
IUPAC
vanadium group element
ChEBI
vanadium group elements
ChEBI
0
Ta
InChI=1S/Ta
GUVRBAGPIYLISA-UHFFFAOYSA-N
180.94790
180.94800
[Ta]
CAS:7440-25-7
WebElements:Ta
tantalum
chebi_ontology
73Ta
Ta
Tantal
tantale
tantalo
tantalum
CHEBI:33348
tantalum atom
CAS:7440-25-7
ChemIDplus
CAS:7440-25-7
NIST Chemistry WebBook
tantalum
IUPAC
73Ta
IUPAC
Ta
IUPAC
Tantal
ChEBI
tantale
ChEBI
tantalo
ChEBI
tantalum
ChEBI
0
Db
262.00000
270.00000
[Db]
WebElements:Db
dubnium
chebi_ontology
105Db
Db
Ha
Ns
Unp
dubnio
dubnium
hahnium
nielsbohrium
unnilpentium
CHEBI:33349
dubnium atom
dubnium
IUPAC
105Db
IUPAC
Db
IUPAC
Ha
ChEBI
Ns
ChEBI
Unp
IUPAC
dubnio
ChEBI
dubnium
ChEBI
hahnium
ChEBI
nielsbohrium
ChEBI
unnilpentium
IUPAC
group 6 elements
chebi_ontology
chromium group element
chromium group elements
CHEBI:33350
chromium group element atom
group 6 elements
IUPAC
chromium group element
ChEBI
chromium group elements
ChEBI
0
Sg
263.00000
271.00000
[Sg]
WebElements:Sg
seaborgium
chebi_ontology
106Sg
Sg
Unh
seaborgio
seaborgium
unnilhexium
CHEBI:33351
seaborgium atom
seaborgium
IUPAC
106Sg
IUPAC
Sg
IUPAC
Unh
ChEBI
seaborgio
ChEBI
seaborgium
ChEBI
unnilhexium
IUPAC
group 7 elements
chebi_ontology
manganese group element
manganese group elements
CHEBI:33352
manganese group element atom
group 7 elements
IUPAC
manganese group element
ChEBI
manganese group elements
ChEBI
0
Tc
InChI=1S/Tc
GKLVYJBZJHMRIY-UHFFFAOYSA-N
98.00000
97.00000
[Tc]
CAS:7440-26-8
Gmelin:16310
WebElements:Tc
technetium
chebi_ontology
43Tc
Tc
Technetium
technetium
tecnecio
CHEBI:33353
technetium atom
CAS:7440-26-8
ChemIDplus
CAS:7440-26-8
NIST Chemistry WebBook
Gmelin:16310
Gmelin
technetium
IUPAC
43Tc
IUPAC
Tc
IUPAC
Technetium
ChEBI
technetium
ChEBI
tecnecio
ChEBI
0
Bh
264.00000
270.00000
[Bh]
WebElements:Bh
bohrium
chebi_ontology
107Bh
Bh
Ns
Uns
bohrio
bohrium
nielsbohrium
unnilseptium
CHEBI:33355
bohrium atom
bohrium
IUPAC
107Bh
IUPAC
Bh
IUPAC
Ns
ChEBI
Uns
IUPAC
bohrio
ChEBI
bohrium
ChEBI
nielsbohrium
ChEBI
unnilseptium
IUPAC
group 8 elements
chebi_ontology
iron group element
iron group elements
CHEBI:33356
iron group element atom
group 8 elements
IUPAC
iron group element
ChEBI
iron group elements
ChEBI
0
Hs
265.00000
277.00000
[Hs]
WebElements:Hs
hassium
chebi_ontology
108Hs
Ha
Hs
Uno
hahnium
hassio
hassium
unniloctium
CHEBI:33357
hassium atom
hassium
IUPAC
108Hs
IUPAC
Ha
ChEBI
Hs
IUPAC
Uno
IUPAC
hahnium
ChEBI
hassio
ChEBI
hassium
ChEBI
unniloctium
IUPAC
group 9 elements
chebi_ontology
cobalt group element
cobalt group elements
CHEBI:33358
cobalt group element atom
group 9 elements
IUPAC
cobalt group element
ChEBI
cobalt group elements
ChEBI
A cobalt group element atom of atomic number 45.
0
Rh
InChI=1S/Rh
MHOVAHRLVXNVSD-UHFFFAOYSA-N
102.90550
102.90550
[Rh]
CAS:7440-16-6
PMID:2936374
WebElements:Rh
Wikipedia:Rhodium
rhodium
chebi_ontology
45Rh
Rh
rhodium
rodio
CHEBI:33359
rhodium atom
CAS:7440-16-6
ChemIDplus
CAS:7440-16-6
NIST Chemistry WebBook
PMID:2936374
Europe PMC
rhodium
IUPAC
45Rh
IUPAC
Rh
ChEBI
rhodium
ChEBI
rodio
ChEBI
0
Mt
0.00000
0.00000
[Mt]
WebElements:Mt
meitnerium
chebi_ontology
109Mt
Mt
Une
meitnerio
meitnerium
unnilennium
CHEBI:33361
meitnerium atom
meitnerium
IUPAC
109Mt
IUPAC
Mt
IUPAC
Une
IUPAC
meitnerio
ChEBI
meitnerium
ChEBI
unnilennium
IUPAC
group 10 elements
chebi_ontology
nickel group element
nickel group elements
CHEBI:33362
nickel group element atom
group 10 elements
IUPAC
nickel group element
ChEBI
nickel group elements
ChEBI
Chemical element (nickel group element atom) with atomic number 46.
0
Pd
InChI=1S/Pd
KDLHZDBZIXYQEI-UHFFFAOYSA-N
106.42000
105.90348
[Pd]
CAS:7440-05-3
PMID:25097477
Reaxys:4937491
WebElements:Pd
Wikipedia:Palladium
palladium
chebi_ontology
46Pd
Pd
paladio
CHEBI:33363
palladium
CAS:7440-05-3
ChemIDplus
CAS:7440-05-3
NIST Chemistry WebBook
PMID:25097477
Europe PMC
Reaxys:4937491
Reaxys
palladium
IUPAC
46Pd
IUPAC
Pd
IUPAC
paladio
ChEBI
0
Pt
InChI=1S/Pt
BASFCYQUMIYNBI-UHFFFAOYSA-N
195.078
194.96479
[Pt]
CAS:7440-06-4
WebElements:Pt
platinum
chebi_ontology
78Pt
Platin
Pt
platine
platino
CHEBI:33364
platinum
CAS:7440-06-4
ChemIDplus
CAS:7440-06-4
NIST Chemistry WebBook
platinum
IUPAC
78Pt
IUPAC
Platin
ChEBI
Pt
IUPAC
platine
ChEBI
platino
ChEBI
chebi_ontology
PGM
Platinmetalle
Platinoide
platinoid
platinum group metal
platinum group metals
platinum metals
CHEBI:33365
platinum group metal atom
PGM
ChEBI
Platinmetalle
ChEBI
Platinoide
ChEBI
platinoid
ChEBI
platinum group metal
ChEBI
platinum group metals
ChEBI
platinum metals
ChEBI
group 11 elements
chebi_ontology
coinage metals
copper group element
copper group elements
CHEBI:33366
copper group element atom
group 11 elements
IUPAC
coinage metals
ChEBI
copper group element
ChEBI
copper group elements
ChEBI
0
Ds
InChI=1S/Ds
NCBMSFCPDGXTHD-UHFFFAOYSA-N
0.00000
0.00000
[Ds]
WebElements:Ds
darmstadtium
chebi_ontology
110Ds
Ds
Uun
darmstadtio
ununnilium
CHEBI:33367
darmstadtium
darmstadtium
IUPAC
110Ds
IUPAC
Ds
IUPAC
Uun
IUPAC
darmstadtio
ChEBI
ununnilium
IUPAC
A copper group element atom with atomic number 111. The the ninth member of the 6d series of transition metals, it is an extremely radioactive, synthetic element. Average mass is around 281.
0
Rg
InChI=1S/Rg
LJROPTGWFUZRDB-UHFFFAOYSA-N
0.000
0.00000
[Rg]
WebElements:Rg
Wikipedia:Roentgenium
roentgenium
chebi_ontology
111Rg
Rg
Roentgenium
Uuu
roentgenio
roentgenium
unununium
CHEBI:33368
roentgenium atom
roentgenium
IUPAC
111Rg
IUPAC
Rg
IUPAC
Roentgenium
ChEBI
Uuu
ChEBI
roentgenio
ChEBI
roentgenium
ChEBI
unununium
ChEBI
0
Ce
InChI=1S/Ce
GWXLDORMOJMVQZ-UHFFFAOYSA-N
140.11600
139.90544
[Ce]
CAS:7440-45-1
Gmelin:16275
WebElements:Ce
cerium
chebi_ontology
58Ce
Ce
Cer
Zer
cerio
CHEBI:33369
cerium
CAS:7440-45-1
ChemIDplus
CAS:7440-45-1
NIST Chemistry WebBook
Gmelin:16275
Gmelin
cerium
ChEBI
cerium
IUPAC
58Ce
IUPAC
Ce
IUPAC
Cer
ChEBI
Zer
ChEBI
cerio
ChEBI
0
[99Tc]
InChI=1S/Tc/i1+1
GKLVYJBZJHMRIY-OUBTZVSYSA-N
98.906
98.90625
[99Tc]
CAS:14133-76-7
Gmelin:41657
technetium-99
chebi_ontology
(99)43Tc
(99)Tc
technetium, isotope of mass 99
CHEBI:33371
technetium-99
CAS:14133-76-7
ChemIDplus
Gmelin:41657
Gmelin
technetium-99
IUPAC
(99)43Tc
IUPAC
(99)Tc
IUPAC
technetium, isotope of mass 99
ChemIDplus
0
Nd
InChI=1S/Nd
QEFYFXOXNSNQGX-UHFFFAOYSA-N
144.24000
141.90773
[Nd]
CAS:7440-00-8
Gmelin:16212
WebElements:Nd
neodymium
chebi_ontology
60Nd
Nd
Neodym
neodimio
neodyme
neodymium
CHEBI:33372
neodymium atom
CAS:7440-00-8
ChemIDplus
CAS:7440-00-8
NIST Chemistry WebBook
Gmelin:16212
Gmelin
neodymium
IUPAC
60Nd
IUPAC
Nd
IUPAC
Neodym
ChEBI
neodimio
ChEBI
neodyme
ChEBI
neodymium
ChEBI
0
Pm
InChI=1S/Pm
VQMWBBYLQSCNPO-UHFFFAOYSA-N
145.00000
145.00000
[Pm]
CAS:7440-12-2
Gmelin:16237
WebElements:Pm
promethium
chebi_ontology
61Pm
Pm
Promethium
promethium
prometio
CHEBI:33373
promethium atom
CAS:7440-12-2
ChemIDplus
CAS:7440-12-2
NIST Chemistry WebBook
Gmelin:16237
Gmelin
promethium
IUPAC
61Pm
IUPAC
Pm
IUPAC
Promethium
ChEBI
promethium
ChEBI
prometio
ChEBI
0
Sm
InChI=1S/Sm
KZUNJOHGWZRPMI-UHFFFAOYSA-N
150.36000
151.91974
[Sm]
CAS:7440-19-9
Gmelin:16301
WebElements:Sm
samarium
chebi_ontology
62Sm
Sm
samario
samarium
CHEBI:33374
samarium atom
CAS:7440-19-9
ChemIDplus
CAS:7440-19-9
NIST Chemistry WebBook
Gmelin:16301
Gmelin
samarium
IUPAC
62Sm
IUPAC
Sm
IUPAC
samario
ChEBI
samarium
ChEBI
0
Gd
InChI=1S/Gd
UIWYJDYFSGRHKR-UHFFFAOYSA-N
157.25000
157.92411
[Gd]
CAS:7440-54-2
Gmelin:16286
WebElements:Gd
gadolinium
chebi_ontology
64Gd
Gd
gadolinio
gadolinium
CHEBI:33375
gadolinium atom
CAS:7440-54-2
ChemIDplus
CAS:7440-54-2
NIST Chemistry WebBook
Gmelin:16286
Gmelin
gadolinium
IUPAC
64Gd
IUPAC
Gd
IUPAC
gadolinio
ChEBI
gadolinium
ChEBI
0
Tb
InChI=1S/Tb
GZCRRIHWUXGPOV-UHFFFAOYSA-N
158.92534
158.92535
[Tb]
CAS:7440-27-9
Gmelin:16311
WebElements:Tb
terbium
chebi_ontology
65Tb
Tb
terbio
terbium
CHEBI:33376
terbium atom
CAS:7440-27-9
ChemIDplus
CAS:7440-27-9
NIST Chemistry WebBook
Gmelin:16311
Gmelin
terbium
IUPAC
65Tb
IUPAC
Tb
IUPAC
terbio
ChEBI
terbium
ChEBI
0
Dy
InChI=1S/Dy
KBQHZAAAGSGFKK-UHFFFAOYSA-N
162.50000
163.92918
[Dy]
CAS:7429-91-6
Gmelin:16278
WebElements:Dy
dysprosium
chebi_ontology
66Dy
Dy
disprosio
dysprosium
CHEBI:33377
dysprosium atom
CAS:7429-91-6
ChemIDplus
CAS:7429-91-6
NIST Chemistry WebBook
Gmelin:16278
Gmelin
dysprosium
IUPAC
66Dy
IUPAC
Dy
IUPAC
disprosio
ChEBI
dysprosium
ChEBI
0
Er
InChI=1S/Er
UYAHIZSMUZPPFV-UHFFFAOYSA-N
167.26000
165.93030
[Er]
CAS:7440-52-0
Gmelin:16280
WebElements:Er
erbium
chebi_ontology
68Er
Er
erbio
CHEBI:33379
erbium
CAS:7440-52-0
ChemIDplus
CAS:7440-52-0
NIST Chemistry WebBook
Gmelin:16280
Gmelin
erbium
IUPAC
68Er
IUPAC
Er
IUPAC
erbio
ChEBI
0
Tm
InChI=1S/Tm
FRNOGLGSGLTDKL-UHFFFAOYSA-N
168.93421
168.93422
[Tm]
CAS:7440-30-4
Gmelin:16307
WebElements:Tm
thulium
chebi_ontology
69Tm
Tm
thulium
tulio
CHEBI:33380
thulium atom
CAS:7440-30-4
ChemIDplus
CAS:7440-30-4
NIST Chemistry WebBook
Gmelin:16307
Gmelin
thulium
IUPAC
69Tm
IUPAC
Tm
ChEBI
thulium
ChEBI
tulio
ChEBI
0
Yb
InChI=1S/Yb
NAWDYIZEMPQZHO-UHFFFAOYSA-N
173.04000
173.93887
[Yb]
CAS:7440-64-4
Gmelin:16320
WebElements:Yb
ytterbium
chebi_ontology
70Yb
Yb
yterbio
CHEBI:33381
ytterbium
CAS:7440-64-4
ChemIDplus
CAS:7440-64-4
NIST Chemistry WebBook
Gmelin:16320
Gmelin
ytterbium
IUPAC
70Yb
IUPAC
Yb
IUPAC
yterbio
ChEBI
0
Lu
InChI=1S/Lu
OHSVLFRHMCKCQY-UHFFFAOYSA-N
174.96700
174.94078
[Lu]
CAS:7439-94-3
Gmelin:16202
WebElements:Lu
lutetium
chebi_ontology
71Lu
Cassiopeium
Lu
Lutetium
cassiopium
lutecio
lutecium
lutetium
CHEBI:33382
lutetium atom
CAS:7439-94-3
ChemIDplus
CAS:7439-94-3
NIST Chemistry WebBook
Gmelin:16202
Gmelin
lutetium
IUPAC
71Lu
IUPAC
Cassiopeium
ChEBI
Lu
IUPAC
Lutetium
ChEBI
cassiopium
ChEBI
lutecio
ChEBI
lutecium
ChEBI
lutetium
ChEBI
0
Th
InChI=1S/Th
ZSLUVFAKFWKJRC-UHFFFAOYSA-N
232.03810
232.03806
[Th]
CAS:7440-29-1
KEGG:C19157
WebElements:Th
thorium
chebi_ontology
90Th
Th
torio
CHEBI:33385
thorium
CAS:7440-29-1
ChemIDplus
CAS:7440-29-1
KEGG COMPOUND
CAS:7440-29-1
NIST Chemistry WebBook
thorium
IUPAC
90Th
IUPAC
Th
IUPAC
torio
ChEBI
0
Pa
InChI=1S/Pa
XLROVYAPLOFLNU-UHFFFAOYSA-N
231.03588
231.03589
[Pa]
CAS:7440-13-3
WebElements:Pa
protactinium
chebi_ontology
91Pa
Pa
brevium
protactinio
protactinium
protoactinium
CHEBI:33386
protactinium atom
CAS:7440-13-3
ChemIDplus
CAS:7440-13-3
NIST Chemistry WebBook
protactinium
IUPAC
91Pa
IUPAC
Pa
IUPAC
brevium
ChEBI
protactinio
ChEBI
protactinium
ChEBI
protoactinium
NIST_Chemistry_WebBook
0
Np
InChI=1S/Np
LFNLGNPSGWYGGD-UHFFFAOYSA-N
237.00000
237.00000
[Np]
CAS:7439-99-8
WebElements:Np
neptunium
chebi_ontology
93Np
Np
neptunio
neptunium
CHEBI:33387
neptunium atom
CAS:7439-99-8
ChemIDplus
CAS:7439-99-8
NIST Chemistry WebBook
neptunium
IUPAC
93Np
IUPAC
Np
IUPAC
neptunio
ChEBI
neptunium
ChEBI
0
Pu
InChI=1S/Pu
OYEHPCDNVJXUIW-UHFFFAOYSA-N
244.00000
244.00000
[Pu]
CAS:7440-07-5
KEGG:C19159
WebElements:Pu
plutonium
chebi_ontology
94Pu
Pu
plutonio
plutonium
CHEBI:33388
plutonium atom
CAS:7440-07-5
ChemIDplus
CAS:7440-07-5
KEGG COMPOUND
CAS:7440-07-5
NIST Chemistry WebBook
plutonium
IUPAC
94Pu
IUPAC
Pu
ChEBI
plutonio
ChEBI
plutonium
ChEBI
0
Am
InChI=1S/Am
LXQXZNRPTYVCNG-UHFFFAOYSA-N
243.00000
243.00000
[Am]
CAS:7440-35-9
WebElements:Am
americium
chebi_ontology
95Am
Am
Americium
Amerizium
americio
americium
CHEBI:33389
americium atom
CAS:7440-35-9
ChemIDplus
CAS:7440-35-9
NIST Chemistry WebBook
americium
IUPAC
95Am
IUPAC
Am
IUPAC
Americium
ChEBI
Amerizium
ChEBI
americio
ChEBI
americium
ChEBI
0
Cm
InChI=1S/Cm
NIWWFAAXEMMFMS-UHFFFAOYSA-N
247.00000
247.00000
[Cm]
CAS:7440-51-9
WebElements:Cm
curium
chebi_ontology
96Cm
Cm
curio
curium
CHEBI:33390
curium atom
CAS:7440-51-9
ChemIDplus
CAS:7440-51-9
NIST Chemistry WebBook
curium
IUPAC
96Cm
IUPAC
Cm
IUPAC
curio
ChEBI
curium
ChEBI
0
Bk
InChI=1S/Bk
PWVKJRSRVJTHTR-UHFFFAOYSA-N
247.00000
247.00000
[Bk]
CAS:7440-40-6
WebElements:Bk
berkelium
chebi_ontology
97Bk
Berkelium
Bk
berkelio
berkelium
CHEBI:33391
berkelium atom
CAS:7440-40-6
ChemIDplus
CAS:7440-40-6
NIST Chemistry WebBook
berkelium
IUPAC
97Bk
IUPAC
Berkelium
ChEBI
Bk
ChEBI
berkelio
ChEBI
berkelium
ChEBI
0
Cf
InChI=1S/Cf
HGLDOAKPQXAFKI-UHFFFAOYSA-N
251.00000
251.00000
[Cf]
CAS:7440-71-3
WebElements:Cf
californium
chebi_ontology
98Cf
Cf
Kalifornium
californio
californium
CHEBI:33392
californium atom
CAS:7440-71-3
ChemIDplus
CAS:7440-71-3
NIST Chemistry WebBook
californium
IUPAC
98Cf
ChEBI
Cf
IUPAC
Kalifornium
ChEBI
californio
ChEBI
californium
ChEBI
0
Es
InChI=1S/Es
CKBRQZNRCSJHFT-UHFFFAOYSA-N
252.00000
252.00000
[Es]
CAS:7429-92-7
WebElements:Es
einsteinium
chebi_ontology
99Es
Es
einsteinio
einsteinium
CHEBI:33393
einsteinium atom
CAS:7429-92-7
ChemIDplus
CAS:7429-92-7
NIST Chemistry WebBook
einsteinium
IUPAC
99Es
IUPAC
Es
IUPAC
einsteinio
ChEBI
einsteinium
ChEBI
0
Fm
InChI=1S/Fm
MIORUQGGZCBUGO-UHFFFAOYSA-N
257.00000
257.00000
[Fm]
CAS:7440-72-4
WebElements:Fm
fermium
chebi_ontology
100Fm
Fm
fermio
CHEBI:33394
fermium
CAS:7440-72-4
ChemIDplus
CAS:7440-72-4
NIST Chemistry WebBook
fermium
IUPAC
100Fm
IUPAC
Fm
IUPAC
fermio
ChEBI
0
Md
InChI=1S/Md
MQVSLOYRCXQRPM-UHFFFAOYSA-N
258.00000
258.00000
[Md]
CAS:7440-11-1
WebElements:Md
mendelevium
chebi_ontology
101Md
Md
Mendelevium
Unu
mendelevio
mendelevium
unnilunium
CHEBI:33395
mendelevium atom
CAS:7440-11-1
ChemIDplus
CAS:7440-11-1
NIST Chemistry WebBook
mendelevium
IUPAC
101Md
IUPAC
Md
IUPAC
Mendelevium
ChEBI
Unu
IUPAC
mendelevio
ChEBI
mendelevium
ChEBI
unnilunium
IUPAC
0
No
InChI=1S/No
ORQBXQOJMQIAOY-UHFFFAOYSA-N
259.00000
259.00000
[No]
CAS:10028-14-5
WebElements:No
Nobelium
nobelium
chebi_ontology
102No
No
Unb
nobelio
unnilbium
CHEBI:33396
nobelium
CAS:10028-14-5
ChemIDplus
CAS:10028-14-5
NIST Chemistry WebBook
Nobelium
ChEBI
nobelium
ChEBI
nobelium
IUPAC
102No
IUPAC
No
IUPAC
Unb
IUPAC
nobelio
ChEBI
unnilbium
IUPAC
0
Lr
InChI=1S/Lr
CNQCVBJFEGMYDW-UHFFFAOYSA-N
262.00000
262.00000
[Lr]
CAS:22537-19-5
WebElements:Lr
lawrencium
chebi_ontology
103Lr
Lr
Unt
laurencio
lawrencio
lawrencium
unniltrium
CHEBI:33397
lawrencium atom
CAS:22537-19-5
ChemIDplus
lawrencium
IUPAC
103Lr
IUPAC
Lr
IUPAC
Unt
IUPAC
laurencio
ChEBI
lawrencio
ChEBI
lawrencium
ChEBI
unniltrium
IUPAC
chebi_ontology
oxoacids of sulfur
sulfur oxoacids
CHEBI:33402
sulfur oxoacid
oxoacids of sulfur
ChEBI
sulfur oxoacids
ChEBI
sulfur oxoacid derivative
chebi_ontology
sulfur oxoacid derivatives
CHEBI:33424
sulfur oxoacid derivative
sulfur oxoacid derivative
ChEBI
sulfur oxoacid derivatives
ChEBI
elemental pnictogen
sulfur oxoanion
chebi_ontology
oxoanions of sulfur
sulfur oxoanions
CHEBI:33482
sulfur oxoanion
sulfur oxoanion
ChEBI
oxoanions of sulfur
ChEBI
sulfur oxoanions
ChEBI
chalcogen oxoacid
chebi_ontology
chalcogen oxoacids
CHEBI:33484
chalcogen oxoacid
chalcogen oxoacid
ChEBI
chalcogen oxoacids
ChEBI
chalcogen oxoanion
chebi_ontology
chalcogen oxoanions
CHEBI:33485
chalcogen oxoanion
chalcogen oxoanion
ChEBI
chalcogen oxoanions
ChEBI
0
[220Rn]
InChI=1S/Rn/i1-2
SYUHGPGVQRZVTB-YPZZEJLDSA-N
220.011
220.01138
[220Rn]
CAS:22481-48-7
Gmelin:297037
radon-220
chebi_ontology
(220)86Rn
(220)Rn
Tn
radon, isotope of mass 220
radon-220
thoron
CHEBI:33491
radon-220 atom
CAS:22481-48-7
ChemIDplus
Gmelin:297037
Gmelin
radon-220
IUPAC
(220)86Rn
IUPAC
(220)Rn
IUPAC
Tn
ChEBI
radon, isotope of mass 220
ChemIDplus
radon-220
ChEBI
thoron
ChemIDplus
0
[222Rn]
InChI=1S/Rn/i1+0
SYUHGPGVQRZVTB-IGMARMGPSA-N
222.018
222.01757
[222Rn]
CAS:14859-67-7
radon-222
chebi_ontology
(222)86Rn
(222)Rn
radon, isotope of mass 222
radon-222
CHEBI:33492
radon-222 atom
CAS:14859-67-7
ChemIDplus
radon-222
IUPAC
(222)86Rn
IUPAC
(222)Rn
IUPAC
radon, isotope of mass 222
ChemIDplus
radon-222
ChEBI
0
[219Rn]
InChI=1S/Rn/i1-3
SYUHGPGVQRZVTB-OIOBTWANSA-N
219.009
219.00947
[219Rn]
CAS:14835-02-0
Gmelin:297039
radon-219
chebi_ontology
(219)86Rn
(219)Rn
An
actinon
radon, isotope of mass 219
radon-219
CHEBI:33493
radon-219 atom
CAS:14835-02-0
ChemIDplus
Gmelin:297039
Gmelin
radon-219
IUPAC
(219)86Rn
IUPAC
(219)Rn
IUPAC
An
ChEBI
actinon
ChEBI
radon, isotope of mass 219
ChemIDplus
radon-219
ChEBI
transition element molecular entity
actinoid molecular entity
uranium molecular entity
chebi_ontology
alkali metal cations
CHEBI:33504
alkali metal cation
alkali metal cations
ChEBI
A zinc group element atom with a symbol Cn and atomic number 112. All its isotopes are intensely radioactive. Prior to its discovery, it had the placeholder name ununbium (in accordance with IUPAC recommendations). Following its discovery (in Darmstadt, 1996) and subsequent confirmation, the name copernicium was adopted in 2010.
0
Cn
InChI=1S/Cn
NOTIIDSZELDPOP-UHFFFAOYSA-N
NaN
0.00000
[Cn]
Wikipedia:Copernicium
copernicium
chebi_ontology
112Cn
112Cp
112Uub
Cn
Uub
ununbium
CHEBI:33517
copernicium atom
copernicium
IUPAC
112Cn
ChEBI
112Cp
IUPAC
112Uub
IUPAC
Cn
IUPAC
Uub
IUPAC
ununbium
ChEBI
ununbium
IUPAC
An atom of an element that exhibits typical metallic properties, being typically shiny, with high electrical and thermal conductivity.
CHEBI:25217
CHEBI:6788
KEGG:C00050
PMID:21784043
Wikipedia:Metal
chebi_ontology
elemental metal
elemental metals
metal element
metal elements
metals
CHEBI:33521
metal atom
PMID:21784043
Europe PMC
elemental metal
ChEBI
elemental metals
ChEBI
metal element
ChEBI
metal elements
ChEBI
metals
ChEBI
An amino-acid anion obtained by deprotonation of any alpha-amino acid.
alpha-amino-acid anion
chebi_ontology
alpha-amino acid anion
alpha-amino acid anions
alpha-amino-acid anions
CHEBI:33558
alpha-amino-acid anion
alpha-amino-acid anion
ChEBI
alpha-amino acid anion
ChEBI
alpha-amino acid anions
ChEBI
alpha-amino-acid anions
ChEBI
chebi_ontology
s-block element
s-block elements
CHEBI:33559
s-block element atom
s-block element
ChEBI
s-block elements
ChEBI
Any main group element atom belonging to the p-block of the periodic table.
chebi_ontology
p-block element
p-block elements
CHEBI:33560
p-block element atom
p-block element
ChEBI
p-block elements
ChEBI
chebi_ontology
d-block element
d-block elements
CHEBI:33561
d-block element atom
d-block element
ChEBI
d-block elements
ChEBI
chebi_ontology
f-block element
f-block elements
CHEBI:33562
f-block element atom
f-block element
ChEBI
f-block elements
ChEBI
Any compound containing an o-diphenol component.
CHEBI:134187
CHEBI:13628
CHEBI:18862
KEGG:C15571
chebi_ontology
1,2-benzenediols
a catechol
benzene-1,2-diols
CHEBI:33566
catechols
1,2-benzenediols
ChEBI
a catechol
UniProt
benzene-1,2-diols
ChEBI
4-(2-Aminoethyl)pyrocatechol [4-(2-aminoethyl)benzene-1,2-diol] and derivatives formed by substitution.
CHEBI:23056
CHEBI:3468
KEGG:C02012
Catecholamine
catecholamines
chebi_ontology
catecholamines
CHEBI:33567
catecholamine
Catecholamine
KEGG_COMPOUND
catecholamines
IUPAC
catecholamines
ChEBI
A catecholamine in which C-1 of the aminoethyl side-chain is hydroxy-substituted.
Beilstein:2210994
CAS:138-65-8
Gmelin:863925
LINCS:LSM-5181
4-(2-amino-1-hydroxyethyl)benzene-1,2-diol
chebi_ontology
noradrenalina
norepinephrine
CHEBI:33569
noradrenaline
Beilstein:2210994
Beilstein
CAS:138-65-8
ChemIDplus
CAS:138-65-8
NIST Chemistry WebBook
Gmelin:863925
Gmelin
4-(2-amino-1-hydroxyethyl)benzene-1,2-diol
IUPAC
noradrenalina
ChEBI
norepinephrine
ChEBI
CHEBI:22705
CHEBI:22711
chebi_ontology
CHEBI:33570
benzenediols
The S-enantiomer of noradrenaline.
LINCS:LSM-37072
Reaxys:2937999
4-[(1S)-2-amino-1-hydroxyethyl]benzene-1,2-diol
chebi_ontology
CHEBI:33571
(S)-noradrenaline
Reaxys:2937999
Reaxys
4-[(1S)-2-amino-1-hydroxyethyl]benzene-1,2-diol
IUPAC
A carbon oxoacid acid carrying at least one -C(=O)OH group and having the structure RC(=O)OH, where R is any any monovalent functional group. Carboxylic acids are the most common type of organic acid.
0
CHO2R
45.01740
44.99765
OC([*])=O
CHEBI:13428
CHEBI:13627
CHEBI:23027
PMID:17147560
PMID:18433345
Wikipedia:Carboxylic_acid
carboxylic acid
carboxylic acids
chebi_ontology
Carbonsaeure
Carbonsaeuren
Karbonsaeure
RC(=O)OH
acide carboxylique
acides carboxyliques
acido carboxilico
acidos carboxilicos
CHEBI:33575
carboxylic acid
PMID:17147560
Europe PMC
PMID:18433345
Europe PMC
carboxylic acid
IUPAC
carboxylic acids
IUPAC
Carbonsaeure
ChEBI
Carbonsaeuren
ChEBI
Karbonsaeure
ChEBI
RC(=O)OH
IUPAC
acide carboxylique
IUPAC
acides carboxyliques
IUPAC
acido carboxilico
IUPAC
acidos carboxilicos
IUPAC
A molecular entity containing one or more atoms from any of groups 1, 2, 13, 14, 15, 16, 17, and 18 of the periodic table.
chebi_ontology
main group compounds
main group molecular entities
CHEBI:33579
main group molecular entity
main group compounds
ChEBI
main group molecular entities
ChEBI
carbon group molecular entity
chebi_ontology
carbon group molecular entities
CHEBI:33582
carbon group molecular entity
carbon group molecular entity
ChEBI
carbon group molecular entities
ChEBI
A main group molecular entity containing one or more atoms of any noble gas.
noble gas molecular entity
chebi_ontology
noble gas compounds
noble gas molecular entities
CHEBI:33583
noble gas molecular entity
noble gas molecular entity
ChEBI
noble gas compounds
ChEBI
noble gas molecular entities
ChEBI
Any molecule that consists of a series of atoms joined together to form a ring.
Wikipedia:Cyclic_compound
chebi_ontology
cyclic compounds
CHEBI:33595
cyclic compound
cyclic compounds
ChEBI
chebi_ontology
hydrogen compounds
hydrogen molecular entities
CHEBI:33608
hydrogen molecular entity
hydrogen compounds
ChEBI
hydrogen molecular entities
ChEBI
chebi_ontology
polycyclic compounds
CHEBI:33635
polycyclic compound
polycyclic compounds
ChEBI
A molecule that features two fused rings.
chebi_ontology
bicyclic compounds
CHEBI:33636
bicyclic compound
bicyclic compounds
ChEBI
A cyclically conjugated molecular entity with a stability (due to delocalization) significantly greater than that of a hypothetical localized structure (e.g. Kekule structure) is said to possess aromatic character.
aromatic compounds
aromatic molecular entity
chebi_ontology
aromatics
aromatische Verbindungen
CHEBI:33655
aromatic compound
aromatic compounds
IUPAC
aromatic molecular entity
IUPAC
aromatics
ChEBI
aromatische Verbindungen
ChEBI
chebi_ontology
organic aromatic compounds
CHEBI:33659
organic aromatic compound
organic aromatic compounds
ChEBI
A polycyclic compound in which at least one of the rings contains at least one non-carbon atom.
heteropolycyclic compounds
chebi_ontology
polyheterocyclic compounds
CHEBI:33671
heteropolycyclic compound
heteropolycyclic compounds
IUPAC
polyheterocyclic compounds
ChEBI
A bicyclic compound in which at least one of the rings contains at least one skeletal heteroatom.
heterobicyclic compounds
chebi_ontology
CHEBI:33672
heterobicyclic compound
heterobicyclic compounds
IUPAC
An s-block molecular entity is a molecular entity containing one or more atoms of an s-block element.
s-block molecular entity
chebi_ontology
s-block compounds
s-block molecular entities
CHEBI:33674
s-block molecular entity
s-block molecular entity
ChEBI
s-block compounds
ChEBI
s-block molecular entities
ChEBI
A main group molecular entity that contains one or more atoms of a p-block element.
chebi_ontology
p-block compounds
p-block molecular entities
p-block molecular entitiy
CHEBI:33675
p-block molecular entity
p-block compounds
ChEBI
p-block molecular entities
ChEBI
p-block molecular entitiy
ChEBI
d-block molecular entity
f-block molecular entity
helium molecular entity
chebi_ontology
helium compounds
helium molecular entities
CHEBI:33679
helium molecular entity
helium molecular entity
ChEBI
helium compounds
ChEBI
helium molecular entities
ChEBI
chebi_ontology
CHEBI:33680
elemental helium
Hydrides are chemical compounds of hydrogen with other chemical elements.
chebi_ontology
CHEBI:33692
hydrides
oxygen hydride
chebi_ontology
hydrides of oxygen
oxygen hydrides
CHEBI:33693
oxygen hydride
oxygen hydride
ChEBI
hydrides of oxygen
ChEBI
oxygen hydrides
ChEBI
A macromolecule formed by a living organism.
biopolymer
chebi_ontology
Biopolymere
biomacromolecules
biopolymers
CHEBI:33694
biomacromolecule
biopolymer
IUPAC
Biopolymere
ChEBI
biomacromolecules
ChEBI
biopolymers
ChEBI
chebi_ontology
genetically encoded biomacromolecules
genetically encoded biopolymers
information biomacromolecules
information biopolymers
information macromolecule
information macromolecules
CHEBI:33695
information biomacromolecule
genetically encoded biomacromolecules
ChEBI
genetically encoded biopolymers
ChEBI
information biomacromolecules
ChEBI
information biopolymers
ChEBI
information macromolecule
ChEBI
information macromolecules
ChEBI
A macromolecule made up of nucleotide units and hydrolysable into certain pyrimidine or purine bases (usually adenine, cytosine, guanine, thymine, uracil), D-ribose or 2-deoxy-D-ribose and phosphoric acid.
nucleic acids
chebi_ontology
NA
Nukleinsaeure
Nukleinsaeuren
acide nucleique
acides nucleiques
acido nucleico
acidos nucleicos
CHEBI:33696
nucleic acid
nucleic acids
IUPAC
NA
ChEBI
Nukleinsaeure
ChEBI
Nukleinsaeuren
ChEBI
acide nucleique
ChEBI
acides nucleiques
ChEBI
acido nucleico
ChEBI
acidos nucleicos
ChEBI
High molecular weight, linear polymers, composed of nucleotides containing ribose and linked by phosphodiester bonds; RNA is central to the synthesis of proteins.
CAS:63231-63-0
ribonucleic acid
ribonucleic acids
chebi_ontology
RNA
RNS
Ribonukleinsaeure
pentosenucleic acids
ribonucleic acids
ribose nucleic acid
yeast nucleic acid
CHEBI:33697
ribonucleic acid
CAS:63231-63-0
ChemIDplus
ribonucleic acid
IUPAC
ribonucleic acids
IUPAC
RNA
IUPAC
RNA
UniProt
RNS
ChEBI
Ribonukleinsaeure
ChEBI
pentosenucleic acids
ChemIDplus
ribonucleic acids
ChEBI
ribose nucleic acid
ChEBI
yeast nucleic acid
ChEBI
chebi_ontology
canonical amino-acid residue
canonical amino-acid residues
common amino acid residues
proteinogenic amino-acid residues
standard amino acid residues
standard amino-acid residues
CHEBI:33700
proteinogenic amino-acid residue
canonical amino-acid residue
ChEBI
canonical amino-acid residues
ChEBI
common amino acid residues
ChEBI
proteinogenic amino-acid residues
ChEBI
standard amino acid residues
ChEBI
standard amino-acid residues
ChEBI
A cation consisting of more than one atom.
chebi_ontology
polyatomic cations
CHEBI:33702
polyatomic cation
polyatomic cations
ChEBI
chebi_ontology
amino acid cation
amino acid cations
amino-acid cations
CHEBI:33703
amino-acid cation
amino acid cation
ChEBI
amino acid cations
ChEBI
amino-acid cations
ChEBI
An amino acid in which the amino group is located on the carbon atom at the position alpha to the carboxy group.
0
C2H4NO2R
74.05870
74.02420
NC([*])C(O)=O
CHEBI:10208
CHEBI:13779
CHEBI:22442
CHEBI:2642
KEGG:C00045
KEGG:C05167
alpha-amino acid
chebi_ontology
Amino acid
Amino acids
alpha-amino acids
alpha-amino carboxylic acids
CHEBI:33704
alpha-amino acid
alpha-amino acid
IUPAC
Amino acid
KEGG_COMPOUND
Amino acids
KEGG_COMPOUND
alpha-amino acids
ChEBI
alpha-amino acids
JCBN
alpha-amino carboxylic acids
IUPAC
When two or more amino acids combine to form a peptide, the elements of water are removed, and what remains of each amino acid is called an amino-acid residue.
amino-acid residue
chebi_ontology
amino acid residue
amino acid residues
amino-acid residues
CHEBI:33708
amino-acid residue
amino-acid residue
IUPAC
amino acid residue
ChEBI
amino acid residues
ChEBI
amino-acid residues
JCBN
A carboxylic acid containing one or more amino groups.
CHEBI:13815
CHEBI:22477
Wikipedia:Amino_acid
chebi_ontology
Aminocarbonsaeure
Aminokarbonsaeure
Aminosaeure
amino acids
CHEBI:33709
amino acid
Aminocarbonsaeure
ChEBI
Aminokarbonsaeure
ChEBI
Aminosaeure
ChEBI
amino acids
ChEBI
An amino-acid residue derived from an alpha-amino acid.
0
C2H2NOR
56.043
56.01364
*-NC([*])C(-*)=O
chebi_ontology
alpha-amino-acid residues
an alpha-amino acid residue
CHEBI:33710
alpha-amino-acid residue
alpha-amino-acid residues
ChEBI
an alpha-amino acid residue
UniProt
chebi_ontology
alpha-amino acid cation
alpha-amino acid cations
alpha-amino-acid cations
CHEBI:33719
alpha-amino-acid cation
alpha-amino acid cation
ChEBI
alpha-amino acid cations
ChEBI
alpha-amino-acid cations
ChEBI
carbohydrate acid
chebi_ontology
carbohydrate acids
CHEBI:33720
carbohydrate acid
carbohydrate acid
ChEBI
carbohydrate acids
ChEBI
carbohydrate acid anion
chebi_ontology
carbohydrate acid anions
CHEBI:33721
carbohydrate acid anion
carbohydrate acid anion
ChEBI
carbohydrate acid anions
ChEBI
iron group molecular entity
copper group molecular entity
nickel group molecular entity
platinum molecular entity
chebi_ontology
canonical nucleoside residues
common nucleoside residues
nucleoside residue
standard nucleoside residues
CHEBI:33791
canonical nucleoside residue
canonical nucleoside residues
ChEBI
common nucleoside residues
CBN
nucleoside residue
CBN
standard nucleoside residues
ChEBI
chebi_ontology
N
Nuc
canonical ribonucleoside residues
common ribonucleoside residue
common ribonucleoside residues
standard ribonucleoside residues
CHEBI:33792
canonical ribonucleoside residue
N
CBN
Nuc
CBN
canonical ribonucleoside residues
ChEBI
common ribonucleoside residue
CBN
common ribonucleoside residues
CBN
standard ribonucleoside residues
ChEBI
The stable isotope of oxygen with relative atomic mass 17.999160 and 0.205 atom percent natural abundance.
0
[18O]
InChI=1S/O/i1+2
QVGXLLKOCUKJST-NJFSPNSNSA-N
17.999
17.99916
[18O]
CAS:14797-71-8
Gmelin:17562
oxygen-18
chebi_ontology
(18)8O
(18)O
heavy oxygen
oxygen, isotope of mass 18
oxygen-18
schwerer Sauerstoff
CHEBI:33815
oxygen-18 atom
CAS:14797-71-8
ChemIDplus
Gmelin:17562
Gmelin
oxygen-18
IUPAC
(18)8O
IUPAC
(18)O
IUPAC
heavy oxygen
ChEBI
oxygen, isotope of mass 18
ChemIDplus
oxygen-18
ChEBI
schwerer Sauerstoff
ChEBI
The stable isotope of oxygen with relative atomic mass 15.994914. The most abundant (99.76 atom percent) isotope of naturally occurring oxygen.
0
[16O]
InChI=1S/O/i1+0
QVGXLLKOCUKJST-IGMARMGPSA-N
15.995
15.99491
[16O]
Gmelin:17560
oxygen-16
chebi_ontology
(16)8O
(16)O
oxygen-16
CHEBI:33818
oxygen-16 atom
Gmelin:17560
Gmelin
oxygen-16
IUPAC
(16)8O
IUPAC
(16)O
IUPAC
oxygen-16
ChEBI
The stable isotope of oxygen with relative atomic mass 16.999131. The least abundant (0.038 atom percent) isotope of naturally occurring oxygen.
0
[17O]
InChI=1S/O/i1+1
QVGXLLKOCUKJST-OUBTZVSYSA-N
16.999
16.99913
[17O]
CAS:13968-48-4
Gmelin:17561
oxygen-17
chebi_ontology
(17)8O
(17)O
oxygen, isotope of mass 17
oxygen-17
CHEBI:33819
oxygen-17 atom
CAS:13968-48-4
ChemIDplus
Gmelin:17561
Gmelin
oxygen-17
IUPAC
(17)8O
IUPAC
(17)O
IUPAC
oxygen, isotope of mass 17
ChemIDplus
oxygen-17
ChEBI
An organic compound having at least one hydroxy group attached to a carbon atom.
CHEBI:64710
hydroxy compounds
chebi_ontology
organic alcohol
organic hydroxy compounds
CHEBI:33822
organic hydroxy compound
hydroxy compounds
IUPAC
organic alcohol
ChEBI
organic hydroxy compounds
ChEBI
Any organic molecule that consists of atoms connected in the form of a ring.
chebi_ontology
organic cyclic compounds
CHEBI:33832
organic cyclic compound
organic cyclic compounds
ChEBI
A heterocyclic compound formally derived from an arene by replacement of one or more methine (-C=) and/or vinylene (-CH=CH-) groups by trivalent or divalent heteroatoms, respectively, in such a way as to maintain the continuous pi-electron system characteristic of aromatic systems and a number of out-of-plane pi-electrons corresponding to the Hueckel rule (4n+2).
heteroarenes
chebi_ontology
hetarenes
CHEBI:33833
heteroarene
heteroarenes
IUPAC
hetarenes
IUPAC
Conjugated protein is a protein that contains a non-peptide component, usually in stoichiometric proportion.
COMe:PRX000001
conjugated proteins
chebi_ontology
complex protein
CHEBI:33837
conjugated protein
conjugated proteins
IUPAC
complex protein
COMe
A macromolecule is a molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass.
Wikipedia:Macromolecule
macromolecule
chebi_ontology
macromolecules
polymer
polymer molecule
polymers
CHEBI:33839
macromolecule
macromolecule
IUPAC
macromolecules
ChEBI
polymer
ChEBI
polymer molecule
IUPAC
polymers
ChEBI
Organic aromatic compounds having one or more hydroxy groups attached to a benzene or other arene ring.
CHEBI:13664
CHEBI:13825
CHEBI:25969
CHEBI:2857
KEGG:C15584
MetaCyc:Phenols
Wikipedia:Phenols
phenols
chebi_ontology
Aryl alcohol
a phenol
arenols
CHEBI:33853
phenols
phenols
IUPAC
Aryl alcohol
KEGG_COMPOUND
a phenol
UniProt
arenols
IUPAC
A substance used in a chemical reaction to detect, measure, examine, or produce other substances.
reagent
chebi_ontology
reactif
reactivo
reagents
CHEBI:33893
reagent
reagent
IUPAC
reactif
IUPAC
reactivo
IUPAC
reagents
ChEBI
A hexose with a (potential) aldehyde group at one end.
CHEBI:2558
aldohexose
chebi_ontology
aldohexoses
CHEBI:33917
aldohexose
aldohexose
ChEBI
aldohexoses
ChEBI
Any nutrient required in large quantities by organisms throughout their life in order to orchestrate a range of physiological functions. Macronutrients are usually chemical elements (carbon, hydrogen, nitrogen, oxygen, phosphorus and sulfur) that humans consume in the largest quantities. Calcium, sodium, magnesium and potassium are sometimes included as macronutrients because they are required in relatively large quantities compared with other vitamins and minerals.
chebi_ontology
macronutrients
CHEBI:33937
macronutrient
macronutrients
ChEBI
halide salt
gold molecular entity
An ammonium ion that is the conjugate acid of serotonin; major species at pH 7.3.
2-(5-hydroxy-1H-indol-3-yl)ethanaminium
chebi_ontology
serotonin
serotonin cation
CHEBI:350546
serotonin(1+)
2-(5-hydroxy-1H-indol-3-yl)ethanaminium
IUPAC
serotonin
UniProt
serotonin cation
ChEBI
chebi_ontology
nitrogen hydrides
CHEBI:35106
nitrogen hydride
nitrogen hydrides
ChEBI
Saturated acyclic nitrogen hydrides having the general formula NnHn+2.
chebi_ontology
azanes
CHEBI:35107
azane
azanes
ChEBI
A substance that diminishes the rate of a chemical reaction.
inhibitor
chebi_ontology
inhibidor
inhibiteur
inhibitors
CHEBI:35222
inhibitor
inhibitor
IUPAC
inhibidor
ChEBI
inhibiteur
ChEBI
inhibitors
ChEBI
A substance that increases the rate of a reaction without modifying the overall standard Gibbs energy change in the reaction.
catalyst
chebi_ontology
Katalysator
catalizador
catalyseur
CHEBI:35223
catalyst
catalyst
IUPAC
Katalysator
ChEBI
catalizador
ChEBI
catalyseur
ChEBI
fossil fuel
The zwitterionic form of an amino acid having a negatively charged carboxyl group and a positively charged amino group.
amino acid zwitterion
chebi_ontology
amino acid zwitterion
amino acid zwitterions
amino-acid zwitterions
CHEBI:35238
amino acid zwitterion
amino-acid zwitterion
amino acid zwitterion
ChEBI
amino acid zwitterion
ChEBI
amino acid zwitterions
ChEBI
amino-acid zwitterions
ChEBI
A derivative of ammonium, NH4(+), in which all four of the hydrogens bonded to nitrogen have been replaced with univalent (usually organyl) groups.
CHEBI:26470
CHEBI:8693
KEGG:C06703
quaternary ammonium ion
chebi_ontology
Quaternary amine
a quaternary ammonium
quaternary ammonium ions
CHEBI:35267
quaternary ammonium ion
quaternary ammonium ion
IUPAC
Quaternary amine
KEGG_COMPOUND
a quaternary ammonium
UniProt
quaternary ammonium ions
ChEBI
A derivative of ammonium, NH4(+), in which one (or more) of the hydrogens bonded to the nitrogen have been replaced with univalent organyl groups. The substituting carbon of the organyl group must not itself be directly attached to a heteroatom (thereby excluding protonated amides, hemiaminals, etc).
chebi_ontology
ammonium ion derivatives
azanium ion derivative
azanium ion derivatives
CHEBI:35274
ammonium ion derivative
ammonium ion derivatives
ChEBI
azanium ion derivative
ChEBI
azanium ion derivatives
ChEBI
A choline ester formed from choline and a carboxylic acid.
CHEBI:13245
CHEBI:22227
CHEBI:2463
KEGG:C01777
chebi_ontology
acylcholines
an acylcholine
CHEBI:35287
acylcholine
acylcholines
ChEBI
an acylcholine
UniProt
Any of naturally occurring compounds and synthetic analogues, based on the cyclopenta[a]phenanthrene carbon skeleton, partially or completely hydrogenated; there are usually methyl groups at C-10 and C-13, and often an alkyl group at C-17. By extension, one or more bond scissions, ring expansions and/or ring contractions of the skeleton may have occurred. Natural steroids are derived biogenetically from squalene which is a triterpene.
CHEBI:13687
CHEBI:26768
CHEBI:9263
KEGG:C00377
MetaCyc:Steroids
Steroid
steroids
chebi_ontology
a steroid
CHEBI:35341
steroid
Steroid
KEGG_COMPOUND
steroids
IUPAC
a steroid
UniProt
CHEBI:24748
CHEBI:5814
KEGG:C02159
chebi_ontology
Hydroxysteroid
hydroxy steroids
hydroxysteroids
CHEBI:35350
hydroxy steroid
Hydroxysteroid
KEGG_COMPOUND
hydroxy steroids
ChEBI
hydroxysteroids
ChEBI
Any heteroorganic entity containing at least one carbon-nitrogen bond.
organonitrogen compounds
chebi_ontology
organonitrogens
CHEBI:35352
organonitrogen compound
organonitrogen compounds
IUPAC
organonitrogens
ChEBI
Parent monosaccharides are polyhydroxy aldehydes H[CH(OH)]nC(=O)H or polyhydroxy ketones H-[CHOH]n-C(=O)[CHOH]m-H with three or more carbon atoms. The generic term 'monosaccharide' (as opposed to oligosaccharide or polysaccharide) denotes a single unit, without glycosidic connection to other such units. It includes aldoses, dialdoses, aldoketoses, ketoses and diketoses, as well as deoxy sugars, provided that the parent compound has a (potential) carbonyl group.
CHEBI:25407
CHEBI:6984
KEGG:C06698
Monosaccharide
monosaccharides
chebi_ontology
Monosaccharid
Monosacharid
monosacarido
monosacaridos
CHEBI:35381
monosaccharide
Monosaccharide
KEGG_COMPOUND
monosaccharides
IUPAC
Monosaccharid
ChEBI
Monosacharid
ChEBI
monosacarido
ChEBI
monosacaridos
IUPAC
An oxoanion is an anion derived from an oxoacid by loss of hydron(s) bound to oxygen.
CHEBI:33274
CHEBI:33436
oxoanion
chebi_ontology
oxoacid anions
oxoanions
CHEBI:35406
oxoanion
oxoanion
ChEBI
oxoacid anions
ChEBI
oxoanions
ChEBI
A substance that reduces or suppresses inflammation.
chebi_ontology
anti-inflammatory drugs
antiinflammatory agent
antiinflammatory drug
antiinflammatory drugs
CHEBI:35472
anti-inflammatory drug
anti-inflammatory drugs
ChEBI
antiinflammatory agent
ChEBI
antiinflammatory drug
ChEBI
antiinflammatory drugs
ChEBI
chebi_ontology
alkali metal salts
CHEBI:35479
alkali metal salt
alkali metal salts
ChEBI
natural product fundamental parents
chebi_ontology
CHEBI:35507
natural product fundamental parent
natural product fundamental parents
IUPAC
chebi_ontology
steroid fundamental parents
CHEBI:35508
steroid fundamental parent
steroid fundamental parents
ChEBI
cholane
chebi_ontology
CHEBI:35519
cholane
cholane
IUPAC
A drug that mimics the effects of stimulating postganglionic adrenergic sympathetic nerves. Included in this class are drugs that directly stimulate adrenergic receptors and drugs that act indirectly by provoking the release of adrenergic transmitters.
chebi_ontology
sympathomimetic
sympathomimetics
CHEBI:35524
sympathomimetic agent
sympathomimetic
ChEBI
sympathomimetics
ChEBI
A drug that affects the rate or intensity of cardiac contraction, blood vessel diameter or blood volume.
chebi_ontology
cardiovascular agent
cardiovascular drugs
CHEBI:35554
cardiovascular drug
cardiovascular agent
ChEBI
cardiovascular drugs
ChEBI
An agent that selectively binds to and activates alpha-adrenergic receptors.
chebi_ontology
alpha-adrenergic agonists
alpha-adrenergic receptor agonist
alpha-adrenoceptor agonists
CHEBI:35569
alpha-adrenergic agonist
alpha-adrenergic agonists
ChEBI
alpha-adrenergic receptor agonist
ChEBI
alpha-adrenoceptor agonists
IUPHAR
A negative ion consisting solely of carbon and oxygen atoms, and therefore having the general formula CxOy(n-) for some integers x, y and n.
carbon oxoanion
chebi_ontology
carbon oxoanions
oxocarbon anion
oxocarbon anions
CHEBI:35604
carbon oxoanion
carbon oxoanion
ChEBI
carbon oxoanions
ChEBI
oxocarbon anion
ChEBI
oxocarbon anions
ChEBI
chebi_ontology
carbon oxoacids
oxoacids of carbon
CHEBI:35605
carbon oxoacid
carbon oxoacids
ChEBI
oxoacids of carbon
ChEBI
A drug used to cause dilation of the blood vessels.
chebi_ontology
vasodilator
vasodilator agents
CHEBI:35620
vasodilator agent
vasodilator
ChEBI
vasodilator agents
ChEBI
Any carboxylic acid containing two carboxy groups.
CHEBI:23692
CHEBI:36172
CHEBI:4501
KEGG:C02028
Dicarboxylic acid
chebi_ontology
dicarboxylic acids
CHEBI:35692
dicarboxylic acid
Dicarboxylic acid
KEGG_COMPOUND
dicarboxylic acids
ChEBI
dicarboxylic acid anion
chebi_ontology
dicarboxylic acid anions
CHEBI:35693
dicarboxylic acid anion
dicarboxylic acid anion
ChEBI
dicarboxylic acid anions
ChEBI
A compound formally derived from an oxoacid RkE(=O)l(OH)m (l > 0) and an alcohol, phenol, heteroarenol, or enol by linking with formal loss of water from an acidic hydroxy group of the former and a hydroxy group of the latter.
CHEBI:23960
CHEBI:4859
KEGG:C00287
Wikipedia:Ester
Ester
chebi_ontology
esters
CHEBI:35701
ester
Ester
KEGG_COMPOUND
esters
ChEBI
chebi_ontology
glycosaminoglycan sulfate
glycosaminoglycan sulfates
sulfated glycosaminoglycans
CHEBI:35722
sulfated glycosaminoglycan
glycosaminoglycan sulfate
ChEBI
glycosaminoglycan sulfates
ChEBI
sulfated glycosaminoglycans
ChEBI
chebi_ontology
carbohydrate sulfates
carbohydrate sulphates
CHEBI:35724
carbohydrate sulfate
carbohydrate sulfates
ChEBI
carbohydrate sulphates
ChEBI
A carboxylic acid anion formed when the carboxy group of a monocarboxylic acid is deprotonated.
CHEBI:13657
CHEBI:25382
CHEBI:3407
KEGG:C00060
chebi_ontology
Carboxylate
Monocarboxylate
a monocarboxylate
monocarboxylates
monocarboxylic acid anions
CHEBI:35757
monocarboxylic acid anion
Carboxylate
KEGG_COMPOUND
Monocarboxylate
KEGG_COMPOUND
a monocarboxylate
UniProt
monocarboxylates
ChEBI
monocarboxylic acid anions
ChEBI
pnictogen hydride
chebi_ontology
pnictogen hydrides
CHEBI:35881
pnictogen hydride
pnictogen hydride
ChEBI
pnictogen hydrides
ChEBI
A substance used for its pharmacological action on any aspect of neurotransmitter systems. Neurotransmitter agents include agonists, antagonists, degradation inhibitors, uptake inhibitors, depleters, precursors, and modulators of receptor function.
chebi_ontology
neurotransmitter agents
CHEBI:35942
neurotransmitter agent
neurotransmitter agents
ChEBI
CHEBI:22867
CHEBI:50419
LIPID_MAPS_class:LMST04
chebi_ontology
bile acids and derivatives
cholanoids
CHEBI:36078
cholanoid
LIPID_MAPS_class:LMST04
LIPID MAPS
bile acids and derivatives
LIPID_MAPS
cholanoids
ChEBI
A biological macromolecule minimally consisting of one polypeptide chain synthesized at the ribosome.
CHEBI:13677
CHEBI:14911
MO:683
MeSH:D011506
NCIt:C17021
PRO:000000001
SNOMEDCT:88878007
proteins
chebi_ontology
CHEBI:36080
protein
proteins
IUPAC
inorganic chloride
chebi_ontology
bile acid anions
CHEBI:36235
bile acid anion
bile acid anions
ChEBI
A steroid acid that consists of cholane having a carboxy group in place of the methyl group at position 24.
CAS:25312-65-6
Patent:JP2008069152
Reaxys:13246008
cholan-24-oic acid
chebi_ontology
CHEBI:36237
cholanic acid
CAS:25312-65-6
ChemIDplus
Reaxys:13246008
Reaxys
cholan-24-oic acid
IUPAC
Beilstein:3214794
CAS:546-18-9
LIPID_MAPS_instance:LMST04010441
5beta-cholan-24-oic acid
5beta-cholanic acid
chebi_ontology
(5beta)-cholan-24-oic acid
(5beta,17beta)-gamma-methylandrostane-17-butanoic acid
5beta-cholanoic acid
ursocholanic acid
CHEBI:36238
5beta-cholanic acid
Beilstein:3214794
Beilstein
CAS:546-18-9
ChemIDplus
LIPID_MAPS_instance:LMST04010441
LIPID MAPS
5beta-cholan-24-oic acid
IUPAC
5beta-cholanic acid
ChemIDplus
(5beta)-cholan-24-oic acid
ChemIDplus
(5beta,17beta)-gamma-methylandrostane-17-butanoic acid
ChemIDplus
5beta-cholanoic acid
ChemIDplus
ursocholanic acid
ChemIDplus
Members of the class of cholanic acids based on a 5beta-cholane skeleton.
chebi_ontology
CHEBI:36248
5beta-cholanic acids
A salt of a bile acid.
chebi_ontology
bile acid salts
CHEBI:36277
bile acid salt
bile acid salts
ChEBI
CHEBI:23166
CHEBI:23211
chebi_ontology
CHEBI:36278
cholanic acids
Lepton is a fermion that does not experience the strong force (strong interaction). The term is derived from the Greek lambdaepsilonpitauomicronsigma (small, thin).
chebi_ontology
leptons
CHEBI:36338
lepton
leptons
ChEBI
Baryon is a fermion that does experience the strong force (strong interaction). The term is derived from the Greek betaalpharhoupsilonsigma (heavy).
chebi_ontology
baryons
CHEBI:36339
baryon
baryons
ChEBI
Particle of half-integer spin quantum number following Fermi-Dirac statistics. Fermions are named after Enrico Fermi.
fermion
chebi_ontology
fermions
CHEBI:36340
fermion
fermion
IUPAC
fermions
ChEBI
Particle of integer spin quantum number following Bose-Einstein statistics. Bosons are named after Satyendra Nath Bose.
boson
chebi_ontology
bosons
CHEBI:36341
boson
boson
IUPAC
bosons
ChEBI
A particle smaller than an atom.
Wikipedia:Subatomic_particle
chebi_ontology
subatomic particles
CHEBI:36342
subatomic particle
subatomic particles
ChEBI
A subatomic particle known to have substructure (i.e. consisting of smaller particles).
chebi_ontology
composite particles
CHEBI:36343
composite particle
composite particles
ChEBI
Hadron is a subatomic particle which experiences the strong force.
chebi_ontology
hadrons
CHEBI:36344
hadron
hadrons
ChEBI
A hadron with zero or integer spin; a strongly interacting boson. The term is derived from the Greek muepsilonsigmaomicronsigma (medium, middle).
chebi_ontology
mesons
CHEBI:36345
meson
mesons
ChEBI
A nucleus or any of its constituents in any of their energy states.
nuclear particle
chebi_ontology
CHEBI:36347
nuclear particle
nuclear particle
IUPAC
The collective name for zero-spin mesons pi(+), pi(-) and pi(0).
pi meson
pion
chebi_ontology
pi-meson
CHEBI:36348
pi meson
pi meson
ChEBI
pion
IUPAC
pi-meson
ChEBI
Elementary particle not affected by the strong force having a spin 1/2, a negative elementary charge and a rest mass of 0.113428913(17) u, or 105.658389(34) MeV.
-1
0.113428913
muon
chebi_ontology
Mueon
My-Teilchen
Myon
mu(-)
negative muon
CHEBI:36356
muon
muon
IUPAC
Mueon
ChEBI
My-Teilchen
ChEBI
Myon
ChEBI
mu(-)
IUPAC
negative muon
ChEBI
Any molecular entity consisting of more than one atom.
chebi_ontology
polyatomic entities
CHEBI:36357
polyatomic entity
polyatomic entities
ChEBI
An ion consisting of more than one atom.
chebi_ontology
polyatomic ions
CHEBI:36358
polyatomic ion
polyatomic ions
ChEBI
Any compound containing the carbonyl group, C=O. The term is commonly used in the restricted sense of aldehydes and ketones, although it actually includes carboxylic acids and derivatives.
carbonyl compounds
chebi_ontology
CHEBI:36586
carbonyl compound
carbonyl compounds
IUPAC
Organic compounds containing an oxygen atom, =O, doubly bonded to carbon or another element.
oxo compounds
chebi_ontology
organic oxo compounds
CHEBI:36587
organic oxo compound
oxo compounds
IUPAC
organic oxo compounds
ChEBI
Compounds based on a biladiene skeleton.
chebi_ontology
CHEBI:36735
biladienes
chalcogen hydride
chebi_ontology
chalcogen hydrides
CHEBI:36902
chalcogen hydride
chalcogen hydride
ChEBI
chalcogen hydrides
ChEBI
argon molecular entity
chebi_ontology
inorganic ions
CHEBI:36914
inorganic ion
inorganic ions
ChEBI
chebi_ontology
inorganic cations
CHEBI:36915
inorganic cation
inorganic cations
ChEBI
A monoatomic or polyatomic species having one or more elementary charges of the proton.
CHEBI:23058
CHEBI:3473
KEGG:C01373
Cation
cation
chebi_ontology
Kation
Kationen
cationes
cations
CHEBI:36916
cation
Cation
KEGG_COMPOUND
cation
ChEBI
cation
IUPAC
Kation
ChEBI
Kationen
ChEBI
cationes
ChEBI
cations
ChEBI
0
[14C]
InChI=1S/C/i1+2
OKTJSMMVPCPJKN-NJFSPNSNSA-N
14.003
14.00324
[14C]
CAS:14762-75-5
Wikipedia:Carbon-14
carbon-14
chebi_ontology
(14)6C
(14)C
carbon, isotope of mass 14
carbon-14
CHEBI:36927
carbon-14 atom
CAS:14762-75-5
ChemIDplus
carbon-14
IUPAC
(14)6C
IUPAC
(14)C
IUPAC
carbon, isotope of mass 14
ChemIDplus
carbon-14
ChEBI
0
[13C]
InChI=1S/C/i1+1
OKTJSMMVPCPJKN-OUBTZVSYSA-N
13.003
13.00335
[13C]
CAS:14762-74-4
carbon-13
carbon-13 atom
chebi_ontology
(13)6C
(13)C
carbon, isotope of mass 13
carbon-13
CHEBI:36928
carbon-13 atom
CAS:14762-74-4
ChemIDplus
carbon-13
IUPAC
carbon-13 atom
ChemIDplus
(13)6C
IUPAC
(13)C
IUPAC
carbon, isotope of mass 13
ChemIDplus
carbon-13
ChEBI
0
[11C]
InChI=1S/C/i1-1
OKTJSMMVPCPJKN-BJUDXGSMSA-N
11.011
11.01143
[11C]
CAS:14333-33-6
carbon-11
chebi_ontology
(11)6C
(11)C
carbon, isotope of mass 11
carbon-11
CHEBI:36929
carbon-11 atom
CAS:14333-33-6
ChemIDplus
carbon-11
IUPAC
(11)6C
IUPAC
(11)C
IUPAC
carbon, isotope of mass 11
ChemIDplus
carbon-11
ChEBI
0
[10C]
InChI=1S/C/i1-2
OKTJSMMVPCPJKN-YPZZEJLDSA-N
10.017
10.01685
[10C]
CAS:15578-68-4
carbon-10
chebi_ontology
(10)6C
(10)C
carbon, isotope of mass 10
carbon-10
CHEBI:36930
carbon-10 atom
CAS:15578-68-4
ChemIDplus
carbon-10
IUPAC
(10)6C
IUPAC
(10)C
IUPAC
carbon, isotope of mass 10
ChemIDplus
carbon-10
ChEBI
0
[12C]
InChI=1S/C/i1+0
OKTJSMMVPCPJKN-IGMARMGPSA-N
12.000
12.00000
[12C]
carbon-12
chebi_ontology
(12)6C
(12)C
carbon-12
CHEBI:36931
carbon-12 atom
carbon-12
IUPAC
(12)6C
IUPAC
(12)C
IUPAC
carbon-12
ChEBI
The radioactive isotope of oxygen with relative atomic mass 15.003065. The longest-lived oxygen radionuclide with half-life of 122.2 s.
0
[15O]
InChI=1S/O/i1-1
QVGXLLKOCUKJST-BJUDXGSMSA-N
15.003
15.00307
[15O]
CAS:13982-43-9
Gmelin:316575
oxygen-15
chebi_ontology
(15)8O
(15)O
oxygen, isotope of mass 15
oxygen-15
CHEBI:36932
oxygen-15 atom
CAS:13982-43-9
ChemIDplus
Gmelin:316575
Gmelin
oxygen-15
IUPAC
(15)8O
IUPAC
(15)O
IUPAC
oxygen, isotope of mass 15
ChemIDplus
oxygen-15
ChEBI
0
[19O]
InChI=1S/O/i1+3
QVGXLLKOCUKJST-AKLPVKDBSA-N
19.004
19.00358
[19O]
CAS:13982-18-8
oxygen-19
chebi_ontology
(19)8O
(19)O
oxygen-19
CHEBI:36933
oxygen-19 atom
CAS:13982-18-8
ChemIDplus
oxygen-19
IUPAC
(19)8O
IUPAC
(19)O
IUPAC
oxygen-19
ChEBI
The stable isotope of nitrogen with relative atomic mass 15.000109. The least abundant (0.368 atom percent) isotope of naturally occurring nitrogen.
0
N
14.007
14.00307
CAS:14390-96-6
nitrogen-15
chebi_ontology
(15)7N
(15)N
nitrogen, isotope of mass 15
nitrogen-15
CHEBI:36934
nitrogen-15 atom
CAS:14390-96-6
ChemIDplus
nitrogen-15
IUPAC
(15)7N
IUPAC
(15)N
IUPAC
nitrogen, isotope of mass 15
ChemIDplus
nitrogen-15
ChEBI
The radioactive isotope of nitrogen with relative atomic mass 13.0057386. The longest-lived nitrogen radionuclide with half-life of 9.965 min.
0
N
14.007
14.00307
CAS:13981-22-1
nitrogen-13
chebi_ontology
(13)7N
(13)N
nitrogen, isotope of mass 13
nitrogen-13
CHEBI:36935
nitrogen-13 atom
CAS:13981-22-1
ChemIDplus
nitrogen-13
IUPAC
(13)7N
IUPAC
(13)N
IUPAC
nitrogen, isotope of mass 13
ChemIDplus
nitrogen-13
ChEBI
0
N
14.007
14.00307
CAS:13981-62-9
nitrogen-16
chebi_ontology
(16)7N
(16)N
nitrogen, isotope of mass 16
nitrogen-16
CHEBI:36936
nitrogen-16 atom
CAS:13981-62-9
ChemIDplus
nitrogen-16
IUPAC
(16)7N
IUPAC
(16)N
IUPAC
nitrogen, isotope of mass 16
ChemIDplus
nitrogen-16
ChEBI
0
N
14.007
14.00307
CAS:14914-35-3
nitrogen-17
chebi_ontology
(17)7N
(17)N
nitrogen-17
CHEBI:36937
nitrogen-17 atom
CAS:14914-35-3
ChemIDplus
nitrogen-17
IUPAC
(17)7N
IUPAC
(17)N
ChEBI
nitrogen-17
ChEBI
The stable isotope of nitrogen with relative atomic mass 14.003074. The most abundant (99.63 atom percent) isotope of naturally occurring nitrogen.
0
N
14.007
14.00307
nitrogen-14
chebi_ontology
(14)7N
(14)N
nitrogen-14
CHEBI:36938
nitrogen-14 atom
nitrogen-14
IUPAC
(14)7N
IUPAC
(14)N
IUPAC
nitrogen-14
ChEBI
The radioactive isotope of fluorine with relative atomic mass 18.000938. The longest-lived fluorine radionuclide with half-life of 109.77 min.
0
[18F]
InChI=1S/F/i1-1
YCKRFDGAMUMZLT-BJUDXGSMSA-N
18.001
18.00094
[18F]
CAS:13981-56-1
DrugBank:DB13134
Wikipedia:Fluorine-18
fluorine-18
chebi_ontology
(18)9F
(18)F
fluorine, isotope of mass 18
fluorine-18
CHEBI:36939
fluorine-18 atom
CAS:13981-56-1
ChemIDplus
fluorine-18
IUPAC
(18)9F
IUPAC
(18)F
IUPAC
fluorine, isotope of mass 18
ChemIDplus
fluorine-18
ChEBI
The stable isotope of fluorine with relative atomic mass 18.998403 and nuclear spin (1)/2.
0
[19F]
InChI=1S/F/i1+0
YCKRFDGAMUMZLT-IGMARMGPSA-N
18.998
18.99840
[19F]
fluorine-19
chebi_ontology
(19)9F
(19)F
fluorine-19
CHEBI:36940
fluorine-19 atom
fluorine-19
IUPAC
(19)9F
IUPAC
(19)F
ChEBI
fluorine-19
ChEBI
chalcocarbonic acid
chalcocarbonic acids
chebi_ontology
chalcocarbonic acids
CHEBI:36961
chalcocarbonic acid
chalcocarbonic acid
ChEBI
chalcocarbonic acids
IUPAC
chalcocarbonic acids
ChEBI
An organochalcogen compound is a compound containing at least one carbon-chalcogen bond.
organochalcogen compound
chebi_ontology
organochalcogen compounds
CHEBI:36962
organochalcogen compound
organochalcogen compound
ChEBI
organochalcogen compounds
ChEBI
An organochalcogen compound containing at least one carbon-oxygen bond.
PMID:17586126
organooxygen compound
chebi_ontology
organooxygen compounds
CHEBI:36963
organooxygen compound
PMID:17586126
Europe PMC
organooxygen compound
ChEBI
organooxygen compounds
ChEBI
The radioactive isotope of helium with relative atomic mass 6.01889 and half-life of 806.7 ms.
0
[6He]
InChI=1S/He/i1+2
SWQJXJOGLNCZEY-NJFSPNSNSA-N
6.019
6.01889
[6He]
helium-6
chebi_ontology
(6)2He
(6)He
helium-6
CHEBI:37003
helium-6 atom
helium-6
IUPAC
(6)2He
IUPAC
(6)He
IUPAC
helium-6
ChEBI
The radioactive isotope of helium with relative atomic mass 8.03392 and half-life of 119.0 ms.
0
[8He]
InChI=1S/He/i1+4
SWQJXJOGLNCZEY-RNFDNDRNSA-N
8.034
8.03392
[8He]
helium-8
chebi_ontology
(8)2He
(8)He
helium-8
CHEBI:37004
helium-8 atom
helium-8
IUPAC
(8)2He
IUPAC
(8)He
IUPAC
helium-8
ChEBI
amino-acid anion
chebi_ontology
amino acid anion
amino acid anions
amino-acid anions
CHEBI:37022
amino-acid anion
amino-acid anion
ChEBI
amino acid anion
ChEBI
amino acid anions
ChEBI
amino-acid anions
ChEBI
A polysaccharide composed of glucose residues.
CHEBI:24255
CHEBI:5392
CAS:9037-91-6
KEGG:C01379
Glucan
glucan
chebi_ontology
glucans
CHEBI:37163
glucan
CAS:9037-91-6
ChemIDplus
Glucan
KEGG_COMPOUND
glucan
IUPAC
glucans
ChEBI
Glycans composed of a single type of monosaccharide residue. They are named by replacing the ending '-ose' of the sugar by '-an'.
homopolysaccharide
chebi_ontology
homoglycan
homopolysaccharides
CHEBI:37164
homopolysaccharide
homopolysaccharide
IUPAC
homoglycan
IUPAC
homopolysaccharides
ChEBI
chebi_ontology
organic hydrides
CHEBI:37175
organic hydride
organic hydrides
ChEBI
mononuclear parent hydrides
chebi_ontology
mononuclear hydride
mononuclear hydrides
CHEBI:37176
mononuclear parent hydride
mononuclear parent hydrides
IUPAC
mononuclear hydride
ChEBI
mononuclear hydrides
IUPAC
chebi_ontology
CHEBI:37246
elemental sodium
The radioactive isotope of polonium with relative atomic mass 209.98286 and half-life of 138.376 days; the only naturally occurring isotope of polonium.
0
[210Po]
InChI=1S/Po/i1+1
HZEBHPIOVYHPMT-OUBTZVSYSA-N
209.983
209.98286
[210Po]
CAS:13981-52-7
Gmelin:76756
polonium-210
chebi_ontology
(210)84Po
(210)Po
polonium, isotope of mass 210
polonium-210
CHEBI:37340
polonium-210 atom
CAS:13981-52-7
ChemIDplus
Gmelin:76756
Gmelin
polonium-210
IUPAC
(210)84Po
IUPAC
(210)Po
IUPAC
polonium, isotope of mass 210
ChemIDplus
polonium-210
ChEBI
The radioactive isotope of polonium with relative atomic mass 210.986637 and half-life of 0.516 s.
0
[211Po]
InChI=1S/Po/i1+2
HZEBHPIOVYHPMT-NJFSPNSNSA-N
210.987
210.98664
[211Po]
CAS:15735-83-8
Gmelin:41683
polonium-211
chebi_ontology
(211)84Po
(211)Po
polonium, isotope of mass 211
polonium-211
CHEBI:37341
polonium-211 atom
CAS:15735-83-8
ChemIDplus
Gmelin:41683
Gmelin
polonium-211
IUPAC
(211)84Po
IUPAC
(211)Po
IUPAC
polonium, isotope of mass 211
ChemIDplus
polonium-211
ChEBI
The radioactive isotope of polonium with relative atomic mass 211.988852 and half-life of 0.299 mus.
0
[212Po]
InChI=1S/Po/i1+3
HZEBHPIOVYHPMT-AKLPVKDBSA-N
211.989
211.98885
[212Po]
CAS:15389-34-1
Gmelin:41677
polonium-212
chebi_ontology
(212)84Po
(212)Po
polonium, isotope of mass 212
polonium-212
CHEBI:37342
polonium-212 atom
CAS:15389-34-1
ChemIDplus
Gmelin:41677
Gmelin
polonium-212
IUPAC
(212)84Po
IUPAC
(212)Po
IUPAC
polonium, isotope of mass 212
ChemIDplus
polonium-212
ChEBI
The radioactive isotope of polonium with relative atomic mass 212.9928425 and half-life of 4.2 mus.
0
[213Po]
InChI=1S/Po/i1+4
HZEBHPIOVYHPMT-RNFDNDRNSA-N
212.993
212.99284
[213Po]
CAS:15756-57-7
polonium-213
chebi_ontology
(213)84Po
(213)Po
polonium, isotope of mass 213
polonium-213
CHEBI:37343
polonium-213 atom
CAS:15756-57-7
ChemIDplus
polonium-213
IUPAC
(213)84Po
IUPAC
(213)Po
IUPAC
polonium, isotope of mass 213
ChemIDplus
polonium-213
ChEBI
The radioactive isotope of polonium with relative atomic mass 213.995186 and half-life of 164.3 mus.
0
[214Po]
InChI=1S/Po/i1+5
HZEBHPIOVYHPMT-BKFZFHPZSA-N
213.995
213.99519
[214Po]
CAS:15735-67-8
Gmelin:41679
polonium-214
chebi_ontology
(214)84Po
(214)Po
polonium, isotope of mass 214
polonium-214
CHEBI:37344
polonium-214 atom
CAS:15735-67-8
ChemIDplus
Gmelin:41679
Gmelin
polonium-214
IUPAC
(214)84Po
IUPAC
(214)Po
IUPAC
polonium, isotope of mass 214
ChemIDplus
polonium-214
ChEBI
The radioactive isotope of polonium with relative atomic mass 214.999415 and half-life of 1.781 ms.
0
[215Po]
InChI=1S/Po/i1+6
HZEBHPIOVYHPMT-LZFNBGRKSA-N
214.999
214.99941
[215Po]
CAS:15706-52-2
Gmelin:41680
polonium-215
chebi_ontology
(215)84Po
(215)Po
polonium, isotope of mass 215
polonium-215
CHEBI:37345
polonium-215 atom
CAS:15706-52-2
ChemIDplus
Gmelin:41680
Gmelin
polonium-215
IUPAC
(215)84Po
IUPAC
(215)Po
IUPAC
polonium, isotope of mass 215
ChemIDplus
polonium-215
ChEBI
The radioactive isotope of polonium with relative atomic mass 216.001905 and half-life of 0.145 s.
0
[216Po]
InChI=1S/Po/i1+7
HZEBHPIOVYHPMT-RKEGKUSMSA-N
216.002
216.00191
[216Po]
CAS:15756-58-8
Gmelin:41684
polonium-216
chebi_ontology
(216)84Po
(216)Po
polonium, isotope of mass 216
polonium-216
CHEBI:37346
polonium-216 atom
CAS:15756-58-8
ChemIDplus
Gmelin:41684
Gmelin
polonium-216
IUPAC
(216)84Po
IUPAC
(216)Po
IUPAC
polonium, isotope of mass 216
ChemIDplus
polonium-216
ChEBI
The radioactive isotope of polonium with relative atomic mass 217.006253 and half-life of < 10 s.
0
[217Po]
InChI=1S/Po/i1+8
HZEBHPIOVYHPMT-CONNIKPHSA-N
217.006
217.00625
[217Po]
polonium-217
chebi_ontology
(217)84Po
(217)Po
polonium-217
CHEBI:37347
polonium-217 atom
polonium-217
IUPAC
(217)84Po
IUPAC
(217)Po
IUPAC
polonium-217
ChEBI
The radioactive isotope of polonium with relative atomic mass 218.008966 and half-life of 3.10 min.
0
[218Po]
InChI=1S/Po/i1+9
HZEBHPIOVYHPMT-KUYOKYOWSA-N
218.009
218.00897
[218Po]
CAS:15422-74-9
Gmelin:41685
polonium-218
chebi_ontology
(218)84Po
(218)Po
polonium, isotope of mass 218
polonium-218
CHEBI:37348
polonium-218 atom
CAS:15422-74-9
ChemIDplus
Gmelin:41685
Gmelin
polonium-218
IUPAC
(218)84Po
IUPAC
(218)Po
IUPAC
polonium, isotope of mass 218
ChemIDplus
polonium-218
ChEBI
0
[190Po]
InChI=1S/Po/i1-19
HZEBHPIOVYHPMT-BTCYYSDASA-N
189.994
189.99429
[190Po]
polonium-190
chebi_ontology
(190)84Po
(190)Po
polonium-190
CHEBI:37350
polonium-190 atom
polonium-190
IUPAC
(190)84Po
IUPAC
(190)Po
IUPAC
polonium-190
ChEBI
0
[191Po]
InChI=1S/Po/i1-18
HZEBHPIOVYHPMT-ZWLOOBQPSA-N
190.995
190.99465
[191Po]
polonium-191
chebi_ontology
(191)84Po
(191)Po
polonium-191
CHEBI:37351
polonium-191 atom
polonium-191
IUPAC
(191)84Po
IUPAC
(191)Po
IUPAC
polonium-191
ChEBI
0
[192Po]
InChI=1S/Po/i1-17
HZEBHPIOVYHPMT-MEAORNGASA-N
191.990
191.99033
[192Po]
polonium-192
chebi_ontology
(192)84Po
(192)Po
polonium-192
CHEBI:37352
polonium-192 atom
polonium-192
IUPAC
(192)84Po
IUPAC
(192)Po
IUPAC
polonium-192
ChEBI
0
[193Po]
InChI=1S/Po/i1-16
HZEBHPIOVYHPMT-KLOSUXQXSA-N
192.991
192.99110
[193Po]
polonium-193
chebi_ontology
(193)84Po
(193)Po
polonium-193
CHEBI:37353
polonium-193 atom
polonium-193
IUPAC
(193)84Po
IUPAC
(193)Po
IUPAC
polonium-193
ChEBI
0
[194Po]
InChI=1S/Po/i1-15
HZEBHPIOVYHPMT-LPJXZZDMSA-N
193.988
193.98828
[194Po]
polonium-194
chebi_ontology
(194)84Po
(194)Po
polonium-194
CHEBI:37354
polonium-194 atom
polonium-194
IUPAC
(194)84Po
IUPAC
(194)Po
IUPAC
polonium-194
ChEBI
0
[195Po]
InChI=1S/Po/i1-14
HZEBHPIOVYHPMT-DWTUDRKQSA-N
194.988
194.98804
[195Po]
polonium-195
chebi_ontology
(195)84Po
(195)Po
polonium-195
CHEBI:37355
polonium-195 atom
polonium-195
IUPAC
(195)84Po
IUPAC
(195)Po
IUPAC
polonium-195
ChEBI
0
[196Po]
InChI=1S/Po/i1-13
HZEBHPIOVYHPMT-QAPNMCNYSA-N
195.985
195.98547
[196Po]
polonium-196
chebi_ontology
(196)84Po
(196)Po
polonium-196
CHEBI:37356
polonium-196 atom
polonium-196
IUPAC
(196)84Po
IUPAC
(196)Po
IUPAC
polonium-196
ChEBI
0
[197Po]
InChI=1S/Po/i1-12
HZEBHPIOVYHPMT-DFNMHJECSA-N
196.986
196.98557
[197Po]
polonium-197
chebi_ontology
(197)84Po
(197)Po
polonium-197
CHEBI:37357
polonium-197 atom
polonium-197
IUPAC
(197)84Po
ChEBI
(197)Po
ChEBI
polonium-197
ChEBI
0
[198Po]
InChI=1S/Po/i1-11
HZEBHPIOVYHPMT-DSSHQIQSSA-N
197.984
197.98402
[198Po]
polonium-198
chebi_ontology
(198)84Po
(198)Po
polonium-198
CHEBI:37358
polonium-198 atom
polonium-198
IUPAC
(198)84Po
IUPAC
(198)Po
IUPAC
polonium-198
ChEBI
0
[199Po]
InChI=1S/Po/i1-10
HZEBHPIOVYHPMT-CBESVEIWSA-N
198.985
198.98504
[199Po]
polonium-199
chebi_ontology
(199)84Po
(199)Po
polonium-199
CHEBI:37359
polonium-199 atom
polonium-199
IUPAC
(199)84Po
IUPAC
(199)Po
IUPAC
polonium-199
ChEBI
0
[200Po]
InChI=1S/Po/i1-9
HZEBHPIOVYHPMT-DBXDQKISSA-N
199.982
199.98173
[200Po]
polonium-200
chebi_ontology
(200)84Po
(200)Po
polonium-200
CHEBI:37360
polonium-200 atom
polonium-200
IUPAC
(200)84Po
IUPAC
(200)Po
IUPAC
polonium-200
ChEBI
0
[201Po]
InChI=1S/Po/i1-8
HZEBHPIOVYHPMT-QQVBLGSISA-N
200.982
200.98221
[201Po]
polonium-201
chebi_ontology
(201)84Po
(201)Po
polonium-201
CHEBI:37361
polonium-201 atom
polonium-201
IUPAC
(201)84Po
IUPAC
(201)Po
IUPAC
polonium-201
ChEBI
0
[202Po]
InChI=1S/Po/i1-7
HZEBHPIOVYHPMT-NOHWODKXSA-N
201.981
201.98070
[202Po]
polonium-202
chebi_ontology
(202)84Po
(202)Po
polonium-202
CHEBI:37362
polonium-202 atom
polonium-202
IUPAC
(202)84Po
IUPAC
(202)Po
IUPAC
polonium-202
ChEBI
The radioactive isotope of polonium with relative atomic mass 202.981413 and half-life of 36.7 min.
0
[203Po]
InChI=1S/Po/i1-6
HZEBHPIOVYHPMT-VENIDDJXSA-N
202.981
202.98141
[203Po]
CAS:16729-74-1
polonium-203
chebi_ontology
(203)84Po
(203)Po
polonium, isotope of mass 203
polonium-203
CHEBI:37363
polonium-203 atom
CAS:16729-74-1
ChemIDplus
polonium-203
IUPAC
(203)84Po
IUPAC
(203)Po
IUPAC
polonium, isotope of mass 203
ChemIDplus
polonium-203
ChEBI
0
[204Po]
InChI=1S/Po/i1-5
HZEBHPIOVYHPMT-FTXFMUIASA-N
203.980
203.98031
[204Po]
polonium-204
chebi_ontology
(204)84Po
(204)Po
polonium-204
CHEBI:37364
polonium-204 atom
polonium-204
IUPAC
(204)84Po
IUPAC
(204)Po
IUPAC
polonium-204
ChEBI
The radioactive isotope of polonium with relative atomic mass 204.981165 and half-life of 1.66 h.
0
[205Po]
InChI=1S/Po/i1-4
HZEBHPIOVYHPMT-AHCXROLUSA-N
204.981
204.98117
[205Po]
CAS:16729-76-3
polonium-205
chebi_ontology
(205)84Po
(205)Po
polonium, isotope of mass 205
polonium-205
CHEBI:37365
polonium-205 atom
CAS:16729-76-3
ChemIDplus
polonium-205
IUPAC
(205)84Po
IUPAC
(205)Po
IUPAC
polonium, isotope of mass 205
ChemIDplus
polonium-205
ChEBI
The radioactive isotope of polonium with relative atomic mass 205.98047 and half-life of 8.8 days.
0
[206Po]
InChI=1S/Po/i1-3
HZEBHPIOVYHPMT-OIOBTWANSA-N
205.980
205.98047
[206Po]
polonium-206
chebi_ontology
(206)84Po
(206)Po
polonium-206
CHEBI:37366
polonium-206 atom
polonium-206
IUPAC
(206)84Po
IUPAC
(206)Po
IUPAC
polonium-206
ChEBI
The radioactive isotope of polonium with relative atomic mass 206.981578 and half-life of 5.80 h.
0
[207Po]
InChI=1S/Po/i1-2
HZEBHPIOVYHPMT-YPZZEJLDSA-N
206.982
206.98158
[207Po]
CAS:15720-45-3
polonium-207
chebi_ontology
(207)84Po
(207)Po
polonium, isotope of mass 207
polonium-207
CHEBI:37367
polonium-207 atom
CAS:15720-45-3
ChemIDplus
polonium-207
IUPAC
(207)84Po
IUPAC
(207)Po
IUPAC
polonium, isotope of mass 207
ChemIDplus
polonium-207
ChEBI
The radioactive isotope of polonium with relative atomic mass 207.98123 and half-life of 2.898 years.
0
[208Po]
InChI=1S/Po/i1-1
HZEBHPIOVYHPMT-BJUDXGSMSA-N
207.981
207.98123
[208Po]
polonium-208
chebi_ontology
(208)84Po
(208)Po
polonium-208
CHEBI:37368
polonium-208 atom
polonium-208
IUPAC
(208)84Po
IUPAC
(208)Po
IUPAC
polonium-208
ChEBI
The radioactive isotope of polonium with relative atomic mass 208.982404 and half-life of 102 years.
0
[209Po]
InChI=1S/Po/i1+0
HZEBHPIOVYHPMT-IGMARMGPSA-N
208.982
208.98242
[209Po]
polonium-209
chebi_ontology
(209)84Po
(209)Po
polonium-209
CHEBI:37369
polonium-209 atom
polonium-209
IUPAC
(209)84Po
IUPAC
(209)Po
IUPAC
polonium-209
ChEBI
Any of the group of polysaccharides composed of alternating units from uronic acids and glycosamines, and commonly partially esterified with sulfuric acid.
CHEBI:25425
CHEBI:7011
KEGG:C05114
Mucopolysaccharide
mucopolysaccharides
chebi_ontology
Mucopolysaccharid
Mukopolysaccharid
mucopolisacarido
mucopolisacaridos
CHEBI:37395
mucopolysaccharide
Mucopolysaccharide
KEGG_COMPOUND
mucopolysaccharides
IUPAC
Mucopolysaccharid
ChEBI
Mukopolysaccharid
ChEBI
mucopolisacarido
ChEBI
mucopolisacaridos
IUPAC
An acid is a molecular entity capable of donating a hydron (Bronsted acid) or capable of forming a covalent bond with an electron pair (Lewis acid).
CHEBI:13800
CHEBI:13801
CHEBI:22209
CHEBI:2426
KEGG:C00174
Acid
acid
chebi_ontology
Saeure
Saeuren
acide
acido
acids
CHEBI:37527
acid
Acid
KEGG_COMPOUND
acid
IUPAC
Saeure
ChEBI
Saeuren
ChEBI
acide
IUPAC
acido
ChEBI
acids
ChEBI
A molecular entity consisting of two or more chemical elements.
chebi_ontology
chemical compound
heteroatomic molecular entities
CHEBI:37577
heteroatomic molecular entity
chemical compound
ChEBI
heteroatomic molecular entities
ChEBI
halide
An amide of a carboxylic acid, having the structure RC(=O)NR2. The term is used as a suffix in systematic name formation to denote the -C(=O)NH2 group including its carbon atom.
0
CNOR3
42.01680
41.99799
[*]C(=O)N([*])[*]
CHEBI:35354
CHEBI:35355
carboxamides
chebi_ontology
carboxamides
primary carboxamide
CHEBI:37622
carboxamide
carboxamides
IUPAC
carboxamides
ChEBI
primary carboxamide
ChEBI
glucopyranose
chebi_ontology
CHEBI:37661
glucopyranose
glucopyranose
IUPAC
The stable isotope of thallium with relative atomic mass 202.9723. The least abundant (29.524 atom percent) isotope of naturally occurring thallium.
0
[203Tl]
InChI=1S/Tl/i1-1
BKVIYDNLLOSFOA-BJUDXGSMSA-N
202.972
202.97234
[203Tl]
CAS:14280-48-9
thallium-203
chebi_ontology
(203)81Tl
(203)Tl
thallium, isotope of mass 203
CHEBI:37802
thallium-203
CAS:14280-48-9
ChemIDplus
thallium-203
IUPAC
(203)81Tl
IUPAC
(203)Tl
IUPAC
thallium, isotope of mass 203
ChemIDplus
The stable isotope of thallium with relative atomic mass 204.9744. The most abundant (70.476 atom percent) isotope of naturally occurring thallium.
0
[205Tl]
InChI=1S/Tl/i1+1
BKVIYDNLLOSFOA-OUBTZVSYSA-N
204.974
204.97443
[205Tl]
CAS:14280-49-0
Gmelin:557319
thallium-205
chebi_ontology
(205)81Tl
(205)Tl
thallium, isotope of mass 205
CHEBI:37803
thallium-205
CAS:14280-49-0
ChemIDplus
Gmelin:557319
Gmelin
thallium-205
IUPAC
(205)81Tl
IUPAC
(205)Tl
IUPAC
thallium, isotope of mass 205
ChemIDplus
The radioactive isotope of thallium with relative atomic mass 200.9708 and half-life of 72.912 hours.
0
[201Tl]
InChI=1S/Tl/i1-3
BKVIYDNLLOSFOA-OIOBTWANSA-N
200.971
200.97080
[201Tl]
CAS:15064-65-0
thallium-201
chebi_ontology
(201)81Tl
(201)Tl
thallium, isotope of mass 201
CHEBI:37804
thallium-201
CAS:15064-65-0
ChemIDplus
thallium-201
IUPAC
(201)81Tl
IUPAC
(201)Tl
IUPAC
thallium, isotope of mass 201
ChemIDplus
The radioactive isotope of thallium with relative atomic mass 198.9698 and half-life of 7.42 hours.
0
[199Tl]
InChI=1S/Tl/i1-5
BKVIYDNLLOSFOA-FTXFMUIASA-N
198.970
198.96981
[199Tl]
CAS:15064-66-1
Gmelin:1491863
thallium-199
chebi_ontology
(199)81Tl
(199)Tl
thallium, isotope of mass 199
CHEBI:37805
thallium-199
CAS:15064-66-1
ChemIDplus
Gmelin:1491863
Gmelin
thallium-199
IUPAC
(199)81Tl
IUPAC
(199)Tl
IUPAC
thallium, isotope of mass 199
ChemIDplus
sulfuric acid derivative
chebi_ontology
sulfuric acid derivatives
CHEBI:37826
sulfuric acid derivative
sulfuric acid derivative
ChEBI
sulfuric acid derivatives
ChEBI
A carboacyl group is a group formed by loss of at least one OH from the carboxy group of a carboxylic acid.
carboacyl groups
carboxylic acyl group
chebi_ontology
carboxylic acyl groups
CHEBI:37838
carboacyl group
carboacyl groups
IUPAC
carboxylic acyl group
IUPAC
carboxylic acyl groups
IUPAC
An agent that selectively binds to and activates adrenergic receptors.
chebi_ontology
adrenergic agonists
adrenergic receptor agonist
adrenoceptor agonists
adrenomimetic
adrenomimetics
CHEBI:37886
adrenergic agonist
adrenergic agonists
ChEBI
adrenergic receptor agonist
ChEBI
adrenoceptor agonists
IUPHAR
adrenomimetic
ChEBI
adrenomimetics
ChEBI
Any agent that acts on an adrenergic receptor or affects the life cycle of an adrenergic transmitter.
chebi_ontology
adrenergic agents
adrenergic drug
adrenergic drugs
adrenergic neuron agents
adrenergics
CHEBI:37962
adrenergic agent
adrenergic agents
ChEBI
adrenergic drug
ChEBI
adrenergic drugs
ChEBI
adrenergic neuron agents
ChEBI
adrenergics
ChEBI
The stable isotope of aluminium with relative atomic mass 26.98153 and nuclear spin (5)/2.
0
[27Al]
InChI=1S/Al/i1+0
XAGFODPZIPBFFR-IGMARMGPSA-N
26.982
26.98154
[27Al]
aluminium-27
chebi_ontology
(27)13Al
(27)Al
aluminium-27
aluminum, isotope of mass 27
aluminum-27
CHEBI:37968
aluminium-27 atom
aluminium-27
IUPAC
(27)13Al
IUPAC
(27)Al
IUPAC
aluminium-27
ChEBI
aluminum, isotope of mass 27
ChEBI
aluminum-27
ChEBI
The radioactive isotope of aluminium with relative atomic mass 25.986892 and half-life of 717,000 years.
0
[26Al]
InChI=1S/Al/i1-1
XAGFODPZIPBFFR-BJUDXGSMSA-N
25.987
25.98689
[26Al]
CAS:14682-66-7
aluminium-26
chebi_ontology
(26)13Al
(26)Al
aluminium-26
aluminum, isotope of mass 26
aluminum-26
CHEBI:37969
aluminium-26 atom
CAS:14682-66-7
ChemIDplus
aluminium-26
IUPAC
(26)13Al
IUPAC
(26)Al
IUPAC
aluminium-26
ChEBI
aluminum, isotope of mass 26
ChemIDplus
aluminum-26
ChemIDplus
The radioactive isotope of aluminium with relative atomic mass 27.981910 and half-life of 2.25 min.
0
[28Al]
InChI=1S/Al/i1+1
XAGFODPZIPBFFR-OUBTZVSYSA-N
27.982
27.98191
[28Al]
CAS:14999-04-3
aluminium-28
chebi_ontology
(28)13Al
(28)Al
aluminium-28
aluminum, isotope of mass 28
aluminum-28
CHEBI:37970
aluminium-28 atom
CAS:14999-04-3
ChemIDplus
aluminium-28
IUPAC
(28)13Al
IUPAC
(28)Al
IUPAC
aluminium-28
ChEBI
aluminum, isotope of mass 28
ChemIDplus
aluminum-28
ChemIDplus
The stable isotope of phosphorus with relative atomic mass 30.973762 and nuclear spin (1)/2.
0
[31P]
InChI=1S/P/i1+0
OAICVXFJPJFONN-IGMARMGPSA-N
30.974
30.97376
[31P]
phosphorus-31
chebi_ontology
(31)15P
(31)P
phosphorus-31
CHEBI:37971
phosphorus-31 atom
phosphorus-31
IUPAC
(31)15P
IUPAC
(31)P
IUPAC
phosphorus-31
ChEBI
The radioactive isotope of phosphorus with relative atomic mass 31.973907 and half-life of 14.26 days.
0
[32P]
InChI=1S/P/i1+1
OAICVXFJPJFONN-OUBTZVSYSA-N
31.974
31.97391
[32P]
CAS:14596-37-3
KEGG:C19162
phosphorus-32
chebi_ontology
(32)15P
(32)P
Phosphorus, isotope of mass 32
phosphorus, isotope of mass 32
phosphorus-32
CHEBI:37972
phosphorus-32 atom
CAS:14596-37-3
ChemIDplus
CAS:14596-37-3
KEGG COMPOUND
phosphorus-32
IUPAC
(32)15P
IUPAC
(32)P
IUPAC
Phosphorus, isotope of mass 32
KEGG_COMPOUND
phosphorus, isotope of mass 32
ChemIDplus
phosphorus-32
ChEBI
The radioactive isotope of phosphorus with relative atomic mass 32.971725, half-life of 25.34 days and nuclear spin (1)/2.
0
[33P]
InChI=1S/P/i1+2
OAICVXFJPJFONN-NJFSPNSNSA-N
32.972
32.97173
[33P]
CAS:15749-66-3
phosphorus-33
chebi_ontology
(33)15P
(33)P
phosphorus, isotope of mass 33
phosphorus-33
CHEBI:37973
phosphorus-33 atom
CAS:15749-66-3
ChemIDplus
phosphorus-33
IUPAC
(33)15P
IUPAC
(33)P
IUPAC
phosphorus, isotope of mass 33
ChemIDplus
phosphorus-33
ChEBI
The stable isotope of silicon with relative atomic mass 28.9764947, 4.683 atom percent natural abundancy, and nuclear spin (1)/2.
0
[29Si]
InChI=1S/Si/i1+1
XUIMIQQOPSSXEZ-OUBTZVSYSA-N
28.976
28.97649
[29Si]
silicon-29
chebi_ontology
(29)14Si
(29)Si
silicon-29
CHEBI:37974
silicon-29 atom
silicon-29
IUPAC
(29)14Si
IUPAC
(29)Si
IUPAC
silicon-29
ChEBI
The stable isotope of silicon with relative atomic mass 27.9769265. The most abundant (92.23 atom percent) isotope of naturally occurring silicon.
0
[28Si]
InChI=1S/Si/i1+0
XUIMIQQOPSSXEZ-IGMARMGPSA-N
27.977
27.97693
[28Si]
silicon-28
chebi_ontology
(28)14Si
(28)Si
silicon-28
CHEBI:37975
silicon-28 atom
silicon-28
IUPAC
(28)14Si
IUPAC
(28)Si
IUPAC
silicon-28
ChEBI
The stable isotope of silicon with relative atomic mass 29.9737702. The least abundant (3.09 atom percent) isotope of naturally occurring silicon.
0
[30Si]
InChI=1S/Si/i1+2
XUIMIQQOPSSXEZ-NJFSPNSNSA-N
29.974
29.97377
[30Si]
silicon-30
chebi_ontology
(30)14Si
(30)Si
silicon-30
CHEBI:37976
silicon-30 atom
silicon-30
IUPAC
(30)14Si
IUPAC
(30)Si
IUPAC
silicon-30
ChEBI
The radioactive isotope of silicon with relative atomic mass 30.975363, half-life of 2.62 hours and nuclear spin (3)/2.
0
[31Si]
InChI=1S/Si/i1+3
XUIMIQQOPSSXEZ-AKLPVKDBSA-N
30.975
30.97536
[31Si]
CAS:14276-49-4
silicon-31
chebi_ontology
(31)14Si
(31)Si
silicon, isotope of mass 31
silicon-31
CHEBI:37977
silicon-31 atom
CAS:14276-49-4
ChemIDplus
silicon-31
IUPAC
(31)14Si
IUPAC
(31)Si
IUPAC
silicon, isotope of mass 31
ChemIDplus
silicon-31
ChEBI
The radioactive isotope of silicon with relative atomic mass 31.974148. The longest-lived silicon radionuclide with half-life of 172 years.
0
[32Si]
InChI=1S/Si/i1+4
XUIMIQQOPSSXEZ-RNFDNDRNSA-N
31.974
31.97415
[32Si]
CAS:15092-72-5
silicon-32
chebi_ontology
(32)14Si
(32)Si
silicon, isotope of mass 32
silicon-32
CHEBI:37978
silicon-32 atom
CAS:15092-72-5
ChemIDplus
silicon-32
IUPAC
(32)14Si
IUPAC
(32)Si
IUPAC
silicon, isotope of mass 32
ChemIDplus
silicon-32
ChEBI
The stable isotope of sulfur with relative atomic mass 31.972071. The most abundant (95.02 atom percent) isotope of naturally occurring sulfur.
0
[32S]
InChI=1S/S/i1+0
NINIDFKCEFEMDL-IGMARMGPSA-N
31.972
31.97207
[32S]
CAS:13981-57-2
sulfur-32
chebi_ontology
(32)16S
(32)S
sulfur, isotope of mass 32
sulfur-32
sulphur-32
CHEBI:37979
sulfur-32 atom
CAS:13981-57-2
ChemIDplus
sulfur-32
IUPAC
(32)16S
IUPAC
(32)S
IUPAC
sulfur, isotope of mass 32
ChemIDplus
sulfur-32
ChEBI
sulphur-32
ChEBI
The stable isotope of sulfur with relative atomic mass 32.9714585, 0.75 atom percent natural abundance, and nuclear spin (3)/2.
0
[33S]
InChI=1S/S/i1+1
NINIDFKCEFEMDL-OUBTZVSYSA-N
32.971
32.97146
[33S]
CAS:14257-58-0
sulfur-33
chebi_ontology
(33)16S
(33)S
sulfur, isotope of mass 33
sulfur-33
sulphur-33
CHEBI:37980
sulfur-33 atom
CAS:14257-58-0
ChemIDplus
sulfur-33
IUPAC
(33)16S
IUPAC
(33)S
IUPAC
sulfur, isotope of mass 33
ChemIDplus
sulfur-33
ChEBI
sulphur-33
ChEBI
The stable isotope of sulfur with relative atomic mass 33.9678668 and 4.21 atom percent natural abundance.
0
[34S]
InChI=1S/S/i1+2
NINIDFKCEFEMDL-NJFSPNSNSA-N
33.968
33.96787
[34S]
CAS:13965-97-4
sulfur-34
chebi_ontology
(34)16S
(34)S
sulfur, isotope of mass 34
sulfur-34
sulphur-34
CHEBI:37981
sulfur-34 atom
CAS:13965-97-4
ChemIDplus
sulfur-34
IUPAC
(34)16S
IUPAC
(34)S
IUPAC
sulfur, isotope of mass 34
ChemIDplus
sulfur-34
ChEBI
sulphur-34
ChEBI
The stable isotope of sulfur with relative atomic mass 35.9670809. The least abundant (0.02 atom percent) isotope of naturally occurring sulfur.
0
[36S]
InChI=1S/S/i1+4
NINIDFKCEFEMDL-RNFDNDRNSA-N
35.967
35.96708
[36S]
CAS:14682-80-5
sulfur-36
chebi_ontology
(36)16S
(36)S
sulfur, isotope of mass 36
sulfur-36
sulphur-36
CHEBI:37982
sulfur-36 atom
CAS:14682-80-5
ChemIDplus
sulfur-36
IUPAC
(36)16S
IUPAC
(36)S
IUPAC
sulfur, isotope of mass 36
ChemIDplus
sulfur-36
ChEBI
sulphur-36
ChEBI
The radioactive isotope of sulfur with relative atomic mass 34.9690322 and nuclear spin (3)/2. The longest-lived sulfur radionuclide with half-life of 87.5 days.
0
[35S]
InChI=1S/S/i1+3
NINIDFKCEFEMDL-AKLPVKDBSA-N
34.969
34.96903
[35S]
CAS:15117-53-0
sulfur-35
chebi_ontology
(35)16S
(35)S
sulfur, isotope of mass 35
sulfur-35
sulphur-35
CHEBI:37983
sulfur-35 atom
CAS:15117-53-0
ChemIDplus
sulfur-35
IUPAC
(35)16S
IUPAC
(35)S
IUPAC
sulfur, isotope of mass 35
ChemIDplus
sulfur-35
ChEBI
sulphur-35
ChEBI
The radioactive isotope of sulfur with relative atomic mass 36.9711257 and half-life of 5.05 min.
0
[37S]
InChI=1S/S/i1+5
NINIDFKCEFEMDL-BKFZFHPZSA-N
36.971
36.97113
[37S]
CAS:15753-06-7
sulfur-37
chebi_ontology
(37)16S
(37)S
sulfur, isotope of mass 37
sulfur-37
sulphur-37
CHEBI:37984
sulfur-37 atom
CAS:15753-06-7
ChemIDplus
sulfur-37
IUPAC
(37)16S
IUPAC
(37)S
IUPAC
sulfur, isotope of mass 37
ChemIDplus
sulfur-37
ChEBI
sulphur-37
ChEBI
The radioactive isotope of sulfur with relative atomic mass 37.97116 and half-life of 170.3 min.
0
[38S]
InChI=1S/S/i1+6
NINIDFKCEFEMDL-LZFNBGRKSA-N
37.971
37.97116
[38S]
CAS:15759-21-4
sulfur-38
chebi_ontology
(38)16S
(38)S
sulfur, isotope of mass 38
sulfur-38
sulphur-38
CHEBI:37985
sulfur-38 atom
CAS:15759-21-4
ChemIDplus
sulfur-38
IUPAC
(38)16S
IUPAC
(38)S
IUPAC
sulfur, isotope of mass 38
ChemIDplus
sulfur-38
ChEBI
sulphur-38
ChEBI
A compound composed of two or more pyrrole units.
Beilstein:8538310
chebi_ontology
PPys
poly(pyrrole)s
polypyrroles
CHEBI:38077
polypyrrole
Beilstein:8538310
Beilstein
PPys
ChEBI
poly(pyrrole)s
ChEBI
polypyrroles
ChEBI
Any organonitrogen compound containing a cyclic component with nitrogen and at least one other element as ring member atoms.
chebi_ontology
heterocyclic organonitrogen compounds
organonitrogen heterocyclic compounds
CHEBI:38101
organonitrogen heterocyclic compound
heterocyclic organonitrogen compounds
ChEBI
organonitrogen heterocyclic compounds
ChEBI
CHEBI:25429
CHEBI:38075
chebi_ontology
organic heteropolycyclic compounds
CHEBI:38166
organic heteropolycyclic compound
organic heteropolycyclic compounds
ChEBI
chebi_ontology
polycyclic heteroarenes
CHEBI:38180
polycyclic heteroarene
polycyclic heteroarenes
ChEBI
Any drug used for its actions on cholinergic systems. Included here are agonists and antagonists, drugs that affect the life cycle of acetylcholine, and drugs that affect the survival of cholinergic neurons.
chebi_ontology
cholinergic agent
cholinergic drugs
cholinomimetic
CHEBI:38323
cholinergic drug
cholinergic agent
ChEBI
cholinergic drugs
ChEBI
cholinomimetic
ChEBI
Any drug that binds to and activates cholinergic receptors.
chebi_ontology
acetylcholine agonist
acetylcholine agonists
acetylcholine receptor agonist
cholinergic agonists
cholinomimetic
cholinomimetics
CHEBI:38324
cholinergic agonist
acetylcholine agonist
ChEBI
acetylcholine agonists
ChEBI
acetylcholine receptor agonist
IUPHAR
cholinergic agonists
ChEBI
cholinomimetic
ChEBI
cholinomimetics
ChEBI
Any drug that binds to and activates a muscarinic cholinergic receptor.
chebi_ontology
muscarinic acetylcholine receptor agonist
muscarinic agonists
muscarinic cholinergic agonist
muscarinic cholinergic agonists
CHEBI:38325
muscarinic agonist
muscarinic acetylcholine receptor agonist
ChEBI
muscarinic agonists
ChEBI
muscarinic cholinergic agonist
ChEBI
muscarinic cholinergic agonists
ChEBI
CHEBI:22503
CHEBI:24792
chebi_ontology
aminoalkylindoles
CHEBI:38631
aminoalkylindole
aminoalkylindoles
ChEBI
organic sodium salt
chebi_ontology
organic sodium salts
CHEBI:38700
organic sodium salt
organic sodium salt
ChEBI
organic sodium salts
ChEBI
inorganic sodium salt
Any dianion containing at least one carboxy group.
carboxylic acid dianion
chebi_ontology
carboxylic acid dianions
CHEBI:38716
carboxylic acid dianion
carboxylic acid dianion
ChEBI
carboxylic acid dianions
ChEBI
An alkaloid containing an indole skeleton.
CHEBI:24795
CHEBI:5901
KEGG:C06073
Wikipedia:Indole_alkaloid
Indole alkaloid
chebi_ontology
indole alkaloids
CHEBI:38958
indole alkaloid
Indole alkaloid
KEGG_COMPOUND
indole alkaloids
ChEBI
A molecular entity capable of donating a hydron to an acceptor (Bronsted base).
Bronsted acid
chebi_ontology
Bronsted-Saeure
acide de Bronsted
donneur d'hydron
hydron donor
CHEBI:39141
Bronsted acid
Bronsted acid
IUPAC
Bronsted-Saeure
ChEBI
acide de Bronsted
IUPAC
donneur d'hydron
IUPAC
hydron donor
IUPAC
A molecular entity capable of accepting a hydron from a donor (Bronsted acid).
Bronsted base
chebi_ontology
Bronsted-Base
accepteur d'hydron
base de Bronsted
hydron acceptor
CHEBI:39142
Bronsted base
Bronsted base
IUPAC
Bronsted-Base
ChEBI
accepteur d'hydron
IUPAC
base de Bronsted
IUPAC
hydron acceptor
IUPAC
A molecular entity able to provide a pair of electrons and thus capable of forming a covalent bond with an electron-pair acceptor (Lewis acid), thereby producing a Lewis adduct.
Lewis base
chebi_ontology
Lewis-Base
base de Lewis
donneur d'une paire d'electrons
electron donor
CHEBI:39144
Lewis base
Lewis base
IUPAC
Lewis-Base
ChEBI
base de Lewis
IUPAC
donneur d'une paire d'electrons
ChEBI
electron donor
ChEBI
CHEBI:29201
CHEBI:41605
Beilstein:3600898
CAS:3812-32-6
Gmelin:1559
PDBeChem:CO3
carbonate
trioxidocarbonate(2-)
chebi_ontology
CARBONATE ION
CO3(2-)
Karbonat
[CO3](2-)
CHEBI:41609
carbonate
Beilstein:3600898
Beilstein
CAS:3812-32-6
ChemIDplus
Gmelin:1559
Gmelin
carbonate
IUPAC
trioxidocarbonate(2-)
IUPAC
CARBONATE ION
PDBeChem
CO3(2-)
ChEBI
Karbonat
ChEBI
[CO3](2-)
IUPAC
A glucopyranose having D-configuration.
CAS:2280-44-6
GlyGen:G15021LG
GlyTouCan:G15021LG
Gmelin:83256
HMDB:HMDB0000122
KEGG:C00031
KEGG:D00009
KNApSAcK:C00001122
MetaCyc:D-Glucose
PMID:15987845
PMID:16901854
PMID:17336832
PMID:17439666
PMID:17928662
PMID:19913595
PMID:26812026
PMID:32619908
PMID:7524207
PMID:9140037
PMID:9501190
PMID:9506998
PMID:9545565
Reaxys:1281604
Wikipedia:Glucose
D-glucopyranose
chebi_ontology
D-Glc
D-Glcp
D-Glucose
D-glucose
Dextrose
Glc-OH
Glucose
Grape sugar
WURCS=2.0/1,1,0/[a2122h-1x_1-5]/1/
glucose
CHEBI:4167
D-glucopyranose
CAS:2280-44-6
ChemIDplus
Gmelin:83256
Gmelin
PMID:15987845
Europe PMC
PMID:16901854
Europe PMC
PMID:17336832
Europe PMC
PMID:17439666
Europe PMC
PMID:17928662
Europe PMC
PMID:19913595
Europe PMC
PMID:26812026
Europe PMC
PMID:32619908
Europe PMC
PMID:7524207
Europe PMC
PMID:9140037
Europe PMC
PMID:9501190
Europe PMC
PMID:9506998
Europe PMC
PMID:9545565
Europe PMC
Reaxys:1281604
Reaxys
D-glucopyranose
IUPAC
D-Glc
ChEBI
D-Glcp
ChEBI
D-Glucose
KEGG_COMPOUND
D-glucose
UniProt
Dextrose
KEGG_COMPOUND
Glc-OH
ChEBI
Glucose
KEGG_COMPOUND
Grape sugar
KEGG_COMPOUND
WURCS=2.0/1,1,0/[a2122h-1x_1-5]/1/
GlyTouCan
glucose
ChEBI
A hexose that has D-configuration at position 5.
KEGG:C00738
D-Hexose
D-hexopyranose
chebi_ontology
D-hexoses
a D-hexose
CHEBI:4194
D-hexose
D-Hexose
KEGG_COMPOUND
D-hexopyranose
IUPAC
D-hexoses
ChEBI
a D-hexose
UniProt
0
HO
17.00734
17.00274
*O[H]
CHEBI:24706
CHEBI:43171
PDBeChem:OH
HYDROXY GROUP
hydroxy
hydroxy group
chebi_ontology
-OH
hydroxyl
hydroxyl group
CHEBI:43176
hydroxy group
HYDROXY GROUP
PDBeChem
hydroxy
IUPAC
hydroxy group
UniProt
-OH
IUPAC
hydroxyl
ChEBI
hydroxyl group
ChEBI
CHEBI:29199
CHEBI:45693
Gmelin:2121
hydrogen(tetraoxidosulfate)(1-)
hydrogensulfate
hydrogensulfate(1-)
hydrogentetraoxosulfate(1-)
hydrogentetraoxosulfate(VI)
hydroxidotrioxidosulfate(1-)
chebi_ontology
HSO4(-)
HYDROGEN SULFATE
[SO3(OH)](-)
CHEBI:45696
hydrogensulfate
Gmelin:2121
Gmelin
hydrogen(tetraoxidosulfate)(1-)
IUPAC
hydrogensulfate
IUPAC
hydrogensulfate(1-)
IUPAC
hydrogentetraoxosulfate(1-)
IUPAC
hydrogentetraoxosulfate(VI)
IUPAC
hydroxidotrioxidosulfate(1-)
IUPAC
HSO4(-)
IUPAC
HYDROGEN SULFATE
PDBeChem
[SO3(OH)](-)
IUPAC
0
O
15.99940
15.99491
O=*
CHEBI:29353
CHEBI:44607
PDBeChem:O
OXO GROUP
oxo
chebi_ontology
=O
CHEBI:46629
oxo group
OXO GROUP
PDBeChem
oxo
IUPAC
=O
IUPAC
In general, a mineral is a chemical substance that is normally crystalline formed and has been formed as a result of geological processes. The term also includes metamict substances (naturally occurring, formerly crystalline substances whose crystallinity has been destroyed by ionising radiation) and can include naturally occurring amorphous substances that have never been crystalline ('mineraloids') such as georgite and calciouranoite as well as substances formed by the action of geological processes on bigenic compounds ('biogenic minerals').
mineral
Minerale
minerales
minerals
mineraux
mineral
A liquid that can dissolve other substances (solutes) without any change in their chemical composition.
Wikipedia:Solvent
chebi_ontology
Loesungsmittel
solvant
solvents
CHEBI:46787
solvent
Loesungsmittel
ChEBI
solvant
ChEBI
solvents
ChEBI
0
CHO2
45.01744
44.99765
*C(=O)O
CHEBI:23025
CHEBI:41420
PDBeChem:FMT
CARBOXY GROUP
carboxy
chebi_ontology
-C(O)OH
-CO2H
-COOH
carboxyl group
CHEBI:46883
carboxy group
CARBOXY GROUP
PDBeChem
carboxy
IUPAC
-C(O)OH
IUPAC
-CO2H
ChEBI
-COOH
IUPAC
carboxyl group
ChEBI
Any carboxylic ester where the carboxylic acid component is acetic acid.
CHEBI:13244
CHEBI:13799
CHEBI:22189
CHEBI:2406
KEGG:C01883
Wikipedia:Acetate#Esters
chebi_ontology
Acetic ester
Acetyl ester
acetate
acetate esters
acetates
acetyl esters
an acetyl ester
CHEBI:47622
acetate ester
Acetic ester
KEGG_COMPOUND
Acetyl ester
KEGG_COMPOUND
acetate
ChEBI
acetate esters
ChEBI
acetates
ChEBI
acetyl esters
ChEBI
an acetyl ester
UniProt
Any steroid substituted by at least one carboxy group.
chebi_ontology
steroid acids
CHEBI:47891
steroid acid
steroid acids
ChEBI
chebi_ontology
Schwefeloxide
oxides of sulfur
sulfur oxides
CHEBI:48154
sulfur oxide
Schwefeloxide
ChEBI
oxides of sulfur
ChEBI
sulfur oxides
ChEBI
A solvent that is composed of polar molecules. Polar solvents can dissolve ionic compounds or ionisable covalent compounds.
polar solvent
chebi_ontology
polar solvents
CHEBI:48354
polar solvent
polar solvent
IUPAC
polar solvents
ChEBI
A polar solvent that is capable of acting as a hydron (proton) donor.
protogenic solvent
chebi_ontology
CHEBI:48356
protic solvent
protogenic solvent
IUPAC
Any drug that acts on an alpha-adrenergic receptor.
chebi_ontology
alpha-adrenergic drugs
CHEBI:48539
alpha-adrenergic drug
alpha-adrenergic drugs
ChEBI
Substance which binds to cell receptors normally responding to naturally occurring substances and which produces a response of its own.
agonist
chebi_ontology
agonista
agoniste
agonists
CHEBI:48705
agonist
agonist
IUPAC
agonista
ChEBI
agoniste
ChEBI
agonists
ChEBI
0
Ar
InChI=1S/Ar
XKRFYHLGVUSROY-UHFFFAOYSA-N
39.94800
39.96238
[Ar]
CHEBI:33311
CAS:7440-37-1
WebElements:Ar
argon
chebi_ontology
18Ar
Ar
argon
CHEBI:49475
argon atom
CAS:7440-37-1
ChemIDplus
argon
IUPAC
18Ar
IUPAC
Ar
IUPAC
argon
ChEBI
A metallic element predicted as eka-aluminium by Mendeleev in 1870 and discovered by Paul-Emile Lecoq de Boisbaudran in 1875. Named in honour of France (Latin Gallia) and perhaps also from the Latin gallus cock, a translation of Lecoq.
0
Ga
InChI=1S/Ga
GYHNNYVSQQEPJS-UHFFFAOYSA-N
69.72300
68.92557
[Ga]
CHEBI:33326
CHEBI:49630
CAS:7440-55-3
WebElements:Ga
gallium
chebi_ontology
31Ga
Ga
galio
gallium
CHEBI:49631
gallium atom
CAS:7440-55-3
ChemIDplus
CAS:7440-55-3
NIST Chemistry WebBook
gallium
IUPAC
31Ga
IUPAC
Ga
IUPAC
galio
ChEBI
gallium
ChEBI
0
H
InChI=1S/H
YZCKVEUIGOORGS-UHFFFAOYSA-N
1.00794
1.00783
[H]
CHEBI:24634
CHEBI:49636
WebElements:H
hydrogen
chebi_ontology
1H
H
Wasserstoff
hidrogeno
hydrogen
hydrogene
CHEBI:49637
hydrogen atom
hydrogen
IUPAC
1H
IUPAC
H
IUPAC
Wasserstoff
ChEBI
hidrogeno
ChEBI
hydrogen
ChEBI
hydrogene
ChEBI
0
Ho
InChI=1S/Ho
KJZYNXUDTRRSPN-UHFFFAOYSA-N
164.93032
164.93033
[Ho]
CHEBI:33378
CHEBI:49647
CAS:7440-60-0
Gmelin:16291
WebElements:Ho
holmium
chebi_ontology
67Ho
Ho
holmio
holmium
CHEBI:49648
holmium atom
CAS:7440-60-0
ChemIDplus
CAS:7440-60-0
NIST Chemistry WebBook
Gmelin:16291
Gmelin
holmium
IUPAC
67Ho
IUPAC
Ho
IUPAC
holmio
ChEBI
holmium
ChEBI
0
Ir
InChI=1S/Ir
GKOZUEZYRPOHIO-UHFFFAOYSA-N
192.21700
192.96292
[Ir]
CHEBI:33360
CHEBI:49665
CAS:7439-88-5
WebElements:Ir
iridium
chebi_ontology
77Ir
Ir
iridio
iridium
CHEBI:49666
iridium atom
CAS:7439-88-5
ChemIDplus
CAS:7439-88-5
NIST Chemistry WebBook
iridium
IUPAC
77Ir
IUPAC
Ir
IUPAC
iridio
ChEBI
iridium
ChEBI
0
Kr
InChI=1S/Kr
DNNSSWSSYDEUBZ-UHFFFAOYSA-N
83.80000
83.91150
[Kr]
CHEBI:33312
CAS:7439-90-9
WebElements:Kr
krypton
chebi_ontology
36Kr
Kr
cripton
kripton
krypton
CHEBI:49696
krypton atom
CAS:7439-90-9
ChemIDplus
CAS:7439-90-9
NIST Chemistry WebBook
krypton
IUPAC
36Kr
IUPAC
Kr
IUPAC
cripton
ChEBI
kripton
ChEBI
krypton
ChEBI
0
Pr
InChI=1S/Pr
PUDIUYLPXJFUGB-UHFFFAOYSA-N
140.90765
140.90766
[Pr]
CHEBI:33370
CHEBI:49827
CAS:7440-10-0
WebElements:Pr
praseodymium
chebi_ontology
59Pr
Pr
Praseodym
praseodimio
praseodyme
praseodymium
CHEBI:49828
praseodymium atom
CAS:7440-10-0
ChemIDplus
CAS:7440-10-0
NIST Chemistry WebBook
praseodymium
IUPAC
59Pr
IUPAC
Pr
IUPAC
Praseodym
ChEBI
praseodimio
ChEBI
praseodyme
ChEBI
praseodymium
ChEBI
0
Re
InChI=1S/Re
WUAPFZMCVAUBPE-UHFFFAOYSA-N
186.20700
186.95575
[Re]
CHEBI:33354
CHEBI:49879
CAS:7440-15-5
WebElements:Re
rhenium
chebi_ontology
75Re
Re
Rhenium
renio
rhenium
CHEBI:49882
rhenium atom
CAS:7440-15-5
ChemIDplus
CAS:7440-15-5
NIST Chemistry WebBook
rhenium
IUPAC
75Re
IUPAC
Re
ChEBI
Rhenium
ChEBI
renio
ChEBI
rhenium
ChEBI
0
Xe
InChI=1S/Xe
FHNFHKCVQCLJFQ-UHFFFAOYSA-N
131.29000
131.90416
[Xe]
CHEBI:32305
CAS:7440-63-3
Gmelin:16318
KEGG:C13373
WebElements:Xe
xenon
chebi_ontology
54Xe
Xe
Xenon
xenon
CHEBI:49957
xenon atom
CAS:7440-63-3
ChemIDplus
CAS:7440-63-3
KEGG COMPOUND
CAS:7440-63-3
NIST Chemistry WebBook
Gmelin:16318
Gmelin
xenon
IUPAC
54Xe
IUPAC
Xe
IUPAC
Xenon
ChEBI
Xenon
KEGG_COMPOUND
xenon
ChEBI
A compound formally derived from ammonia by replacing one, two or three hydrogen atoms by organyl groups.
chebi_ontology
organic amino compounds
CHEBI:50047
organic amino compound
organic amino compounds
ChEBI
A synthetic radioactive isotope of chromium having a half-life of 27.7 days and decaying by electron capture with emission of gamma rays (0.32 MeV); it is used to label red blood cells for measurement of mass or volume, survival time, and sequestration studies, for the diagnosis of gastrointestinal bleeding, and to label platelets to study their survival.
0
[51Cr]
InChI=1S/Cr/i1-1
VYZAMTAEIAYCRO-BJUDXGSMSA-N
50.945
50.94477
[51Cr]
CAS:14392-02-0
chromium-51
chebi_ontology
(51)24Cr
(51)Cr
51Cr
Chromium, isotope of mass 51
CHEBI:50076
chromium-51
CAS:14392-02-0
ChemIDplus
chromium-51
IUPAC
(51)24Cr
IUPAC
(51)Cr
IUPAC
51Cr
ChemIDplus
Chromium, isotope of mass 51
ChemIDplus
Any anion formed by loss of a proton from a steroid acid.
chebi_ontology
steroid acid anions
CHEBI:50160
steroid acid anion
steroid acid anions
ChEBI
chebi_ontology
canonical nucleotide residues
CHEBI:50297
canonical nucleotide residue
canonical nucleotide residues
ChEBI
chebi_ontology
canonical ribonucleotide residues
CHEBI:50299
canonical ribonucleotide residue
canonical ribonucleotide residues
ChEBI
chebi_ontology
CHEBI:50312
onium compound
Mononuclear cations derived by addition of a hydron to a mononuclear parent hydride of the pnictogen, chalcogen and halogen families.
onium cations
chebi_ontology
onium cations
onium ion
onium ions
CHEBI:50313
onium cation
onium cations
IUPAC
onium cations
ChEBI
onium ion
ChEBI
onium ions
ChEBI
chebi_ontology
nucleotide residues
CHEBI:50319
nucleotide residue
nucleotide residues
ChEBI
chebi_ontology
nucleoside residues
CHEBI:50320
nucleoside residue
nucleoside residues
ChEBI
Drug used to cause constriction of the blood vessels.
chebi_ontology
CHEBI:50514
vasoconstrictor agent
Any molecular entity that contains carbon.
CHEBI:25700
CHEBI:33244
chebi_ontology
organic compounds
organic entity
organic molecular entities
CHEBI:50860
organic molecular entity
organic compounds
ChEBI
organic entity
ChEBI
organic molecular entities
ChEBI
A role is particular behaviour which a material entity may exhibit.
chebi_ontology
CHEBI:50906
role
A poison that interferes with the functions of the nervous system.
CHEBI:50911
Wikipedia:Neurotoxin
chebi_ontology
agente neurotoxico
nerve poison
nerve poisons
neurotoxic agent
neurotoxic agents
neurotoxicant
neurotoxins
CHEBI:50910
neurotoxin
agente neurotoxico
ChEBI
nerve poison
ChEBI
nerve poisons
ChEBI
neurotoxic agent
ChEBI
neurotoxic agents
ChEBI
neurotoxicant
ChEBI
neurotoxins
ChEBI
A compound formally derived from ammonia by replacing one hydrogen atom by an organyl group.
chebi_ontology
primary amino compounds
CHEBI:50994
primary amino compound
primary amino compounds
ChEBI
A role played by the molecular entity or part thereof within a chemical context.
chebi_ontology
CHEBI:51086
chemical role
CHEBI:25556
CHEBI:7594
KEGG:C06061
chebi_ontology
Nitrogenous compounds
nitrogen compounds
nitrogen molecular entities
CHEBI:51143
nitrogen molecular entity
Nitrogenous compounds
KEGG_COMPOUND
nitrogen compounds
ChEBI
nitrogen molecular entities
ChEBI
An organic molecule that is electrically neutral carrying a positive and a negative charge in one of its major canonical descriptions. In most dipolar compounds the charges are delocalized; however the term is also applied to species where this is not the case.
chebi_ontology
dipolar compounds
CHEBI:51151
dipolar compound
dipolar compounds
ChEBI
Any organic substituent group, regardless of functional type, having two free valences at carbon atom(s).
chebi_ontology
organodiyl groups
CHEBI:51422
organodiyl group
organodiyl groups
ChEBI
chebi_ontology
CHEBI:51446
organic divalent group
chebi_ontology
CHEBI:51447
organic univalent group
chebi_ontology
organic polycyclic compounds
CHEBI:51958
organic polycyclic compound
organic polycyclic compounds
ChEBI
A biological role played by the molecular entity or part thereof within a biochemical context.
chebi_ontology
CHEBI:52206
biochemical role
A role played by the molecular entity or part thereof which causes the development of a pathological process.
chebi_ontology
etiopathogenetic agent
etiopathogenetic role
CHEBI:52209
aetiopathogenetic role
etiopathogenetic agent
ChEBI
etiopathogenetic role
ChEBI
A biological role which describes how a drug interacts within a biological system and how the interactions affect its medicinal properties.
chebi_ontology
CHEBI:52210
pharmacological role
chebi_ontology
CHEBI:52211
physiological role
Any substance introduced into a living organism with therapeutic or diagnostic purpose.
CHEBI:33293
CHEBI:33294
chebi_ontology
farmaco
medicament
pharmaceuticals
CHEBI:52217
pharmaceutical
farmaco
ChEBI
medicament
ChEBI
pharmaceuticals
ChEBI
The stable isotope of tin with relative atomic mass 118.903311, 8.59 atom percent natural abundance and nuclear spin (1)/2.
0
[119Sn]
InChI=1S/Sn/i1+0
ATJFFYVFTNAWJD-IGMARMGPSA-N
118.903
118.90331
[119Sn]
tin-119
chebi_ontology
(119)50Sn
(119)Sn
tin-119
CHEBI:52230
tin-119 atom
tin-119
IUPAC
(119)50Sn
IUPAC
(119)Sn
IUPAC
tin-119
ChEBI
The stable isotope of tin with relative atomic mass 119.902199 and 32.58 atom percent natural abundance.
0
[120Sn]
InChI=1S/Sn/i1+1
ATJFFYVFTNAWJD-OUBTZVSYSA-N
119.902
119.90220
[120Sn]
tin-120
chebi_ontology
(120)50Sn
(120)Sn
tin-120
CHEBI:52231
tin-120 atom
tin-120
IUPAC
(120)50Sn
IUPAC
(120)Sn
IUPAC
tin-120
ChEBI
The stable isotope of tin with relative atomic mass 117.901609 and 24.22 atom percent natural abundance.
0
[118Sn]
InChI=1S/Sn/i1-1
ATJFFYVFTNAWJD-BJUDXGSMSA-N
117.902
117.90161
[118Sn]
tin-118
chebi_ontology
(118)50Sn
(118)Sn
tin-118
CHEBI:52232
tin-118 atom
tin-118
IUPAC
(118)50Sn
IUPAC
(118)Sn
IUPAC
tin-118
ChEBI
The stable isotope of tin with relative atomic mass 115.901747 and 14.54 atom percent natural abundance.
0
[116Sn]
InChI=1S/Sn/i1-3
ATJFFYVFTNAWJD-OIOBTWANSA-N
115.902
115.90174
[116Sn]
tin-116
chebi_ontology
(116)50Sn
(116)Sn
tin-116
CHEBI:52233
tin-116 atom
tin-116
IUPAC
(116)50Sn
IUPAC
(116)Sn
IUPAC
tin-116
ChEBI
The stable isotope of tin with relative atomic mass 116.902956, 7.68 atom percent natural abundance and nuclear spin (1)/2.
0
[117Sn]
InChI=1S/Sn/i1-2
ATJFFYVFTNAWJD-YPZZEJLDSA-N
116.903
116.90295
[117Sn]
tin-117
chebi_ontology
(117)50Sn
(117)Sn
tin-117
CHEBI:52234
tin-117 atom
tin-117
IUPAC
(117)50Sn
IUPAC
(117)Sn
IUPAC
tin-117
ChEBI
The stable isotope of tin with relative atomic mass 114.903348, 0.34 atom percent natural abundance and nuclear spin (1)/2.
0
[115Sn]
InChI=1S/Sn/i1-4
ATJFFYVFTNAWJD-AHCXROLUSA-N
114.903
114.90334
[115Sn]
tin-115
chebi_ontology
(115)50Sn
(115)Sn
tin-115
CHEBI:52235
tin-115 atom
tin-115
IUPAC
(115)50Sn
IUPAC
(115)Sn
IUPAC
tin-115
ChEBI
The stable isotope of boron with relative atomic mass 11.009306, 80.1 atom percent natural abundance and nuclear spin 3/2.
0
[11B]
InChI=1S/B/i1+0
ZOXJGFHDIHLPTG-IGMARMGPSA-N
11.009
11.00930
[11B]
boron-11
chebi_ontology
(11)5B
(11)B
CHEBI:52451
boron-11 atom
boron-11
IUPAC
(11)5B
IUPAC
(11)B
IUPAC
The stable isotope of tellurium with relative atomic mass 124.904425, 71.4 atom percent natural abundance and nuclear spin 1/2.
0
[125Te]
InChI=1S/Te/i1-3
PORWMNRCUJJQNO-OIOBTWANSA-N
124.904
124.90443
[125Te]
tellurium-125
chebi_ontology
(125)52Te
(125)Te
tellurium-125
CHEBI:52452
tellurium-125 atom
tellurium-125
IUPAC
(125)52Te
IUPAC
(125)Te
IUPAC
tellurium-125
ChEBI
The stable isotope of xenon with relative atomic mass 128.904780, 26.4 atom percent natural abundance and nuclear spin 1/2.
0
[129Xe]
InChI=1S/Xe/i1-2
FHNFHKCVQCLJFQ-YPZZEJLDSA-N
128.905
128.90478
[129Xe]
xenon-129
chebi_ontology
(129)54Xe
(129)Xe
xenon-129
CHEBI:52453
xenon-129 atom
xenon-129
IUPAC
(129)54Xe
IUPAC
(129)Xe
IUPAC
xenon-129
ChEBI
A stable isotope of selenium with relative atomic mass 76.919915, 7.60 atom percent natural abundance and nuclear spin 1/2.
0
[77Se]
InChI=1S/Se/i1-2
BUGBHKTXTAQXES-YPZZEJLDSA-N
76.920
76.91991
[77Se]
Chemspider:9507361
PMID:16158304
PMID:23159557
PMID:25848959
PMID:25923042
PMID:27129100
PMID:30828921
PMID:32453871
PMID:34153173
((77)Se)selenium
chebi_ontology
(77)34Se
(77)Se
Se-77
selenium, isotope of mass 77
selenium-(77)Se
selenium-77
CHEBI:52457
selenium-77 atom
PMID:16158304
Europe PMC
PMID:23159557
Europe PMC
PMID:25848959
Europe PMC
PMID:25923042
Europe PMC
PMID:27129100
Europe PMC
PMID:30828921
Europe PMC
PMID:32453871
Europe PMC
PMID:34153173
Europe PMC
((77)Se)selenium
IUPAC
(77)34Se
IUPAC
(77)Se
IUPAC
Se-77
ChEBI
selenium, isotope of mass 77
ChEBI
selenium-(77)Se
ChEBI
selenium-77
ChEBI
The stable isotope of lithium with relative atomic mass 7.016004, 92.5 atom percent natural abundance and nuclear spin 3/2.
0
[7Li]
InChI=1S/Li/i1+0
WHXSMMKQMYFTQS-IGMARMGPSA-N
7.016
7.01600
[7Li]
lithium-7
chebi_ontology
(7)3Li
(7)Li
lithium-7
CHEBI:52458
lithium-7 atom
lithium-7
IUPAC
(7)3Li
IUPAC
(7)Li
IUPAC
lithium-7
ChEBI
The stable isotope of rubidium with relative atomic mass 86.909184, 27.9 atom percent natural abundance and nuclear spin 3/2.
0
[87Rb]
InChI=1S/Rb/i1+2
IGLNJRXAVVLDKE-NJFSPNSNSA-N
86.909
86.90918
[87Rb]
rubidium-87
chebi_ontology
(87)37Rb
(87)Rb
rubidium-87
CHEBI:52459
rubidium-87 atom
rubidium-87
IUPAC
(87)37Rb
IUPAC
(87)Rb
IUPAC
rubidium-87
ChEBI
The stable isotope of niobium with relative atomic mass 92.906378, 100 atom percent natural abundance and nuclear spin 9/2.
0
[93Nb]
InChI=1S/Nb/i1+0
GUCVJGMIXFAOAE-IGMARMGPSA-N
92.906
92.90637
[93Nb]
niobium-93
chebi_ontology
(93)41Nb
(93)Nb
niobium-93
CHEBI:52460
niobium-93 atom
niobium-93
IUPAC
(93)41Nb
IUPAC
(93)Nb
IUPAC
niobium-93
ChEBI
The stable isotope of niobium with relative atomic mass 182.950225, 14.3 atom percent natural abundance and nuclear spin 1/2.
0
[183W]
InChI=1S/W/i1-1
WFKWXMTUELFFGS-BJUDXGSMSA-N
182.950
182.95022
[183W]
tungsten-183
chebi_ontology
(183)74W
(183)W
CHEBI:52462
tungsten-183
tungsten-183
IUPAC
(183)74W
IUPAC
(183)W
IUPAC
The stable isotope of cadmium with relative atomic mass 110.904182, 12.8 atom percent natural abundance and nuclear spin 1/2.
0
[111Cd]
InChI=1S/Cd/i1-1
BDOSMKKIYDKNTQ-BJUDXGSMSA-N
110.904
110.90418
[111Cd]
cadmium-111
chebi_ontology
(111)48Cd
(111)Cd
CHEBI:52619
cadmium-111
cadmium-111
IUPAC
(111)48Cd
IUPAC
(111)Cd
IUPAC
The isotope of cadmium with relative atomic mass 112.904401, 12.2 atom percent natural abundance and nuclear spin 1/2.
0
[113Cd]
InChI=1S/Cd/i1+1
BDOSMKKIYDKNTQ-OUBTZVSYSA-N
112.904
112.90441
[113Cd]
cadmium-113
chebi_ontology
(113)48Cd
(113)Cd
CHEBI:52620
cadmium-113
cadmium-113
IUPAC
(113)48Cd
IUPAC
(113)Cd
IUPAC
The stable isotope of lithium with relative atomic mass 6.015122, 7.5 atom percent natural abundance and nuclear spin 1.
0
[6Li]
InChI=1S/Li/i1-1
WHXSMMKQMYFTQS-BJUDXGSMSA-N
6.015
6.01512
[6Li]
lithium-6
chebi_ontology
(6)3Li
(6)Li
lithium-6
CHEBI:52621
lithium-6 atom
lithium-6
IUPAC
(6)3Li
IUPAC
(6)Li
IUPAC
lithium-6
ChEBI
The stable isotope of yttrium with relative atomic mass 88.905848, 100 atom percent natural abundance and nuclear spin 1/2.
0
[89Y]
InChI=1S/Y/i1+0
VWQVUPCCIRVNHF-IGMARMGPSA-N
88.906
88.90584
[89Y]
yttrium-89
chebi_ontology
(89)39Y
(89)Y
yttrium-89
CHEBI:52622
yttrium-89 atom
yttrium-89
IUPAC
(89)39Y
IUPAC
(89)Y
IUPAC
yttrium-89
ChEBI
The stable isotope of iron with relative atomic mass 56.935399, 2.1 atom percent natural abundance and nuclear spin 1/2.
0
[57Fe]
InChI=1S/Fe/i1+1
XEEYBQQBJWHFJM-OUBTZVSYSA-N
56.935
56.93539
[57Fe]
iron-57
chebi_ontology
(57)26Fe
(57)Fe
CHEBI:52623
iron-57 atom
iron-57
IUPAC
(57)26Fe
IUPAC
(57)Fe
IUPAC
The stable isotope of antimony with relative atomic mass 120.903818, 57.2 atom percent natural abundance and nuclear spin 5/2.
0
[121Sb]
InChI=1S/Sb/i1-1
WATWJIUSRGPENY-BJUDXGSMSA-N
120.904
120.90381
[121Sb]
antimony-121
chebi_ontology
(121)51Sb
(121)Sb
antimony-121
CHEBI:52624
antimony-121 atom
antimony-121
IUPAC
(121)51Sb
IUPAC
(121)Sb
IUPAC
antimony-121
ChEBI
inorganic hydroxy compound
The stable isotope of antimony with relative atomic mass 122.904216, 42.8 atom percent natural abundance and nuclear spin 7/2.
0
[123Sb]
InChI=1S/Sb/i1+1
WATWJIUSRGPENY-OUBTZVSYSA-N
122.904
122.90421
[123Sb]
antimony-123
chebi_ontology
(123)51Sb
(123)Sb
antimony-123
CHEBI:52626
antimony-123 atom
antimony-123
IUPAC
(123)51Sb
IUPAC
(123)Sb
IUPAC
antimony-123
ChEBI
The stable isotope of lanthanum with relative atomic mass 138.906348, 99.9 atom percent natural abundance and nuclear spin 7/2.
0
[139La]
InChI=1S/La/i1+0
FZLIPJUXYLNCLC-IGMARMGPSA-N
138.906
138.90636
[139La]
lanthanum-139
chebi_ontology
(139)57La
(139)La
lanthanum-139
CHEBI:52627
lanthanum-139 atom
lanthanum-139
IUPAC
(139)57La
IUPAC
(139)La
IUPAC
lanthanum-139
ChEBI
The stable isotope of iodine with relative atomic mass 126.904468, 100 atom percent natural abundance and nuclear spin 5/2.
0
[127I]
InChI=1S/I/i1+0
ZCYVEMRRCGMTRW-IGMARMGPSA-N
126.904
126.90447
[127I]
iodine-127
chebi_ontology
(127)53I
(127)I
iodine-127
CHEBI:52631
iodine-127 atom
iodine-127
IUPAC
(127)53I
IUPAC
(127)I
IUPAC
iodine-127
ChEBI
The stable isotope of potassium with relative atomic mass 38.963707, 93.3 atom percent natural abundance and nuclear spin 3/2.
0
[39K]
InChI=1S/K/i1+0
ZLMJMSJWJFRBEC-IGMARMGPSA-N
38.964
38.96371
[39K]
potassium-39
chebi_ontology
(39)19K
(39)K
potassium-39
CHEBI:52632
potassium-39 atom
potassium-39
IUPAC
(39)19K
IUPAC
(39)K
IUPAC
potassium-39
ChEBI
The stable isotope of molybdenum with relative atomic mass 94.905842, 15.9 atom percent natural abundance and nuclear spin 5/2.
0
[95Mo]
InChI=1S/Mo/i1-1
ZOKXTWBITQBERF-BJUDXGSMSA-N
94.906
94.90584
[95Mo]
molybdenum-95
chebi_ontology
(95)42Mo
(95)Mo
CHEBI:52633
molybdenum-95
molybdenum-95
IUPAC
(95)42Mo
IUPAC
(95)Mo
IUPAC
The stable isotope of sodium with relative atomic mass 22.989770, 100 atom percent natural abundance and nuclear spin 3/2.
0
[23Na]
InChI=1S/Na/i1+0
KEAYESYHFKHZAL-IGMARMGPSA-N
22.990
22.98977
[23Na]
sodium-23
chebi_ontology
(23)11Na
(23)Na
sodium-23
CHEBI:52634
sodium-23 atom
sodium-23
IUPAC
(23)11Na
IUPAC
(23)Na
IUPAC
sodium-23
ChEBI
The stable isotope of scandium with relative atomic mass 44.955910, 100 atom percent natural abundance and nuclear spin 7/2.
0
[45Sc]
InChI=1S/Sc/i1+0
SIXSYDAISGFNSX-IGMARMGPSA-N
44.956
44.95591
[45Sc]
scandium-45
chebi_ontology
(45)21Sc
(45)Sc
scandium-45
CHEBI:52635
scandium-45 atom
scandium-45
IUPAC
(45)21Sc
IUPAC
(45)Sc
IUPAC
scandium-45
ChEBI
The isotope of iodine with relative atomic mass 128.904988, and nuclear spin 7/2.
0
[129I]
InChI=1S/I/i1+2
ZCYVEMRRCGMTRW-NJFSPNSNSA-N
128.905
128.90499
[129I]
iodine-129
chebi_ontology
(129)53I
(129)I
iodine-129
CHEBI:52636
iodine-129 atom
iodine-129
IUPAC
(129)53I
IUPAC
(129)I
IUPAC
iodine-129
ChEBI
The stable isotope of europium with relative atomic mass 150.919846, 47.8 atom percent natural abundance and nuclear spin 5/2.
0
[151Eu]
InChI=1S/Eu/i1-1
OGPBJKLSAFTDLK-BJUDXGSMSA-N
150.920
150.91986
[151Eu]
europium-151
chebi_ontology
(151)63Eu
(151)Eu
europium-151
CHEBI:52637
europium-151 atom
europium-151
IUPAC
(151)63Eu
IUPAC
(151)Eu
IUPAC
europium-151
ChEBI
The stable isotope of bromine with relative atomic mass 78.918338, 50.69 atom percent natural abundance and nuclear spin 3/2.
0
[79Br]
InChI=1S/Br/i1-1
WKBOTKDWSSQWDR-BJUDXGSMSA-N
78.918
78.91834
[79Br]
chebi_ontology
(79)35Br
(79)Br
bromine-79
CHEBI:52743
bromine-79 atom
(79)35Br
IUPAC
(79)Br
IUPAC
bromine-79
ChEBI
The stable isotope of germanium with relative atomic mass 72.923459, 7.73 atom percent natural abundance and nuclear spin 9/2.
0
[73Ge]
InChI=1S/Ge/i1+0
GNPVGFCGXDBREM-IGMARMGPSA-N
72.923
72.92346
[73Ge]
chebi_ontology
(73)32Ge
(73)Ge
germanium-73
CHEBI:52758
germanium-73 atom
(73)32Ge
IUPAC
(73)Ge
IUPAC
germanium-73
ChEBI
The stable isotope of magnesium with relative atomic mass 24.985837, 10.0 atom percent natural abundance and nuclear spin 5/2.
0
[25Mg]
InChI=1S/Mg/i1+1
FYYHWMGAXLPEAU-OUBTZVSYSA-N
24.986
24.98584
[25Mg]
chebi_ontology
(25)12Mg
(25)Mg
magnesium-25
CHEBI:52763
magnesium-25 atom
(25)12Mg
IUPAC
(25)Mg
IUPAC
magnesium-25
ChEBI
An organic group that consists of a closed ring. It may be a substituent or a skeleton.
chebi_ontology
cyclic organic groups
CHEBI:52845
cyclic organic group
cyclic organic groups
ChEBI
The biological role played by a material entity when bound by a receptor of the adaptive immune system. Specific site on an antigen to which an antibody binds.
chebi_ontology
antigenic determinant
epitope function
epitope role
CHEBI:53000
epitope
antigenic determinant
ChEBI
epitope function
ChEBI
epitope role
ChEBI
A polymer carrying multiple negative charges.
chebi_ontology
polyanion
polyanions
CHEBI:53309
polyanionic macromolecule
polyanion
ChEBI
polyanions
SUBMITTER
A macromolecule containing ionic groups.
chebi_ontology
ionic polymer
polyionic macromolecule
CHEBI:53368
ionic macromolecule
ionic polymer
ChEBI
polyionic macromolecule
ChEBI
A 29-amino acid peptide hormone consisting of His, Ser, Gln, Gly, Thr, Phe, Thr, Ser, Asp, Tyr, Ser, Lys, Tyr, Leu, Asp, Ser, Arg, Arg, Ala, Gln, Asp, Phe, Val, Gln, Trp, Leu, Met, Asn and Thr residues joined in sequence.
CAS:16941-32-5
CAS:9007-92-5
DrugBank:DB00040
Drug_Central:2994
KEGG:C01501
KEGG:D00116
PMID:21940356
PMID:22014161
PMID:22154917
PMID:22166985
PMID:22167521
PMID:22214853
PMID:22227186
PMID:22286080
PMID:22294753
PMID:22318544
PMID:22334714
PMID:22399501
PMID:22438981
PMID:22454291
Reaxys:13191924
Wikipedia:Glucagon
Glucagon
L-histidyl-L-seryl-L-glutaminylglycyl-L-threonyl-L-phenylalanyl-L-threonyl-L-seryl-L-alpha-aspartyl-L-tyrosyl-L-seryl-L-lysyl-L-tyrosyl-L-leucyl-L-alpha-aspartyl-L-seryl-L-arginyl-L-arginyl-L-alanyl-L-glutaminyl-L-alpha-aspartyl-L-phenylalanyl-L-valyl-L-glutaminyl-L-tryptophyl-L-leucyl-L-methionyl-L-asparaginyl-L-threonine
chebi_ontology
Glucagone
HSQGTFTSDYSKYLDSRRAQDFVQWLMNT
His-Ser-Gln-Gly-Thr-Phe-Thr-Ser-Asp-Tyr-Ser-Lys-Tyr-Leu-Asp-Ser-Arg-Arg-Ala-Gln-Asp-Phe-Val-Gln-Trp-Leu-Met-Asn-Thr
His-ser-glu(nh2)-gly-thr-phe-thr-ser-asp-tyr-ser-lys-tyr-leu-asp-ser-arg-arg-ala-glu(NH2)-asp-phe-val-glu(NH2)-trp-leu-met-asp(NH2)-thr
glucagon
glucagonum
CHEBI:5391
glucagon
CAS:16941-32-5
ChemIDplus
CAS:9007-92-5
ChemIDplus
CAS:9007-92-5
KEGG COMPOUND
Drug_Central:2994
DrugCentral
PMID:21940356
Europe PMC
PMID:22014161
Europe PMC
PMID:22154917
Europe PMC
PMID:22166985
Europe PMC
PMID:22167521
Europe PMC
PMID:22214853
Europe PMC
PMID:22227186
Europe PMC
PMID:22286080
Europe PMC
PMID:22294753
Europe PMC
PMID:22318544
Europe PMC
PMID:22334714
Europe PMC
PMID:22399501
Europe PMC
PMID:22438981
Europe PMC
PMID:22454291
Europe PMC
Reaxys:13191924
Reaxys
Glucagon
KEGG_COMPOUND
L-histidyl-L-seryl-L-glutaminylglycyl-L-threonyl-L-phenylalanyl-L-threonyl-L-seryl-L-alpha-aspartyl-L-tyrosyl-L-seryl-L-lysyl-L-tyrosyl-L-leucyl-L-alpha-aspartyl-L-seryl-L-arginyl-L-arginyl-L-alanyl-L-glutaminyl-L-alpha-aspartyl-L-phenylalanyl-L-valyl-L-glutaminyl-L-tryptophyl-L-leucyl-L-methionyl-L-asparaginyl-L-threonine
IUPAC
Glucagone
ChemIDplus
HSQGTFTSDYSKYLDSRRAQDFVQWLMNT
ChEBI
His-Ser-Gln-Gly-Thr-Phe-Thr-Ser-Asp-Tyr-Ser-Lys-Tyr-Leu-Asp-Ser-Arg-Arg-Ala-Gln-Asp-Phe-Val-Gln-Trp-Leu-Met-Asn-Thr
ChEBI
His-ser-glu(nh2)-gly-thr-phe-thr-ser-asp-tyr-ser-lys-tyr-leu-asp-ser-arg-arg-ala-glu(NH2)-asp-phe-val-glu(NH2)-trp-leu-met-asp(NH2)-thr
ChemIDplus
glucagon
ChemIDplus
glucagonum
ChemIDplus
Any metal that is characterized by its rather high atomic mass and density. Although typically occurring in low concentrations, they can be found all throughout the Earth's crust (Commonly, a density of at least 5 g cm(3) is used to define a heavy metal and to differentiate it from other, ''light'' metals).
Wikipedia:Heavy_metals
chebi_ontology
heavy metals
CHEBI:5631
heavy metal
heavy metals
ChEBI
A cyclic compound having as ring members atoms of at least two different elements.
Heterocyclic compound
chebi_ontology
compuesto heterociclico
compuestos heterociclicos
heterocycle
heterocyclic compounds
CHEBI:5686
heterocyclic compound
Heterocyclic compound
KEGG_COMPOUND
compuesto heterociclico
IUPAC
compuestos heterociclicos
IUPAC
heterocycle
ChEBI
heterocyclic compounds
ChEBI
An ammonium ion that is the conjugate acid of tryptamine arising from protonation of the primary amino group; major species at pH 7.3.
Gmelin:533978
2-(1H-indol-3-yl)ethanaminium
chebi_ontology
tryptamine
tryptaminium cation
tryptaminium(1+)
CHEBI:57887
tryptaminium
Gmelin:533978
Gmelin
2-(1H-indol-3-yl)ethanaminium
IUPAC
tryptamine
UniProt
tryptaminium cation
ChEBI
tryptaminium(1+)
ChEBI
A dicarboxylic acid dianion obtained by deprotonation of the two carboxy groups of bilirubin; major species at pH 7.3.
Beilstein:4083310
chebi_ontology
(4Z,15Z)-bilirubin IXalpha
2,7,13,17-tetramethyl-1,19-dioxo-3,18-divinyl-1,10,19,22,23,24-hexahydro-21H-biline-8,12-dipropanoate
bilirubin dianion
CHEBI:57977
bilirubin(2-)
Beilstein:4083310
Beilstein
(4Z,15Z)-bilirubin IXalpha
UniProt
2,7,13,17-tetramethyl-1,19-dioxo-3,18-divinyl-1,10,19,22,23,24-hexahydro-21H-biline-8,12-dipropanoate
ChEBI
bilirubin dianion
ChEBI
An amino-acid residue protonated on nitrogen.
chebi_ontology
amino acid cation residue
amino acid cation residues
amino-acid cation residue
amino-acid cation residues
cationic amino acid residue
cationic amino acid residues
cationic amino-acid residues
CHEBI:58942
cationic amino-acid residue
amino acid cation residue
ChEBI
amino acid cation residues
ChEBI
amino-acid cation residue
ChEBI
amino-acid cation residues
ChEBI
cationic amino acid residue
ChEBI
cationic amino acid residues
ChEBI
cationic amino-acid residues
ChEBI
An organic anion of general formula RS(=O)2O(-) where R is an organyl group.
chebi_ontology
organosulfate oxoanions
CHEBI:58958
organosulfate oxoanion
organosulfate oxoanions
ChEBI
An organic anion arising from deprotonation of a acyclic tetrapyrrole compound.
chebi_ontology
acyclic tetrapyrrole anion
acyclic tetrapyrrole anions
linear tetrapyrrole anions
CHEBI:59252
linear tetrapyrrole anion
acyclic tetrapyrrole anion
ChEBI
acyclic tetrapyrrole anions
ChEBI
linear tetrapyrrole anions
ChEBI
A reagent that forms a bond to its reaction partner (the electrophile) by donating both bonding electrons.
chebi_ontology
nucleophile
nucleophiles
nucleophilic reagents
CHEBI:59740
nucleophilic reagent
nucleophile
ChEBI
nucleophiles
ChEBI
nucleophilic reagents
ChEBI
A chemical substance is a portion of matter of constant composition, composed of molecular entities of the same type or of different types.
chebi_ontology
Chemische Substanz
CHEBI:59999
chemical substance
Chemische Substanz
ChEBI
A mixture is a chemical substance composed of multiple molecules, at least two of which are of a different kind.
chebi_ontology
Mischung
CHEBI:60004
mixture
Mischung
ChEBI
A polymer is a mixture, which is composed of macromolecules of different kinds and which may be differentiated by composition, length, degree of branching etc..
Wikipedia:Polymer
Polymer
chebi_ontology
Kunststoff
CHEBI:60027
polymer
Polymer
ChEBI
Kunststoff
ChEBI
An ionic polymer is a polymer, composed of ionic macromolecules.
chebi_ontology
polyionic polymer
CHEBI:60164
ionic polymer
polyionic polymer
ChEBI
An atom or small molecule with a positive charge that does not contain carbon in covalent linkage, with a valency of one.
chebi_ontology
a monovalent cation
CHEBI:60242
monovalent inorganic cation
a monovalent cation
UniProt
Zwitterionic form of any peptide where, in general, the amino terminus is positively charged and the carboxy terminus is negatively charged.
0
C2H4NO2R(C2H2NOR)n
chebi_ontology
a peptide
peptide zwitterions
CHEBI:60466
peptide zwitterion
a peptide
UniProt
peptide zwitterions
ChEBI
Any compound that has a nucleobase as a part.
chebi_ontology
nucleobase-containing compound
nucleobase-containing compounds
nucleobase-containing molecular entities
CHEBI:61120
nucleobase-containing molecular entity
nucleobase-containing compound
SUBMITTER
nucleobase-containing compounds
ChEBI
nucleobase-containing molecular entities
ChEBI
A polymer, composed of polyanion macromolecules.
chebi_ontology
polyanion
polyanions
CHEBI:61469
polyanionic polymer
polyanion
ChEBI
polyanions
ChEBI
A substance that removes electrons from another reactant in a redox reaction.
chebi_ontology
oxidant
oxidants
oxidiser
oxidisers
oxidising agents
oxidizer
oxidizers
oxidizing agent
oxidizing agents
CHEBI:63248
oxidising agent
oxidant
ChEBI
oxidants
ChEBI
oxidiser
ChEBI
oxidisers
ChEBI
oxidising agents
ChEBI
oxidizer
ChEBI
oxidizers
ChEBI
oxidizing agent
ChEBI
oxidizing agents
ChEBI
Any organooxygen compound derived from a carbohydrate by replacement of one or more hydroxy group(s) by an amino group, a thiol group or similar heteroatomic groups. The term also includes derivatives of these compounds.
chebi_ontology
carbohydrate derivatives
derivatised carbohydrate
derivatised carbohydrates
derivatized carbohydrate
derivatized carbohydrates
CHEBI:63299
carbohydrate derivative
carbohydrate derivatives
ChEBI
derivatised carbohydrate
ChEBI
derivatised carbohydrates
ChEBI
derivatized carbohydrate
ChEBI
derivatized carbohydrates
ChEBI
A carbohydrate derivative that is formally obtained from a carbohydrate acid.
chebi_ontology
carbohydrate acid derivatives
CHEBI:63436
carbohydrate acid derivative
carbohydrate acid derivatives
ChEBI
An aralylamino compound which contains one amino group connected to an aromatic ring by a two-carbon chain. Monoamines are derived from aromatic amino acids like phenylalanine, tyrosine, tryptophan, and the thyroid hormones by the action of aromatic amino acid decarboxylase enzymes.
PMID:21822758
PMID:21993877
PMID:22005599
PMID:22082101
PMID:22153577
PMID:22213370
PMID:22218931
PMID:22342987
PMID:22371656
chebi_ontology
monoamines
naturally occurring monoamine
naturally occurring monoamines
CHEBI:63534
monoamine
PMID:21822758
Europe PMC
PMID:21993877
Europe PMC
PMID:22005599
Europe PMC
PMID:22082101
Europe PMC
PMID:22153577
Europe PMC
PMID:22213370
Europe PMC
PMID:22218931
Europe PMC
PMID:22342987
Europe PMC
PMID:22371656
Europe PMC
monoamines
ChEBI
naturally occurring monoamine
ChEBI
naturally occurring monoamines
ChEBI
A carboxylic acid anion resulting from the deprotonation of the carboxy group of a carbohydrate acid derivative.
chebi_ontology
carbohydrate acid anion derivative
carbohydrate acid anion derivatives
carbohydrate acid derivative anions
CHEBI:63551
carbohydrate acid derivative anion
carbohydrate acid anion derivative
ChEBI
carbohydrate acid anion derivatives
ChEBI
carbohydrate acid derivative anions
ChEBI
Any substance which is added to food to preserve or enhance its flavour and/or appearance.
Wikipedia:Food_additive
chebi_ontology
food additives
CHEBI:64047
food additive
food additives
ChEBI
A food additive that is used to change or otherwise control the acidity or alkalinity of foods. They may be acids, bases, neutralising agents or buffering agents.
Wikipedia:Acidity_regulator
chebi_ontology
acidity regulator
acidity regulators
food acidity regulators
pH control agent
pH control agents
CHEBI:64049
food acidity regulator
acidity regulator
ChEBI
acidity regulators
ChEBI
food acidity regulators
ChEBI
pH control agent
ChEBI
pH control agents
ChEBI
An organic amino compound in which an aminoalkyl group is linked to an arene.
chebi_ontology
aralkylamino compounds
CHEBI:64365
aralkylamino compound
aralkylamino compounds
ChEBI
A fourteen-membered heterodetic cyclic peptide comprising the sequence Ala-Gly-Cys-Lys-Asn-Phe-Phe-Trp-Lys-Thr-Phe-Thr-Ser-Cys cyclised by a disulfide bridge between the two Cys residues at positions 3 and 14.
CAS:38916-34-6
Drug_Central:2997
HMDB:HMDB0013072
KEGG:C16022
KEGG:D07431
LINCS:LSM-5326
PMID:21922516
PMID:22129035
PMID:22147011
PMID:22251942
PMID:22483686
PMID:22509294
Reaxys:10148626
Wikipedia:Somatostatin
L-alanyl-N-[(4R,7S,10S,13S,16S,19S,22S,25S,28S,31S,34S,37R)-19,34-bis(4-aminobutyl)-31-(2-amino-2-oxoethyl)-13,25,28-tribenzyl-4-carboxy-10,16-bis[(1R)-1-hydroxyethyl]-7-(hydroxymethyl)-22-(1H-indol-3-ylmethyl)-6,9,12,15,18,21,24,27,30,33,36-undecaoxo-1,2-dithia-5,8,11,14,17,20,23,26,29,32,35-undecaazacyclooctatriacontan-37-yl]glycinamide
chebi_ontology
Ala-Gly-cyclo-[Cys-Lys-Asn-Phe-Phe-Trp-Lys-Thr-Phe-Thr-Ser-Cys]
L-alanylglycyl-L-cysteinyl-L-lysyl-L-asparaginyl-L-phenylalanyl-L-phenylalanyl-L-tryptophyl-L-lysyl-L-threonyl-L-phenylalanyl-L-threonyl-L-seryl-L-cysteine cyclic (3-14) disulfide
Somatostatin-1
Somatostatin-14
Synthetic growth hormone release-inhibiting hormone
somatostatin
somatostatina
somatostatine
somatostatinum
CHEBI:64628
somatostatin
CAS:38916-34-6
ChemIDplus
CAS:38916-34-6
KEGG DRUG
Drug_Central:2997
DrugCentral
PMID:21922516
Europe PMC
PMID:22129035
Europe PMC
PMID:22147011
Europe PMC
PMID:22251942
Europe PMC
PMID:22483686
Europe PMC
PMID:22509294
Europe PMC
Reaxys:10148626
Reaxys
L-alanyl-N-[(4R,7S,10S,13S,16S,19S,22S,25S,28S,31S,34S,37R)-19,34-bis(4-aminobutyl)-31-(2-amino-2-oxoethyl)-13,25,28-tribenzyl-4-carboxy-10,16-bis[(1R)-1-hydroxyethyl]-7-(hydroxymethyl)-22-(1H-indol-3-ylmethyl)-6,9,12,15,18,21,24,27,30,33,36-undecaoxo-1,2-dithia-5,8,11,14,17,20,23,26,29,32,35-undecaazacyclooctatriacontan-37-yl]glycinamide
IUPAC
Ala-Gly-cyclo-[Cys-Lys-Asn-Phe-Phe-Trp-Lys-Thr-Phe-Thr-Ser-Cys]
ChEBI
L-alanylglycyl-L-cysteinyl-L-lysyl-L-asparaginyl-L-phenylalanyl-L-phenylalanyl-L-tryptophyl-L-lysyl-L-threonyl-L-phenylalanyl-L-threonyl-L-seryl-L-cysteine cyclic (3-14) disulfide
ChemIDplus
Somatostatin-1
KEGG_COMPOUND
Somatostatin-14
KEGG_COMPOUND
Synthetic growth hormone release-inhibiting hormone
ChemIDplus
somatostatin
KEGG_DRUG
somatostatina
ChemIDplus
somatostatine
ChemIDplus
somatostatinum
ChemIDplus
An organic molecular entity containing a single carbon atom (C1).
chebi_ontology
one-carbon compounds
CHEBI:64708
one-carbon compound
one-carbon compounds
ChEBI
Any organic molecular entity that is acidic and contains carbon in covalent linkage.
chebi_ontology
organic acids
CHEBI:64709
organic acid
organic acids
ChEBI
A group that carries an overall positive charge.
chebi_ontology
cationic groups
CHEBI:64766
cationic group
cationic groups
ChEBI
A group that carries an overall negative charge.
chebi_ontology
anionic groups
CHEBI:64767
anionic group
anionic groups
ChEBI
A cationic group that contains carbon.
chebi_ontology
organic cationic groups
CHEBI:64769
organic cationic group
organic cationic groups
ChEBI
An anionic group that contains carbon.
chebi_ontology
organic anionic groups
CHEBI:64775
organic anionic group
organic anionic groups
ChEBI
An amino-acid residue carrying an overall negative charge.
chebi_ontology
amino acid anion residue
amino acid anion residues
amino-acid anion residue
amino-acid anion residues
anionic amino acid residue
anionic amino acid residues
CHEBI:64898
anionic amino-acid residue
amino acid anion residue
ChEBI
amino acid anion residues
ChEBI
amino-acid anion residue
ChEBI
amino-acid anion residues
ChEBI
anionic amino acid residue
ChEBI
anionic amino acid residues
ChEBI
Any substance that causes disturbance to organisms by chemical reaction or other activity on the molecular scale, when a sufficient quantity is absorbed by the organism.
Wikipedia:Poison
chebi_ontology
poisonous agent
poisonous agents
poisonous substance
poisonous substances
poisons
toxic agent
toxic agents
toxic substance
toxic substances
CHEBI:64909
poison
poisonous agent
ChEBI
poisonous agents
ChEBI
poisonous substance
ChEBI
poisonous substances
ChEBI
poisons
ChEBI
toxic agent
ChEBI
toxic agents
ChEBI
toxic substance
ChEBI
toxic substances
ChEBI
A carbohydrate derivative that is any derivative of a polysaccharide.
chebi_ontology
polysaccharide derivatives
CHEBI:65212
polysaccharide derivative
polysaccharide derivatives
ChEBI
Substances which are added to food in order to prevent decomposition caused by microbial growth or by undesirable chemical changes.
chebi_ontology
food preservatives
CHEBI:65255
food preservative
food preservatives
ChEBI
A food preservative which prevents decomposition of food by preventing the growth of fungi or bacteria. In European countries, E-numbers for permitted food preservatives are from E200 to E299, divided into sorbates (E200-209), benzoates (E210-219), sulfites (E220-229), phenols and formates (E230-239), nitrates (E240-259), acetates (E260-269), lactates (E270-279), propionates (E280-289) and others (E290-299).
chebi_ontology
antimicrobial food preservatives
antimicrobial preservative
antimicrobial preservatives
CHEBI:65256
antimicrobial food preservative
antimicrobial food preservatives
ChEBI
antimicrobial preservative
ChEBI
antimicrobial preservatives
ChEBI
An ammonium ion derivative resulting from the protonation of the nitrogen atom of a primary amino compound. Major species at pH 7.3.
chebi_ontology
a primary amine
substituted ammonium
CHEBI:65296
primary ammonium ion
a primary amine
UniProt
substituted ammonium
ChEBI
Any compound that has anti-inflammatory effects.
chebi_ontology
anti-inflammatory agents
antiinflammatory agent
antiinflammatory agents
CHEBI:67079
anti-inflammatory agent
anti-inflammatory agents
ChEBI
antiinflammatory agent
ChEBI
antiinflammatory agents
ChEBI
An organic cation that is the conjugate acid of (R)-noradrenaline, obtained by protonation of the priamry amino group; major species at pH 7.3.
PDBeChem:E5E
(2R)-2-(3,4-dihydroxyphenyl)-2-hydroxyethanaminium
chebi_ontology
(R)-noradrenaline
(R)-noradrenaline cation
(R)-noradrenalinium cation
(R)-noradrenalinium(1+)
CHEBI:72587
(R)-noradrenaline(1+)
(2R)-2-(3,4-dihydroxyphenyl)-2-hydroxyethanaminium
IUPAC
(R)-noradrenaline
UniProt
(R)-noradrenaline cation
ChEBI
(R)-noradrenalinium cation
ChEBI
(R)-noradrenalinium(1+)
ChEBI
Any molecule that consists of at least one carbon atom as part of the electrically neutral entity.
chebi_ontology
organic compound
organic compounds
organic molecules
CHEBI:72695
organic molecule
organic compound
ChEBI
organic compounds
ChEBI
organic molecules
ChEBI
A biomacromolecule composed of carbohydrate residues which is secreted by a microorganism into the surrounding environment.
MetaCyc:Exopolysaccharides
PMID:11160795
PMID:11785425
PMID:1444258
PMID:15738217
PMID:16075348
PMID:17440912
PMID:18097339
PMID:19453747
PMID:20172021
PMID:20631870
PMID:20718297
PMID:2688547
PMID:6354590
Wikipedia:Exopolysaccharide
Wikipedia:Extracellular_polymeric_substance
chebi_ontology
exopolysaccharides
extracellular polymeric substance
extracellular polymeric substances
CHEBI:72813
exopolysaccharide
PMID:11160795
Europe PMC
PMID:11785425
Europe PMC
PMID:1444258
Europe PMC
PMID:15738217
Europe PMC
PMID:16075348
Europe PMC
PMID:17440912
Europe PMC
PMID:18097339
Europe PMC
PMID:19453747
Europe PMC
PMID:20172021
Europe PMC
PMID:20631870
Europe PMC
PMID:20718297
Europe PMC
PMID:2688547
Europe PMC
PMID:6354590
Europe PMC
exopolysaccharides
ChEBI
extracellular polymeric substance
ChEBI
extracellular polymeric substances
ChEBI
A mancude heterobicyclic organic group consisting of a benzene ring fused to a pyrrole ring.
chebi_ontology
CHEBI:73398
indole skeleton
A bicyclic organic group that contains both carbon and hetero atoms.
chebi_ontology
organic heterobicyclic rings
CHEBI:73541
organic heterobicyclic ring
organic heterobicyclic rings
ChEBI
Any metabolite produced during a metabolic reaction in eukaryotes, the taxon that include members of the fungi, plantae and animalia kingdoms.
chebi_ontology
eukaryotic metabolites
CHEBI:75763
eukaryotic metabolite
eukaryotic metabolites
ChEBI
Any eukaryotic metabolite produced during a metabolic reaction in animals that include diverse creatures from sponges, insects to mammals.
CHEBI:77721
CHEBI:77743
chebi_ontology
animal metabolites
CHEBI:75767
animal metabolite
animal metabolites
ChEBI
Any animal metabolite produced during a metabolic reaction in mammals.
CHEBI:77464
CHEBI:77744
chebi_ontology
mammalian metabolites
CHEBI:75768
mammalian metabolite
mammalian metabolites
ChEBI
Any mammalian metabolite produced during a metabolic reaction in a mouse (Mus musculus).
chebi_ontology
Mus musculus metabolite
Mus musculus metabolites
mouse metabolites
CHEBI:75771
mouse metabolite
Mus musculus metabolite
ChEBI
Mus musculus metabolites
ChEBI
mouse metabolites
ChEBI
Any fungal metabolite produced during a metabolic reaction in Baker's yeast (Saccharomyces cerevisiae).
CHEBI:76949
CHEBI:76951
chebi_ontology
S. cerevisiae metabolite
S. cerevisiae metabolites
S. cerevisiae secondary metabolite
S. cerevisiae secondary metabolites
Saccharomyces cerevisiae metabolites
Saccharomyces cerevisiae secondary metabolites
baker's yeast metabolite
baker's yeast metabolites
baker's yeast secondary metabolite
baker's yeast secondary metabolites
CHEBI:75772
Saccharomyces cerevisiae metabolite
S. cerevisiae metabolite
ChEBI
S. cerevisiae metabolites
ChEBI
S. cerevisiae secondary metabolite
ChEBI
S. cerevisiae secondary metabolites
ChEBI
Saccharomyces cerevisiae metabolites
ChEBI
Saccharomyces cerevisiae secondary metabolites
ChEBI
baker's yeast metabolite
ChEBI
baker's yeast metabolites
ChEBI
baker's yeast secondary metabolite
ChEBI
baker's yeast secondary metabolites
ChEBI
Any metabolite produced during a metabolic reaction in prokaryotes, the taxon that include members of domains such as the bacteria and archaea.
chebi_ontology
prokaryotic metabolites
CHEBI:75787
prokaryotic metabolite
prokaryotic metabolites
ChEBI
Any metabolite produced by metabolism of a xenobiotic compound.
chebi_ontology
xenobiotic metabolites
CHEBI:76206
xenobiotic metabolite
xenobiotic metabolites
ChEBI
envoPolar
greenhouse gas
Any enzyme inhibitor that interferes with the action of a hydrolase (EC 3.*.*.*).
Wikipedia:Hydrolase
chebi_ontology
EC 3.* (hydrolase) inhibitors
EC 3.* inhibitor
EC 3.* inhibitors
EC 3.*.*.* inhibitor
EC 3.*.*.* inhibitors
hydrolase (EC 3.*) inhibitor
hydrolase (EC 3.*) inhibitors
hydrolase inhibitor
hydrolase inhibitors
CHEBI:76759
EC 3.* (hydrolase) inhibitor
EC 3.* (hydrolase) inhibitors
ChEBI
EC 3.* inhibitor
ChEBI
EC 3.* inhibitors
ChEBI
EC 3.*.*.* inhibitor
ChEBI
EC 3.*.*.* inhibitors
ChEBI
hydrolase (EC 3.*) inhibitor
ChEBI
hydrolase (EC 3.*) inhibitors
ChEBI
hydrolase inhibitor
ChEBI
hydrolase inhibitors
ChEBI
Any hydrolase inhibitor that interferes with the action of a hydrolase acting on C-N bonds, other than peptide bonds (EC 3.5.*.*).
chebi_ontology
EC 3.5.* (hydrolase acting on non-peptide C-N bond) inhibitor
EC 3.5.* (hydrolase acting on non-peptide C-N bond) inhibitors
EC 3.5.* (hydrolases acting on C-N bonds, other than peptide bonds) inhibitor
EC 3.5.* (hydrolases acting on C-N bonds, other than peptide bonds) inhibitors
EC 3.5.* (hydrolases acting on non-peptide C-N bonds) inhibitors
EC 3.5.* inhibitor
EC 3.5.* inhibitors
CHEBI:76764
EC 3.5.* (hydrolases acting on non-peptide C-N bonds) inhibitor
EC 3.5.* (hydrolase acting on non-peptide C-N bond) inhibitor
ChEBI
EC 3.5.* (hydrolase acting on non-peptide C-N bond) inhibitors
ChEBI
EC 3.5.* (hydrolases acting on C-N bonds, other than peptide bonds) inhibitor
ChEBI
EC 3.5.* (hydrolases acting on C-N bonds, other than peptide bonds) inhibitors
ChEBI
EC 3.5.* (hydrolases acting on non-peptide C-N bonds) inhibitors
ChEBI
EC 3.5.* inhibitor
ChEBI
EC 3.5.* inhibitors
ChEBI
An EC 3.5.* (hydrolases acting on non-peptide C-N bonds) inhibitor that interferes with the action of any non-peptide linear amide C-N hydrolase (EC 3.5.1.*).
chebi_ontology
EC 3.5.1.* (non-peptide linear amide C-N hydrolase) inhibitors
EC 3.5.1.* inhibitor
EC 3.5.1.* inhibitors
non-peptide linear amide C-N hydrolase (EC 3.5.1.*) inhibitor
non-peptide linear amide C-N hydrolase (EC 3.5.1.*) inhibitors
CHEBI:76807
EC 3.5.1.* (non-peptide linear amide C-N hydrolase) inhibitor
EC 3.5.1.* (non-peptide linear amide C-N hydrolase) inhibitors
ChEBI
EC 3.5.1.* inhibitor
ChEBI
EC 3.5.1.* inhibitors
ChEBI
non-peptide linear amide C-N hydrolase (EC 3.5.1.*) inhibitor
ChEBI
non-peptide linear amide C-N hydrolase (EC 3.5.1.*) inhibitors
ChEBI
Any eukaryotic metabolite produced during a metabolic reaction in plants, the kingdom that include flowering plants, conifers and other gymnosperms.
CHEBI:75766
CHEBI:76925
chebi_ontology
plant metabolites
plant secondary metabolites
CHEBI:76924
plant metabolite
plant metabolites
ChEBI
plant secondary metabolites
ChEBI
Any eukaryotic metabolite produced during a metabolic reaction in fungi, the kingdom that includes microorganisms such as the yeasts and moulds.
CHEBI:75765
CHEBI:76947
chebi_ontology
fungal metabolites
CHEBI:76946
fungal metabolite
fungal metabolites
ChEBI
Any human metabolite produced by metabolism of a xenobiotic compound in humans.
chebi_ontology
human xenobiotic metabolites
CHEBI:76967
human xenobiotic metabolite
human xenobiotic metabolites
ChEBI
Any prokaryotic metabolite produced during a metabolic reaction in bacteria.
CHEBI:75760
CHEBI:76970
chebi_ontology
CHEBI:76969
bacterial metabolite
Any bacterial metabolite produced during a metabolic reaction in Escherichia coli.
chebi_ontology
E.coli metabolite
E.coli metabolites
Escherichia coli metabolites
CHEBI:76971
Escherichia coli metabolite
E.coli metabolite
ChEBI
E.coli metabolites
ChEBI
Escherichia coli metabolites
ChEBI
A stable isotope of boron with relative atomic mass 10.0129370, 19.9 atom percent natural abundance and nuclear spin 3+.
0
[10B]
InChI=1S/B/i1-1
ZOXJGFHDIHLPTG-BJUDXGSMSA-N
10.013
10.01294
[10B]
boron-10
chebi_ontology
(10)B
CHEBI:77014
boron-10 atom
boron-10
IUPAC
(10)B
SUBMITTER
Any mammalian metabolite produced during a metabolic reaction in humans (Homo sapiens).
CHEBI:75770
CHEBI:77123
chebi_ontology
H. sapiens metabolite
H. sapiens metabolites
Homo sapiens metabolite
Homo sapiens metabolites
CHEBI:77746
human metabolite
H. sapiens metabolite
ChEBI
H. sapiens metabolites
ChEBI
Homo sapiens metabolite
ChEBI
Homo sapiens metabolites
ChEBI
An EC 3.5.1.* (non-peptide linear amide C-N hydrolase) inhibitor that interferes with the action of amidase (EC 3.5.1.4).
Wikipedia:Amidase
chebi_ontology
EC 3.5.1.4 (amidase) inhibitors
EC 3.5.1.4 inhibitor
EC 3.5.1.4 inhibitors
N-acetylaminohydrolase inhibitor
N-acetylaminohydrolase inhibitors
acylamidase inhibitor
acylamidase inhibitors
acylamide amidohydrolase inhibitor
acylamide amidohydrolase inhibitors
amidase (EC 3.5.1.4) inhibitor
amidase (EC 3.5.1.4) inhibitors
amidase inhibitor
amidase inhibitors
amidohydrolase inhibitor
amidohydrolase inhibitors
deaminase inhibitor
deaminase inhibitors
fatty acylamidase inhibitor
fatty acylamidase inhibitors
CHEBI:77941
EC 3.5.1.4 (amidase) inhibitor
EC 3.5.1.4 (amidase) inhibitors
ChEBI
EC 3.5.1.4 inhibitor
ChEBI
EC 3.5.1.4 inhibitors
ChEBI
N-acetylaminohydrolase inhibitor
ChEBI
N-acetylaminohydrolase inhibitors
ChEBI
acylamidase inhibitor
ChEBI
acylamidase inhibitors
ChEBI
acylamide amidohydrolase inhibitor
ChEBI
acylamide amidohydrolase inhibitors
ChEBI
amidase (EC 3.5.1.4) inhibitor
ChEBI
amidase (EC 3.5.1.4) inhibitors
ChEBI
amidase inhibitor
ChEBI
amidase inhibitors
ChEBI
amidohydrolase inhibitor
ChEBI
amidohydrolase inhibitors
ChEBI
deaminase inhibitor
ChEBI
deaminase inhibitors
ChEBI
fatty acylamidase inhibitor
ChEBI
fatty acylamidase inhibitors
ChEBI
A food additive that is a (generally inert) gas which is used to envelop foodstuffs during packing and so protect them from unwanted chemical reactions such as food spoilage or oxidation during subsequent transport and storage. The term includes propellant gases, used to expel foods from a container.
Wikipedia:Packaging_gas
chebi_ontology
food packaging gases
CHEBI:77974
food packaging gas
food packaging gases
ChEBI
A physiological role played by any substance that is distributed in foodstuffs. It includes materials derived from plants or animals, such as vitamins or minerals, as well as environmental contaminants.
chebi_ontology
dietary component
dietary components
food components
CHEBI:78295
food component
dietary component
ChEBI
dietary components
ChEBI
food components
ChEBI
environmental contaminant
A substance used in a thermodynamic heat pump cycle or refrigeration cycle that undergoes a phase change from a gas to a liquid and back. Refrigerants are used in air-conditioning systems and freezers or refrigerators and are assigned a "R" number (by ASHRAE - formerly the American Society of Heating, Refrigerating and Air Conditioning Engineers), which is determined systematically according to their molecular structure.
Wikipedia:Refrigerant
chebi_ontology
refrigerants
CHEBI:78433
refrigerant
refrigerants
ChEBI
An amino acid zwitterion obtained by transfer of a proton from the carboxy to the amino group of any alpha-amino acid; major species at pH 7.3.
An amino acid-zwitterion obtained by transfer of a proton from the carboxy to the amino group of any alpha-amino acid; major species at pH 7.3.
0
C2H4NO2R
74.059
74.02420
[NH3+]C([*])C([O-])=O
CHEBI:83409
MetaCyc:Alpha-Amino-Acids
chebi_ontology
alpha-amino acid zwitterion
alpha-amino acid zwitterions
alpha-amino-acid zwitterions
an alpha-amino acid
CHEBI:78608
alpha-amino acid zwitterion
alpha-amino-acid zwitterion
MetaCyc:Alpha-Amino-Acids
SUBMITTER
alpha-amino acid zwitterion
ChEBI
alpha-amino acid zwitterions
ChEBI
alpha-amino-acid zwitterions
ChEBI
an alpha-amino acid
UniProt
Any organooxygen compound that is a polyhydroxy-aldehyde or -ketone, or a compound derived from one. Carbohydrates contain only carbon, hydrogen and oxygen and usually have an empirical formula Cm(H2O)n; carbohydrate derivatives may contain other elements by substitution or condensation.
chebi_ontology
carbohydrates and derivatives
carbohydrates and their derivatives
CHEBI:78616
carbohydrates and carbohydrate derivatives
carbohydrates and derivatives
ChEBI
carbohydrates and their derivatives
ChEBI
Any metabolite produced by all living cells.
chebi_ontology
essential metabolite
essential metabolites
fundamental metabolites
CHEBI:78675
fundamental metabolite
essential metabolite
ChEBI
essential metabolites
ChEBI
fundamental metabolites
ChEBI
Any inorganic anion with a valency of two.
chebi_ontology
divalent inorganic anions
CHEBI:79388
divalent inorganic anion
divalent inorganic anions
ChEBI
Any inorganic anion with a valency of one.
chebi_ontology
monovalent inorganic anions
CHEBI:79389
monovalent inorganic anion
monovalent inorganic anions
ChEBI
A zinc atom in which the nucleus contains 35 neutrons. It has a half-life of 244 days, decaying by emission of a positron (beta(+) decay), and is the most abundant and stable of the 25 known radioisotopes of zinc.
0
[65Zn]
InChI=1S/Zn/i1+0
HCHKCACWOHOZIP-IGMARMGPSA-N
64.929
64.92925
[65Zn]
CAS:13982-39-3
PMID:11431342
PMID:13615323
PMID:13694484
PMID:13734409
PMID:13744376
PMID:13783426
PMID:13841044
PMID:14425466
PMID:1682403
PMID:17807441
PMID:19448268
((65)Zn)zinc
chebi_ontology
(65)30Zn
(65)Zn
Zn-65
zinc, isotope of mass 65
zinc-65
CHEBI:82623
zinc-65 atom
CAS:13982-39-3
ChemIDplus
PMID:11431342
Europe PMC
PMID:13615323
Europe PMC
PMID:13694484
Europe PMC
PMID:13734409
Europe PMC
PMID:13744376
Europe PMC
PMID:13783426
Europe PMC
PMID:13841044
Europe PMC
PMID:14425466
Europe PMC
PMID:1682403
Europe PMC
PMID:17807441
Europe PMC
PMID:19448268
Europe PMC
((65)Zn)zinc
IUPAC
(65)30Zn
IUPAC
(65)Zn
IUPAC
Zn-65
ChEBI
zinc, isotope of mass 65
ChemIDplus
zinc-65
ChemIDplus
An animal metabolite produced by arthropods such as crabs, lobsters, crayfish, shrimps and krill.
chebi_ontology
crustacean metabolites
CHEBI:83039
crustacean metabolite
crustacean metabolites
ChEBI
A Daphnia metabolite produced by the species Daphnia magna.
chebi_ontology
Daphnia magna metabolites
CHEBI:83056
Daphnia magna metabolite
Daphnia magna metabolites
ChEBI
A crustacean metabolite produced by the genus of small planktonic arthropods, Daphnia
Wikipedia:Daphnia
chebi_ontology
Daphnia metabolites
CHEBI:83057
Daphnia metabolite
Daphnia metabolites
ChEBI
Any member of the class of indoles carrying at least one hydroxy group.
chebi_ontology
CHEBI:84729
hydroxyindoles
Any metal which causes the onset of an allergic reaction.
chebi_ontology
allergenic metal
allergenic metals
metal allergens
CHEBI:88184
metal allergen
allergenic metal
ChEBI
allergenic metals
ChEBI
metal allergens
ChEBI
An independent material continuant that is self-connected and retains its identity over time.
CHMO:0000993
portion of material
An independent material continuant that is self-connected and retains its identity over time.
https://orcid.org/0000-0001-5985-7429
A piece of apparatus that is used to measure a physical quantity.
CHMO:0002793
sensor
A piece of apparatus that is used to measure a physical quantity.
https://orcid.org/0000-0001-5985-7429
Measurement of the dose of a substance taken up by an object.
CHMO:0002796
dosimetry
Measurement of the dose of a substance taken up by an object.
https://doi.org/10.1039/9781847559753-00013
A sensor that is used to measure the dose of a substance taken by up an object.
CHMO:0002797
dosimeter
A sensor that is used to measure the dose of a substance taken by up an object.
https://doi.org/10.1039/9781847559753-00013
cell
PMID:18089833.Cancer Res. 2007 Dec 15;67(24):12018-25. "...Epithelial cells were harvested from histologically confirmed adenocarcinomas .."
A material entity of anatomical origin (part of or deriving from an organism) that has as its parts a maximally connected cell compartment surrounded by a plasma membrane.
CL and GO definitions of cell differ based on inclusive or exclusive of cell wall, etc.
We struggled with this definition. We are worried about circularity. We also considered requiring the capability of metabolism.
CALOHA:TS-2035
CALOHA:TS-2035
FBbt:00007002
FMA:68646
FMA:68646
GO:0005623
GO:0005623
KUPO:0000002
KUPO:0000002
MESH:D002477
NCIt:C12508
NCIt:C48694
VHOG:0001533
VHOG:0001533
WBbt:0004017
WBbt:0004017
XAO:0003012
XAO:0003012
ZFA:0009000
The definition of cell is intended to represent all cells, and thus a cell is defined as a material entity and not an anatomical structure, which implies that it is part of an organism (or the entirety of one).
cell
A material entity of anatomical origin (part of or deriving from an organism) that has as its parts a maximally connected cell compartment surrounded by a plasma membrane.
CARO:mah
FBbt:00007002
ZFA:0009000
Any fibroblast that is derived from the neural crest.
fibroblast neural crest derived
neural crest derived fibroblast
Any fibroblast that is derived from the neural crest.
https://orcid.org/0000-0001-5208-3432
Any sensory receptor cell that is a(n) neuron and is capable of some detection of stimulus involved in sensory perception.
neuronal receptor cell (sensu Animalia)
neuronal receptor cell
Any sensory receptor cell that is a(n) neuron and is capable of some detection of stimulus involved in sensory perception.
FBC:Autogenerated
A cell found in the embryo before the formation of all the gem layers is complete.
early embryonic cell (metazoa)
A cell found in the embryo before the formation of all the gem layers is complete.
GOC:tfm
Cell that is part of the migratory cranial neural crest population. Migratory cranial neural crest cells develop from premigratory cranial neural crest cells and have undergone epithelial to mesenchymal transition and delamination.
migratory cranial neural crest cell
Cell that is part of the migratory cranial neural crest population. Migratory cranial neural crest cells develop from premigratory cranial neural crest cells and have undergone epithelial to mesenchymal transition and delamination.
ZFA:0007091
https://orcid.org/0000-0001-5208-3432
Cell that is part of the migratory trunk neural crest population. Migratory trunk neural crest cells develop from premigratory trunk neural crest cells and have undergone epithelial to mesenchymal transition and delamination.
migratory trunk neural crest cell
Cell that is part of the migratory trunk neural crest population. Migratory trunk neural crest cells develop from premigratory trunk neural crest cells and have undergone epithelial to mesenchymal transition and delamination.
ZFA:0007095
https://orcid.org/0000-0001-5208-3432
A stem cell that is the precursor of gametes.
germline stem cell
germ line stem cell
true
A stem cell that is the precursor of gametes.
doi:10.1016/j.stem.2012.05.016
Female germ cell is a germ cell that supports female gamete production.
MA:0000388
VHOG:0001530
ncithesaurus:Egg
female germ cell
true
Female germ cell is a germ cell that supports female gamete production.
GOC:tfm
PMID:11023867
PMID:20454446
A stem cell that is the precursor of female gametes.
female germ line stem cell
true
true
A stem cell that is the precursor of female gametes.
doi:10.1016/j.stem.2012.05.016
A female germ cell that has entered meiosis.
BTO:0000964
CALOHA:TS-0711
FMA:18644
MESH:D009865
WBbt:0006797
oogonium
oocyte
true
A female germ cell that has entered meiosis.
GOC:tfm
ISBN:0721662544
An undifferentiated germ cell that proliferates rapidly and gives rise to oocytes.
FMA:83673
oogonial cell
true
An undifferentiated germ cell that proliferates rapidly and gives rise to oocytes.
GOC:tfm
ISBN:0721662544
A female gamete where meiosis has progressed to metaphase II and is able to participate in fertilization.
BTO:0000369
BTO:0003801
CALOHA:TS-2191
FMA:67343
MESH:D010063
mature oocyte
ovum
egg cell
https://www.swissbiopics.org/api/image/Egg_cell.svg
true
A female gamete where meiosis has progressed to metaphase II and is able to participate in fertilization.
GOC:tfm
ISBN:0721662544
A smooth muscle cell derived from the neural crest.
smooth muscle cell neural crest derived
true
A smooth muscle cell derived from the neural crest.
https://orcid.org/0000-0001-5208-3432
Any neuron that develops from some migratory neural crest cell.
neuron neural crest derived
neural crest derived neuron
true
Any neuron that develops from some migratory neural crest cell.
FBC:Autogenerated
A cell that will develop into a neuron often after a migration phase.
BTO:0000930
FMA:70563
neuroblast
neuroblast (sensu Vertebrata)
A cell that will develop into a neuron often after a migration phase.
GOC:NV
http://en.wikipedia.org/wiki/Neuroblast
A relatively undifferentiated cell that retains the ability to divide and proliferate throughout life to provide progenitor cells that can differentiate into specialized cells.
CALOHA:TS-2086
FMA:63368
animal stem cell
This term applies to metazoan. For plant stem cells, consider using PO:0004011 ‘initial cell’ or its parent PO:0004010 ‘meristematic cell’.
stem cell
A relatively undifferentiated cell that retains the ability to divide and proliferate throughout life to provide progenitor cells that can differentiate into specialized cells.
GOC:tfm
MESH:D013234
A stem cell that self-renews as well as give rise to a single mature cell type.
FMA:70569
unipotent stem cell
unipotential stem cell
single fate stem cell
A stem cell that self-renews as well as give rise to a single mature cell type.
GOC:tfm
epithelial stem cell
epithelial fate stem cell
A stem cell from which all cells of the lymphoid and myeloid lineages develop, including blood cells and cells of the immune system. Hematopoietic stem cells lack cell markers of effector cells (lin-negative). Lin-negative is defined by lacking one or more of the following cell surface markers: CD2, CD3 epsilon, CD4, CD5 ,CD8 alpha chain, CD11b, CD14, CD19, CD20, CD56, ly6G, ter119.
BTO:0000725
CALOHA:TS-0448
FMA:86475
MESH:D006412
VHOG:0001485
blood forming stem cell
hemopoietic stem cell
HSC
colony forming unit hematopoietic
Markers differ between species, and two sets of markers have been described for mice. HSCs are reportedly CD34-positive, CD45-positive, CD48-negative, CD150-positive, CD133-positive, and CD244-negative.
hematopoietic stem cell
A stem cell from which all cells of the lymphoid and myeloid lineages develop, including blood cells and cells of the immune system. Hematopoietic stem cells lack cell markers of effector cells (lin-negative). Lin-negative is defined by lacking one or more of the following cell surface markers: CD2, CD3 epsilon, CD4, CD5 ,CD8 alpha chain, CD11b, CD14, CD19, CD20, CD56, ly6G, ter119.
GOC:add
GOC:dsd
GOC:tfm
PMID:19022770
http://en.wikipedia.org/wiki/Hematopoietic_stem_cell
HSC
A progenitor cell committed to the erythroid lineage.
BTO:0004911
BFU-E
CFU-E
blast forming unit erythroid
burst forming unit erythroid
colony forming unit erythroid
erythroid stem cell
erythroid progenitor cell
true
A progenitor cell committed to the erythroid lineage.
GOC:add
ISBN:0721601464
BFU-E
CFU-E
A cell that is within the developmental lineage of gametes and is able to pass along its genetic material to offspring.
Originally this term had some plant germ line cell children.
germ line cell
A cell that is within the developmental lineage of gametes and is able to pass along its genetic material to offspring.
GOC:tfm
ISBN:0721662544
A stem cell that can give rise to multiple lineages of cells.
FMA:84789
multi-fate stem cell
multifate stem cell
multipotent cell
multipotent stem cell
multi fate stem cell
A stem cell that can give rise to multiple lineages of cells.
GOC:add
A progenitor cell committed to myeloid lineage, including the megakaryocyte and erythroid lineages.
BTO:0004730
common myeloid precursor
CFU-GEMM
CFU-S
CMP
colony forming unit granulocyte, erythrocyte, macrophage, and megakaryocyte
multipotential myeloid stem cell
myeloid stem cell
pluripotent stem cell (bone marrow)
This cell type is intended to be compatible with any vertebrate common myeloid progenitor. For mammalian CMP known to be CD34-positive, please use the term 'common myeloid progenitor, CD34-positive' (CL_0001059).
common myeloid progenitor
true
A progenitor cell committed to myeloid lineage, including the megakaryocyte and erythroid lineages.
GOC:add
ISBN:0878932437
MESH:D023461
CFU-GEMM
ISBN:0878932437
CFU-S
ISBN:0878932437
CMP
ISBN:0878932437
colony forming unit granulocyte, erythrocyte, macrophage, and megakaryocyte
ISBN:0878932437
multipotential myeloid stem cell
ISBN:0878932437
myeloid stem cell
ISBN:0878932437
pluripotent stem cell (bone marrow)
ISBN:0878932437
A progenitor cell committed to the megakaryocyte and erythroid lineages.
CFU-EM
CFU-MegE
MEP
Meg/E progenitor
colony forming unit erythroid megakaryocyte
megakaryocyte/erythrocyte progenitor
megakaryocyte/erythroid progenitor cell
MEPs are reportedly CD19-negative, CD34-negative, CD45RA-negative, CD110-positive, CD117-positive, and SCA1-negative and reportedly express the transcription factors GATA-1 and NF-E2.
megakaryocyte-erythroid progenitor cell
true
A progenitor cell committed to the megakaryocyte and erythroid lineages.
GOC:add
GOC:dsd
GOC:tfm
MESH:D055015
PMID:16647566
http://en.wikipedia.org/wiki/Megakaryocyte-erythroid_progenitor_cell
A stem cell from which all cells of the body can form.
FMA:84790
MESH:D039901
totipotential stem cell
totipotent stem cell
A stem cell from which all cells of the body can form.
GOC:add
GOC:tfm
A precursor cell with a limited number of potential fates.
BTO:0000125
FMA:84782
blast cell
define using PATO mulit-potent or oligopotent?
non-terminally differentiated cell
A precursor cell with a limited number of potential fates.
SANBI:mhl
A cell that is commited to differentiating into a muscle cell. Embryonic myoblasts develop from the mesoderm. They undergo proliferation, migrate to their various sites, and then differentiate into the appropriate form of myocytes. Myoblasts also occur as transient populations of cells in muscles undergoing repair.
BTO:0000222
CALOHA:TS-0650
FMA:70335
VHOG:0001529
myoblast
A cell that is commited to differentiating into a muscle cell. Embryonic myoblasts develop from the mesoderm. They undergo proliferation, migrate to their various sites, and then differentiate into the appropriate form of myocytes. Myoblasts also occur as transient populations of cells in muscles undergoing repair.
GOC:tfm
MESH:D032446
PMID:21849021
A connective tissue cell which secretes an extracellular matrix rich in collagen and other macromolecules. Flattened and irregular in outline with branching processes; appear fusiform or spindle-shaped.
BTO:0000452
CALOHA:TS-0362
FMA:63877
NCIT:C12482
VHOG:0001482
These cells may be vimentin-positive, fibronectin-positive, fsp1-positive, MMP-1-positive, collagen I-positive, collagen III-positive, and alpha-SMA-negative.
fibroblast
A connective tissue cell which secretes an extracellular matrix rich in collagen and other macromolecules. Flattened and irregular in outline with branching processes; appear fusiform or spindle-shaped.
ISBN:0517223651
MESH:D005347
http://en.wikipedia.org/wiki/Fibroblast
Skeletogenic cell that is typically non-terminally differentiated, secretes an avascular, GAG rich matrix; is not buried in cartilage tissue matrix, retains the ability to divide, located adjacent to cartilage tissue (including within the perichondrium), and develops from prechondroblast (and thus prechondrogenic) cell.
BTO:0003607
FMA:66783
chrondoplast
chondroblast
Skeletogenic cell that is typically non-terminally differentiated, secretes an avascular, GAG rich matrix; is not buried in cartilage tissue matrix, retains the ability to divide, located adjacent to cartilage tissue (including within the perichondrium), and develops from prechondroblast (and thus prechondrogenic) cell.
GOC:tfm
GO_REF:0000034
ISBN:0618947256
A cell that has a filiform extrusion of the cell surface.
VHOG:0001532
XAO:0000031
ciliated cell
A cell that has a filiform extrusion of the cell surface.
GOC:tfm
A cell that is usually found in a two-dimensional sheet with a free surface. The cell has a cytoskeleton that allows for tight cell to cell contact and for cell polarity where apical part is directed towards the lumen and the basal part to the basal lamina.
BTO:0000414
CALOHA:TS-2026
CARO:0000077
FMA:66768
WBbt:0003672
epitheliocyte
epithelial cell
https://www.swissbiopics.org/api/image/Epithelial_cells.svg
A cell that is usually found in a two-dimensional sheet with a free surface. The cell has a cytoskeleton that allows for tight cell to cell contact and for cell polarity where apical part is directed towards the lumen and the basal part to the basal lamina.
FB:ma
GOC:tfm
MESH:D004847
An epithelial cell that has a cilia.
FMA:70605
ciliated epithelial cell
An epithelial cell that has a cilia.
GOC:tfm
An epithelial cell that is part of a duct.
duct epithelial cell
An epithelial cell that is part of a duct.
https://orcid.org/0000-0001-5208-3432
branched duct epithelial cell
An endothelial cell that lines the vasculature.
blood vessel endothelial cell
An endothelial cell that lines the vasculature.
GOC:tfm
A columnar/cuboidal epithelial cell is a cell usually found in a two dimensional sheet with a free surface. Columnar/cuboidal epithelial cells take on the shape of a column or cube.
columnar/cuboidal epithelial cell
A columnar/cuboidal epithelial cell is a cell usually found in a two dimensional sheet with a free surface. Columnar/cuboidal epithelial cells take on the shape of a column or cube.
GO:0002065
https://orcid.org/0000-0001-5208-3432
Any epithelial cell that is part of some squamous epithelium.
CALOHA:TS-1249
squamous epithelial cell
Any epithelial cell that is part of some squamous epithelium.
FBC:Autogenerated
A flat, squamous-like epithelial cell of mesodermal origin. It forms the mesothelium, which lines the body's serous cavities including the pleural, peritoneal, and pericardial spaces. This cell plays a crucial role in synthesizing and secreting lubricants, such as glycosaminoglycans and surfactants, which minimize friction between adjacent tissues during movement.
FMA:66773
mesotheliocyte
Mesothelial cells, which morphologically resemble squamous epithelial cells, express both epithelial markers (cytokeratins) and mesenchymal markers (vimentin), reflecting their mesodermal origin. They feature surface microvilli and apical-basal polarity. Under certain conditions, they can undergo mesothelial-to-mesenchymal transition. These cells also produce extracellular matrix proteins, maintain serosal homeostasis, and facilitate fluid transport.
mesothelial cell
A flat, squamous-like epithelial cell of mesodermal origin. It forms the mesothelium, which lines the body's serous cavities including the pleural, peritoneal, and pericardial spaces. This cell plays a crucial role in synthesizing and secreting lubricants, such as glycosaminoglycans and surfactants, which minimize friction between adjacent tissues during movement.
GOC:tfm
ISBN:0721662544
PMID:26106328
Mesothelial cells, which morphologically resemble squamous epithelial cells, express both epithelial markers (cytokeratins) and mesenchymal markers (vimentin), reflecting their mesodermal origin. They feature surface microvilli and apical-basal polarity. Under certain conditions, they can undergo mesothelial-to-mesenchymal transition. These cells also produce extracellular matrix proteins, maintain serosal homeostasis, and facilitate fluid transport.
PMID:26106328
A cell which moves among different tissues of the body, via blood, lymph, or other medium.
circulating cell
A cell which moves among different tissues of the body, via blood, lymph, or other medium.
GOC:add
A cell found predominately in the blood.
FMA:62844
MESH:D001773
blood cell
true
A cell found predominately in the blood.
GOC:add
GOC:tfm
An epithelial cell of the lung.
BTO:0004299
lung epithelial cell
epithelial cell of lung
An epithelial cell of the lung.
https://orcid.org/0000-0001-5208-3432
An epithelial cell of the pancreas.
BTO:0000028
pancreas epithelial cell
pancreatic epithelial cell
epithelial cell of pancreas
An epithelial cell of the pancreas.
GOC:tfm
neuron associated cell
A specialized epithelial cell involved in sensory perception. Restricted to special sense organs of the olfactory, gustatory, and vestibulocochlear receptor systems; contain sensory cells surrounded by supportive, non-receptive cells.
neuroepithelial cell
BTO:0004301
The term "neuroepithelial cell" is used to describe both this cell type and neurecto-epithelial cell (CL:0000710).
sensory epithelial cell
A specialized epithelial cell involved in sensory perception. Restricted to special sense organs of the olfactory, gustatory, and vestibulocochlear receptor systems; contain sensory cells surrounded by supportive, non-receptive cells.
GOC:tfm
ISBN:0517223651
ISBN:0721662544
Most generally any neuron which is not motor or sensory. Interneurons may also refer to neurons whose axons remain within a particular brain region as contrasted with projection neurons which have axons projecting to other brain regions.
BTO:0003811
FMA:67313
WBbt:0005113
CNS interneuron
interneuron
Most generally any neuron which is not motor or sensory. Interneurons may also refer to neurons whose axons remain within a particular brain region as contrasted with projection neurons which have axons projecting to other brain regions.
GOC:tfm
MESH:D007395
An efferent neuron that passes from the central nervous system or a ganglion toward or to a muscle and conducts an impulse that causes or inhibits movement.
BTO:0000312
FMA:83617
WBbt:0005409
motoneuron
motor neuron
An efferent neuron that passes from the central nervous system or a ganglion toward or to a muscle and conducts an impulse that causes or inhibits movement.
MESH:D009046
PMID:16875686
Any neuron having a sensory function; an afferent neuron conveying sensory impulses.
BTO:0001037
FMA:84649
MESH:D011984
WBbt:0005759
sensory neuron
Any neuron having a sensory function; an afferent neuron conveying sensory impulses.
ISBN:0721662544
A neuron whose cell body is within an autonomic ganglion.
FMA:80121
autonomic neuron
A neuron whose cell body is within an autonomic ganglion.
GOC:tfm
A neuron that uses acetylcholine as a vesicular neurotransmitter.
BTO:0004902
FMA:84796
MESH:D059329
WBbt:0006840
cholinergic neuron
A neuron that uses acetylcholine as a vesicular neurotransmitter.
GOC:tfm
An endothelial cell comprises the outermost layer or lining of anatomical structures and can be squamous or cuboidal. In mammals, endothelial cell has vimentin filaments and is derived from the mesoderm.
BTO:0001176
CALOHA:TS-0278
FMA:66772
endotheliocyte
From FMA: 9.07.2001: Endothelial cell has always been classified as a kind of epithelial cell, specifically a squamous cell but that is not true. First, endothelial cell can either be squamous or cuboidal (e.g. high-endothelial cell) and secondly, it has different embryological derivation (mesodermal) than a true epithelial cell (ectodermal and endodermal). The basis for present classification is the fact that it comprises the outermost layer or lining of anatomical structures (location-based) but a better structural basis for the differentia is the cytoskeleton of the cell. Endothelial cell has vimentin filaments while an epithelial cell has keratin filaments. [Onard].
endothelial cell
An endothelial cell comprises the outermost layer or lining of anatomical structures and can be squamous or cuboidal. In mammals, endothelial cell has vimentin filaments and is derived from the mesoderm.
GOC:tfm
MESH:D042783
PMID:21275341
http://en.wikipedia.org/wiki/Endothelial_cell
https://sourceforge.net/tracker/?func=detail&atid=440764&aid=3364936&group_id=36855
A non-neuronal cell of the nervous system. They not only provide physical support, but also respond to injury, regulate the ionic and chemical composition of the extracellular milieu. Guide neuronal migration during development, and exchange metabolites with neurons.
BTO:0002606
CALOHA:TS-0415
FMA:54536
https://cellxgene.cziscience.com/cellguide/CL_0000125
neuroglial cell
neuroglia
Not all glial cells develop from glioblasts, with microglia developing from the mesoderm instead. See https://github.com/obophenotype/cell-ontology/issues/1571
glial cell
A non-neuronal cell of the nervous system. They not only provide physical support, but also respond to injury, regulate the ionic and chemical composition of the extracellular milieu. Guide neuronal migration during development, and exchange metabolites with neurons.
MESH:D009457
Ectoderm destined to be nervous tissue.
neurectoderm cell
neurectodermal cell
Ectoderm destined to be nervous tissue.
GOC:tfm
ISBN:068340007X
A connective tissue cell that normally gives rise to other cells that are organized as three-dimensional masses. In humans, this cell type is CD73-positive, CD90-positive, CD105-positive, CD45-negative, CD34-negative, and MHCII-negative. They may further differentiate into osteoblasts, adipocytes, myocytes, neurons, or chondroblasts in vitro. Originally described as residing in the bone marrow, this cell type is now known to reside in many, if not all, adult organs.
BTO:0002625
BTO:0003298
FMA:70546
bone marrow stromal cells
colony-forming unit-fibroblast
marrow stromal cells
BMSC
CFU-F
MSC
mesenchymal precursor cell
mesenchymal progenitor cells
mesenchymal stem cell
mesenchymal stromal cell
mesenchymal stromal cells
stem cells, mesenchymal
Many but not all mesenchymal cells derive from the mesoderm. MSCs are reportedly CD3-negative, CD4-negative, CD5-negative, CD8-negative, CD11a-negative, CD11b-negative, CD14-negative, CD19-negative, CD29-positive, CD31-negative, CD34-negative, CD38-negative, CD40-negative, CD44-positive, CD45-negative, CD49-positive, CD54-positive, CD66b-negative, CD79a-negative, CD80-negative, CD102-positive, CD106-positive, CD117-positive, CD121a-positive, CD121b-positive, CD123-positive, CD124-positive, CD133-negative, CD146-positive, CD166-positive, CD271-positive, B220-negative, Gr1-negative, MHCI-positive, MHCII-negative, SSEA4-negative, sca1-positive, Ter119-negative, and glycophorin A-negative. Cultured MSCs are capable of producing stem cell factor, IL7, IL8, IL11, TGF-beta, cofilin, galectin-1, laminin-receptor 1, cyclophilin A, and MMP-2.
mesenchymal stem cell
https://github.com/obophenotype/cell-ontology/issues/474
true
A connective tissue cell that normally gives rise to other cells that are organized as three-dimensional masses. In humans, this cell type is CD73-positive, CD90-positive, CD105-positive, CD45-negative, CD34-negative, and MHCII-negative. They may further differentiate into osteoblasts, adipocytes, myocytes, neurons, or chondroblasts in vitro. Originally described as residing in the bone marrow, this cell type is now known to reside in many, if not all, adult organs.
FB:ma
GOC:dsd
PMCID:PMC2613570
PMID:10102814
PMID:16923606
PMID:17986482
PMID:19960544
http://en.wikipedia.org/wiki/Mesenchymal_stem_cell
http://www.copewithcytokines.de/cope.cgi?key=mesenchymal%20stem%20cells
marrow stromal cells
PMID:11378515
BMSC
CFU-F
MSC
PMID:11378515
mesenchymal progenitor cells
MESH:D044982
mesenchymal stromal cells
stem cells, mesenchymal
MESH:D044982
A fat-storing cell found mostly in the abdominal cavity and subcutaneous tissue of mammals. Fat is usually stored in the form of triglycerides.
BTO:0000443
CALOHA:TS-0012
FMA:63880
adipose cell
fat cell
adipocyte
A fat-storing cell found mostly in the abdominal cavity and subcutaneous tissue of mammals. Fat is usually stored in the form of triglycerides.
MESH:D017667
Skeletogenic cell that is terminally differentiated, secretes an avascular, GAG-rich matrix, is embedded in cartilage tissue matrix, retains the ability to divide, and develops from a chondroblast cell.
BTO:0000249
CALOHA:TS-0138
FMA:66782
cartilage cell
chondrocyte
Skeletogenic cell that is terminally differentiated, secretes an avascular, GAG-rich matrix, is embedded in cartilage tissue matrix, retains the ability to divide, and develops from a chondroblast cell.
GO_REF:0000034
MESH:D019902
A pigment cell is a cell that contains pigment granules.
VHOG:0001678
chromatocyte
chromatophore
pigment cell
A pigment cell is a cell that contains pigment granules.
GOC:tfm
pigment cell
visual pigment cell
An epithelial cell, located in a gland, that is specialised for the synthesis and secretion of specific biomolecules, such as hormones, or mucous.
CALOHA:TS-2085
FMA:86494
glandular epithelial cell
glandular secretory epithelial cell
An epithelial cell, located in a gland, that is specialised for the synthesis and secretion of specific biomolecules, such as hormones, or mucous.
GOC:tfm
ORCID:0000-0002-7073-9172
A cell that specializes in controlled release of one or more substances.
BTO:0003659
FMA:86916
secretory cell
A cell that specializes in controlled release of one or more substances.
GOC:tfm
ISBN:0721662544
A cell of an exocrine gland; i.e. a gland that discharges its secretion via a duct.
FMA:16014
exocrine cell
A cell of an exocrine gland; i.e. a gland that discharges its secretion via a duct.
ISBN:0198547684
A cell that secretes glycosaminoglycans.
GAG secreting cell
hyaluronic acid secreting cell
glycosaminoglycan secreting cell
A cell that secretes glycosaminoglycans.
GOC:tfm
Any secretory cell that is capable of some protein secretion.
protein secreting cell
Any secretory cell that is capable of some protein secretion.
FBC:Autogenerated
seromucus secreting cell
A cell of an endocrine gland, ductless glands that secrete substances which are released directly into the circulation and which influence metabolism and other body functions.
FMA:83809
endocrinocyte
endocrine cell
A cell of an endocrine gland, ductless glands that secrete substances which are released directly into the circulation and which influence metabolism and other body functions.
MESH:D055098
An endocrine cell that is located in the epithelium of the gastrointestinal tract or in the pancreas.
BTO:0003865
FMA:62930
MESH:D019858
https://cellxgene.cziscience.com/cellguide/CL_0000164
enteroendocrine cell
An endocrine cell that is located in the epithelium of the gastrointestinal tract or in the pancreas.
GOC:tfm
SANBI:mhl
A neuron that is capable of some hormone secretion in response to neuronal signals.
BTO:0002691
FMA:83810
neurosecretory cell
neurosecretory neuron
The neurosecretory cell is neither an ordinary neuron nor an endocrine cell, but a combination of both. Its neuronal features resemble those of ordinary neurons concerning both structure and function. The production of a visible secretory material marks the neurosecretory neuron as a gland cell, and the fact that extractable cellular products act in the manner of hormones places it in the realm of endocrine elements.
The modern definition of neurosecretion has evolved to include the release of any neuronal secretory product from a neuron.
neuroendocrine cell
A neuron that is capable of some hormone secretion in response to neuronal signals.
MESH:D055099
The neurosecretory cell is neither an ordinary neuron nor an endocrine cell, but a combination of both. Its neuronal features resemble those of ordinary neurons concerning both structure and function. The production of a visible secretory material marks the neurosecretory neuron as a gland cell, and the fact that extractable cellular products act in the manner of hormones places it in the realm of endocrine elements.
The modern definition of neurosecretion has evolved to include the release of any neuronal secretory product from a neuron.
PMID:5342440
https://www.clinicalkey.com/#!/content/book/3-s2.0-B9780323555968000073
Any secretory cell that is capable of some peptide hormone secretion.
peptide hormone secreting cell
Any secretory cell that is capable of some peptide hormone secretion.
FBC:Autogenerated
Any secretory cell that is capable of some insulin secretion.
BTO:0000783
insulin secreting cell
Any secretory cell that is capable of some insulin secretion.
FBC:Autogenerated
A cell that secretes insulin and is located towards the center of the islets of Langerhans.
beta cell
BTO:0000783
EV:0200009
FMA:70586
MA:0002419
ncithesaurus:Beta_Cell
B-cell of pancreatic islet
beta cell of pancreatic islet
insulin-secreting cell
pancreatic B cell
pancreatic B-cell
pancreatic beta cell
pancreatic islet core
type B enteroendocrine cell
beta cell islet
Pancreatic beta cells are also reportedly CD284-positive. Upon activation, they upregulate their CD14 expression.
type B pancreatic cell
true
A cell that secretes insulin and is located towards the center of the islets of Langerhans.
GOC:tfm
ISBN:0517223651
http://en.wikipedia.org/wiki/Pancreatic_b_cell
beta cell
ZFA:0009102
B-cell of pancreatic islet
FMA:70586
beta cell of pancreatic islet
FMA:70586
insulin-secreting cell
FMA:70586
pancreatic B-cell
FMA:70586
pancreatic beta cell
FMA:70586
pancreatic islet core
MA:0002419
type B enteroendocrine cell
FMA:70586
beta cell islet
MA:0002419
A cell that secretes glucagon.
FMA:84045
glucagon-secreting cell
glucagon secreting cell
A cell that secretes glucagon.
GOC:tfm
A type of enteocrine cell found in the periphery of the islets of Langerhans that secretes glucagon.
BTO:0000990
FMA:70585
MESH:D050416
alpha cell of islet of Langerhans
pancreatic alpha cell
pancreatic A cell
A type of enteocrine cell found in the periphery of the islets of Langerhans that secretes glucagon.
GOC:tfm
ISBN:0721662544
Any secretory cell that is capable of some somatostatin secretion.
somatostatin secreting cell
Any secretory cell that is capable of some somatostatin secretion.
FBC:Autogenerated
A D cell located in the pancreas. Peripherally placed within the islets like type A cells; contains somatostatin.
BTO:0000803
FMA:70587
D-cell of pancreatic islet
delta cell of islet
delta cell of pancreatic islet
pancreatic D-cell
pancreatic delta cell
somatostatin-secreting pancreatic cell
pancreatic D cell
A D cell located in the pancreas. Peripherally placed within the islets like type A cells; contains somatostatin.
FMA:0517223651
GOC:tfm
Any secretory cell that is capable of some steroid hormone secretion.
steroid hormone secreting cell
Any secretory cell that is capable of some steroid hormone secretion.
FBC:Autogenerated
The main structural component of the liver. They are specialized epithelial cells that are organized into interconnected plates called lobules. Majority of cell population of liver, polygonal in shape, arranged in plates or trabeculae between sinusoids; may have single nucleus or binucleated.
BTO:0000575
CALOHA:TS-0454
FMA:14515
https://cellxgene.cziscience.com/cellguide/CL_0000182
Hepatocytes are reportedly MHC Class I-positive and MHC Class II-positive.
hepatocyte
The main structural component of the liver. They are specialized epithelial cells that are organized into interconnected plates called lobules. Majority of cell population of liver, polygonal in shape, arranged in plates or trabeculae between sinusoids; may have single nucleus or binucleated.
GOC:tfm
ISBN:0412046911
MESH:D022781
PMID:19717280
http://en.wikipedia.org/wiki/Hepatocyte
A cell whose primary function is to shorten.
contractile cell
A cell whose primary function is to shorten.
FB:ma
A mature contractile cell, commonly known as a myocyte. This cell has as part of its cytoplasm myofibrils organized in various patterns.
BTO:0000888
BTO:0000902
CALOHA:TS-2032
FMA:67328
WBbt:0003675
muscle fiber
myocyte
muscle cell
https://www.swissbiopics.org/api/image/Muscle_cells.svg
A mature contractile cell, commonly known as a myocyte. This cell has as part of its cytoplasm myofibrils organized in various patterns.
MESH:D032342
A somatic cell located in skeletal muscle.
BTO:0004392
CALOHA:TS-2158
FMA:9727
https://cellxgene.cziscience.com/cellguide/CL_0000188
skeletal muscle cell
cell of skeletal muscle
A somatic cell located in skeletal muscle.
GOC:tfm
A non-striated, elongated, spindle-shaped cell found lining the digestive tract, uterus, and blood vessels. They develop from specialized myoblasts (smooth muscle myoblast).
non-striated muscle cell
BTO:0004576
CALOHA:TS-2159
FMA:14072
https://cellxgene.cziscience.com/cellguide/CL_0000192
SMCs
myocytes, smooth muscle
smooth muscle fiber
smooth muscle cell
A non-striated, elongated, spindle-shaped cell found lining the digestive tract, uterus, and blood vessels. They develop from specialized myoblasts (smooth muscle myoblast).
MESH:D032389
PMID:9315361
http://en.wikipedia.org/wiki/Smooth_muscle_cell
SMCs
PMID:9315361
myocytes, smooth muscle
MESH:D032389
A cell that is capable of detection of a stimulus involved in sensory perception.
MESH:D011984
receptor cell
sensory receptor cell
A cell specialized to detect chemical substances and relay that information centrally in the nervous system. Chemoreceptors may monitor external stimuli, as in taste and olfaction, or internal stimuli, such as the concentrations of oxygen and carbon dioxide in the blood.
chemoreceptor cell
A cell specialized to detect chemical substances and relay that information centrally in the nervous system. Chemoreceptors may monitor external stimuli, as in taste and olfaction, or internal stimuli, such as the concentrations of oxygen and carbon dioxide in the blood.
MESH:D002628
A cell specialized in detecting light stimuli that are involved in visual perception.
BTO:0001060
CALOHA:TS-0868
FMA:86740
photoreceptor cell
https://www.swissbiopics.org/api/image/Photoreceptor_cell.svg
A cell specialized in detecting light stimuli that are involved in visual perception.
MESH:D010786
A cell whose function is determined by the generation or the reception of an electric signal.
electrically active cell
A cell whose function is determined by the generation or the reception of an electric signal.
FB:ma
A cell within an epithelial cell sheet whose main function is to act as an internal or external covering for a tissue or an organism.
boundary cell
lining cell
A cell within an epithelial cell sheet whose main function is to act as an internal or external covering for a tissue or an organism.
JB:jb
A cell located in the synovial joint.
CALOHA:TS-0995
synoviocyte
synovial cell
true
A cell whose primary function is to prevent the transport of stuff across compartments.
barrier cell
A cell whose primary function is to prevent the transport of stuff across compartments.
JB:jb
A cell that moves by its own activities.
motile cell
A cell that moves by its own activities.
FB:ma
A cell of the outer of the three germ layers of the embryo.
FMA:72549
ectoderm cell
ectodermal cell
A cell of the outer of the three germ layers of the embryo.
MESH:D004475
A cell of the middle germ layer of the embryo.
FMA:72554
https://cellxgene.cziscience.com/cellguide/CL_0000222
mesoblast
mesoderm cell
mesodermal cell
A cell of the middle germ layer of the embryo.
MESH:D008648
A cell of the inner of the three germ layers of the embryo.
FMA:72555
endoderm cell
endodermal cell
A cell of the inner of the three germ layers of the embryo.
MESH:D004707
A cell that lacks a nucleus.
FMA:68647
non-nucleated cell
anucleate cell
A cell that lacks a nucleus.
FB:ma
A cell with a single nucleus.
single nucleate cell
A cell with a single nucleus.
FB:ma
GOC:tfm
Any cell that has characteristic some binucleate.
binucleate cell
Any cell that has characteristic some binucleate.
FBC:Autogenerated
A cell with more than one nucleus.
multinucleated cells
polynuclear cells
multinucleate cell
A cell with more than one nucleus.
FB:ma
Wikipedia:Multinucleate
multinucleated cells
Wikipedia:Multinucleate
polynuclear cells
Wikipedia:Multinucleate
A red blood cell. In mammals, mature erythrocytes are biconcave disks containing hemoglobin whose function is to transport oxygen.
BTO:0000424
CALOHA:TS-0290
FMA:81100
RBC
red blood cell
erythrocyte
true
A red blood cell. In mammals, mature erythrocytes are biconcave disks containing hemoglobin whose function is to transport oxygen.
GOC:tfm
MESH:D004912
Any cell that in taxon some Eukaryota.
MESH:D005057
eukaryotic cell
Any cell that in taxon some Eukaryota.
FBC:Autogenerated
Any cell that in taxon some Eumycetozoa.
Eumycetozoan cell
Any cell that in taxon some Eumycetozoa.
FBC:Autogenerated
Any photoreceptor cell that is part of some eye.
eye photoreceptor cell
Any photoreceptor cell that is part of some eye.
FBC:Autogenerated
A cell whose primary function is to provide structural support, to provide strength and physical integrity to the organism.
structural cell
A cell whose primary function is to provide structural support, to provide strength and physical integrity to the organism.
TAIR:sr
A mature sexual reproductive cell having a single set of unpaired chromosomes.
CALOHA:TS-0395
FMA:18649
https://cellxgene.cziscience.com/cellguide/CL_0000300
haploid nucleated cell
haploid germ cell
gamete
true
A mature sexual reproductive cell having a single set of unpaired chromosomes.
GOC:tfm
ISBN:0721662544
lens cell
crystallin accumulating cell
An epithelial cell found in the trachea.
FMA:74793
tracheocyte
This class is for the vertebrate tracheal structure. For the analagous insect cell type, see 'respiratory tube epithelial cell'
tracheal epithelial cell
true
An epithelial cell found in the trachea.
GOC:tfm
Columnar glandular cell with irregular nucleus, copious granular endoplasmic reticulum and supranuclear granules. Secretes a watery fluid containing proteins known as serous fluid.
BTO:0003687
FMA:62511
serous cell
serous secreting cell
Columnar glandular cell with irregular nucleus, copious granular endoplasmic reticulum and supranuclear granules. Secretes a watery fluid containing proteins known as serous fluid.
GOC:tfm
ISBN:0517223651
ISBN:0721662544
Any cell that is capable of some mucus secretion.
BTO:0003689
mucous cell
mucus secreting cell
Any cell that is capable of some mucus secretion.
FBC:Autogenerated
A cell that is specialised to accumulate a particular substance(s).
stuff accumulating cell
A cell that is specialised to accumulate a particular substance(s).
FB:ma
extracellular matrix secreting cell
Any cell that is capable of some oxygen transport.
oxygen accumulating cell
Any cell that is capable of some oxygen transport.
FBC:Autogenerated
A cell derived from the specialized ectoderm flanking each side of the embryonic neural plate, which after the closure of the neural tube, forms masses of cells that migrate out from the dorsal aspect of the neural tube to spread throughout the body.
FMA:86667
migratory neural crest cell
A cell derived from the specialized ectoderm flanking each side of the embryonic neural plate, which after the closure of the neural tube, forms masses of cells that migrate out from the dorsal aspect of the neural tube to spread throughout the body.
doi:10.1016/j.stem.2015.02.017
A mesenchymal cell in embryonic development found in a contracting mass and that gives rise to osteoprogenitors.
mesenchyme condensation cell
A mesenchymal cell in embryonic development found in a contracting mass and that gives rise to osteoprogenitors.
GOC:tfm
PMID:5025404
A cell of the sclera of the eye.
scleral cell
A cell of the sclera of the eye.
GOC:add
A structural cell that is part of optic choroid.
choroidal cell of the eye
A structural cell that is part of optic choroid.
GOC:add
Any cell that is part of some extraembryonic structure.
extraembryonic cell
Any cell that is part of some extraembryonic structure.
FBC:Autogenerated
An extraembryonic cell that develops from a trophectodermal cell. This cell is found in the outer layer of the blastocyst and can invade other structures in the uterus once the blastocyst implants into the uterine wall. A trophoblast cell is involved in the implantation of the embryo into the uterine wall, placental formation, remodelling of maternal vasculature in the uterus, nutrient and gas exchange, hormone production, and immune modulation to support fetal development.
FMA:83028
https://cellxgene.cziscience.com/cellguide/CL_0000351
trophoblastic cell
trophoblast cell
true
An extraembryonic cell that develops from a trophectodermal cell. This cell is found in the outer layer of the blastocyst and can invade other structures in the uterus once the blastocyst implants into the uterine wall. A trophoblast cell is involved in the implantation of the embryo into the uterine wall, placental formation, remodelling of maternal vasculature in the uterus, nutrient and gas exchange, hormone production, and immune modulation to support fetal development.
GOC:tfm
MESH:D014327
PMID:37630754
doi:10.1007/978-3-030-84725-8
trophoblastic cell
doi:10.1007/978-3-030-84725-8
A cell of the outer layer of a blastula that gives rise to the ectoderm after gastrulation.
epiblast cell
A cell of the outer layer of a blastula that gives rise to the ectoderm after gastrulation.
GOC:tfm
ISBN:0618947256
An undifferentiated cell produced by early cleavages of the fertilized egg (zygote).
BTO:0001473
FMA:72551
blastomere
blastoderm cell
An undifferentiated cell produced by early cleavages of the fertilized egg (zygote).
MESH:D001756
A multifate stem cell found in skeletal muscle than can differentiate into many different cell types, including muscle. Distinct cell type from satellite cell.
FMA:86767
Multi-potency demonstrated ex vivo. At the time of writing, it is unclear whether the endogenous population differentiates into multiple cell types in vivo.
multi-potent skeletal muscle stem cell
true
A multifate stem cell found in skeletal muscle than can differentiate into many different cell types, including muscle. Distinct cell type from satellite cell.
PMID:18282570
A smooth muscle cell that is part of a sphincter. A sphincter is a typically circular muscle that normally maintains constriction of a natural body passage or orifice and which relaxes as required by normal physiological functioning.
https://cellxgene.cziscience.com/cellguide/CL_0000358
sphincter associated smooth muscle cell
true
A smooth muscle cell that is part of a sphincter. A sphincter is a typically circular muscle that normally maintains constriction of a natural body passage or orifice and which relaxes as required by normal physiological functioning.
GOC:cjm
A smooth muscle cell associated with the vasculature.
https://cellxgene.cziscience.com/cellguide/CL_0000359
VSMC
vascular smooth muscle cell
vascular associated smooth muscle cell
true
A smooth muscle cell associated with the vasculature.
GOC:dsd
GOC:tfm
An epithelial cell of the integument (the outer layer of an organism).
BTO:0001470
CALOHA:TS-0283
FMA:62411
MESH:D000078404
cell of epidermis
epithelial cell of skin
epidermal cell
An epithelial cell of the integument (the outer layer of an organism).
Flybase:dsj
MA:ma
cell of epidermis
FMA:62411
epithelial cell of skin
FMA:62411
Diploid cell produced by the fusion of sperm cell nucleus and egg cell.
zygote
BTO:0000854
EHDAA2:0004546
FMA:72395
animal zygote
Diploid cell produced by the fusion of sperm cell nucleus and egg cell.
ISBN:0471245208
tracheoblast
A cell whose function is determined by its response to an electric signal.
electrically responsive cell
A cell whose function is determined by its response to an electric signal.
FB:ma
Any interneuron that has its soma located in some ganglion.
ganglion interneuron
true
Any interneuron that has its soma located in some ganglion.
FBC:Autogenerated
A cell that initiates an electrical signal and passes that signal to another cell.
electrically signaling cell
A cell that initiates an electrical signal and passes that signal to another cell.
FB:ma
A cell that contains more than two haploid sets of chromosomes.
polyploid cell
A cell that contains more than two haploid sets of chromosomes.
FB:ma
PMID:32646579
https://bio.libretexts.org/Bookshelves/Introductory_and_General_Biology/Biology_(Kimball)/07%3A_Cell_Division/7.04%3A_Polyploidy
A cell whose nucleus contains a single haploid genome.
haploid cell
A cell whose nucleus contains a single haploid genome.
FB:ma
GOC:tfm
endopolyploid cell
carbohydrate secreting cell
biogenic amine secreting cell
A cell type that secretes 5-Hydroxytryptamine (serotonin).
5-HT secreting cell
5-Hydroxytryptamine secreting cell
serotonin secreting cell
A cell type that secretes 5-Hydroxytryptamine (serotonin).
GOC:tfm
PMID:19630576
A cell capable of producting norepiniphrine. Norepiniphrine is a catecholamine with multiple roles including as a hormone and a neurotransmitter. In addition, epiniphrine is synthesized from norepiniphrine by the actions of the phenylethanolamine N-methyltransferase enzyme.
noradrenaline secreting cell
norepinephrin secreting cell
norepinephrine secreting cell
noradrenergic cell
A cell capable of producting norepiniphrine. Norepiniphrine is a catecholamine with multiple roles including as a hormone and a neurotransmitter. In addition, epiniphrine is synthesized from norepiniphrine by the actions of the phenylethanolamine N-methyltransferase enzyme.
GOC:tfm
ISBN:068340007X
A photoreceptor cell that detects visible light.
visible light photoreceptor cell
A photoreceptor cell that detects visible light.
GOC:tfm
A connective tissue cell of an organ found in the loose connective tissue.
BTO:0002064
FMA:83624
stromal cell
A connective tissue cell of an organ found in the loose connective tissue.
GOC:tfm
MESH:D017154
A cell found throughout the gastrointestinal tract and in the pancreas. They secrete somatostatin in both an endocrine and paracrine manner. Somatostatin inhibits gastrin, cholecystokinin, insulin, glucagon, pancreatic enzymes, and gastric hydrochloric acid. A variety of substances which inhibit gastric acid secretion (vasoactive intestinal peptide, calcitonin gene-related peptide, cholecystokinin, beta-adrenergic agonists, and gastric inhibitory peptide) are thought to act by releasing somatostatin.
FMA:62935
https://cellxgene.cziscience.com/cellguide/CL_0000502
D cell
type D enteroendocrine cell
A cell found throughout the gastrointestinal tract and in the pancreas. They secrete somatostatin in both an endocrine and paracrine manner. Somatostatin inhibits gastrin, cholecystokinin, insulin, glucagon, pancreatic enzymes, and gastric hydrochloric acid. A variety of substances which inhibit gastric acid secretion (vasoactive intestinal peptide, calcitonin gene-related peptide, cholecystokinin, beta-adrenergic agonists, and gastric inhibitory peptide) are thought to act by releasing somatostatin.
MESH:D019864
An endorphine cell that secretes enkephalin.
enkephalin secreting cell
An endorphine cell that secretes enkephalin.
GO:tfm
A peptide hormone secreting cell that secretes endorphin.
endorphin secreting cell
A peptide hormone secreting cell that secretes endorphin.
GO:tfm
An endocrine cell found in the stomach and duodenum and is responsible for the secretion of gastrin and enkephalin. Most abundant in pyloric antrum, pyramidal in form with a narrow apex bearing long microvilli.
BTO:0004108
FMA:67609
G cell
type G enteroendocrine cell
An endocrine cell found in the stomach and duodenum and is responsible for the secretion of gastrin and enkephalin. Most abundant in pyloric antrum, pyramidal in form with a narrow apex bearing long microvilli.
GOC:tfm
ISBN:0517223651
MESH:D019863
PMID:10700044
PMID:35674015
PMID:37240181
A peptide hormone secreting cell that secretes gastrin.
gastrin secreting cell
A peptide hormone secreting cell that secretes gastrin.
GO:tfm
A precursor cell destined to differentiate into cardiac muscle cell.
FMA:84797
cardiac muscle progenitor cell
cardiomyocyte progenitor cell
cardiac muscle myoblast
A precursor cell destined to differentiate into cardiac muscle cell.
GOC:tfm
MESH:D032386
A precursor cell destined to differentiate into smooth muscle myocytes.
FMA:84798
https://cellxgene.cziscience.com/cellguide/CL_0000514
myoblast, smooth muscle
satellite cell
smooth muscle myoblast
A precursor cell destined to differentiate into smooth muscle myocytes.
GOC:tfm
MESH:D032390
myoblast, smooth muscle
MESH:D032390
A myoblast that differentiates into skeletal muscle fibers.
FMA:84799
skeletal myoblast
skeletal muscle myoblast
A myoblast that differentiates into skeletal muscle fibers.
SANBI:mhl
Any cell that in taxon some Fungi.
fungal cell
Any cell that in taxon some Fungi.
FBC:Autogenerated
A cell from the outer syncytial layer of the trophoblast of an early mammalian embryo, directly associated with the maternal blood supply. It secretes hCG in order to maintain progesterone secretion and sustain a pregnancy.
FMA:83043
syncytial trophoblast cell
syncytiotrophoblastic cell
plasmidotrophoblast cell
syntrophoblast cell
syncytiotrophoblast cell
https://github.com/obophenotype/cell-ontology/issues/2100
A cell from the outer syncytial layer of the trophoblast of an early mammalian embryo, directly associated with the maternal blood supply. It secretes hCG in order to maintain progesterone secretion and sustain a pregnancy.
GOC:tfm
ISBN:0323052908
syncytial trophoblast cell
PMID:11787150
syncytiotrophoblastic cell
PMID:21733368
A neuron which conveys sensory information centrally from the periphery.
FMA:87653
input neuron
afferent neuron
A neuron which conveys sensory information centrally from the periphery.
GOC:tfm
MESH:D009475
A neuron which sends impulses peripherally to activate muscles or secretory cells.
output neuron
efferent neuron
A neuron which sends impulses peripherally to activate muscles or secretory cells.
MESH:D009476
The basic cellular unit of nervous tissue. Each neuron consists of a body, an axon, and dendrites. Their purpose is to receive, conduct, and transmit impulses in the nervous system.
BTO:0000938
CALOHA:TS-0683
FMA:54527
VHOG:0001483
WBbt:0003679
nerve cell
These cells are also reportedly CD4-negative and CD200-positive. They are also capable of producing CD40L and IFN-gamma.
neuron
https://www.swissbiopics.org/api/image/Neuron_cells.svg
The basic cellular unit of nervous tissue. Each neuron consists of a body, an axon, and dendrites. Their purpose is to receive, conduct, and transmit impulses in the nervous system.
MESH:D009474
http://en.wikipedia.org/wiki/Neuron
An immature, nucleated erythrocyte occupying the stage of erythropoeisis that follows formation of erythroid progenitor cells. This cell is CD71-positive, has both a nucleus and a nucleolus, and lacks hematopoeitic lineage markers.
FMA:83518
rubriblast
pronormoblast
proerythroblast
true
An immature, nucleated erythrocyte occupying the stage of erythropoeisis that follows formation of erythroid progenitor cells. This cell is CD71-positive, has both a nucleus and a nucleolus, and lacks hematopoeitic lineage markers.
ISBN:0721601464
PMID:1638021
rubriblast
ISBN:0721601464
A nucleated immature erythrocyte, having cytoplasm generally similar to that of the earlier proerythroblast but sometimes even more basophilic, and usually regular in outline. The nucleus is still relatively large, but the chromatin strands are thicker and more deeply staining, giving a coarser appearance; the nucleoli have disappeared. This cell is CD71-positive and lacks hematopoeitic lineage markers.
FMA:83505
basophilic normoblast
early erythroblast
early normoblast
prorubricyte
basophilic erythroblast
true
A nucleated immature erythrocyte, having cytoplasm generally similar to that of the earlier proerythroblast but sometimes even more basophilic, and usually regular in outline. The nucleus is still relatively large, but the chromatin strands are thicker and more deeply staining, giving a coarser appearance; the nucleoli have disappeared. This cell is CD71-positive and lacks hematopoeitic lineage markers.
GOC:tfm
ISBN:0721601464
basophilic normoblast
ISBN:0721601464
early erythroblast
ISBN:0721601464
early normoblast
ISBN:0721601464
prorubricyte
ISBN:0721601464
A nucleated, immature erythrocyte in which the nucleus occupies a relatively smaller part of the cell than in its precursor, the basophilic erythroblast. The cytoplasm is beginning to acquire hemoglobin and thus is no longer a purely basophilic, but takes on acidophilic aspects, which becomes progressively more marked as the cell matures. The chromatin of the nucleus is arranged in coarse, deeply staining clumps. This cell is CD71-positive and lacks hematopoeitic lineage markers.
FMA:83506
intermediate erythroblast
intermediate normoblast
polychromatic erythroblast
polychromatic normoblast
polychromatophilic normoblast
rubricyte
polychromatophilic erythroblast
true
A nucleated, immature erythrocyte in which the nucleus occupies a relatively smaller part of the cell than in its precursor, the basophilic erythroblast. The cytoplasm is beginning to acquire hemoglobin and thus is no longer a purely basophilic, but takes on acidophilic aspects, which becomes progressively more marked as the cell matures. The chromatin of the nucleus is arranged in coarse, deeply staining clumps. This cell is CD71-positive and lacks hematopoeitic lineage markers.
ISBN:0721601464
intermediate erythroblast
ISBN:0721601464
intermediate normoblast
ISBN:0721601464
polychromatic erythroblast
ISBN:0721601464
polychromatic normoblast
ISBN:0721601464
polychromatophilic normoblast
ISBN:0721601464
rubricyte
ISBN:0721601464
The final stage of the nucleated, immature erythrocyte, before nuclear loss. Typically the cytoplasm is described as acidophilic, but it still shows a faint polychromatic tint. The nucleus is small and initially may still have coarse, clumped chromatin, as in its precursor, the polychromatophilic erythroblast, but ultimately it becomes pyknotic, and appears as a deeply staining, blue-black, homogeneous structureless mass. The nucleus is often eccentric and sometimes lobulated.
FMA:84646
acidophilic erythroblast
eosinophilic erythroblast
late erythoblast
orthochromatic normoblast
pyknotic eto enrythroblast
orthochromatic erythroblast
true
The final stage of the nucleated, immature erythrocyte, before nuclear loss. Typically the cytoplasm is described as acidophilic, but it still shows a faint polychromatic tint. The nucleus is small and initially may still have coarse, clumped chromatin, as in its precursor, the polychromatophilic erythroblast, but ultimately it becomes pyknotic, and appears as a deeply staining, blue-black, homogeneous structureless mass. The nucleus is often eccentric and sometimes lobulated.
ISBN:0721601464
acidophilic erythroblast
ISBN:0721601464
eosinophilic erythroblast
ISBN:0721601464
orthochromatic normoblast
ISBN:0721601464
pyknotic eto enrythroblast
ISBN:0721601464
The earliest cytologically identifiable precursor in the thrombocytic series. This cell is capable of endomitosis and lacks expression of hematopoieitic lineage markers (lin-negative).
BTO:0001164
CALOHA:TS-0610
FMA:84235
MESH:D055016
CFU-Meg
Meg-CFC
MkP
colony-forming unit-megakaryocyte
megacaryoblast
megacaryocyte progenitor cell
megakaryoblast
megakaryocytic progenitor cell
promegacaryocyte
promegakaryocyte
Lineage negative is described here as CD2-negative, CD3-negative, CD4-negative, CD5-negative, CD8a-negative, CD14-negative, CD19-negative, CD20-negative, CD56-negative, Ly6g-negative, and Ter119-negative.
megakaryocyte progenitor cell
true
The earliest cytologically identifiable precursor in the thrombocytic series. This cell is capable of endomitosis and lacks expression of hematopoieitic lineage markers (lin-negative).
GOC:dsd
GOC:tfm
ISBN:0721601464
CFU-Meg
PMID:11722431
PMID:12482498
Meg-CFC
PMCID:PMC1794060
MkP
PMID:21116988
megakaryocytic progenitor cell
PMID:12482498
A large hematopoietic cell (50 to 100 micron) with a lobated nucleus. Once mature, this cell undergoes multiple rounds of endomitosis and cytoplasmic restructuring to allow platelet formation and release.
BTO:0000843
CALOHA:TS-0611
FMA:83555
megacaryocyte
megalocaryocyte
megalokaryocyte
Megakaryocytes are reportedly CD181-positive and CD182-positive.
megakaryocyte
true
A large hematopoietic cell (50 to 100 micron) with a lobated nucleus. Once mature, this cell undergoes multiple rounds of endomitosis and cytoplasmic restructuring to allow platelet formation and release.
ISBN:0721601464
MESH:D008533
PMID:31043076
http://en.wikipedia.org/wiki/Megakaryocyte
An immature erythrocyte that changes the protein composition of its plasma membrane by exosome formation and extrusion. The types of protein removed differ between species though removal of the transferrin receptor is apparent in mammals and birds.
BTO:0001173
CALOHA:TS-0864
MESH:D012156
reticulocyte
true
An immature erythrocyte that changes the protein composition of its plasma membrane by exosome formation and extrusion. The types of protein removed differ between species though removal of the transferrin receptor is apparent in mammals and birds.
GOC:add
GOC:tfm
PMID:15946868
PMID:2037622
An erythrocyte having a nucleus.
RBC
red blood cell
nucleate erythrocyte
true
An erythrocyte having a nucleus.
GOC:add
GOc:tfm
A mesenchymal stem cell capable of developing into blood vessel endothelium.
angioblast
chondroplast
These cells are reportedly CD31-positive, CD34-positive, CD144-positive, CD309-positive, and TAL1-positive.
angioblastic mesenchymal cell
true
A mesenchymal stem cell capable of developing into blood vessel endothelium.
GOC:dsd
GOC:tfm
PMID:12768659
A mesenchymal cell found in the developing heart and that develops into some part of the heart. These cells derive from intra- and extra-cardiac sources, including the endocardium, epicardium, neural crest, and second heart field.
cardiac mesenchymal cell
A mesenchymal cell found in the developing heart and that develops into some part of the heart. These cells derive from intra- and extra-cardiac sources, including the endocardium, epicardium, neural crest, and second heart field.
PMID:18816864
One of the two photoreceptor cell types in the vertebrate retina. In cones the photopigment is in invaginations of the cell membrane of the outer segment. Cones are less sensitive to light than rods, but they provide vision with higher spatial and temporal acuity, and the combination of signals from cones with different pigments allows color vision.
BTO:0001036
CALOHA:TS-0866
FMA:67748
cone
retinal cone cell
One of the two photoreceptor cell types in the vertebrate retina. In cones the photopigment is in invaginations of the cell membrane of the outer segment. Cones are less sensitive to light than rods, but they provide vision with higher spatial and temporal acuity, and the combination of signals from cones with different pigments allows color vision.
MESH:D017949
cone
doi:10.1038/s41598-020-66092-9
An epithelial cell of the cornea.
BTO:0004298
CALOHA:TS-0173
FMA:70551
epithelial cell of cornea
corneal epithelial cell
An epithelial cell of the cornea.
GOC:tfm
epithelial cell of cornea
FMA:70551
The reproductive cell in multicellular organisms.
BTO:0000535
NCIT:C12597
VHOG:0001534
WBbt:0006796
germ cell
true
The reproductive cell in multicellular organisms.
MESH:D005854
A steroid hormone secreting cell that secretes androgen.
androgen secreting cell
A steroid hormone secreting cell that secretes androgen.
GOC:tfm
One of the two photoreceptor cell types of the vertebrate retina. In rods the photopigment is in stacks of membranous disks separate from the outer cell membrane. Rods are more sensitive to light than cones, but rod mediated vision has less spatial and temporal resolution than cone vision.
BTO:0001024
CALOHA:TS-0870
FMA:67747
rod
retinal rod cell
One of the two photoreceptor cell types of the vertebrate retina. In rods the photopigment is in stacks of membranous disks separate from the outer cell membrane. Rods are more sensitive to light than cones, but rod mediated vision has less spatial and temporal resolution than cone vision.
MESH:D017948
rod
doi:10.1038/s41598-020-66092-9
A secretory cell that is grouped together with other cells of the same type to form grape shaped clusters known as acini (singular acinus).
FMA:83625
MESH:D061354
https://cellxgene.cziscience.com/cellguide/CL_0000622
acinic cell
acinous cell
acinar cell
A secretory cell that is grouped together with other cells of the same type to form grape shaped clusters known as acini (singular acinus).
GOC:tfm
http://www.copewithcytokines.de
A cell whose primary function is to support other cell types.
BTO:0002315
supportive cell
supporting cell
A cell whose primary function is to support other cell types.
FB:ma
GOC:tfm
An endothelial cell that has small pores, or fenestrations, which allow for the efficient exchange of substances between the blood and surrounding tissues.
https://cellxgene.cziscience.com/cellguide/CL_0000666
window cell
fenestrated endothelial cell
An endothelial cell that has small pores, or fenestrations, which allow for the efficient exchange of substances between the blood and surrounding tissues.
DOI:10.1007/978-3-211-99390-3_133
An extracellular matrix secreting cell that secretes collagen.
collagen secreting cell
An extracellular matrix secreting cell that secretes collagen.
GOC:tfm
A primordial germ cell is a diploid germ cell precursors that transiently exist in the embryo before they enter into close association with the somatic cells of the gonad and become irreversibly committed as germ cells.
FMA:70567
gonocyte
primitive germ cell
primordial germ cell
true
true
A primordial germ cell is a diploid germ cell precursors that transiently exist in the embryo before they enter into close association with the somatic cells of the gonad and become irreversibly committed as germ cells.
GOC:tfm
PMID:1381289
A mature sexual reproductive cell of the female germline.
female gamete
true
A mature sexual reproductive cell of the female germline.
GOC:tfm
A non-terminally differentiated cell that is capable of developing into a muscle cell.
muscle precursor cell
A non-terminally differentiated cell that is capable of developing into a muscle cell.
GOC:add
A cell that stores and secretes pancreatic polypeptide hormone.
FMA:62938
FMA:83409
https://cellxgene.cziscience.com/cellguide/CL_0000696
type F enteroendocrine cell
PP cell
A cell that stores and secretes pancreatic polypeptide hormone.
GOC:tfm
JB:jb
PMID:15153415
Epithelial cells derived from neural plate and neural crest.
neuroepithelial cell
BTO:0004301
FMA:70557
The term "neuroepithelial cell" is used to describe both this cell type and sensory epithelial cell (CL:0000098).
neurecto-epithelial cell
Epithelial cells derived from neural plate and neural crest.
GOC:tfm
A stem cell that can give rise to cell types of the body other than those of the germ-line.
CALOHA:TS-2086
MESH:D053687
somatic stem cell
A stem cell that can give rise to cell types of the body other than those of the germ-line.
GO:0048103
Muscle cell which has as its direct parts myofilaments organized into sarcomeres.
BTO:0002916
CALOHA:TS-2157
FMA:86936
striated muscle cell
Muscle cell which has as its direct parts myofilaments organized into sarcomeres.
GOC:tfm
ISBN:0721662544
An achromatic cell of the myeloid or lymphoid lineages capable of ameboid movement, found in blood or other tissue.
BTO:0000751
CALOHA:TS-0549
FMA:62852
MESH:D007962
NCIT:C12529
leucocyte
white blood cell
immune cell
leukocyte
true
An achromatic cell of the myeloid or lymphoid lineages capable of ameboid movement, found in blood or other tissue.
GOC:add
GOC:tfm
ISBN:978-0-323-05290-0
The set of neurons that receives neural inputs via bipolar, horizontal and amacrine cells. The axons of these cells make up the optic nerve.
BTO:0001800
FMA:67765
MESH:D012165
gangliocyte
ganglion cell of retina
RGC
RGCs
retinal ganglion cell
The set of neurons that receives neural inputs via bipolar, horizontal and amacrine cells. The axons of these cells make up the optic nerve.
GOC:dph
RGC
doi:10.1038/s41598-020-66092-9
RGCs
doi:10.1038/s41598-020-66092-9
Cardiac muscle cells are striated muscle cells that are responsible for heart contraction. In mammals, the contractile fiber resembles those of skeletal muscle but are only one third as large in diameter, are richer in sarcoplasm, and contain centrally located instead of peripheral nuclei.
cardiocyte
BTO:0001539
CALOHA:TS-0115
FMA:14067
MESH:D032383
https://cellxgene.cziscience.com/cellguide/CL_0000746
cardiac muscle fiber
cardiac myocyte
cardiomyocyte
heart muscle cell
This class encompasses the muscle cells responsible for heart* contraction in both vertebrates and arthropods. The ultrastucture of a wide range of arthropod heart cells has been examined including spiders, horseshoe crabs, crustaceans (see Sherman, 1973 and refs therein) and insects (see Lehmacher et al (2012) and refs therein). According to these refs, the cells participating in heart contraction in all cases are transversely striated. Insects hearts additionally contain ostial cells, also transversely striated muscle cells, but which do not participate in heart contraction.
cardiac muscle cell
Cardiac muscle cells are striated muscle cells that are responsible for heart contraction. In mammals, the contractile fiber resembles those of skeletal muscle but are only one third as large in diameter, are richer in sarcoplasm, and contain centrally located instead of peripheral nuclei.
GOC:mtg_cardiacconduct_nov11
GOC:tfm
ISBN:0323052908
PMID:22426062
PMID:4711263
cardiac muscle fiber
GO:0048739
A cell of the monocyte, granulocyte, mast cell, megakaryocyte, or erythroid lineage.
BTO:0001441
CALOHA:TS-0647
MESH:D022423
myeloid cell
true
A cell of the monocyte, granulocyte, mast cell, megakaryocyte, or erythroid lineage.
GOC:add
A immature or mature cell in the lineage leading to and including erythrocytes.
CALOHA:TS-0290
FMA:62845
FMA:83516
erythropoietic cell
Note that in FMA erythropoietic cells are types of nucleated erythrocytes and thus don't include erythrocytes.
erythroid lineage cell
A immature or mature cell in the lineage leading to and including erythrocytes.
GOC:add
GOC:tfm
A nucleated precursor of an erythrocyte that lacks hematopoietic lineage markers.
BTO:0001571
CALOHA:TS-0289
FMA:83504
MESH:D004900
normoblast
erythroblast
true
A nucleated precursor of an erythrocyte that lacks hematopoietic lineage markers.
GOC:add
ISBN:0721601464
PMID:18174176
A cell of the monocyte, granulocyte, or mast cell lineage.
myeloid leukocyte
true
A cell of the monocyte, granulocyte, or mast cell lineage.
GOC:add
A hematopoietic multipotent progenitor cell is multipotent, but not capable of long-term self-renewal. These cells are characterized as lacking lineage cell surface markers and being CD34-positive in both mice and humans.
BTO:0000725
CALOHA:TS-0448
MPP
hemopoietic progenitor cell
Markers differ between mouse and human.
hematopoietic multipotent progenitor cell
A hematopoietic multipotent progenitor cell is multipotent, but not capable of long-term self-renewal. These cells are characterized as lacking lineage cell surface markers and being CD34-positive in both mice and humans.
GOC:add
GOC:tfm
PMID:19022770
A progenitor cell restricted to the myeloid lineage.
myeloid progenitor cell
BTO:0004730
CALOHA:TS-2099
FMA:70339
Note that this is a class of cell types, not an identified single cell type.
myeloid lineage restricted progenitor cell
true
A progenitor cell restricted to the myeloid lineage.
GOC:add
GOC:tfm
PMID:19022770
A neuron that releases serotonin as a neurotransmitter.
MESH:D059326
WBbt:0006837
5-HT neuron
5-hydroxytryptamine neuron
serotinergic neuron
serotonergic neuron
A neuron that releases serotonin as a neurotransmitter.
SANBI:mhl
A cell of a hematopoietic lineage.
BTO:0000574
CALOHA:TS-2017
FMA:70366
FMA:83598
haematopoietic cell
haemopoietic cell
hemopoietic cell
hematopoietic cell
A cell of a hematopoietic lineage.
GOC:add
GO_REF:0000031
A connective tissue cell found in bone.
2011-11-16T04:28:16Z
https://cellxgene.cziscience.com/cellguide/CL_0001035
bone cell
A connective tissue cell found in bone.
GOC:add
GO_REF:0000034
A hematopoietic oligopotent progenitor cell that has the ability to differentiate into limited cell types but lacks lineage cell markers and self renewal capabilities. Cell lacks hematopoeitic lineage markers.
2010-01-06T03:43:27Z
hematopoietic oligopotent progenitor cell, lineage-negative
A hematopoietic oligopotent progenitor cell that has the ability to differentiate into limited cell types but lacks lineage cell markers and self renewal capabilities. Cell lacks hematopoeitic lineage markers.
GOC:tfm
PMID:19022770
A progenitor cell committed to the erythroid lineage. This cell is ter119-positive but lacks expression of other hematopoietic lineage markers (lin-negative).
BTO:0004911
BFU-E
CFU-E
blast forming unit erythroid
burst forming unit erythroid
colony forming unit erythroid
erythroid stem cell
erythroid progenitor cell, mammalian
A progenitor cell committed to the erythroid lineage. This cell is ter119-positive but lacks expression of other hematopoietic lineage markers (lin-negative).
GOC:add
ISBN:0721601464
BFU-E
CFU-E
A hematopoietic progenitor cell that is capable of developing into only one lineage of hematopoietic cells.
2010-01-06T03:43:20Z
hematopoietic lineage restricted progenitor cell
A hematopoietic progenitor cell that is capable of developing into only one lineage of hematopoietic cells.
GOC:tfm
PMID:19022770
A hematopoietic oligopotent progenitor cell that has the ability to differentiate into limited cell types but lacks lineage cell markers and self renewal capabilities.
2010-01-06T03:43:27Z
This cell type is intended to be compatible with any vertebrate hematopoietic oligopotent progenitor cell. For mammalian hematopoietic oligopotent progenitor cells known to be lineage-negative, please use the term 'hematopoietic oligopotent progenitor cell' (CL_0001060).
hematopoietic oligopotent progenitor cell
A hematopoietic oligopotent progenitor cell that has the ability to differentiate into limited cell types but lacks lineage cell markers and self renewal capabilities.
GOC:tfm
PMID:19022770
https://orcid.org/0000-0001-5208-3432
A secretory cell found in pancreatic acini that secretes digestive enzymes and mucins. This cell is a typical zymogenic cell, have a basal nucleus and basophilic cytoplasm consisting of regular arrays of granular endoplasmic reticulum with mitochondria and dense secretory granules.
2010-06-24T03:16:29Z
BTO:0000028
CALOHA:TS-0737
FMA:63032
https://cellxgene.cziscience.com/cellguide/CL_0002064
acinar cell of pancreas
pancreatic acinar cell
true
A secretory cell found in pancreatic acini that secretes digestive enzymes and mucins. This cell is a typical zymogenic cell, have a basal nucleus and basophilic cytoplasm consisting of regular arrays of granular endoplasmic reticulum with mitochondria and dense secretory granules.
GOC:tfm
ISBN:0517223651
PMID:20395539
http://www.copewithcytokines.de/cope.cgi?key=pancreatic%20acinar%20cells
An enteroendocrine cell that produces glucagon.
2010-09-10T10:48:54Z
FMA:62939
https://cellxgene.cziscience.com/cellguide/CL_0002067
type A enteroendocrine cell
An enteroendocrine cell that produces glucagon.
GOC:tfm
ISBN:0412046911
Specialized cardiac myocyte that is subendocardially interspersed with the regular cardiac muscle cell. They are uninucleate cylindrical cells, associated end-to-end in long rows, continue from the node to the atrioventricular bundle; relatively short compared to ordinary myocytes but are nearly twice their diameter.
2010-06-28T08:36:15Z
BTO:0001032
FMA:14146
Purkinje cell fiber
Purkinje muscle cell
myocytus conducens cardiacus
Purkinje myocyte
Specialized cardiac myocyte that is subendocardially interspersed with the regular cardiac muscle cell. They are uninucleate cylindrical cells, associated end-to-end in long rows, continue from the node to the atrioventricular bundle; relatively short compared to ordinary myocytes but are nearly twice their diameter.
FMA:0412046911
GOC:tfm
PMID:19939742
A specialized cardiac myocyte in the sinoatrial and atrioventricular nodes. The cell is slender and fusiform confined to the nodal center, circumferentially arranged around the nodal artery.
2010-06-29T11:41:37Z
pacemaker cell
BTO:0004190
FMA:67101
P cell
cardiac pacemaker cell
myocytus nodalis
nodal myocyte
A specialized cardiac myocyte in the sinoatrial and atrioventricular nodes. The cell is slender and fusiform confined to the nodal center, circumferentially arranged around the nodal artery.
FMA:67101
GOC:tfm
cardiac pacemaker cell
GOC:pr
Specialized cardiac myocyte which is in the internodal tract and atrioventricular node. The cell is more slender than ordinary atrial myocytes and has more myofibrils than nodal myocytes.
2010-06-29T02:39:32Z
FMA:67142
transitional myocyte
Specialized cardiac myocyte which is in the internodal tract and atrioventricular node. The cell is more slender than ordinary atrial myocytes and has more myofibrils than nodal myocytes.
FMA:67142
GOC:tfm
The myoendocrine cellis a specialized myocyte localized mainly in the right and left atrial appendages, and also scattered within other areas of the atria and along the conductive system in the ventricular septum. The most conspicuous feature distinguishing myoendocrine cells from other atrial myoctyes is the presence of membane-bounded secretory granules (these granules contain precursor of cardiodilatins or atrial natriuretic polypeptides).
2010-06-29T11:50:47Z
FMA:67111
myocardial endocrine cell
The myoendocrine cellis a specialized myocyte localized mainly in the right and left atrial appendages, and also scattered within other areas of the atria and along the conductive system in the ventricular septum. The most conspicuous feature distinguishing myoendocrine cells from other atrial myoctyes is the presence of membane-bounded secretory granules (these granules contain precursor of cardiodilatins or atrial natriuretic polypeptides).
FMA:67111
GOC:tfm
An epithelial cell derived from endoderm.
2010-06-29T03:38:14Z
FMA:69075
endo-epithelial cell
An epithelial cell derived from endoderm.
FMA:69075
GOC:tfm
An epithelial cell derived from ectoderm.
2010-06-29T03:38:22Z
FMA:69074
ecto-epithelial cell
An epithelial cell derived from ectoderm.
FMA:69074
GOC:tfm
Epithelial cell derived from mesoderm or mesenchyme.
2010-06-29T03:49:14Z
FMA:69076
epithelial mesenchymal cell
meso-epithelial cell
Epithelial cell derived from mesoderm or mesenchyme.
FMA:69076
GOC:tfm
Epithelial cell found in the ducts of the pancreas. This cell type contributes to the high luminal pH.
2010-06-30T08:49:43Z
FMA:63099
pancreatic ductal cell
Epithelial cell found in the ducts of the pancreas. This cell type contributes to the high luminal pH.
FMA:63099
GOC:tfm
PMID:14740223
A cubodial epithelial cell that is continuous with the lining of intercalated ducts that drain the acinus. This cell type secretes a high pH solution to aid in activation of zymogens, and can differentiate into endocrine and exocrine pancreatic cell types.
2010-06-30T08:49:52Z
FMA:62455
centroacinar cell of Langerhans
pancreatic centroacinar cell
pancreatic centro-acinar cell
A cubodial epithelial cell that is continuous with the lining of intercalated ducts that drain the acinus. This cell type secretes a high pH solution to aid in activation of zymogens, and can differentiate into endocrine and exocrine pancreatic cell types.
GOC:tfm
PMID:12142741
PMID:20018761
PMID:8185160
A cardiac myocyte that is an excitable cells in the myocardium, specifically in the conducting system of heart.
2010-07-21T01:33:38Z
FMA:67968
specialized cardiac myocyte
A cardiac myocyte that is an excitable cells in the myocardium, specifically in the conducting system of heart.
FMA:67968
GOC:tfm
A leukocyte that lacks granules.
2010-07-22T11:30:33Z
FMA:62855
agranular leukocyte
nongranular leukocyte
true
A leukocyte that lacks granules.
GOC:tfm
This is a cell found in the gastrointestinal tract of mammals and serves as a pacemaker that triggers gut contraction. ICCs mediate inputs from the enteric nervous system to smooth muscle cells and are thought to be the cells from which gastrointestinal stromal tumors (GISTs) arise.
2010-07-22T03:26:00Z
BTO:0003914
FMA:86573
ICC
intestinal pacemaker cell
Some argue this cell type is of mesenchymal origin.
interstitial cell of Cajal
true
This is a cell found in the gastrointestinal tract of mammals and serves as a pacemaker that triggers gut contraction. ICCs mediate inputs from the enteric nervous system to smooth muscle cells and are thought to be the cells from which gastrointestinal stromal tumors (GISTs) arise.
GOC:tfm
PMID:16460275
PMID:19520112
intestinal pacemaker cell
GOC:pr
A cell found in the bone marrow. This can include fibroblasts, macrophages, adipocytes, osteoblasts, osteoclasts, endothelial cells and hematopoietic cells.
2010-07-22T04:48:15Z
BTO:0004850
FMA:83621
MESH:D001854
MH consider whether bone marrow cells are bone cells in the structural sense vs. being part of bone organ sense.
bone marrow cell
true
A cell found in the bone marrow. This can include fibroblasts, macrophages, adipocytes, osteoblasts, osteoclasts, endothelial cells and hematopoietic cells.
GOC:tfm
ISBN:0618947256
A cell in the hilum of the ovary that produces androgens.
2010-08-23T11:18:18Z
FMA:18710
hilar cell of ovary
hilus cell of ovary
A cell in the hilum of the ovary that produces androgens.
GOC:tfm
ISBN:068340007X
A stomal cell of the ovary
2010-08-23T12:10:31Z
FMA:72299
ovarian stromal cell
stromal cell of ovary
A stomal cell of the ovary
GOC:tfm
ovarian stromal cell
GOC:cjm
An endothelial cell of the vascular tree, which includes blood vessels and lymphatic vessels.
2010-08-24T02:06:40Z
BTO:0001854
CALOHA:TS-1106
FMA:67755
https://cellxgene.cziscience.com/cellguide/CL_0002139
vascular endothelial cell
cubodial endothelial cell of vascular tree
These cells are reportedly CD31-positive, CD34-positive, CD144-positive, TAL1-positive.
endothelial cell of vascular tree
An endothelial cell of the vascular tree, which includes blood vessels and lymphatic vessels.
GOC:dsd
GOC:tfm
PMID:12768659
An endothelial cell found in capillaries.
2010-08-24T10:15:00Z
BTO:0004956
CALOHA:TS-0112
FMA:67756
capillary endothelial cell
An endothelial cell found in capillaries.
GOC:tfm
Epithelial cells derived from general body ectoderm and ectoderm placodes.
2010-08-26T08:31:08Z
FMA:70556
general ecto-epithelial cell
Epithelial cells derived from general body ectoderm and ectoderm placodes.
GOC:tfm
An epithelial cell found in the lining of the stomach.
2010-08-25T03:22:08Z
FMA:62948
epithelial cell of stomach
true
An epithelial cell found in the lining of the stomach.
GOC:tfm
An epithelial cell of the stomach. This cell produces mucous.
2010-08-25T03:38:51Z
FMA:63464
mucous cell of stomach
An epithelial cell of the stomach. This cell produces mucous.
GOC:tfm
A stomach epithelial cell that is olumnar in form with a few short apical microvilli; relatively undifferentiated mitotic cell from which other types of gland are derived; few in number, situated in the isthmus region of the gland and base of the gastric pit.
2010-08-25T03:57:08Z
FMA:62953
stem cell of gastric gland
true
A stomach epithelial cell that is olumnar in form with a few short apical microvilli; relatively undifferentiated mitotic cell from which other types of gland are derived; few in number, situated in the isthmus region of the gland and base of the gastric pit.
GOC:tfm
ISBN:0517223651
A stem cell that can give rise to the cells of the liver. The term usually refers to the self-renewing pool of hepatocyte precursors in the adult liver (differently from 'hepatoblast', often used for fetal precursors of hepatocytes).
2010-08-30T02:00:42Z
FMA:86577
HpSC
hepatic stem cell
https://github.com/obophenotype/cell-ontology/issues/800
true
A stem cell that can give rise to the cells of the liver. The term usually refers to the self-renewing pool of hepatocyte precursors in the adult liver (differently from 'hepatoblast', often used for fetal precursors of hepatocytes).
GOC:tfm
PMID:26798363
HpSC
PMID:18442648
An epithelial cell of the tracheobronchial tree.
2010-09-02T02:09:14Z
FMA:66816
epithelial cell of tracheobronchial tree
An epithelial cell of the tracheobronchial tree.
GOC:tfm
An epithelial cell present in the trachea and bronchi; columnar in shape; generally lack cilia; immature forms of ciliated or secretory cells which have been formed from stem cells.
2010-09-02T02:53:59Z
FMA:69060
undifferentiated columnar cell of tracheobronchial tree
intermediate epitheliocyte
An epithelial cell present in the trachea and bronchi; columnar in shape; generally lack cilia; immature forms of ciliated or secretory cells which have been formed from stem cells.
GOC:tfm
ISBN:0517223651
A cell comprising the transparent, biconvex body separating the posterior chamber and vitreous body, and constituting part of the refracting mechanism of the mammalian eye.
2010-09-07T10:38:03Z
FMA:70950
vertebrate lens cell
A cell comprising the transparent, biconvex body separating the posterior chamber and vitreous body, and constituting part of the refracting mechanism of the mammalian eye.
GOC:tfm
ISBN:0721662544
A cell of the cuboidal epithelium that covers the lens. The cells of the lens epithelium regulate most of the homeostatic functions of the lens. As ions, nutrients, and liquid enter the lens from the aqueous humor, Na+/K+ ATPase pumps in the lens epithelial cells pump ions out of the lens to maintain appropriate lens osmolarity and volume, with equatorially positioned lens epithelium cells contributing most to this current. The activity of the Na+/K+ ATPases keeps water and current flowing through the lens from the poles and exiting through the equatorial regions. The cells of the lens epithelium also serve as the progenitors for new lens fibers. It constantly lays down fibers in the embryo, fetus, infant, and adult, and continues to lay down fibers for lifelong growth.
2010-09-07T10:45:47Z
FMA:67559
lens epithelial cell
true
A cell of the cuboidal epithelium that covers the lens. The cells of the lens epithelium regulate most of the homeostatic functions of the lens. As ions, nutrients, and liquid enter the lens from the aqueous humor, Na+/K+ ATPase pumps in the lens epithelial cells pump ions out of the lens to maintain appropriate lens osmolarity and volume, with equatorially positioned lens epithelium cells contributing most to this current. The activity of the Na+/K+ ATPases keeps water and current flowing through the lens from the poles and exiting through the equatorial regions. The cells of the lens epithelium also serve as the progenitors for new lens fibers. It constantly lays down fibers in the embryo, fetus, infant, and adult, and continues to lay down fibers for lifelong growth.
GOC:tfm
ISBN:0721662544
http://en.wikipedia.org/wiki/Lens_%28anatomy%29#Lens_epithelium
A fibroblast in the bone marrow.
2010-09-07T02:25:18Z
FMA:84377
marrow fibroblast
A fibroblast in the bone marrow.
GOC:tfm
A cell containing at least one nucleus.
2010-09-07T03:32:33Z
FMA:67513
nucleate cell
A cell containing at least one nucleus.
GOC:tfm
A circular smooth muscle cell of the iris, innervated by the ciliary nerves (parasympathetic), and acting to contract the pupil. This muscle cell derives from neuroectoderm. This smooth muscle cell results from transformation of epithelial cells to smooth muscle cells.
2010-09-08T08:53:42Z
FMA:70611
https://cellxgene.cziscience.com/cellguide/CL_0002243
smooth muscle fiber of sphincter of pupil
smooth muscle fibre of sphincter of pupil
smooth muscle cell of sphincter of pupil
true
A circular smooth muscle cell of the iris, innervated by the ciliary nerves (parasympathetic), and acting to contract the pupil. This muscle cell derives from neuroectoderm. This smooth muscle cell results from transformation of epithelial cells to smooth muscle cells.
GOC:tfm
ISBN:0721662544
ISBN:0721694128
A hematopoeitic stem cell found in the blood. Normally found in very limited numbers in the peripheral circulation (less than 0.1% of all nucleated cells).
2010-09-07T03:57:09Z
BTO:0002669
FMA:86711
MESH:D000072916
PBSC
peripheral blood stem cell
true
A hematopoeitic stem cell found in the blood. Normally found in very limited numbers in the peripheral circulation (less than 0.1% of all nucleated cells).
GOC:tfm
A cell that is found in a zone occupying the bottom region of the crypt; provide the source of most of the cell types of the intestinal epithelium; proliferate by mitotic division; differentiates into columnar or goblet cells.
2010-09-08T09:21:22Z
FMA:63379
https://cellxgene.cziscience.com/cellguide/CL_0002250
stem cell of intestinal crypt of Lieberkuhn
intestinal crypt stem cell
A cell that is found in a zone occupying the bottom region of the crypt; provide the source of most of the cell types of the intestinal epithelium; proliferate by mitotic division; differentiates into columnar or goblet cells.
GOC:tfm
ISBN:0517223651
An epithelial cell of the musculomembranous digestive tube extending from the mouth to the anus.
2010-09-08T09:26:53Z
epithelial cell of alimentary canal
An epithelial cell of the musculomembranous digestive tube extending from the mouth to the anus.
GOC:tfm
ISBN:0721662544
An epithelial cell of the lining of the esophagus.
2010-09-08T09:28:20Z
FMA:63071
epithelial cell of esophagus
true
An epithelial cell of the lining of the esophagus.
GOC:tfm
An epithelial cell of the lining of the large intestine.
2010-09-08T09:28:22Z
BTO:0004297
FMA:256157
epithelial cell of colon
epithelial cell of large intestine
true
An epithelial cell of the lining of the large intestine.
GOC:tfm
An epithelial cell of the lining of the small intestine.
2010-09-08T09:41:46Z
FMA:256159
epithelial cell of small intestine
true
An epithelial cell of the lining of the small intestine.
GOC:tfm
An endothelial cell that lines any of the venous cavities through which blood passes in various glands and organs such as the spleen and liver.
2010-09-14T10:57:26Z
FMA:63134
https://cellxgene.cziscience.com/cellguide/CL_0002262
endothelial cell of sinusoid
An endothelial cell that lines any of the venous cavities through which blood passes in various glands and organs such as the spleen and liver.
GOC:tfm
ISBN:0618947256
A type of enteroendocrine cell found in the stomach that secretes glucagon.
2010-09-10T10:54:42Z
FMA:83411
type A cell of stomach
A type of enteroendocrine cell found in the stomach that secretes glucagon.
GOC:tfm
A D cell located in the colon.
2010-09-10T11:37:35Z
FMA:268744
colon D-cell
colonic delta cell
delta cell of colon
type D cell of colon
A D cell located in the colon.
GOC:tfm
A type D cell of the small intestine.
2010-09-10T01:34:22Z
FMA:268736
delta cell of small intestine
small intestine D-cell
small intestine delta cell
type D cell of small intestine
A type D cell of the small intestine.
GOC:tfm
A type D cell found in the stomach.
2010-09-10T01:36:03Z
FMA:83410
delta cell of stomach
stomach D-cell
stomach delta cell
type D cell of stomach
A type D cell found in the stomach.
GOC:tfm
A PP cell located in the islets of the pancreas.
2010-09-10T03:30:31Z
BTO:0000805
FMA:70588
MESH:D050418
https://cellxgene.cziscience.com/cellguide/CL_0002275
PP cell of pancreatic islet
PP-cell of pancreatic islet
pancreatic polypeptide-secreting cell
The term PP cell of pancreatic acinus was obsoleted due to a lack of evidence, making PP cell of pancreatic islets synonymous with pancreatic PP cell.
pancreatic PP cell
A PP cell located in the islets of the pancreas.
GOC:tfm
An epithelial cell of a skin gland.
2010-09-14T12:00:07Z
FMA:70657
epithelial cell of gland of skin
epithelial cell of skin gland
An epithelial cell of a skin gland.
GOC:tfm
A cell that is part of the nervous system.
2010-09-15T01:34:57Z
CALOHA:TS-2040
FMA:70333
neural cell
A cell that is part of the nervous system.
GOC:tfm
ISBN:0618947256
A cell of the supporting or framework tissue of the body, arising chiefly from the embryonic mesoderm and including adipose tissue, cartilage, and bone.
2010-09-15T03:01:54Z
CALOHA:TS-2096
FMA:63875
MESH:D003239
connective tissue cell
A cell of the supporting or framework tissue of the body, arising chiefly from the embryonic mesoderm and including adipose tissue, cartilage, and bone.
GOC:tfm
ISBN:0618947256
A cell of the embryo.
2010-09-15T03:39:21Z
CALOHA:TS-0263
FMA:82840
WBbt:0007028
https://cellxgene.cziscience.com/cellguide/CL_0002321
embryonic cell (metazoa)
A cell of the embryo.
FMA:0618947256
An epithelial cell of the bronchus.
2010-09-20T02:00:00Z
BTO:0002922
bronchial epithelial cell
An epithelial cell of the bronchus.
GOC:tfm
An adipocyte derived from a neural crest cell.
2010-09-20T02:25:25Z
neural crest derived adipocyte
An adipocyte derived from a neural crest cell.
GOC:tfm
PMID:17507398
An endothelial cell that lines the intracavitary lumen of the heart, separating the circulating blood from the underlying myocardium. This cell type releases a number of vasoactive substances including prostacyclin, nitrous oxide and endothelin.
2010-09-21T04:33:05Z
FMA:75621
https://cellxgene.cziscience.com/cellguide/CL_0002350
endocardial endothelial cell
endothelial cell of endocardium
endocardial cell
An endothelial cell that lines the intracavitary lumen of the heart, separating the circulating blood from the underlying myocardium. This cell type releases a number of vasoactive substances including prostacyclin, nitrous oxide and endothelin.
GOC:tfm
ISSN:0452-3458
endothelial cell of endocardium
FMA:75621
A progenitor cell that is able to differentiate into the pancreas alpha, beta and delta endocrine cells. This cell type expresses neurogenin-3 and Isl-1.
2010-09-21T04:41:06Z
pancreatic endocrine progenitor
pancreatic islet progenitor cell
progenitor cell of endocrine pancreas
A progenitor cell that is able to differentiate into the pancreas alpha, beta and delta endocrine cells. This cell type expresses neurogenin-3 and Isl-1.
GOC:tfm
PMID:20025937
PMID:20217494
PMID:22728667
A hematopoietic stem cell that exists during embryogenesis.
2010-09-22T09:05:13Z
gestational hematopoietic stem cell
A hematopoietic stem cell that exists during embryogenesis.
GOC:tfm
ISBN:978-60327-246-6
A keratocyte is a specialized fibroblast residing in the cornea stroma that has a flattened, dendritic morphology; located between the lamellae with a large flattened nucleus, and lengthy processes which communicate with neighboring cells. This corneal layer, representing about 85-90% of corneal thickness, is built up from highly regular collagenous lamellae and extracellular matrix components. Keratocytes play the major role in keeping it transparent, healing its wounds, and synthesizing its components. This cell type secretes collagen I, V, VI, and keratan sulfate.
2010-09-22T01:57:40Z
corneal fibroblast
corneal keratocyte
keratocyte
A keratocyte is a specialized fibroblast residing in the cornea stroma that has a flattened, dendritic morphology; located between the lamellae with a large flattened nucleus, and lengthy processes which communicate with neighboring cells. This corneal layer, representing about 85-90% of corneal thickness, is built up from highly regular collagenous lamellae and extracellular matrix components. Keratocytes play the major role in keeping it transparent, healing its wounds, and synthesizing its components. This cell type secretes collagen I, V, VI, and keratan sulfate.
GOC:tfm
ISBN:9780702029585
An epithelial cell of the respiratory tract epithelium. These cells have an endodermal origin.
2010-09-23T04:38:49Z
BTO:0004533
airway epithelial cell
respiratory epithelial cell
respiratory tract epithelial cell
An epithelial cell of the respiratory tract epithelium. These cells have an endodermal origin.
GOC:tfm
A transversely striated, multinucleated syncytial muscle cell, formed by the fusion of myoblasts during muscle development.
2010-09-24T01:13:01Z
myofiber
myofibril
myotube
A transversely striated, multinucleated syncytial muscle cell, formed by the fusion of myoblasts during muscle development.
GOC:dos
GOC:tfm
ISBN:0323052908
PMID:22274696
myofiber
FBbt:00005812
myofibril
FBbt:00005812
A reticulocyte that retains the nucleus and other organelles. Found in birds, fish, amphibians and reptiles.
2010-10-15T09:24:05Z
nucleated reticulocyte
true
A reticulocyte that retains the nucleus and other organelles. Found in birds, fish, amphibians and reptiles.
GOC:tfm
PMID:18182572
PMID:9011180
PMID:9046052
A cell located in the heart, including both muscle and non muscle cells.
2010-12-07T09:37:22Z
BTO:0001539
CALOHA:TS-0115
FMA:83808
FMA:84791
heart cell
From Onard of the FMA: Cardiac muscle cell or cardiac myocyte is a striated muscle cell. Cardiocyte on the other hand is any cell in the heart which includes cells other than muscle cells (e.g. endothelial cell of endocardium). Unless there is a consensus among anatomists that cardiocytes refer only to muscle cells, we will treat them as a general class of cells in the heart.
cardiocyte
A cell located in the heart, including both muscle and non muscle cells.
GOC:tfm
A cell of the adventitial layer of ductal structures such as the uterer, defent duct, biliary duct, etc
2010-12-07T04:03:56Z
BTO:0002441
FMA:84639
adventitial cell
A cell of the adventitial layer of ductal structures such as the uterer, defent duct, biliary duct, etc
GOC:tfm
A smooth muscle cell of the intestine.
2011-01-17T03:39:38Z
https://cellxgene.cziscience.com/cellguide/CL_0002504
intestinal smooth muscle cell
enteric smooth muscle cell
true
A smooth muscle cell of the intestine.
GOC:tfm
An adipocyte that is part of subcutaneous adipose tissue.
2011-02-21T02:51:22Z
subcutaneous fat cell
subcutaneous adipocyte
true
An adipocyte that is part of subcutaneous adipose tissue.
GOC:tfm
An epithelial cell of the intrahepatic portion of the bile duct. These cells are flattened or cuboidal in shape, and have a small nuclear-to-cytoplasmic ratio relative to large/extrahepatic cholangiocytes.
2011-02-28T01:20:20Z
https://cellxgene.cziscience.com/cellguide/CL_0002538
small bile duct cholangiocyte
intrahepatic cholangiocyte
true
An epithelial cell of the intrahepatic portion of the bile duct. These cells are flattened or cuboidal in shape, and have a small nuclear-to-cytoplasmic ratio relative to large/extrahepatic cholangiocytes.
GOC:tfm
PMID:23720296
small bile duct cholangiocyte
PMID:23720296
A smooth muscle cell of the aorta.
2011-02-28T01:42:12Z
BTO:0004577
https://cellxgene.cziscience.com/cellguide/CL_0002539
aortic smooth muscle cell
A smooth muscle cell of the aorta.
GOC:tfm
A mesenchymal stem cell that is part of the bone marrow.
2011-02-28T01:47:47Z
mesenchymal stem cell of the bone marrow
A mesenchymal stem cell that is part of the bone marrow.
GOC:tfm
An endothelial cell that is part of the vein.
2011-02-28T03:48:11Z
FMA:62104
KUPO:0001099
https://cellxgene.cziscience.com/cellguide/CL_0002543
endothelial cell of vein
venous endothelial cell
vein endothelial cell
true
An endothelial cell that is part of the vein.
GOC:tfm
A fibroblast of the aortic adventitia.
2011-02-28T04:43:41Z
fibroblast of the aortic adventitia
true
A fibroblast of the aortic adventitia.
GOC:tfm
A fibroblast that is part of the heart.
2011-02-28T04:57:44Z
cardiac fibroblast
fibroblast of cardiac tissue
true
true
A fibroblast that is part of the heart.
GOC:tfm
Any skin fibroblast that is part of some dermis.
2011-02-28T05:05:33Z
fibroblast of dermis
true
Any skin fibroblast that is part of some dermis.
FBC:Autogenerated
A fibroblast that is part of lung.
2011-02-28T05:11:03Z
BTO:0000764
CALOHA:TS-0575
fibroblast of lung
true
A fibroblast that is part of lung.
GOC:tfm
A fibroblast of pulmonary artery.
2011-02-28T05:22:27Z
fibroblast of pulmonary artery
true
A fibroblast of pulmonary artery.
GOC:tfm
An epithelial cell of the lining of the intestine.
2011-03-01T05:18:31Z
intestinal epithelial cell
An epithelial cell of the lining of the intestine.
GOC:tfm
A mesenchymal stem cell of adipose tissue.
2011-03-01T09:57:17Z
https://cellxgene.cziscience.com/cellguide/CL_0002570
mesenchymal stem cell of adipose
mesenchymal stem cell of adipose tissue
A mesenchymal stem cell of adipose tissue.
GOC:tfm
A mesenchymal stem cell of liver.
2011-03-01T09:58:51Z
hepatic mesenchymal stem cell
true
A mesenchymal stem cell of liver.
GOC:tfm
A mesenchymal stem cell of the vertebrae.
2011-03-01T10:40:27Z
vertebral mesenchymal stem cell
true
A mesenchymal stem cell of the vertebrae.
GOC:tfm
A stromal cell of the pancreas.
2011-03-02T02:40:41Z
stromal cell of pancreas
true
A stromal cell of the pancreas.
GOC:tfm
A blood vessel endothelial cell that is part of the retina.
2011-03-06T03:28:27Z
https://cellxgene.cziscience.com/cellguide/CL_0002585
retinal blood vessel endothelial cell
true
A blood vessel endothelial cell that is part of the retina.
GOC:tfm
A smooth muscle cell of the bachiocephalic vasculature.
2011-03-06T05:00:58Z
smooth muscle cell of the brachiocephalic vasculature
A smooth muscle cell of the bachiocephalic vasculature.
GOC:tfm
A vascular associated smooth muscle cell of the brain vasculature.
2011-03-06T05:01:20Z
smooth muscle cell of the brain vasculature
true
A vascular associated smooth muscle cell of the brain vasculature.
GOC:tfm
A smooth muscle of the pulmonary artery.
2011-03-06T05:01:28Z
BTO:0003336
https://cellxgene.cziscience.com/cellguide/CL_0002591
smooth muscle cell of the pulmonary artery
A smooth muscle of the pulmonary artery.
GOC:tfm
A smooth muscle cell of the subclavian artery.
2011-03-06T05:01:52Z
smooth muscle cell of the subclavian artery
A smooth muscle cell of the subclavian artery.
GOC:tfm
Smooth muscle cell of the carotid artery.
2011-03-06T05:01:56Z
smooth muscle cell of the carotid artery
Smooth muscle cell of the carotid artery.
GOC:tfm
Any smooth muscle cell that is part of some bronchus.
2011-03-06T05:46:39Z
BTO:0004402
https://cellxgene.cziscience.com/cellguide/CL_0002598
bronchial smooth muscle cell
Any smooth muscle cell that is part of some bronchus.
FBC:Autogenerated
A smooth muscle cell of the esophagus.
2011-03-06T05:48:17Z
smooth muscle cell of the esophagus
true
A smooth muscle cell of the esophagus.
GOC:tfm
A smooth muscle cell of the trachea.
2011-03-06T05:50:28Z
https://cellxgene.cziscience.com/cellguide/CL_0002600
smooth muscle cell of trachea
A smooth muscle cell of the trachea.
GOC:tfm
A neuron of the raphe nuclei.
2011-03-06T07:42:06Z
raphe nuclei neuron
A neuron of the raphe nuclei.
GOC:tfm
A neuron of the ventral spinal cord.
2011-03-06T07:46:03Z
neuron of the ventral spinal cord
A neuron of the ventral spinal cord.
GOC:tfm
A fibroblast of skin.
2011-03-14T12:31:49Z
BTO:0001255
CALOHA:TS-0935
skin fibroblast
true
A fibroblast of skin.
GOC:tfm
Any epithelial cell that is part of some lower respiratory tract epithelium.
2011-06-21T12:29:31Z
epithelial cell of lower respiratory tract
Any epithelial cell that is part of some lower respiratory tract epithelium.
FBC:Autogenerated
A squamous shaped endothelial cell.
2011-07-08T03:31:25Z
squamous endothelial cell
A squamous shaped endothelial cell.
GOC:dos
A glandular epithelial cell of the esophagus.
2011-07-08T03:55:57Z
FMA:86548
glandular cell of esophagus
true
true
A glandular epithelial cell of the esophagus.
GOC:tfm
A glandular epithelial cell of the large intestine.
2011-07-08T04:03:01Z
FMA:87194
glandular cell of the large intestine
true
A glandular epithelial cell of the large intestine.
GOC:tfm
A glandular epithelial cell that is part of the stomach.
2011-07-11T01:20:35Z
CALOHA:TS-1284
FMA:86554
glandular cell of stomach
glandular epithelial cell of stomach
A glandular epithelial cell that is part of the stomach.
GOC:tfm
A myocardial endocrine cell that is part of the atrium.
2011-07-11T02:45:39Z
FMA:83389
myocardial endocrine cell of atrium
true
A myocardial endocrine cell that is part of the atrium.
GOC:tfm
A stem cell that can give rise to multiple cell types (i.e. smooth muscle, endothelial) in the developing heart.
2011-07-11T03:15:38Z
cardiovascular progenitor cell
CPC
Discrepancy in develops from origins prevents me from making the assertion that cardioblasts give rise to all instances of cardiocytes as we state cardiac muscle cells develop from cardiac myoblast, which in turn develop from muscle stem cell.
cardioblast
A stem cell that can give rise to multiple cell types (i.e. smooth muscle, endothelial) in the developing heart.
GOC:tfm
PMID:19745164
cardiovascular progenitor cell
PMID:17519333
PMID:19745164
CPC
PMID:19745164
A multi-fate stem cell that can give rise to different retinal cell types including rod and cone cells.
2011-08-16T02:38:01Z
retinal progenitor cell
A multi-fate stem cell that can give rise to different retinal cell types including rod and cone cells.
GOC:tfm
PMID:20959166
PMID:21148186
A neuroblast derived from a neural crest cell.
2011-08-22T09:24:15Z
neural crest derived neuroblast
A neuroblast derived from a neural crest cell.
GOC:tfm
PMID:17407019
A PP cell found in intestine.
2011-09-27T11:59:01Z
PP cell of intestine
true
A PP cell found in intestine.
GOC:tfm
PMID:2420136
PMID:728970
A CNS interneuron located in the spinal cord.
Is_a interneuron, part_of UBERON:0002240.
spinal cord interneuron
true
A CNS interneuron located in the spinal cord.
CL:CVS
A motor neuron that innervates a skeletal muscle. These motor neurons are all excitatory and cholinergic.
somatic motor neuron
somatomotor neuron
A motor neuron that innervates a skeletal muscle. These motor neurons are all excitatory and cholinergic.
ZFIN:CVS
Multi fate stem cell that gives rise to both hepatocytes and cholangiocytes as descendants. The term often refers to fetal precursors of hepatocytes (differently from 'hepatic stem cell', usually applied to the self-renewing pool of hepatocyte precursors in the adult liver). Hepatoblasts may also be endogenous, as some stem cells found in the liver come from the bone marrow via blood circulation.
https://cellxgene.cziscience.com/cellguide/CL_0005026
hepatoblast
https://github.com/obophenotype/cell-ontology/issues/800
Multi fate stem cell that gives rise to both hepatocytes and cholangiocytes as descendants. The term often refers to fetal precursors of hepatocytes (differently from 'hepatic stem cell', usually applied to the self-renewing pool of hepatocyte precursors in the adult liver). Hepatoblasts may also be endogenous, as some stem cells found in the liver come from the bone marrow via blood circulation.
GOC:CVS
PMID:18356246
PMID:20483998
PMID:26798363
https://orcid.org/0000-0003-1940-6740
Cell that has the potential to form a skeletal cell type (e.g. cells in periosteum, cells in marrow) and produce extracellular matrix (often mineralized) and skeletal tissue (often mineralized).
2012-06-15T02:51:27Z
scleroblast
Needs logical definition. Should be capable_of skeletal system morphogenesis? or skeletal tissue development? needs to be added to GO. NOTES:a cell type of the early embryo (see also: mesenchymal cells) that will give rise to mineralized connective tissue. Scleroblasts can differentiate into osteoblasts (bone-forming cells), chondroblasts (cartilage-forming cells), odontoblasts (dentin-forming cells), ameloblasts (enamel-forming cells). The mesenchymal cells developing into osteoblasts and chondroblasts are derived from the mesoderm. Those developing into odontoblasts are neural crest cells. Those developing into ameloblasts are derived from the ectoderm. (http://www.copewithcytokines.de/cope.cgi?key=scleroblasts)
skeletogenic cell
Cell that has the potential to form a skeletal cell type (e.g. cells in periosteum, cells in marrow) and produce extracellular matrix (often mineralized) and skeletal tissue (often mineralized).
GO_REF:0000034
scleroblast
GO_REF:0000034
Cell that is part of the neural crest region of the neuroepithelium, prior to migration. Note that not all premigratory neural crest cells may become migratory neural crest cells.
2012-06-27T08:27:35Z
premigratory neural crest cell
Cell that is part of the neural crest region of the neuroepithelium, prior to migration. Note that not all premigratory neural crest cells may become migratory neural crest cells.
UBERONREF:0000002
Skeletogenic cell that has the potential to develop into a chondroblast; and arises from neural crest, meseosdermal and notochordal and connective tissue cells.
2012-06-27T10:44:01Z
prechondroblast
Skeletogenic cell that has the potential to develop into a chondroblast; and arises from neural crest, meseosdermal and notochordal and connective tissue cells.
GO_REF:0000034
Any muscle cell in which the fibers are not organised into sarcomeres.
non-striated muscle cell
Any muscle cell in which the fibers are not organised into sarcomeres.
GOC:DOS
Any hematopoietic cell that is a precursor of some other hematopoietic cell type.
hematopoietic precursor cell
Any hematopoietic cell that is a precursor of some other hematopoietic cell type.
GOC:dos
A transversely striated, synctial cell of skeletal muscle. It is formed when proliferating myoblasts exit the cell cycle, differentiate and fuse.
MESH:D018485
skeletal muscle fiber
A transversely striated, synctial cell of skeletal muscle. It is formed when proliferating myoblasts exit the cell cycle, differentiate and fuse.
GOC:tfm
ISBN:0323052908
A muscle cell that is part of some visceral muscle.
visceral muscle cell
A muscle cell that is part of some visceral muscle.
GOC:dos
A visceral muscle cell that is striated. Examples include the visceral muscle cells of arhtropods.
striated visceral muscle cell
A visceral muscle cell that is striated. Examples include the visceral muscle cells of arhtropods.
GOC:dos
A visceral muscle that is transversely striated. Examples include the visceral muscle cells of arthropods.
transversely striated visceral muscle cell
A visceral muscle that is transversely striated. Examples include the visceral muscle cells of arthropods.
GOC:dos
A skeletal muscle myoblast that is part of a skeletal mucle. These cells are formed following acivation and division of skeletal muscle satellite cells. They form a transient population that is lost when they fuse to form skeletal muscle fibers.
myogenic precursor cell
The vast majority of these cells develop from skeletal muscle satellite cells, although there are some reports of other origins.
adult skeletal muscle myoblast
A skeletal muscle myoblast that is part of a skeletal mucle. These cells are formed following acivation and division of skeletal muscle satellite cells. They form a transient population that is lost when they fuse to form skeletal muscle fibers.
PMID:23303905
myogenic precursor cell
PMID:23303905
A non-polarised cell precursor cell that is part of some mesenchyme, is associated with the cell matrix but is not connected to other cells and is capable of migration.
mesenchyme cell
mesenchymal cell
A mesenchymal cell of the endocardial cushion. These cells develop via an epithelial to mesenchymal transition when endocardial cells break cell-to-cell contacts and migrate into the cardiac jelly. Cells from this population form the heart septa and valves.
endocardial cushion cell
A mesenchymal cell of the endocardial cushion. These cells develop via an epithelial to mesenchymal transition when endocardial cells break cell-to-cell contacts and migrate into the cardiac jelly. Cells from this population form the heart septa and valves.
PMID:18816864
An endocrine cell that is part of the pancreas.
pancreatic endocrine cell
An endocrine cell that is part of the pancreas.
GOC:dos
A neuron that release noradrenaline (noriphinephrine) as a neurotransmitter.
noradrenergic neuron
A neuron that release noradrenaline (noriphinephrine) as a neurotransmitter.
GOC:dos
Any neuron that is capable of part of some visual perception.
2017-07-09T19:12:36Z
visual system neuron
Any neuron that is capable of part of some visual perception.
FBC:Autogenerated
Mural cells are pericytes and the vascular smooth muscle cells (vSMCs) of the microcirculation.
2020-02-29T17:33:55Z
mural cell
Mural cells are pericytes and the vascular smooth muscle cells (vSMCs) of the microcirculation.
Wiki:Mural_cell&oldid=930603194
Any vascular associated smooth muscle cell that is part of some microcirculatory vessel.
2020-02-29T17:37:00Z
microcirculation associated smooth muscle cell
Any vascular associated smooth muscle cell that is part of some microcirculatory vessel.
FBC:Autogenerated
A sensory neuron of the spinal nerve that senses body position and sends information about how much the muscle is stretched to the spinal cord.
spinal sensory neuron
sensory neuron of spinal nerve
A sensory neuron of the spinal nerve that senses body position and sends information about how much the muscle is stretched to the spinal cord.
GOC:nv
GOC:pr
Any cell in the compound eye, a light sensing organ composed of ommatidia.
GOC:pr
PMID:12021768
compound eye retinal cell
Any cell in the retina, the innermost layer or coating at the back of the eyeball, which is sensitive to light and in which the optic nerve terminates.
PMID:10702418
retinal cell
Any cell in the retina, the innermost layer or coating at the back of the eyeball, which is sensitive to light and in which the optic nerve terminates.
GOC:pr
An enteroendocrine cell that is located in the small intestine.
https://cellxgene.cziscience.com/cellguide/CL_0009006
small intestine enteroendocrine cell
enteroendocrine cell of small intestine
An enteroendocrine cell that is located in the small intestine.
http://orcid.org/0000-0003-3440-1876
An intestinal stem cell that is located in the large intestine crypt of Liberkuhn. These stem cells reside at the bottom of crypts in the large intestine and are highly proliferative. They either differentiate into transit amplifying cells or self-renew to form new stem cells.
crypt stem cell of large intestine
stem cell of large intestine crypt of Lieberkuhn
intestinal crypt stem cell of large intestine
An intestinal stem cell that is located in the large intestine crypt of Liberkuhn. These stem cells reside at the bottom of crypts in the large intestine and are highly proliferative. They either differentiate into transit amplifying cells or self-renew to form new stem cells.
PMID:20683682
https://orcid.org/0000-0003-4183-8865
An intestinal stem cell that is located in the small intestine crypt of Liberkuhn. These stem cells reside at the bottom of crypts in the small intestine and are highly proliferative. They either differentiate into transit amplifying cells or self-renew to form new stem cells.
crypt stem cell of small intestine
https://cellxgene.cziscience.com/cellguide/CL_0009017
stem cell of small intestine crypt of Lieberkuhn
intestinal crypt stem cell of small intestine
An intestinal stem cell that is located in the small intestine crypt of Liberkuhn. These stem cells reside at the bottom of crypts in the small intestine and are highly proliferative. They either differentiate into transit amplifying cells or self-renew to form new stem cells.
PMID:20683682
https://orcid.org/0000-0003-4183-8865
A stromal cell found in the lamina propria of the large intestine.
stromal cell of lamina propria of large intestine
A stromal cell found in the lamina propria of the large intestine.
http://orcid.org/0000-0003-4183-8865
A stromal cell found in the lamina propria of the small intestine.
stromal cell of lamina propria of small intestine
A stromal cell found in the lamina propria of the small intestine.
http://orcid.org/0000-0003-4183-8865
A mesothelial cell that is part of the small intestine.
mesothelial cell of small intestine
A mesothelial cell that is part of the small intestine.
http://orcid.org/0000-0003-4183-8865
A mesothelial cell that is part of the colon.
mesothelial cell of large intestine
mesothelial cell of colon
A mesothelial cell that is part of the colon.
http://orcid.org/0000-0003-3440-1876
http://orcid.org/0000-0003-4183-8865
A stromal cell found in the lamina propria of the colon.
stromal cell of colon lamina propria
stromal cell of lamina propria of colon
A stromal cell found in the lamina propria of the colon.
http://orcid.org/0000-0003-3440-1876
An enteroendocrine cell that is located in the colon.
colon enteroendocrine cell
enteroendocrine cell of colon
An enteroendocrine cell that is located in the colon.
http://orcid.org/0000-0003-3440-1876
An intestinal crypt stem cell that is located in the crypt of Lieberkuhn of colon.
https://cellxgene.cziscience.com/cellguide/CL_0009043
intestinal crypt stem cell of colon
An intestinal crypt stem cell that is located in the crypt of Lieberkuhn of colon.
PMID:10841502
http://orcid.org/0000-0003-3440-1876
A smooth muscle cell that is located in the anorectum.
anorectum smooth muscle cell
smooth muscle cell of anorectum
A smooth muscle cell that is located in the anorectum.
http://orcid.org/0000-0003-3440-1876
A stromal cell found in the lamina propria of the anorectum.
stromal cell of anorectum lamina propria
A stromal cell found in the lamina propria of the anorectum.
http://orcid.org/0000-0003-3440-1876
An intestinal crypt stem cell that is located in the anorectum.
anorectum intestinal crypt stem cell
intestinal crypt stem cell of anorectum
An intestinal crypt stem cell that is located in the anorectum.
http://orcid.org/0000-0003-3440-1876
An enteroendocrine cell that is located in the anorectum.
anorectum enteroendocrine cell
enteroendocrine cell of anorectum
An enteroendocrine cell that is located in the anorectum.
http://orcid.org/0000-0003-3440-1876
An endothelial cell that is part of a hepatic portal vein.
2021-12-13T14:01:05Z
portal endothelial cell
EFO:0010704
endothelial cell of hepatic portal vein
An endothelial cell that is part of a hepatic portal vein.
PMID:30348985
https://orcid.org/0000-0003-3440-1876
https://orcid.org/0000-0003-4183-8865
A skeletal muscle fiber found in an embryo. In mammalian embryos, skeletal muscle expresses myosin heavy chain-embryonic (MyHC-emb, encoded by the MYH3 gene), which regulates skeletal muscle development.
2022-02-21T15:39:10Z
embryonic skeletal muscle fiber
A skeletal muscle fiber found in an embryo. In mammalian embryos, skeletal muscle expresses myosin heavy chain-embryonic (MyHC-emb, encoded by the MYH3 gene), which regulates skeletal muscle development.
PMID:32094117
PMID:7196501
http://orcid.org/0000-0003-2034-601X
A fibroblast located in the portal triad. Hepatic portal fibroblast are a non-parenchymal cell population located adjacent to bile duct epithelia in liver and are distinct from stellate cells. They differentiate into fibrogenic myofibroblasts during chronic injury states producing high levels of collagen.
2022-03-17T12:00:44Z
portal fibroblast
hepatic portal fibroblast
A fibroblast located in the portal triad. Hepatic portal fibroblast are a non-parenchymal cell population located adjacent to bile duct epithelia in liver and are distinct from stellate cells. They differentiate into fibrogenic myofibroblasts during chronic injury states producing high levels of collagen.
PMID:20209607
PMID:24814904
https://orcid.org/0000-0001-7655-4833
A stromal cell that is part_of a bone marrow.
bone marrow stromal cell
stromal cell of bone marrow
Any blood vessel endothelial cell that is part of some heart.
cardiac blood vessel endothelial cell
Any blood vessel endothelial cell that is part of some heart.
FBC:Autogenerated
Any cell that is part of some His-Purkinje system.
His-Purkinje system cell
Any cell that is part of some His-Purkinje system.
FBC:Autogenerated
Any endothelial cell that is part of some heart.
https://cellxgene.cziscience.com/cellguide/CL_0010008
cardiac endothelial cell
Any endothelial cell that is part of some heart.
FBC:Autogenerated
Any photoreceptor cell that is part of some camera-type eye.
camera type eye photoreceptor cell
camera-type eye photoreceptor cell
https://github.com/obophenotype/cell-ontology/issues/2245
Any photoreceptor cell that is part of some camera-type eye.
FBC:Autogenerated
A zygote in a plant or an animal.
MESH:D015053
zygote
Any glial cell that is part of some heart.
cardiac glial cell
Any glial cell that is part of some heart.
FBC:Autogenerated
Any myoblast that develops into some cardiac muscle cell.
MESH:D032386
cardiac myoblast
Any myoblast that develops into some cardiac muscle cell.
FBC:Autogenerated
A neuron that has its soma in the heart.
This term is used in 3 GO terms that were created as part of the heart development focus project.
cardiac neuron
https://github.com/obophenotype/cell-ontology/pull/1488
A neuron that has its soma in the heart.
PMID:12486170
PMID:29265764
A motor neuron that passes from the spinal cord toward or to a muscle and conducts an impulse that causes movement.
spinal cord motor neuron
true
A motor neuron that passes from the spinal cord toward or to a muscle and conducts an impulse that causes movement.
GOC:nv
A cell in the area of mesoderm in the neurulating embryo that flanks and forms simultaneously with the neural tube. The cells of this region give rise to somites.
paraxial mesoderm cell
somitic mesoderm cell
presomitic mesoderm cell
paraxial cell
A cell in the area of mesoderm in the neurulating embryo that flanks and forms simultaneously with the neural tube. The cells of this region give rise to somites.
GOC:NV
PMID:11687492
A cell of the neural crest. Neural crest cells are multipotent. Premigratory neural crest cells are found at the neural plate boarder, some of which will undergo ectomesynchymal transition and delamination to form migratory neural crest cells.
https://cellxgene.cziscience.com/cellguide/CL_0011012
neural crest cell
A cell of the neural crest. Neural crest cells are multipotent. Premigratory neural crest cells are found at the neural plate boarder, some of which will undergo ectomesynchymal transition and delamination to form migratory neural crest cells.
https://orcid.org/0000-0001-5208-3432
https://orcid.org/0000-0002-9900-7880
A mesothelial cell that is part of the epicardium.
mesothelial cell of epicardium
A fibroblast that is part of upper back skin.
fibroblast of upper back skin
A fibroblast that is part of skin of back.
fibroblast of skin of back
A precursor cell that has a tendency to differentiate into a specific type of cell. They are descendants of stem cells, only they are more constrained in their differentiation potential or capacity for self-renewal, and are often more limited in both senses.
progenitor cell
A precursor cell that has a tendency to differentiate into a specific type of cell. They are descendants of stem cells, only they are more constrained in their differentiation potential or capacity for self-renewal, and are often more limited in both senses.
ISBN:978-1-62808-994-3
https://doi.org/10.1016/B978-0-12-409503-8.00002-0
Any fibroblast that is part of skeletal muscle tissue.
https://cellxgene.cziscience.com/cellguide/CL_0011027
skeleton muscle fibroblast
skeletal muscle fibroblast
Any fibroblast that is part of skeletal muscle tissue.
PMID:28369879
https://orcid.org/0000-0001-6164-0667
Any microvascular endothelial cell that is part of the dermis.
DMEC cell
dermal microvascular endothelium cell
dermal microvascular endothelial cell
Any microvascular endothelial cell that is part of the dermis.
BTO:0004574
CL:patterns/cellPartOfAnatomicalEntity
Epithelial cell that is part of the colon epithelium.
colonic epithelial cell
colon epithelial cell
Epithelial cell that is part of the colon epithelium.
GOC:NV
A cell that, by division or terminal differentiation, can give rise to other cell types.
Work is needed on GO 'cell differentiation' before it is clear whether the equivalent class definition 'native cell' that capable_of some 'cell differentiation' works. Also, may want to consider merging this with non-terminally differentiated cell.
precursor cell
A cell that, by division or terminal differentiation, can give rise to other cell types.
GOC:dos
Cytoplasm that exhibits a characteristic staining and color, red or pink, with Eosin stain.
2009-12-22T04:23:25Z
eosinophilic
acidophilic cytoplasm
Cytoplasm that exhibits a characteristic staining and color, red or pink, with Eosin stain.
GOC:add
Cytoplasm that exhibits molecular interaction for basic dyes under specific pH conditions.
2009-12-22T04:24:54Z
basophilic cytoplasm
Cytoplasm that exhibits molecular interaction for basic dyes under specific pH conditions.
GOC:tfm
Cytoplasm that exhibits affinity for both basic and acid stains under specific pH conditions.
2009-12-28T04:25:23Z
polychromatophilic cytoplasm
Cytoplasm that exhibits affinity for both basic and acid stains under specific pH conditions.
GOC:tfm
Any serous secreting cell that is part of the tracheobronchial epithelium.
2020-05-07T16:03:27Z
https://cellxgene.cziscience.com/cellguide/CL_0019001
serous cell of tracheobronchial tree
tracheobronchial serous cell
Any chondrocyte that is part of the tracheobronchial tree.
2020-05-07T17:29:51Z
chondrocyte of tracheobronchial tree
tracheobronchial chondrocyte
A smooth muscle cell that is part of any blood vessel.
2020-07-21T12:42:48Z
smooth muscle cell of blood vessel
blood vessel smooth muscle cell
A smooth muscle cell that is part of any blood vessel.
PMID:9108778
A smooth muscle cell that is part of the tracheobronchial tree.
2020-07-21T12:50:22Z
https://cellxgene.cziscience.com/cellguide/CL_0019019
smooth muscle cell of tracheobronchial tree
The marker set ACTA2, TAGLN can identify the Human cell type tracheobronchial smooth muscle cell in the Lung with a confidence of 0.69 (NS-Forest FBeta value).
tracheobronchial smooth muscle cell
A smooth muscle cell that is part of the tracheobronchial tree.
PMID:10853867
The marker set ACTA2, TAGLN can identify the Human cell type tracheobronchial smooth muscle cell in the Lung with a confidence of 0.69 (NS-Forest FBeta value).
https://doi.org/10.5281/zenodo.11165918
An epithelial cell of the extrahepatic bile ducts, including the left and right hepatic duct, common hepatic duct, and common bile duct. They are columnar in shape, and have a large nuclear-to-cytoplasmic ratio relative to small/intrahepatic cholangiocytes.
2020-09-03T12:24:24Z
large bile duct cholangiocyte
extrahepatic cholangiocyte
An epithelial cell of the extrahepatic bile ducts, including the left and right hepatic duct, common hepatic duct, and common bile duct. They are columnar in shape, and have a large nuclear-to-cytoplasmic ratio relative to small/intrahepatic cholangiocytes.
PMID:23720296
large bile duct cholangiocyte
PMID:23720296
An endothelial cell found in the periportal region hepatic sinusoid, near the portal triad. The fenestrae of these cells are larger but fewer in number compared with those of endothelial cells near the centrilobular region of the hepatic sinusoid.
2020-09-09T13:56:47Z
EFO:0010705
periportal LSEC
periportal hepatic sinusoidal endothelial cell
endothelial cell of periportal hepatic sinusoid
An endothelial cell found in the periportal region hepatic sinusoid, near the portal triad. The fenestrae of these cells are larger but fewer in number compared with those of endothelial cells near the centrilobular region of the hepatic sinusoid.
PMID:27423426
periportal LSEC
PMID:28287163
periportal hepatic sinusoidal endothelial cell
PMID:30348985
An endothelial cell found in the centrilobular region hepatic sinusoid, near the central vein. The fenestrae of these cells are smaller but more numerous compared with those of endothelial cells near the periportal region of the hepatic sinusoid.
2020-09-10T12:38:29Z
EFO:0010706
central venous hepatic sinusoidal endothelial cell
pericentral LSEC
endothelial cell of pericentral hepatic sinusoid
An endothelial cell found in the centrilobular region hepatic sinusoid, near the central vein. The fenestrae of these cells are smaller but more numerous compared with those of endothelial cells near the periportal region of the hepatic sinusoid.
PMID:27423426
central venous hepatic sinusoidal endothelial cell
PMID:30348985
pericentral LSEC
PMID:28287163
A specialised neuroendocrine cell located in the gastric mucosa that regulates digestive processes including acid secretion and gut motility. This cell stores hormones in large dense core vesicles and synaptic-like microvesicles.
DES cell
diffuse endocrine system cell
stomach neuroendocrine cell
A specialised neuroendocrine cell located in the gastric mucosa that regulates digestive processes including acid secretion and gut motility. This cell stores hormones in large dense core vesicles and synaptic-like microvesicles.
PMID:15153415
DES cell
PMID:15153415
diffuse endocrine system cell
PMID:15153415
A neuroendocrine cell that is part of respiratory epithelium of the lung and is involved in the sensory detection of environmental stimuli, including hypoxia, nicotine and air pressure. Ultrastructurally, this cell type is characterized by the presence of cytoplasmic dense core granules, which are considered the storage sites of amine and peptide hormones. Pulmonary neuroendocrine cells are innervated and appear as solitary cells or as clustered masses, localized at airway bifurcation sites, called neuroepithelial bodies that can release serotonin in response to hypoxia and interact with sensory nerve terminals. Pulmonary neuroendocrine cells also function as reserve stem cells that repair the surrounding epithelium after injury.
https://cellxgene.cziscience.com/cellguide/CL_1000223
lung neuroendocrine cell
PNEC
The marker set CHGA, GRP can identify the Human cell type lung neuroendocrine cell in the Lung with a confidence of 0.94 (NS-Forest FBeta value).
pulmonary neuroendocrine cell
A neuroendocrine cell that is part of respiratory epithelium of the lung and is involved in the sensory detection of environmental stimuli, including hypoxia, nicotine and air pressure. Ultrastructurally, this cell type is characterized by the presence of cytoplasmic dense core granules, which are considered the storage sites of amine and peptide hormones. Pulmonary neuroendocrine cells are innervated and appear as solitary cells or as clustered masses, localized at airway bifurcation sites, called neuroepithelial bodies that can release serotonin in response to hypoxia and interact with sensory nerve terminals. Pulmonary neuroendocrine cells also function as reserve stem cells that repair the surrounding epithelium after injury.
PMID:33355253
doi:10.3109/01902148209069653
doi:10.7554/eLife.78216
lung neuroendocrine cell
PMID:15018448
PNEC
PMID:33355253
The marker set CHGA, GRP can identify the Human cell type lung neuroendocrine cell in the Lung with a confidence of 0.94 (NS-Forest FBeta value).
https://doi.org/10.5281/zenodo.11165918
Any secretory cell that is part of some lung.
lung secretory cell
Any secretory cell that is part of some lung.
FBC:Autogenerated
trophectoderm cell
trophectodermal cell
A smooth muscle cell that is part of the small intestine.
FMA:15050
https://cellxgene.cziscience.com/cellguide/CL_1000275
non-striated muscle fiber of small intestine
smooth muscle cell of small intestine
true
A smooth muscle cell that is part of the small intestine.
GOC:tfm
non-striated muscle fiber of small intestine
FMA:15050
A smooth muscle cell that is part of the duodenum.
FMA:15058
non-striated muscle fiber of duodenum
smooth muscle fiber of duodenum
true
A smooth muscle cell that is part of the duodenum.
GOC:tfm
non-striated muscle fiber of duodenum
FMA:15058
A smooth muscle cell that is part of the large intestine.
FMA:15653
non-striated muscle fiber of large intestine
smooth muscle cell of large intestine
true
A smooth muscle cell that is part of the large intestine.
GOC:tfm
non-striated muscle fiber of large intestine
FMA:15653
A smooth muscle cell that is part of the colon.
FMA:15663
non-striated muscle fiber of colon
smooth muscle cell of colon
A smooth muscle cell that is part of the colon.
GOC:tfm
non-striated muscle fiber of colon
FMA:15663
A smooth muscle cell that is part of the sigmoid colon.
FMA:17521
non-striated muscle fiber of sigmoid colon
smooth muscle cell of sigmoid colon
true
A smooth muscle cell that is part of the sigmoid colon.
GOC:tfm
non-striated muscle fiber of sigmoid colon
FMA:17521
A smooth muscle cell that is part of the rectum.
FMA:17522
non-striated muscle fiber of rectum
smooth muscle fiber of rectum
smooth muscle cell of rectum
A smooth muscle cell that is part of the rectum.
GOC:tfm
non-striated muscle fiber of rectum
FMA:17522
A fibroblast that is part of the areolar connective tissue.
FMA:261279
fibroblast of areolar connective tissue
true
A fibroblast that is part of the areolar connective tissue.
GOC:tfm
A fibroblast that is part of the tunica adventitia of artery.
FMA:261285
fibroblast of tunica adventitia of artery
A fibroblast that is part of the tunica adventitia of artery.
GOC:tfm
A fibroblast that is part of the dense regular elastic tissue.
FMA:261287
fibroblast of dense regular elastic tissue
A fibroblast that is part of the dense regular elastic tissue.
GOC:tfm
An adipocyte that is part of the epicardial fat.
FMA:261293
adipocyte of epicardial fat
epicardial fat cell
epicardial adipocyte
An adipocyte that is part of the epicardial fat.
GOC:tfm
adipocyte of epicardial fat
FMA:261293
epicardial fat cell
FMA:261293
An adipocyte that is part of the epicardial fat of right ventricle.
FMA:261297
epicardial adipocyte of right ventricle
epicardial fat cell of right ventricle
adipocyte of epicardial fat of right ventricle
An adipocyte that is part of the epicardial fat of right ventricle.
GOC:tfm
epicardial adipocyte of right ventricle
FMA:261297
epicardial fat cell of right ventricle
FMA:261297
An adipocyte that is part of the epicardial fat of left ventricle.
FMA:261300
epicardial adipocyte of left ventricle
epicardial fat cell of left ventricle
adipocyte of epicardial fat of left ventricle
An adipocyte that is part of the epicardial fat of left ventricle.
GOC:tfm
epicardial adipocyte of left ventricle
FMA:261300
epicardial fat cell of left ventricle
FMA:261300
A serous secreting cell that is part of the epithelium of trachea.
FMA:263078
https://cellxgene.cziscience.com/cellguide/CL_1000330
serous cell of epithelium of trachea
A serous secreting cell that is part of the epithelium of trachea.
GOC:tfm
A serous secreting cell that is part of the epithelium of bronchus.
FMA:263080
https://cellxgene.cziscience.com/cellguide/CL_1000331
serous cell of epithelium of bronchus
A serous secreting cell that is part of the epithelium of bronchus.
GOC:tfm
A transitional myocyte that is part of the interatrial septum.
FMA:263152
transitional myocyte of interatrial septum
true
A transitional myocyte that is part of the interatrial septum.
GOC:tfm
A transitional myocyte that is part of the interventricular septum.
FMA:263154
transitional myocyte of interventricular septum
true
A transitional myocyte that is part of the interventricular septum.
GOC:tfm
A Purkinje myocyte that is part of the interventricular septum.
FMA:263182
Purkinje myocyte of interventricular septum
true
A Purkinje myocyte that is part of the interventricular septum.
GOC:tfm
An endothelial cell that is part of the hepatic sinusoid. These cells possess flattened areas containing perforations about 0.1 micrometers in diameter, known as fenestrae. The fenestrae are arranged in groups known as sieve plates.
BTO:000125
FMA:62911
https://cellxgene.cziscience.com/cellguide/CL_1000398
LSEC
endotheliocyte of hepatic sinusoid
liver sinusoidal endothelial cell
endothelial cell of hepatic sinusoid
An endothelial cell that is part of the hepatic sinusoid. These cells possess flattened areas containing perforations about 0.1 micrometers in diameter, known as fenestrae. The fenestrae are arranged in groups known as sieve plates.
GOC:tfm
PMID:3926620
LSEC
PMID:30348985
endotheliocyte of hepatic sinusoid
FMA:62911
liver sinusoidal endothelial cell
PMID:30348985
A muscle cell that is part of the sinoatrial node.
FMA:67102
SA nodal myocyte
SA node cardiac muscle cell
sinoatrial node cell
sinoatrial node myocyte
sinuatrial node myocyte
myocyte of sinoatrial node
A muscle cell that is part of the sinoatrial node.
FMA:67102
GOC:tfm
SA nodal myocyte
FMA:67102
SA node cardiac muscle cell
GOC:pr
sinoatrial node cell
GOC:pr
sinuatrial node myocyte
FMA:67102
A muscle cell that is part of the atrioventricular node.
FMA:67106
AV nodal myocyte
AV node cardiac muscle cell
AV node cell
atrioventricular node cell
atrioventricular node myocyte
myocyte of atrioventricular node
A muscle cell that is part of the atrioventricular node.
FMA:67106
GOC:tfm
AV nodal myocyte
FMA:67106
AV node cardiac muscle cell
GOC:pr
AV node cell
GOC:pr
atrioventricular node cell
GOC:pr
atrioventricular node myocyte
FMA:67106
An endothelial cell that is part of the arteriole.
FMA:67760
KUPO:0001097
endothelial cell of arteriole
true
An endothelial cell that is part of the arteriole.
GOC:tfm
A blood vessel endothelial cell that is part of an arterial endothelium.
BTO:0004758
FMA:67761
KUPO:0001095
https://cellxgene.cziscience.com/cellguide/CL_1000413
arterial endothelial cell
endothelial cell of artery
A blood vessel endothelial cell that is part of an arterial endothelium.
GOC:tfm
An endothelial cell that is part of the venule.
FMA:67762
endothelial cell of venule
An endothelial cell that is part of the venule.
GOC:tfm
An epithelial cell that is part of the gallbladder.
FMA:67780
epithelial cell of gallbladder
An epithelial cell that is part of the gallbladder.
GOC:tfm
A somatic stem cell that is part of the epidermis.
FMA:70541
epidermal stem cell
stem cell of epidermis
true
A somatic stem cell that is part of the epidermis.
GOC:tfm
epidermal stem cell
FMA:70541
A smooth muscle cell that is part of the ciliary body.
FMA:70610
https://cellxgene.cziscience.com/cellguide/CL_1000443
smooth muscle cell of ciliary body
ciliary muscle cell
true
A smooth muscle cell that is part of the ciliary body.
GOC:tfm
smooth muscle cell of ciliary body
FMA:70610
A mesothelial cell that is part of the anterior chamber of eyeball.
FMA:70615
mesothelial cell of anterior chamber of eye
A mesothelial cell that is part of the anterior chamber of eyeball.
GOC:tfm
A mesothelial cell that is part of the parietal peritoneum.
FMA:72142
mesothelial cell of parietal peritoneum
A mesothelial cell that is part of the parietal peritoneum.
GOC:tfm
A mesothelial cell that is part of the visceral peritoneum.
FMA:72143
mesothelial cell of visceral peritoneum
A mesothelial cell that is part of the visceral peritoneum.
GOC:tfm
A transitional myocyte that is part of the sinoatrial node.
FMA:83384
transitinal myocyte of sinuatrial node
transitional myocyte of sinoatrial node
true
A transitional myocyte that is part of the sinoatrial node.
GOC:tfm
A Purkinje myocyte that is part of the atrioventricular node.
FMA:83386
Purkinje myocyte of atrioventricular node
true
A Purkinje myocyte that is part of the atrioventricular node.
GOC:tfm
A myocardial endocrine cell that is part of the interventricular septum.
FMA:83390
myocardial endocrine cell of interventricular septum
true
A myocardial endocrine cell that is part of the interventricular septum.
GOC:tfm
An epithelial cell that is part of the bile duct. Cholangiocytes contribute to bile secretion via net release of bicarbonate and water. They are cuboidal epithelium in the small interlobular bile ducts, but become columnar and mucus secreting in larger bile ducts approaching the porta hepatis and the extrahepatic ducts.
FMA:86481
https://cellxgene.cziscience.com/cellguide/CL_1000488
epithelial cell of bile duct
cholangiocyte
true
An epithelial cell that is part of the bile duct. Cholangiocytes contribute to bile secretion via net release of bicarbonate and water. They are cuboidal epithelium in the small interlobular bile ducts, but become columnar and mucus secreting in larger bile ducts approaching the porta hepatis and the extrahepatic ducts.
GOC:tfm
PMID:16550043
PMID:18356246
A mesothelial cell that is part of the peritoneum.
FMA:86736
peritoneal mesothelial cell
mesothelial cell of peritoneum
A mesothelial cell that is part of the peritoneum.
GOC:tfm
peritoneal mesothelial cell
FMA:86736
A mesothelial cell that is part of the pleura.
FMA:86737
https://cellxgene.cziscience.com/cellguide/CL_1000491
pleural mesothelial cell
mesothelial cell of pleura
A mesothelial cell that is part of the pleura.
GOC:tfm
pleural mesothelial cell
FMA:86737
A mesothelial cell that is part of the parietal pleura.
FMA:86738
mesothelial cell of parietal pleura
A mesothelial cell that is part of the parietal pleura.
GOC:tfm
A mesothelial cell that is part of the visceral pleura.
FMA:86739
https://cellxgene.cziscience.com/cellguide/CL_1000493
mesothelial cell of visceral pleura
A mesothelial cell that is part of the visceral pleura.
GOC:tfm
An epithelial cell of the exocrine pancreas.
FMA:70986
exocrine pancreas cell
epithelial cell of exocrine pancreas
An epithelial cell of the exocrine pancreas.
GOC:tfm
The various hormone- or neurotransmitter-secreting cells present throughout the mucosa of the intestinal tract.
https://cellxgene.cziscience.com/cellguide/CL_1001516
intestinal enteroendocrine cell
The various hormone- or neurotransmitter-secreting cells present throughout the mucosa of the intestinal tract.
MP:0010802
The various hormone- or neurotransmitter-secreting cells present throughout the mucosa of the stomach.
stomach enteroendocrine cell
The various hormone- or neurotransmitter-secreting cells present throughout the mucosa of the stomach.
MP:0010803
Any endothelial cell of vascular tree that is part of some lung.
endothelial cell of lung
pulmonary vessel endothelial cell
lung endothelial cell
Any endothelial cell of vascular tree that is part of some lung.
FBC:Autogenerated
Any endothelial cell of vascular tree that is part of some pulmonary artery.
BTO:0001141
PAEC cell
pulmonary artery endothelial cell
Any endothelial cell of vascular tree that is part of some pulmonary artery.
FBC:Autogenerated
PAEC cell
BTO:0001141
A vascular endothelial cell found in colon blood vessels.
CALOHA:TS-2397
colon endothelial cells
colonic endothelial cell
colon endothelial cell
A vascular endothelial cell found in colon blood vessels.
NPX:PDR
https://orcid.org/0000-0001-5208-3432
colon endothelial cells
CALOHA:TS-2397
colonic endothelial cell
CALOHA:TS-2397
Squamous cell of oral epithelium.
CALOHA:TS-1252
oral cavity mucosa squamous cell
oral cavity mucosa squamous epithelial cell
oral mucosa squamous epithelial cell
oral mucosa squamous epithelial cells
oral mucosa squamous cell
Squamous cell of oral epithelium.
NPX:PDR
oral cavity mucosa squamous cell
CALOHA:TS-1252
oral cavity mucosa squamous epithelial cell
CALOHA:TS-1252
oral mucosa squamous epithelial cell
CALOHA:TS-1252
oral mucosa squamous epithelial cells
CALOHA:TS-1252
Glandular cell of colon epithelium. Example: Goblet cells; enterocytes or absorptive cells; enteroendocrine and M cells.
CALOHA:TS-1274
colon glandular cells
colon glandular cell
Glandular cell of colon epithelium. Example: Goblet cells; enterocytes or absorptive cells; enteroendocrine and M cells.
NPX:PDR
colon glandular cells
CALOHA:TS-1274
Glandular cell of duodenal epithelium. Example: Enterocytes, Goblet cells, enteroendocrine cells; Paneth cells; M cells; Brunner's gland cell.
CALOHA:TS-1275
duodenum glandular cells
duodenum secretory cell
Glandular cell of duodenal epithelium. Example: Enterocytes, Goblet cells, enteroendocrine cells; Paneth cells; M cells; Brunner's gland cell.
NPX:PDR
duodenum glandular cells
CALOHA:TS-1275
Glandular cell of gallbladder epithelium.
CALOHA:TS-1278
gall bladder glandular cell
gall bladder glandular cells
gallbladder glandular cells
gallbladder glandular cell
Glandular cell of gallbladder epithelium.
NPX:PDR
gall bladder glandular cell
FMA:7202
gall bladder glandular cells
CALOHA:TS-1278
gallbladder glandular cells
CALOHA:TS-1278
Glandular cell of rectal epithelium. Example: Goblet cell; enterocytes or absorptive cells; enteroendocrine and M cells.
CALOHA:TS-1281
rectal glandular cell
rectum glandular cells
rectum glandular cell
Glandular cell of rectal epithelium. Example: Goblet cell; enterocytes or absorptive cells; enteroendocrine and M cells.
NPX:PDR
rectal glandular cell
CALOHA:TS-1281
rectum glandular cells
CALOHA:TS-1281
A glandular cell found in the epithelium of the small intestine. Example: Enterocytes, Goblet cells, enteroendocrine cells; Paneth cells; M cells; Somatostatin-secreting Cells (D-cells) .
CALOHA:TS-1286
FMA:86928
small intestinal glandular cell
small bowel glandular cell
small intestine glandular cells
small intestine secretory cell
A glandular cell found in the epithelium of the small intestine. Example: Enterocytes, Goblet cells, enteroendocrine cells; Paneth cells; M cells; Somatostatin-secreting Cells (D-cells) .
NCI_Thesaurus:Small_Intestinal_Glandular_Cell
NPX:PDR
small intestinal glandular cell
CALOHA:TS-1286
small bowel glandular cell
CALOHA:TS-1286
small intestine glandular cells
CALOHA:TS-1286
Glandular cell of exocrine pancreas epithelium. Example: pancreatic acinar cell, glandular cells in pancreatic canaliculi, glandular cells in pancreatic ducts.
BTO:0000028
CALOHA:TS-1242
exocrine pancreas glandular cell
pancreas exocrine glandular cells
pancreas exocrine glandular cell
Glandular cell of exocrine pancreas epithelium. Example: pancreatic acinar cell, glandular cells in pancreatic canaliculi, glandular cells in pancreatic ducts.
HPA:HPA
NPX:PDR
exocrine pancreas glandular cell
CALOHA:TS-1242
pancreas exocrine glandular cells
CALOHA:TS-1242
Fibroblast from muscle organ.
CALOHA:TS-0643
muscle fibroblast
Fibroblast from muscle organ.
NPX:PDR
Hematopoietic cells resident in the bone marrow. Include: hematopoietic stem cells (lymphoid stem cells and myeloid stem cells) and the precursor cells for thrombocytes, erythrocytes, basophils, neutrophils, eosinophils, monocytes and lymphocytes.
CALOHA:TS-2109
bone marrow hematopoietic cells
bone marrow poietic cells
bone marrow hematopoietic cell
Hematopoietic cells resident in the bone marrow. Include: hematopoietic stem cells (lymphoid stem cells and myeloid stem cells) and the precursor cells for thrombocytes, erythrocytes, basophils, neutrophils, eosinophils, monocytes and lymphocytes.
NPX:PDR
bone marrow hematopoietic cells
CALOHA:TS-2109
bone marrow poietic cells
CALOHA:TS-2109
An epithelial cell that is specialised for the synthesis and secretion of specific biomolecules.
2024-07-21T09:24:44Z
secretory epithelial cell
An epithelial cell that is specialised for the synthesis and secretion of specific biomolecules.
Any blood vessel endothelial cell that is part of a microvascular endothelium.
2014-06-04T15:07:42Z
CL:2000008
microvascular endothelial cell
Any blood vessel endothelial cell that is part of a microvascular endothelium.
GOC:TermGenie
Any blood vessel endothelial cell that is part of a dermis.
2014-06-04T15:12:06Z
CL:2000010
dermis blood vessel endothelial cell
Any blood vessel endothelial cell that is part of a dermis.
GOC:TermGenie
Any skin fibroblast that is part of a skin of abdomen.
2014-06-04T15:18:16Z
CL:2000013
fibroblast of skin of abdomen
Any skin fibroblast that is part of a skin of abdomen.
GOC:TermGenie
Any lung endothelial cell that is part of a microvascular endothelium.
2014-06-04T16:00:56Z
CL:2000016
lung microvascular endothelial cell
Any lung endothelial cell that is part of a microvascular endothelium.
GOC:TermGenie
Any photoreceptor cell that is part of a compound eye.
2014-06-24T23:16:45Z
CL:2000019
compound eye photoreceptor cell
Any photoreceptor cell that is part of a compound eye.
GOC:TermGenie
Any native cell that is part of a inner cell mass.
2014-06-24T23:16:53Z
CL:2000020
inner cell mass cell
Any native cell that is part of a inner cell mass.
GOC:TermGenie
Any native cell that is part of a cardiac septum.
2014-06-24T23:17:07Z
CL:2000022
cardiac septum cell
Any native cell that is part of a cardiac septum.
GOC:TermGenie
Any neuron that is part of a central nervous system.
2014-06-25T01:17:43Z
CL:2000029
central nervous system neuron
Any neuron that is part of a central nervous system.
GOC:TermGenie
A neuron that is part of a peripheral nervous system.
2014-06-25T02:28:17Z
FMA:84664
PNS neuron
peripheral neuron
CL:2000032
peripheral nervous system neuron
A neuron that is part of a peripheral nervous system.
GOC:TermGenie
ISBN:0721662544
Any fibroblast that is part of a embryo.
2014-07-09T00:12:00Z
CL:2000042
embryonic fibroblast
Any fibroblast that is part of a embryo.
GOC:TermGenie
Any microvascular endothelial cell that is part of a brain.
2014-07-09T00:24:53Z
CL:2000044
brain microvascular endothelial cell
Any microvascular endothelial cell that is part of a brain.
GOC:TermGenie
Any cardiac muscle cell that is part of a cardiac ventricle.
2014-08-12T20:50:28Z
https://cellxgene.cziscience.com/cellguide/CL_2000046
CL:2000046
ventricular cardiac muscle cell
Any cardiac muscle cell that is part of a cardiac ventricle.
GOC:TermGenie
Any motor neuron that is part of a brainstem.
2014-10-02T23:52:53Z
CL:2000047
brainstem motor neuron
Any motor neuron that is part of a brainstem.
GOC:TermGenie
Any fibroblast that is part of a spleen.
2014-10-06T18:58:47Z
CL:2000051
splenic fibroblast
Any fibroblast that is part of a spleen.
GOC:TermGenie
Any endothelial cell that is part of a spleen.
2014-10-06T19:06:04Z
CL:2000053
http://www.sciencellonline.com/site/productInformation.php?keyword=5500
splenic endothelial cell
Any endothelial cell that is part of a spleen.
GOC:TermGenie
Any fibroblast that is part of a female gonad.
2014-10-07T17:57:42Z
CL:2000063
http://www.sciencellonline.com/site/productInformation.php?keyword=7330
ovarian fibroblast
Any fibroblast that is part of a female gonad.
GOC:TermGenie
Any epithelial cell that is part of a female gonad.
2014-10-07T17:59:13Z
CL:2000064
http://www.sciencellonline.com/site/productInformation.php?keyword=7310
ovarian surface epithelial cell
Any epithelial cell that is part of a female gonad.
GOC:TermGenie
Any fibroblast that is part of a cardiac ventricle.
2014-10-07T18:35:38Z
CL:2000066
http://www.sciencellonline.com/site/productInformation.php?keyword=6310
cardiac ventricle fibroblast
Any fibroblast that is part of a cardiac ventricle.
GOC:TermGenie
Any fibroblast that is part of a cardiac atrium.
2014-10-07T18:36:54Z
CL:2000067
http://www.sciencellonline.com/site/productInformation.php?keyword=6320
cardiac atrium fibroblast
Any fibroblast that is part of a cardiac atrium.
GOC:TermGenie
Any fibroblast that is part of a pericardium.
2014-10-07T18:38:06Z
CL:2000068
http://www.sciencellonline.com/site/productInformation.php?keyword=6430
pericardium fibroblast
Any fibroblast that is part of a pericardium.
GOC:TermGenie
Any fibroblast that is part of a gallbladder.
2014-10-07T18:41:43Z
CL:2000069
http://www.sciencellonline.com/site/productInformation.php?keyword=5430
gallbladder fibroblast
Any fibroblast that is part of a gallbladder.
GOC:TermGenie
Any fibroblast that is part of a optic choroid.
2014-10-07T18:50:43Z
CL:2000070
http://www.sciencellonline.com/site/productInformation.php?keyword=6620
optic choroid fibroblast
Any fibroblast that is part of a optic choroid.
GOC:TermGenie
Any microvascular endothelial cell that is part of a adipose tissue.
2014-10-07T22:13:45Z
CL:2000072
http://www.sciencellonline.com/site/productInformation.php?keyword=7200
adipose microvascular endothelial cell
Any microvascular endothelial cell that is part of a adipose tissue.
GOC:TermGenie
Any migratory neural crest cell that is part of a cardiac neural crest.
2014-11-05T01:18:43Z
cardiac neural crest cell
CL:2000073
migratory cardiac neural crest cell
Any migratory neural crest cell that is part of a cardiac neural crest.
GOC:TermGenie
cardiac neural crest cell
PMID:33060096
Any leukocyte that is part of a spleen.
2014-11-05T01:26:50Z
CL:2000074
Splenocytes is a vague term that refers to any one of the different white blood cell types in the spleen. This name is seen many references as such and is not explained further, necessitating a need for this terminology.
splenocyte
Any leukocyte that is part of a spleen.
GOC:TermGenie
Any mesenchymal stem cell of adipose tissue that is part of an abdomen.
2014-12-02T19:10:34Z
mesenchymal stem cell of abdominal adipose
CL:2000080
mesenchymal stem cell of abdominal adipose tissue
Any mesenchymal stem cell of adipose tissue that is part of an abdomen.
GOC:TermGenie
Any fibroblast of lung that is part of a bronchus.
2015-03-31T21:16:22Z
CL:2000093
bronchus fibroblast of lung
Any fibroblast of lung that is part of a bronchus.
GOC:TermGenie
A neuron type that is located in a peripheral nervous system and it transmits sensory information from the peripheral (PNS) to the central nervous system (CNS). A sensory neuron converts physical (light, sound, touch) or chemical (such as taste and smell) stimuli into an electrical signal through a process known as sensory transduction. The function of a sensory neuron is to carry informations from the external environment and internal body conditions to the central nervous system for further processing.
2019-02-25T19:34:33Z
CL:3000004
Typically, a sensory neuron has a pseudounipolar morphology.
peripheral sensory neuron
A neuron type that is located in a peripheral nervous system and it transmits sensory information from the peripheral (PNS) to the central nervous system (CNS). A sensory neuron converts physical (light, sound, touch) or chemical (such as taste and smell) stimuli into an electrical signal through a process known as sensory transduction. The function of a sensory neuron is to carry informations from the external environment and internal body conditions to the central nervous system for further processing.
GOC:CellBLAST
PMID:30096314
PMID:31554486
PMID:35858549
Wikipedia:Sensory_neuron
https://www.britannica.com/science/sensory-neuron
https://www.ncbi.nlm.nih.gov/books/NBK539846/
Typically, a sensory neuron has a pseudounipolar morphology.
Wikipedia:Sensory_neuron
A cell that is part of the brain vasculature.
brain vascular cell
A cell that is part of the brain vasculature.
DOI:10.1101/2022.10.12.511898
A GABAergic inhibitory neuron that is derived from the midbrain.
midbrain-derived inhibitory neuron
A GABAergic inhibitory neuron that is derived from the midbrain.
DOI:10.1101/2022.10.12.511898
A neuron that is part of the somatic sensory system. Somatosensory neurons innervate the skin or integument to detect different types of thermal, chemical, and mechanical touch stimuli.
somatosensory neuron
A neuron that is part of the somatic sensory system. Somatosensory neurons innervate the skin or integument to detect different types of thermal, chemical, and mechanical touch stimuli.
PMID:22865660
Any capillary endothelial cell that is part of a lung.
2021-11-23T02:31:40Z
lung capillary endothelial cell
pulmonary capillary endothelial cell
A(n) neuroendocrine cell that is part of a(n) epithelium of crypt of Lieberkuhn.
neuroendocrine cell of epithelium of crypt of Lieberkuhn
A(n) neuroendocrine cell that is part of a(n) epithelium of crypt of Lieberkuhn.
PMID:31390635
A(n) serous secreting cell that is part of a(n) bronchus submucosal gland.
The marker set PRR4, C6orf58 can identify the Human cell type serous secreting cell of bronchus submucosal gland in the Lung with a confidence of 0.75 (NS-Forest FBeta value).
serous secreting cell of bronchus submucosal gland
A(n) serous secreting cell that is part of a(n) bronchus submucosal gland.
PMID:5487122
PMID:9651178
The marker set PRR4, C6orf58 can identify the Human cell type serous secreting cell of bronchus submucosal gland in the Lung with a confidence of 0.75 (NS-Forest FBeta value).
https://doi.org/10.5281/zenodo.11165918
A(n) vein endothelial cell that is part of a(n) respiratory system.
vein endothelial cell of respiratory system
A(n) vein endothelial cell that is part of a(n) respiratory system.
PMID:34030460
A megakaryocyte that is resident in the lung connective tissue.
2023-03-16T11:31:23Z
lung resident megakaryocyte
lung-resident megakaryocyte
MKL
lung MKs
lung megakaryocyte
A megakaryocyte that is resident in the lung connective tissue.
PMID:33351116
lung resident megakaryocyte
PMID:36524131
lung-resident megakaryocyte
PMID:36524131
MKL
PMID:36524131
lung MKs
PMID:33351116
A mucus secreting cell that is part of a submucosal gland of the trachea.
2023-03-16T13:03:13Z
tracheal submucosal gland mucous cell
mucus secreting cell of trachea gland
A mucus secreting cell that is part of a submucosal gland of the trachea.
PMID:18931053
PMID:29656943
tracheal submucosal gland mucous cell
PMID:18931053
A mucus secreting cell of a submucosal gland of the bronchus.
2023-03-16T15:12:52Z
bronchial gland mucous cell
The marker set BPIFB2 can identify the Human cell type mucus secreting cell of bronchus submucosal gland in the Lung with a confidence of 0.93 (NS-Forest FBeta value).
mucus secreting cell of bronchus submucosal gland
A mucus secreting cell of a submucosal gland of the bronchus.
PMID:19965983
bronchial gland mucous cell
PMID:5487122
The marker set BPIFB2 can identify the Human cell type mucus secreting cell of bronchus submucosal gland in the Lung with a confidence of 0.93 (NS-Forest FBeta value).
https://doi.org/10.5281/zenodo.11165918
A mucus secreting cell of a submucosal gland of the tracheobronchial tree.
2023-04-20T10:55:50Z
mucus secreting cell of tracheobronchial tree submucosal gland
A mucus secreting cell of a submucosal gland of the tracheobronchial tree.
PMID:30864819
A neuron that releases catecholamine as a neurotransmitter.
2023-05-18T12:07:45Z
Frequently used when describing the developing nervous system in zebrafish. A catecholaminergic neuron expresses tyrosine hydroxylase (TH), tyrosine hydroxylase 2 (TH2), aromatic amino acid decarboxylase (AADC), dopamine b-hydroxylase (DBH), and phenylethanolamine-N-methyl transferase (PEMT), which are enzymes necessary for catecholamine synthesis.
catecholaminergic neuron
A neuron that releases catecholamine as a neurotransmitter.
ISBN:0521442516
PMID:12094209
Frequently used when describing the developing nervous system in zebrafish. A catecholaminergic neuron expresses tyrosine hydroxylase (TH), tyrosine hydroxylase 2 (TH2), aromatic amino acid decarboxylase (AADC), dopamine b-hydroxylase (DBH), and phenylethanolamine-N-methyl transferase (PEMT), which are enzymes necessary for catecholamine synthesis.
PMID:10191060
PMID:12128258
PMID:34880760
https://orcid.org/0000-0002-2244-7917
A cell that is adjacent to a vessel. A perivascular cell plays a crucial role in maintaining vascular function and tissue homeostasis. This cell type regulates vessel integrity and flow dynamics.
2023-08-22T13:40:28Z
perivascular cell
A cell that is adjacent to a vessel. A perivascular cell plays a crucial role in maintaining vascular function and tissue homeostasis. This cell type regulates vessel integrity and flow dynamics.
PMID:24928499
PMID:27889329
An endothelial cell that is part of a central vein of liver.
endothelial cell of central vein
endothelial cell of central vein of liver
An endothelial cell that is part of a central vein of liver.
PMID:28287163
endothelial cell of central vein
PMID:28287163
A stem cell that is part of the corneo-scleral limbus. This cell type resides at the basal layer of the epithelium and has a small size and high nuclear to cytoplasmatic ratio (Secker and Daniels, 2009). A limbal stem cell is responsible for corneal epithelial renewal and repair (Li et al., 2023), and to help maintain a clear corneal surface by preventing conjunctival epithelial cells from migrating onto the cornea (Wang et al., 2023).
2024-12-11T13:59:19Z
limbal epithelial stem cell
limbal stem cell
LESC
LSC
limbal epithelial stem cell of cornea
A stem cell that is part of the corneo-scleral limbus. This cell type resides at the basal layer of the epithelium and has a small size and high nuclear to cytoplasmatic ratio (Secker and Daniels, 2009). A limbal stem cell is responsible for corneal epithelial renewal and repair (Li et al., 2023), and to help maintain a clear corneal surface by preventing conjunctival epithelial cells from migrating onto the cornea (Wang et al., 2023).
PMID:20614614
PMID:29105366
PMID:36983561
PMID:37768272
limbal epithelial stem cell
PMID:20614614
limbal stem cell
PMID:17562792
LESC
PMID:20614614
LSC
PMID:36983561
Any mesenchymal stem cell of adipose tissue that is part of an orbital region.
2023-09-18T10:43:00Z
OAMSC
Orbital ASCs
orbital adipose-derived mesenchymal stem cell
mesenchymal stem cell of orbital adipose tissue
Any mesenchymal stem cell of adipose tissue that is part of an orbital region.
OAMSC
PMID:31377878
Orbital ASCs
PMID:30210548
orbital adipose-derived mesenchymal stem cell
PMID:31377878
A fibroblast located in the lamina propria of the intestinal mucosa. This cell expresses PDGFRα and CD81 and is negative for α-smooth muscle actin (α-SMA). This cell is predominantly located in the small intestine adjacent to myofibroblasts surrounding the crypts. It is capable of synthesizing extracellular matrix components and structural proteins such as collagen and elastin.
2024-09-24T15:45:18Z
S1 fibroblast
intestinal lamina propria fibroblast
A fibroblast located in the lamina propria of the intestinal mucosa. This cell expresses PDGFRα and CD81 and is negative for α-smooth muscle actin (α-SMA). This cell is predominantly located in the small intestine adjacent to myofibroblasts surrounding the crypts. It is capable of synthesizing extracellular matrix components and structural proteins such as collagen and elastin.
PMID:21252048
PMID:36032088
S1 fibroblast
PMID:30270042
Any type G enteroendocrine cell that is part of some epithelium of stomach.
2024-10-24T10:43:22Z
type G cell of stomach
Any type G enteroendocrine cell that is part of some epithelium of stomach.
FBC:Autogenerated
A multinucleate cell formed by the fusion of multiple uninuclear cells through plasma membrane fusion. This process leads to a single large cell containing multiple nuclei within a shared cytoplasm.
2024-08-15T10:38:46Z
syncytium
SC
syncytial cell
A multinucleate cell formed by the fusion of multiple uninuclear cells through plasma membrane fusion. This process leads to a single large cell containing multiple nuclei within a shared cytoplasm.
PMID:20851884
Wikipedia:Syncytium
syncytium
WBbt:0008074
SC
PMID:9067520
A capillary endothelial cell that is part of the intestinal villus. This cell is highly fenestrated, with fenestrations most numerous at the villus tips, and plays a vital role in nutrient absorption and maintaining the selective permeability of the intestinal barrier.
2024-09-17T10:03:25Z
villus blood capillary endothelial cells
villus tip endothelial cell
intestinal villus capillary endothelial cell
A capillary endothelial cell that is part of the intestinal villus. This cell is highly fenestrated, with fenestrations most numerous at the villus tips, and plays a vital role in nutrient absorption and maintaining the selective permeability of the intestinal barrier.
PMID:18480313
PMID:35810168
PMID:38051275
villus blood capillary endothelial cells
PMID:35810168
villus tip endothelial cell
PMID:38051275
An epithelial cell that is part of the crypt of Lieberkuhn, originating from intestinal stem cells and giving rise to enteroendocrine cells (EECs). In mouse and human, this cell can be characterized by the expression of Neurog3, and has the ability to proliferate and differentiate into multiple EEC subtypes. Its proliferative potential contributes to crypt growth, distinguishing it from fully differentiated EECs.
2024-09-20T12:13:26Z
EEC Progenitor
The EEC progenitor is also present in other organisms; for example, flies have EEC progenitors but lack intestinal crypts and do not express the same markers. Instead, they are Dl+ and Pros+.
intestinal enteroendocrine progenitor
An epithelial cell that is part of the crypt of Lieberkuhn, originating from intestinal stem cells and giving rise to enteroendocrine cells (EECs). In mouse and human, this cell can be characterized by the expression of Neurog3, and has the ability to proliferate and differentiate into multiple EEC subtypes. Its proliferative potential contributes to crypt growth, distinguishing it from fully differentiated EECs.
PMID:31756561
PMID:32531023
PMID:35913117
PMID:38260422
doi:/10.1038/s41467-021-27901-5
EEC Progenitor
PMID:31756561
The EEC progenitor is also present in other organisms; for example, flies have EEC progenitors but lack intestinal crypts and do not express the same markers. Instead, they are Dl+ and Pros+.
PMID:25670791
A capillary endothelial cell that is part of islet of Langerhans, characterized by a high density of fenestrations —approximately ten times greater than those in exocrine pancreatic capillaries. These fenestrations facilitate efficient hormone exchange, which is essential for maintaining glucose homeostasis. The cell's structure and function are regulated by the local production of vascular endothelial growth factor-A (VEGF-A), which maintains its fenestrated architecture.
2024-09-30T14:36:12Z
islet endothelial cell
pancreatic islet endothelial cell
pancreatic islet capillary endothelial cell
A capillary endothelial cell that is part of islet of Langerhans, characterized by a high density of fenestrations —approximately ten times greater than those in exocrine pancreatic capillaries. These fenestrations facilitate efficient hormone exchange, which is essential for maintaining glucose homeostasis. The cell's structure and function are regulated by the local production of vascular endothelial growth factor-A (VEGF-A), which maintains its fenestrated architecture.
PMID:16607697
PMID:27124642
PMID:28396983
PMID:33200981
islet endothelial cell
PMID:16607697
PMID:28396983
pancreatic islet endothelial cell
PMID:16607697
Any capillary endothelial cell that is part of an endocrine gland.
2024-09-30T15:27:49Z
endocrine gland capillary endothelial cell
Any capillary endothelial cell that is part of an endocrine gland.
PMID:18480313
A fibroblast of the adventitia of a blood vessel. This cell contributes to vascular homeostasis, remodeling, and inflammation by producing extracellular matrix components, cytokines, and growth factors. Adventitial fibroblast can transition into an activated state during injury or disease, marked by increased proliferation, migration, matrix deposition, and contractile protein expression
2024-12-05T11:01:15Z
Single-cell transcriptomics of murine aorta identifies two adventitial fibroblast-specific markers, PDGFRA and DPEP1, which were validated at the protein level by immunohistochemistry and flow cytometry across human and murine arteries, highlighting fibroblast heterogeneity in health and cardiovascular disease (CVD) in humans and mice.
adventitial fibroblast
A fibroblast of the adventitia of a blood vessel. This cell contributes to vascular homeostasis, remodeling, and inflammation by producing extracellular matrix components, cytokines, and growth factors. Adventitial fibroblast can transition into an activated state during injury or disease, marked by increased proliferation, migration, matrix deposition, and contractile protein expression
PMID:28705796
PMID:36718802
Single-cell transcriptomics of murine aorta identifies two adventitial fibroblast-specific markers, PDGFRA and DPEP1, which were validated at the protein level by immunohistochemistry and flow cytometry across human and murine arteries, highlighting fibroblast heterogeneity in health and cardiovascular disease (CVD) in humans and mice.
PMID:36718802
A material entity consisting of exactly one atomic nucleus and the electron(s) orbiting it.
This atom is closely related to ChEBI's atom, but not exactly equivalent to.
atom
A material entity that consists of two or more atoms that are all connected via covalent bonds such that any atom can be transitively connected with any other atom.
This molecular entity is different than ChEBI's 'molecular entity'.
We would like to have cardinality restrictions on the logic, but there are some technical limitations.
molecule
A part of a multicellular organism that is a collection of cell components that are not all contained in one cell.
gross anatomical part
A material entity that is a maximal functionally integrated unit that develops from a program encoded in a genome
'Maximal functionally integrated unit' is intended to express unity, which Barry considers synonymous with BFO 'object'.
Includes virus - we will later have a class for cellular organisms.
organism
A material entity processed by human activity with an intent to produce it.
In the COB 2024 workshop there was much disagreement about this label.
processed material entity
completely executed planned process
A complex of two or more molecular entities that are not covalently bound.
complex of molecules
A process that is initiated by an agent who intends to carry out a plan to achieve an objective through one or more actions as described in a plan specification.
planned process
A planned process that intends to output material entities from input material entities
material processing
A processed material entity which is designed to be capable of a process.
device
A respiratory system disease which involves the lower respiratory tract.
ICD9CM:478.19
SNOMEDCT_US_2021_09_01:195823002
UMLS_CUI:C0029581
disease_ontology
DOID:0050161
lower respiratory tract disease
A respiratory system disease which involves the lower respiratory tract.
url:http://en.wikipedia.org/wiki/lower_respiratory_tract
A heart disease and a myopathy that is characterized by deterioration of the function of the heart muscle.
lschriml
2012-01-03T02:54:11Z
ICD10CM:I42
ICD9CM:425
ICD9CM:425.9
MESH:D009202
NCI:C34830
NCI:C53654
SNOMEDCT_US_2021_09_01:266301006
SNOMEDCT_US_2021_09_01:89461002
SNOMEDCT_US_2021_09_01:89600009
UMLS_CUI:C0033141
UMLS_CUI:C0036529
UMLS_CUI:C0878544
Cardiomyopathies
disease_ontology
DOID:0050700
MESH:D009202 added from NeuroDevNet [WAK].
cardiomyopathy
A heart disease and a myopathy that is characterized by deterioration of the function of the heart muscle.
url:http://en.wikipedia.org/wiki/Cardiomyopathy
url:http://www.nhlbi.nih.gov/health/health-topics/topics/cm/
A glomerulonephritis that is characterized by hardening of the glomerulus in the kidney.
lschriml
2014-04-15T03:40:31Z
disease_ontology
DOID:0050851
glomerulosclerosis
A glomerulonephritis that is characterized by hardening of the glomerulus in the kidney.
url:http://en.wikipedia.org/wiki/Glomerulosclerosis
An infratentorial cancer that is located_in the lower part of the brain and is a type of primitive neuroectodermal tumor.
lschriml
2014-10-06T14:36:37Z
DOID:0060105
DOID:168
DOID:3858
DOID:4981
GARD:7005
ICDO:9470/3
MESH:D008527
MESH:D018242
NCI:C27294
NCI:C3222
NCI:C3716
OMIM:155255
SNOMEDCT_US_2021_09_01:189925001
SNOMEDCT_US_2021_09_01:443333004
UMLS_CUI:C0025149
UMLS_CUI:C0206663
UMLS_CUI:C1334410
CNS PNET
CPNET
brain medulloblastoma
infratentorial primitive neuroectodermal tumor
localized primitive neuroectodermal tumor
disease_ontology
DOID:0050902
OMIM mapping confirmed by DO. [SN].
medulloblastoma
An infratentorial cancer that is located_in the lower part of the brain and is a type of primitive neuroectodermal tumor.
url:http://en.wikipedia.org/wiki/Medulloblastoma
url:http://www.cancer.gov/dictionary?CdrID=45780
url:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3306779/
A disease of mental health that occur during a child's developmental period between birth and age 18 resulting in retarding of the child's psychological or physical development.
disease_ontology
DOID:0060037
developmental disorder of mental health
A disease of mental health that occur during a child's developmental period between birth and age 18 resulting in retarding of the child's psychological or physical development.
url:http://en.wikipedia.org/wiki/Developmental_disorders
A hematologic cancer that affects lymphocytes that reside in the lymphatic system and in blood-forming organs.
DOID:1033
DOID:353
ICD10CM:C85.9
ICDO:9590/3
MESH:D008223
NCI:C3208
NCI:C7065
SNOMEDCT_US_2021_09_01:118600007
SNOMEDCT_US_2021_09_01:414628006
UMLS_CUI:C0024299
UMLS_CUI:C0598798
lymphoid cancer
disease_ontology
DOID:0060058
lymphoma
A hematologic cancer that affects lymphocytes that reside in the lymphatic system and in blood-forming organs.
url:http://en.wikipedia.org/wiki/Lymphoma
url:http://www.lymphoma.org/site/pp.asp?c=bkLTKaOQLmK8E&b=6300161
url:http://www.nlm.nih.gov/medlineplus/lymphoma.html
A disease of cellular proliferation that results in abnormal growths in the body, which do not invade or destroy the surrounding tissue but, given enough time, will transform into a cancer.
lschriml
2011-05-11T12:18:41Z
disease_ontology
DOID:0060071
pre-malignant neoplasm
A disease of cellular proliferation that results in abnormal growths in the body, which do not invade or destroy the surrounding tissue but, given enough time, will transform into a cancer.
url:http://en.wikipedia.org/wiki/Neoplasm
A disease of cellular proliferation that results in abnormal growths in the body which lack the ability to metastasize.
lschriml
2011-05-11T12:18:41Z
disease_ontology
DOID:0060072
benign neoplasm
A disease of cellular proliferation that results in abnormal growths in the body which lack the ability to metastasize.
url:http://en.wikipedia.org/wiki/Benign_neoplasm
url:http://www.nlm.nih.gov/medlineplus/benigntumors.html
An eye disease that affects the cornea, which is the transparent surface of the eye that assists in light refraction.
DOID:2284
ICD10CM:H18.9
ICD9CM:371.9
MESH:D003316
NCI:C26731
SNOMEDCT_US_2021_09_01:15250008
UMLS_CUI:C0010034
disease_ontology
DOID:10124
corneal disease
An eye disease that affects the cornea, which is the transparent surface of the eye that assists in light refraction.
url:https://ncit.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NCI_Thesaurus&ns=ncit&code=C26731
A cardiovascular system disease that involves the heart's electrical conduction system.
ICD9CM:426.6
SNOMEDCT_US_2021_09_01:195053008
UMLS_CUI:C0029630
heart rhythm disease
disease_ontology
DOID:10273
heart conduction disease
A cardiovascular system disease that involves the heart's electrical conduction system.
url:http://en.wikipedia.org/wiki/Conduction_system_of_the_heart
A prostate cancer that has_material_basis_in abnormally proliferating cells derives_from epithelial cells.
EFO:0001663
KEGG:05215
NCI:C4863
SNOMEDCT_US_2021_09_01:254900004
UMLS_CUI:C0600139
cancer of prostate
carcinoma of prostate
disease_ontology
DOID:10286
prostate carcinoma
A prostate cancer that has_material_basis_in abnormally proliferating cells derives_from epithelial cells.
url:http://en.wikipedia.org/wiki/Carcinoma
A leukemia that has_material_basis_in a B-cell or T-cell lineage involving primarily the bone marrow and the peripheral blood.
DOID:10747
ICD10CM:C91
ICD9CM:204
ICDO:9820/3
MESH:D007945
NCI:C7539
SNOMEDCT_US_2021_09_01:93170002
UMLS_CUI:C0023448
lymphoblastic leukaemia
lymphoblastic leukemia
lymphocytic leukaemia
disease_ontology
DOID:1037
lymphoid leukemia
A leukemia that has_material_basis_in a B-cell or T-cell lineage involving primarily the bone marrow and the peripheral blood.
url:http://www.cancer.gov/dictionary?CdrID=616067
A lymphocytic leukemia characterized by over production of B-cells and their accumulation in bone marrow and blood.
EFO:0000095
GARD:6104
ICD10CM:C91.10
ICD9CM:204.1
MESH:D015451
NCI:C3163
OMIM:109543
OMIM:151400
OMIM:609630
OMIM:612557
OMIM:612558
OMIM:612559
ORDO:67038
SNOMEDCT_US_2021_09_01:51092000
UMLS_CUI:C0023434
B-cell chronic lymphocytic leukaemia
B-cell chronic lymphocytic leukemia
CLL
chronic lymphatic leukaemia
chronic lymphatic leukemia
chronic lymphocytic leukaemia
lymphoplasmacytic leukaemia
lymphoplasmacytic leukemia
disease_ontology
B-cell chronic lymphoid leukemia
DOID:1040
Xref MGI.
chronic lymphocytic leukemia
A lymphocytic leukemia characterized by over production of B-cells and their accumulation in bone marrow and blood.
url:http://en.wikipedia.org/wiki/B-cell_chronic_lymphocytic_leukemia
url:http://www.cancer.gov/dictionary?cdrid=346545
A gastrointestinal system cancer that is located_in the stomach.
DOID:10539
DOID:10542
DOID:10543
DOID:4713
GARD:7704
ICD10CM:C16
ICD10CM:C16.2
ICD10CM:C16.5
ICD10CM:C16.6
ICD9CM:151
ICD9CM:151.4
ICD9CM:151.5
ICD9CM:151.6
MESH:D013274
NCI:C3387
NCI:C9331
OMIM:613659
SNOMEDCT_US_2021_09_01:126824007
SNOMEDCT_US_2021_09_01:269459004
SNOMEDCT_US_2021_09_01:269460009
SNOMEDCT_US_2021_09_01:93717002
SNOMEDCT_US_2021_09_01:94074003
UMLS_CUI:C0024623
UMLS_CUI:C0038356
UMLS_CUI:C0153421
UMLS_CUI:C0153422
UMLS_CUI:C0153423
gastric cancer
gastric neoplasm
disease_ontology
DOID:10534
OMIM mapping confirmed by DO. [SN].
stomach cancer
A gastrointestinal system cancer that is located_in the stomach.
url:http://cancergenome.nih.gov/cancersselected/stomach-esophagealcancer
url:http://en.wikipedia.org/wiki/Stomach
A tauopathy that is characterized by memory lapses, confusion, emotional instability and progressive loss of mental ability and results in progressive memory loss, impaired thinking, disorientation, and changes in personality and mood starting and leads in advanced cases to a profound decline in cognitive and physical functioning and is marked histologically by the degeneration of brain neurons especially in the cerebral cortex and by the presence of neurofibrillary tangles and plaques containing beta-amyloid.
EFO:0000249
GARD:10254
ICD10CM:G30
ICD9CM:331.0
KEGG:05010
MESH:D000544
NCI:C2866
SNOMEDCT_US_2021_09_01:73768007
UMLS_CUI:C0002395
Alzheimer disease
Alzheimers dementia
disease_ontology
DOID:10652
Xref MGI.
OMIM mapping confirmed by DO. [SN].
Alzheimer's disease
A tauopathy that is characterized by memory lapses, confusion, emotional instability and progressive loss of mental ability and results in progressive memory loss, impaired thinking, disorientation, and changes in personality and mood starting and leads in advanced cases to a profound decline in cognitive and physical functioning and is marked histologically by the degeneration of brain neurons especially in the cerebral cortex and by the presence of neurofibrillary tangles and plaques containing beta-amyloid.
url:http://en.wikipedia.org/wiki/Alzheimer%27s_disease
url:http://www.merriam-webster.com/medical/alzheimer%27s%20disease
url:http://www.nia.nih.gov/alzheimers/publication/alzheimers-disease-fact-sheet
ls:IEDB
An urinary system cancer that results_in malignant growth located_in the urinary bladder.
DOID:5428
GARD:12210
ICD10CM:C67
ICD9CM:188
KEGG:05219
MESH:D001749
NCI:C2901
NCI:C9334
OMIM:109800
SNOMEDCT_US_2021_09_01:126885006
SNOMEDCT_US_2021_09_01:363455001
UMLS_CUI:C0005684
UMLS_CUI:C0005695
bladder cancer
tumor of the bladder
disease_ontology
DOID:11054
OMIM mapping confirmed by DO. [SN].
urinary bladder cancer
An urinary system cancer that results_in malignant growth located_in the urinary bladder.
url:http://en.wikipedia.org/wiki/Bladder_cancer
A cell type cancer that has_material_basis_in abnormally proliferating cells derives from embryonic mesoderm.
DOID:3936
ICD10CM:C49
ICD9CM:171.9
ICDO:8800/3
SNOMEDCT_US_2021_09_01:93765001
UMLS_CUI:C0153519
connective and soft tissue neoplasm
tumor of soft tissue and skeleton
disease_ontology
DOID:1115
sarcoma
A cell type cancer that has_material_basis_in abnormally proliferating cells derives from embryonic mesoderm.
url:http://cancergenome.nih.gov/cancersselected/Sarcoma
url:http://en.wikipedia.org/wiki/Sarcoma
url:http://www.cancer.gov/dictionary?CdrID=45562
A cardiovascular system disease that involves the heart.
ICD10CM:I51.9
ICD9CM:429.9
MESH:D006331
NCI:C3079
SNOMEDCT_US_2021_09_01:194707003
UMLS_CUI:C0018799
disease_ontology
DOID:114
heart disease
A cardiovascular system disease that involves the heart.
url:http://en.wikipedia.org/wiki/Heart_disease
A lower respiratory tract disease that affects the airways leading into the lungs, which is caused due to inflammation of the bronchi and bronchioles, infection, or blockage.
DOID:1175
DOID:12322
MESH:D001982
SNOMEDCT_US_2021_09_01:41427001
UMLS_CUI:C0006261
disease_ontology
DOID:1176
bronchial disease
A lower respiratory tract disease that affects the airways leading into the lungs, which is caused due to inflammation of the bronchi and bronchioles, infection, or blockage.
url:https://www.ncbi.nlm.nih.gov/pubmed/11685087
A cancer that affects the blood or bone marrow characterized by an abnormal proliferation of blood cells.
DOID:9145
ICD10CM:C95.90
ICD9CM:208
ICDO:9800/3
MESH:D007938
NCI:C3161
SNOMEDCT_US_2021_09_01:255049003
UMLS_CUI:C0023418
disease_ontology
DOID:1240
leukemia
A cancer that affects the blood or bone marrow characterized by an abnormal proliferation of blood cells.
url:http://en.wikipedia.org/wiki/Leukemia
url:http://www.cancer.gov/dictionary?CdrID=45343
A hematopoietic system disease that is characterized by abnormal blood clotting or bleeding.
DOID:13997
DOID:2212
DOID:9474
ICD10CM:D68.9
ICD9CM:286
MESH:D001778
NCI:C2902
SNOMEDCT_US_2021_09_01:64779008
UMLS_CUI:C0005779
coagulation protein disease
postpartum coagulation defect
postpartum coagulation defect with delivery
inherited blood coagulation disease
disease_ontology
DOID:1247
blood coagulation disease
A hematopoietic system disease that is characterized by abnormal blood clotting or bleeding.
url:https://www.cedars-sinai.edu/Patients/Health-Conditions/Coagulation-System-Disorders.aspx
A disease of anatomical entity which occurs in the blood, heart, blood vessels or the lymphatic system that passes nutrients (such as amino acids and electrolytes), gases, hormones, blood cells or lymph to and from cells in the body to help fight diseases and help stabilize body temperature and pH to maintain homeostasis.
DOID:73
ICD9CM:429.2
MESH:D002318
NCI:C2931
SNOMEDCT_US_2021_09_01:266275004
UMLS_CUI:C0007222
disease of subdivision of hemolymphoid system
disease_ontology
DOID:1287
cardiovascular system disease
A disease of anatomical entity which occurs in the blood, heart, blood vessels or the lymphatic system that passes nutrients (such as amino acids and electrolytes), gases, hormones, blood cells or lymph to and from cells in the body to help fight diseases and help stabilize body temperature and pH to maintain homeostasis.
url:http://en.wikipedia.org/wiki/Circulatory_system
A cognitive disorder resulting from a loss of brain function affecting memory, thinking, language, judgement and behavior.
ICD9CM:290.8
UMLS_CUI:C0154319
disease_ontology
DOID:1307
dementia
A cognitive disorder resulting from a loss of brain function affecting memory, thinking, language, judgement and behavior.
url:http://www.nlm.nih.gov/medlineplus/ency/article/000739.htm
A central nervous system cancer that is characterized by the growth of abnormal cells in the tissues of the brain.
DOID:2125
DOID:2126
DOID:3543
DOID:6649
DOID:911
ICD10CM:C71
ICD9CM:191
ICD9CM:239.6
MESH:D001932
NCI:C170814
NCI:C2907
NCI:C3568
NCI:C5115
NCI:C7710
SNOMEDCT_US_2021_09_01:126952004
SNOMEDCT_US_2021_09_01:428061005
SNOMEDCT_US_2021_09_01:93727008
UMLS_CUI:C0006118
UMLS_CUI:C0153633
UMLS_CUI:C0220624
UMLS_CUI:C0750974
UMLS_CUI:C0750979
UMLS_CUI:C1334557
BT - Brain tumour
adult brain tumor
adult malignant brain neoplasm
brain neoplasm
brain neoplasm, adult
malignant brain tumour
malignant primary brain neoplasm
malignant primary brain tumor
malignant tumor of Brain
malignant tumor of adult brain
neoplasm of brain
primary brain neoplasm
primary brain tumor
primary malignant neoplasm of brain
tumor of the Brain
disease_ontology
DOID:1319
brain cancer
A central nervous system cancer that is characterized by the growth of abnormal cells in the tissues of the brain.
url:http://www.cancer.gov/dictionary?CdrID=387264
A brain disease that is characterized by loss of structure or function of neurons, including death of neurons and loss of brain tissue.
GARD:6019
ICD9CM:331.9
SNOMEDCT_US_2021_09_01:52522001
UMLS_CUI:C0154671
Brain degeneration
disease_ontology
DOID:1443
cerebral degeneration
A brain disease that is characterized by loss of structure or function of neurons, including death of neurons and loss of brain tissue.
url:https://en.wikipedia.org/wiki/Neurodegeneration
A disease that is characterized by abnormally rapid cell division.
neoplasm
DOID:0000818
cell process disease
neoplasm
disease_ontology
DOID:14566
disease of cellular proliferation
A disease that is characterized by abnormally rapid cell division.
url:http://en.wikipedia.org/w/index.php?title=Cell_proliferation
A disease that involves a psychological or behavioral pattern generally associated with subjective distress or disability that occurs in an individual, and which are not a part of normal development or culture.
ICD10CM:F99
MESH:D001523
NCI:C2893
SNOMEDCT_US_2021_09_01:74732009
UMLS_CUI:C0004936
disease_ontology
DOID:150
disease of mental health
A disease that involves a psychological or behavioral pattern generally associated with subjective distress or disability that occurs in an individual, and which are not a part of normal development or culture.
url:http://en.wikipedia.org/wiki/Mental_disorder
A disease of mental health that involve long-term patterns of thoughts and behaviors that cause serious problems with relationships and work.
ICD9CM:301.8
SNOMEDCT_US_2021_09_01:191770003
UMLS_CUI:C0029707
character disorder
disease_ontology
DOID:1510
personality disorder
A disease of mental health that involve long-term patterns of thoughts and behaviors that cause serious problems with relationships and work.
url:http://www.nlm.nih.gov/medlineplus/personalitydisorders.html
A thoracic disease which may involve inflammation of pleura, collection of air within the pleural cavity, abnormal collection of pleural fluid, abnormal growths on the pleura (pleural tumor) and pleural plaques. The main causes of pleural diseases including pleural effusions are congestive heart failure, malignancy, parapneumonic infections and pulmonary embolism.
DOID:1531
MESH:D010995
NCI:C26859
SNOMEDCT_US_2021_09_01:88075009
UMLS_CUI:C0032226
disorder of pleura
non-neoplastic pleural disease
disease_ontology
DOID:1532
pleural disease
A thoracic disease which may involve inflammation of pleura, collection of air within the pleural cavity, abnormal collection of pleural fluid, abnormal growths on the pleura (pleural tumor) and pleural plaques. The main causes of pleural diseases including pleural effusions are congestive heart failure, malignancy, parapneumonic infections and pulmonary embolism.
url:http://en.wikipedia.org/wiki/Pleural_disease
A disease of mental health that affects cognitive functions including memory processing, perception and problem solving.
ICD10CM:F09
MESH:D019965
NCI:C34870
SNOMEDCT_US_2021_09_01:111479008
UMLS_CUI:C0029227
cognitive disease
disease_ontology
Organic Mental disorder
DOID:1561
cognitive disorder
A disease of mental health that affects cognitive functions including memory processing, perception and problem solving.
url:http://en.wikipedia.org/wiki/Cognitive_disorder
A disease of anatomical entity that located_in the respiratory system which extends from the nasal sinuses to the diaphragm.
DOID:3226
ICD10CM:J98
ICD9CM:519
SNOMEDCT_US_2021_09_01:155603009
UMLS_CUI:C0029582
disease_ontology
DOID:1579
respiratory system disease
A disease of anatomical entity that located_in the respiratory system which extends from the nasal sinuses to the diaphragm.
url:http://en.wikipedia.org/wiki/File:Respiratory_system_complete_en.svg
url:http://www2.merriam-webster.com/cgi-bin/mwmednlm?book=Medical&va=respiratory%20system
A thoracic cancer that originates in the mammary gland.
DOID:1648
DOID:4241
ICD10CM:C50
MESH:D001943
NCI:C9335
OMIM:114480
SNOMEDCT_US_2021_09_01:254837009
UMLS_CUI:C0006142
breast tumor
malignant neoplasm of breast
malignant tumor of the breast
mammary cancer
mammary tumor
primary breast cancer
disease_ontology
mammary neoplasm
DOID:1612
Xref MGI.
OMIM mapping confirmed by DO. [SN].
breast cancer
A thoracic cancer that originates in the mammary gland.
url:http://en.wikipedia.org/wiki/Breast_cancer
url:http://en.wikipedia.org/wiki/Mammary
url:http://www.cancer.gov/cancertopics/types/breast
url:http://www.nlm.nih.gov/medlineplus/breastcancer.html
A disease of cellular proliferation that is malignant and primary, characterized by uncontrolled cellular proliferation, local cell invasion and metastasis.
ICD10CM:C80.1
ICD9CM:199
ICDO:8000/3
MESH:D009369
NCI:C9305
SNOMEDCT_US_2021_09_01:269513004
UMLS_CUI:C0006826
malignant neoplasm
malignant tumor
primary cancer
disease_ontology
DOID:162
Updating out dated UMLS CUI.
cancer
A disease of cellular proliferation that is malignant and primary, characterized by uncontrolled cellular proliferation, local cell invasion and metastasis.
url:http://en.wikipedia.org/wiki/cancer
url:http://www2.merriam-webster.com/cgi-bin/mwmednlm?book=Medical&va=cancer
A cardiovascular system disease that primarily affects the blood vessels which includes the arteries, veins and capillaries that carry blood to and from the heart.
DOID:0000405
DOID:2403
DOID:2869
DOID:324
DOID:325
DOID:45
ICD10CM:I72.9
ICD9CM:442.9
MESH:D000783
MESH:D014652
MESH:D020758
MESH:D020760
NCI:C26693
NCI:C35117
SNOMEDCT_US_2021_09_01:27550009
SNOMEDCT_US_2021_09_01:371029002
SNOMEDCT_US_2021_09_01:432119003
UMLS_CUI:C0002940
UMLS_CUI:C0042373
UMLS_CUI:C0752127
UMLS_CUI:C0752130
vascular tissue disease
disease_ontology
DOID:178
vascular disease
A cardiovascular system disease that primarily affects the blood vessels which includes the arteries, veins and capillaries that carry blood to and from the heart.
url:http://en.wikipedia.org/wiki/Vascular_disease
A pericardium disease that is characterized by an inflammation of the pericardium and has_symptom chest pain.
MESH:D010493
NCI:C34915
SNOMEDCT_US_2021_09_01:3238004
UMLS_CUI:C0031046
disease_ontology
DOID:1787
pericarditis
A pericardium disease that is characterized by an inflammation of the pericardium and has_symptom chest pain.
url:http://en.wikipedia.org/wiki/Pericarditis
A cell type cancer that has_material_basis_in abnormally proliferating cells derives_from melanocytes which are found in skin, the bowel and the eye.
EFO:0000756
ICDO:8720/3
KEGG:05218
MESH:D008545
NCI:C3224
SNOMEDCT_US_2021_09_01:2092003
UMLS_CUI:C0025202
Naevocarcinoma
malignant melanoma
disease_ontology
DOID:1909
melanoma
MESH:D008545
A cell type cancer that has_material_basis_in abnormally proliferating cells derives_from melanocytes which are found in skin, the bowel and the eye.
url:http://en.wikipedia.org/wiki/Melanoma
url:https://www.ncbi.nlm.nih.gov/pubmed/22123420
EFO:0003914
ICD10CM:I70
ICD9CM:440
MESH:D050197
NCI:C35768
SNOMEDCT_US_2021_09_01:155414001
UMLS_CUI:C0004153
disease_ontology
DOID:1936
atherosclerosis
MESH:D050197
A cognitive disorder that involves an excessive, irrational dread of everyday situations.
DOID:12884
ICD10CM:F41.9
MESH:D001008
NCI:C2878
OMIM:607834
SNOMEDCT_US_2021_09_01:65673007
UMLS_CUI:C0003469
anxiety
anxiety state
disease_ontology
DOID:2030
anxiety disorder
A cognitive disorder that involves an excessive, irrational dread of everyday situations.
url:http://www.nimh.nih.gov/health/topics/anxiety-disorders/index.shtml
A female reproductive organ cancer that is located_in the ovary.
DOID:0060070
DOID:2144
DOID:9595
GARD:7295
ICD10CM:C56
ICD9CM:183.0
MESH:D010051
NCI:C4984
NCI:C7431
OMIM:167000
OMIM:607893
ORDO:213500
ORDO:213517
SNOMEDCT_US_2021_09_01:123843001
SNOMEDCT_US_2021_09_01:372117006
SNOMEDCT_US_2021_09_01:93934004
UMLS_CUI:C0919267
UMLS_CUI:C1140680
UMLS_CUI:C1299247
malignant Ovarian tumor
malignant tumour of ovary
ovarian neoplasm
ovary neoplasm
primary ovarian cancer
tumor of the Ovary
disease_ontology
DOID:2394
Xref MGI.
OMIM mapping confirmed by DO. [SN].
ovarian cancer
A female reproductive organ cancer that is located_in the ovary.
url:http://www.cancer.gov/dictionary?CdrID=445074
MESH:D007499
NCI:C34737
SNOMEDCT_US_2021_09_01:85478004
UMLS_CUI:C0022078
disease_ontology
DOID:240
iris disease
A cognitive disorder that involves abnormal thinking and perceptions resulting in a disconnection with reality.
EFO:0000677
ICD9CM:298.8
UMLS_CUI:C0029516
mental or behavioural disorder
disease_ontology
DOID:2468
psychotic disorder
A cognitive disorder that involves abnormal thinking and perceptions resulting in a disconnection with reality.
url:http://www.nlm.nih.gov/medlineplus/psychoticdisorders.html
A skin carcinoma affecting basal cells.
DOID:4275
DOID:4276
EFO:0004193
ICDO:8090/3
KEGG:05217
MESH:D018295
NCI:C156767
NCI:C3784
NCI:C7586
SNOMEDCT_US_2021_09_01:127570002
SNOMEDCT_US_2021_09_01:154507009
SNOMEDCT_US_2021_09_01:252995000
UMLS_CUI:C0007117
UMLS_CUI:C0206710
UMLS_CUI:C1368295
Basal cell cancer
Basal cell carcinoma of skin
Basal cell neoplasm
Basal cell tumor
Epithelioma basal cell
Rodent ulcer
malignant Basal cell neoplasm
malignant basal cell tumor
disease_ontology
DOID:2513
Xref MGI.
basal cell carcinoma
A skin carcinoma affecting basal cells.
url:http://en.wikipedia.org/wiki/Basal-cell_carcinoma
An organ system cancer located in the hematological system that is characterized by uncontrolled cellular proliferation in blood, bone marrow and lymph nodes.
DOID:1034
DOID:2532
MESH:D019337
NCI:C27134
SNOMEDCT_US_2021_09_01:414388001
UMLS_CUI:C0376544
Hematologic malignancy
Hematologic neoplasm
Hematological tumors
blood cancer
hematopoietic and lymphoid system tumor
hematopoietic cancer
hematopoietic neoplasm
hematopoietic tumors
malignant hematopoietic neoplasm
disease_ontology
DOID:2531
hematologic cancer
An organ system cancer located in the hematological system that is characterized by uncontrolled cellular proliferation in blood, bone marrow and lymph nodes.
url:http://en.wikipedia.org/wiki/Blood_cancer
url:http://www.cancer.gov/dictionary/?CdrID=45708
A brain disease that is characterized by damage to brain substance located_in cerebellum; has_symptom ataxia, has_symptom dysarthria, and has_symptom cerebellar cognitive affective syndrome.
MESH:D002526
SNOMEDCT_US_2021_09_01:267691001
UMLS_CUI:C0007760
disease_ontology
DOID:2786
cerebellar disease
A brain disease that is characterized by damage to brain substance located_in cerebellum; has_symptom ataxia, has_symptom dysarthria, and has_symptom cerebellar cognitive affective syndrome.
url:https://en.wikipedia.org/wiki/Cerebellum
url:https://www.ncbi.nlm.nih.gov/pubmed/15377747
A disease of anatomical entity that is located_in endocrine glands which secretes a type of hormone directly into the bloodstream to regulate the body.
ICD10CM:E34.9
ICD9CM:259.9
MESH:D004700
NCI:C3009
SNOMEDCT_US_2021_09_01:67432001
UMLS_CUI:C0014130
disease_ontology
DOID:28
endocrine system disease
A disease of anatomical entity that is located_in endocrine glands which secretes a type of hormone directly into the bloodstream to regulate the body.
url:http://en.wikipedia.org/wiki/Endocrine_system
A nephritis that causes inflammation of the glomeruli located_in kidney.
GARD:6516
ICD10CM:N08
MESH:D005921
NCI:C26784
SNOMEDCT_US_2021_09_01:36171008
UMLS_CUI:C0017658
disease_ontology
DOID:2921
glomerulonephritis
A nephritis that causes inflammation of the glomeruli located_in kidney.
url:http://en.wikipedia.org/wiki/Glomerulonephritis
sn:IEDB
A cell type cancer that has_material_basis_in abnormally proliferating cells derives_from germ cells.
DOID:2157
MESH:D009373
NCI:C3708
SNOMEDCT_US_2021_09_01:302853003
UMLS_CUI:C0205851
malignant tumor of the germ cell
disease_ontology
germ cell neoplasm
germ cell tumour
DOID:2994
germ cell cancer
A cell type cancer that has_material_basis_in abnormally proliferating cells derives_from germ cells.
url:http://en.wikipedia.org/wiki/Germ_cell_tumor
A disease of mental health involving the abuse or dependence on a substance that is ingested in order to produce a high, alter one's senses, or otherwise affect functioning.
MESH:D019966
NCI:C92203
UMLS_CUI:C0236969
disease_ontology
DOID:303
substance-related disorder
A disease of mental health involving the abuse or dependence on a substance that is ingested in order to produce a high, alter one's senses, or otherwise affect functioning.
url:https://www.psychologytoday.com/us/conditions/substance-related-disorders
An obstructive lung disease that is characterized by irreversible airflow obstruction due to chronic bronchitis, emphysema, and/or small airways disease.
DOID:11500
DOID:6144
EFO:0000341
ICD10CM:J44.9
MESH:D029424
NCI:C3199
OMIM:606963
SNOMEDCT_US_2021_09_01:13645005
UMLS_CUI:C0024117
COLD
COPD
chronic obstructive airway disease
chronic obstructive lung disease
disease_ontology
DOID:3083
chronic obstructive pulmonary disease
An obstructive lung disease that is characterized by irreversible airflow obstruction due to chronic bronchitis, emphysema, and/or small airways disease.
url:https://pubmed.ncbi.nlm.nih.gov/28513453/
url:https://www.nhlbi.nih.gov/health-topics/copd
An artery disease that is characterized by plaque building up along the inner walls of the arteries of the heart resulting in a narrowing of the arteries and a reduced blood supply to the cardiac muscles.
DOID:10506
DOID:3363
DOID:3394
DOID:9420
EFO:0001645
ICD10CM:I20-I25
ICD10CM:I25
ICD10CM:I25.10
ICD9CM:410-414.99
ICD9CM:414.0
ICD9CM:414.9
MESH:D003324
MESH:D003327
MESH:D017202
NCI:C35505
NCI:C50625
OMIM:300464
OMIM:607339
OMIM:608316
OMIM:608318
OMIM:608320
OMIM:610947
OMIM:611139
OMIM:612030
OMIM:614293
SNOMEDCT_US_2021_09_01:194852007
SNOMEDCT_US_2021_09_01:233822007
SNOMEDCT_US_2021_09_01:41702007
SNOMEDCT_US_2021_09_01:53741008
UMLS_CUI:C0010054
UMLS_CUI:C0010068
UMLS_CUI:C0151744
UMLS_CUI:C0264694
CHD
Coronary disease
coronary arteriosclerosis
coronary heart disease
disease_ontology
DOID:3393
Xref MGI.
coronary artery disease
An artery disease that is characterized by plaque building up along the inner walls of the arteries of the heart resulting in a narrowing of the arteries and a reduced blood supply to the cardiac muscles.
url:http://en.wikipedia.org/wiki/Coronary_heart_disease
A skin cancer that is located_in tissues of the skin and develops from epithelial cells.
NCI:C4914
UMLS_CUI:C0699893
carcinoma of skin
disease_ontology
DOID:3451
skin carcinoma
A skin cancer that is located_in tissues of the skin and develops from epithelial cells.
url:http://www.cancer.gov/cancertopics/types/skin
A hepatobiliary system cancer that is located_in the liver.
DOID:12300
DOID:269
DOID:7330
DOID:915
DOID:919
ICD10CM:C22.0
ICD10CM:C22.9
ICD9CM:155.0
ICD9CM:155.2
MESH:D008113
NCI:C34803
NCI:C7692
SNOMEDCT_US_2021_09_01:126851005
SNOMEDCT_US_2021_09_01:187771009
SNOMEDCT_US_2021_09_01:93870000
UMLS_CUI:C0023903
UMLS_CUI:C0024620
UMLS_CUI:C0345904
UMLS_CUI:C0854795
Ca liver - primary
Resectable malignant neoplasm of Liver
ca liver - primary
hepatic cancer
hepatic neoplasm
malignant hepato-biliary neoplasm
malignant neoplasm of liver
malignant neoplasm of liver, not specified as primary or secondary
malignant neoplasm of liver, primary
malignant tumor of liver
neoplasm of liver
non-resectable primary hepatic malignant neoplasm
primary liver cancer
primary malignant neoplasm of Liver
primary malignant neoplasm of liver
resectable malignant neoplasm of the liver
disease_ontology
DOID:3571
liver cancer
A hepatobiliary system cancer that is located_in the liver.
url:http://en.wikipedia.org/wiki/Liver
An integumentary system disease that is located_in skin.
DOID:1576
DOID:1698
DOID:187
DOID:6486
DOID:8948
ICD9CM:702
MESH:D012871
MESH:D012873
NCI:C156032
NCI:C3371
SNOMEDCT_US_2021_09_01:201095006
SNOMEDCT_US_2021_09_01:5613003
SNOMEDCT_US_2021_09_01:95320005
UMLS_CUI:C0029574
UMLS_CUI:C0037274
UMLS_CUI:C0037277
Genodermatosis
skin and subcutaneous tissue disease
disease_ontology
DOID:37
skin disease
An integumentary system disease that is located_in skin.
url:http://en.wikipedia.org/wiki/Skin_disease
A disease is a disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism.
MESH:D004194
NCI:C2991
SNOMEDCT_US_2021_09_01:64572001
UMLS_CUI:C0012634
disease_ontology
DOID:4
disease
A disease is a disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism.
url:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3041577/
A gastrointestinal system disease that is located_in the mouth.
MESH:D009059
NCI:C27641
SNOMEDCT_US_2021_09_01:118938008
UMLS_CUI:C0026636
disease_ontology
DOID:403
mouth disease
A gastrointestinal system disease that is located_in the mouth.
url:http://en.wikipedia.org/wiki/Oral_and_maxillofacial_pathology
A heart disease involving one or more of the four valves of the heart (the aortic and mitral valves on the left and the pulmonary and tricuspid valves on the right).
DOID:989
MESH:D006349
MESH:D016127
NCI:C45525
SNOMEDCT_US_2021_09_01:368009
SNOMEDCT_US_2021_09_01:398995000
UMLS_CUI:C0018824
UMLS_CUI:C0079485
Valvular heart disease
disease_ontology
DOID:4079
heart valve disease
A heart disease involving one or more of the four valves of the heart (the aortic and mitral valves on the left and the pulmonary and tricuspid valves on the right).
url:http://en.wikipedia.org/wiki/Heart_valve_disease
DOID:2164
DOID:2165
DOID:46
ICD10CM:K76.9
ICD9CM:573.9
MESH:D008107
NCI:C3196
SNOMEDCT_US_2021_09_01:62857009
UMLS_CUI:C0023895
disorder of liver
hepatic disorder
disease_ontology
DOID:409
liver disease
A disease of mental health that involves physical symptoms suggesting a physical illness where the biological or medical cause of the symptoms is indeterminate.
DOID:10133
DOID:144
ICD10CM:F45
ICD10CM:F45.0
ICD9CM:300.8
ICD9CM:300.81
MESH:D013001
NCI:C34956
SNOMEDCT_US_2021_09_01:192430009
SNOMEDCT_US_2021_09_01:60368009
UMLS_CUI:C0037650
UMLS_CUI:C0520482
physiological malfunction arising from mental factor
psychophysiologic disorder
psychosomatic disorder
disease_ontology
DOID:4737
somatoform disorder
A disease of mental health that involves physical symptoms suggesting a physical illness where the biological or medical cause of the symptoms is indeterminate.
url:http://en.wikipedia.org/wiki/Somatoform_disorder
MESH:D001855
NCI:C34433
SNOMEDCT_US_2021_09_01:127035006
UMLS_CUI:C0005956
bone marrow disorder
disease_ontology
DOID:4961
bone marrow disease
A gastrointestinal system cancer that is located_in the esophagus.
DOID:10291
DOID:10292
DOID:10448
DOID:1102
DOID:1104
GARD:6383
ICD10CM:C15.3
ICD10CM:C15.4
ICD10CM:C15.5
ICD9CM:150.2
ICD9CM:150.3
ICD9CM:150.4
ICD9CM:150.5
ICD9CM:150.8
MESH:D004938
NCI:C3028
NCI:C3533
NCI:C3534
NCI:C3535
NCI:C4764
OMIM:133239
SNOMEDCT_US_2021_09_01:126817006
SNOMEDCT_US_2021_09_01:187729008
SNOMEDCT_US_2021_09_01:93656003
SNOMEDCT_US_2021_09_01:93877002
SNOMEDCT_US_2021_09_01:93895004
SNOMEDCT_US_2021_09_01:94119000
UMLS_CUI:C0014859
UMLS_CUI:C0153413
UMLS_CUI:C0153414
UMLS_CUI:C0153415
UMLS_CUI:C0153416
UMLS_CUI:C0496775
Ca lower third oesophagus
Ca middle third oesophagus
esophagus cancer
malignant neoplasm of distal third of esophagus
malignant neoplasm of lower third of oesophagus
malignant neoplasm of middle third of oesophagus
malignant neoplasm of proximal third of esophagus
malignant neoplasm of upper third esophagus
malignant tumor of Distal Third of esophagus
malignant tumor of Proximal Third of esophagus
malignant tumor of abdominal esophagus
malignant tumor of the middle Third of the esophagus
disease_ontology
DOID:5041
esophageal cancer
A gastrointestinal system cancer that is located_in the esophagus.
url:http://cancergenome.nih.gov/cancersselected/stomach-esophagealcancer
url:http://en.wikipedia.org/wiki/Esophagus
A disease of mental health that involves disruption of sleep patterns.
DOID:9028
ICD9CM:307.4
UMLS_CUI:C0154564
Non-organic sleep disorder
disease_ontology
DOID:535
sleep disorder
A disease of mental health that involves disruption of sleep patterns.
url:http://en.wikipedia.org/wiki/Sleep_disorder
A intestinal disease located in the colon.
DOID:10758
MESH:D003108
SNOMEDCT_US_2021_09_01:128524007
UMLS_CUI:C0009373
colon disorder
disease_ontology
DOID:5353
colonic disease
A intestinal disease located in the colon.
url:https://www.nature.com/subjects/colonic-diseases
A urinary system disease that is located_in the kidney.
DOID:11705
EFO:0003086
ICD10CM:N08
MESH:D007674
NCI:C3149
SNOMEDCT_US_2021_09_01:266612003
UMLS_CUI:C0022658
impaired renal function disease
nephropathy
disease_ontology
DOID:557
kidney disease
A urinary system disease that is located_in the kidney.
url:http://www.nlm.nih.gov/medlineplus/kidneydiseases.html
An eye and adnexa disease that is located_in the eye.
DOID:2933
ICD10CM:H44
ICD9CM:379.90
MESH:D005128
NCI:C26767
SNOMEDCT_US_2021_09_01:371409005
UMLS_CUI:C0015397
disease_ontology
DOID:5614
eye disease
An eye and adnexa disease that is located_in the eye.
url:http://en.wikipedia.org/wiki/Eye_disease
A sarcoma and hematologic cancer that derives_from follicular lymphoma.
NCI:C9294
UMLS_CUI:C1334030
histiocytic and dendritic cell
disease_ontology
DOID:5621
histiocytic and dendritic cell cancer
A sarcoma and hematologic cancer that derives_from follicular lymphoma.
url:http://www.springerlink.com/content/h9wrn7p72x26q035/
DOID:12757
ICD10CM:C69.1
ICD9CM:190.4
NCI:C3565
NCI:C4361
SNOMEDCT_US_2021_09_01:126997008
SNOMEDCT_US_2021_09_01:93766000
UMLS_CUI:C0153629
UMLS_CUI:C0339304
Corneal tumor
malignant Corneal tumor
malignant neoplasm of cornea
malignant tumor of cornea
neoplasm of cornea
disease_ontology
DOID:6199
cornea cancer
A disease that has_material_basis_in genetic variations in the human genome.
MESH:D030342
NCI:C3101
SNOMEDCT_US_2021_09_01:32895009
UMLS_CUI:C0019247
disease_ontology
DOID:630
genetic disease
A disease that has_material_basis_in genetic variations in the human genome.
url:http://ghr.nlm.nih.gov/
A cell type benign neoplasm that is composed_of epithelial tissue in which tumor cells form glands or glandlike structures.
DOID:2655
ICDO:8140/0
MESH:D000236
NCI:C2855
NCI:C4196
SNOMEDCT_US_2021_09_01:443416007
SNOMEDCT_US_2021_09_01:79041005
UMLS_CUI:C0001430
UMLS_CUI:C0334389
acinar cell adenoma
acinic cell adenoma
adenomas
disease_ontology
DOID:657
adenoma
MESH:D000236
A cell type benign neoplasm that is composed_of epithelial tissue in which tumor cells form glands or glandlike structures.
url:http://coloncancer.about.com/od/glossaries/g/Adenoma.htm
url:http://en.wikipedia.org/wiki/Adenoma
A disease that manifests in a defined anatomical structure.
DOID:1
DOID:2
DOID:5
DOID:71
DOID:72
DOID:8
disease_ontology
DOID:7
disease of anatomical entity
A disease that manifests in a defined anatomical structure.
url:http://www2.merriam-webster.com/cgi-bin/mwmednlm?book=Medical&va=anatomic
An immune system disease that is located_in the lymphatic system.
MESH:D008206
SNOMEDCT_US_2021_09_01:266326002
UMLS_CUI:C0024228
Adenopathy
Lymphangiopathy
Lymphatic disease
Lymphatic disorder
disease of lympoid system
disorder of lymph node and lymphatics
disorder of lymphatic system
disorder of lymphoid system
lymphatic disorder
lympoid system disease
disease_ontology
DOID:75
lymphatic system disease
An immune system disease that is located_in the lymphatic system.
url:http://en.wikipedia.org/wiki/Lymphatic_disease
url:http://www.nlm.nih.gov/medlineplus/lymphaticdiseases.html
A leukemia that occurs in children.
NCI:C4989
UMLS_CUI:C1332977
disease_ontology
DOID:7757
childhood leukemia
A leukemia that occurs in children.
url:http://www.nlm.nih.gov/medlineplus/leukemiachildhood.html
A lens disease characterized by clouding of the lens inside the eye which leads to a decrease in vision.
ICD10CM:H26
ICD9CM:366.8
OMIM:601371
OMIM:PS116200
SNOMEDCT_US_2021_09_01:193620000
UMLS_CUI:C0029531
disease_ontology
DOID:83
Xref MGI.
cataract
MESH:D002386
A lens disease characterized by clouding of the lens inside the eye which leads to a decrease in vision.
url:http://en.wikipedia.org/wiki/Cataract
url:https://www.ncbi.nlm.nih.gov/pubmed/10414631
A lower respiratory tract disease in which the function of the lungs is adversely affected by narrowing or blockage of the airways resulting in poor air flow, a loss of elasticity in the lungs that produces a decrease in the total volume of air that the lungs are able to hold, and clotting, scarring, or inflammation of the blood vessels that affect the ability of the lungs to take up oxygen and to release carbon dioxide.
DOID:11894
DOID:11895
DOID:29
DOID:766
ICD10CM:J98.4
MESH:D008171
NCI:C3198
SNOMEDCT_US_2021_09_01:266374002
UMLS_CUI:C0024115
disease_ontology
DOID:850
Updating out dated CUI and removing lung abscess as a synonym.
lung disease
A lower respiratory tract disease in which the function of the lungs is adversely affected by narrowing or blockage of the airways resulting in poor air flow, a loss of elasticity in the lungs that produces a decrease in the total volume of air that the lungs are able to hold, and clotting, scarring, or inflammation of the blood vessels that affect the ability of the lungs to take up oxygen and to release carbon dioxide.
url:http://www.niehs.nih.gov/health/topics/conditions/lung-disease/index.cfm
url:http://www.nlm.nih.gov/medlineplus/ency/article/000066.htm
A myeloid leukemia that is characterized by over production of white blood cells.
DOID:8551
DOID:8606
EFO:0000339
GARD:6105
ICD9CM:205.1
ICDO:9863/3
KEGG:05220
OMIM:608232
ORDO:521
SNOMEDCT_US_2021_09_01:154592009
UMLS_CUI:C0023473
CML
CML - chronic Myelogenous Leukemia
Myeloid Leukemia, chronic
chronic granulocytic leukaemia
chronic granulocytic leukemia
chronic myelogenous leukaemia
chronic myelogenous leukemia
chronic myeloid leukaemia
disease_ontology
DOID:8552
OMIM mapping confirmed by DO. [SN].
chronic myeloid leukemia
A myeloid leukemia that is characterized by over production of white blood cells.
url:http://www.cancer.gov/dictionary?CdrID=46755
A leukemia that is located_in myeloid tissue.
DOID:8878
DOID:8879
DOID:8910
DOID:9066
DOID:9126
GARD:8226
ICD10CM:C92
ICD9CM:205
ICDO:9860/3
MESH:D007951
NCI:C3172
SNOMEDCT_US_2021_09_01:269631008
UMLS_CUI:C0023470
Non-Lymphocytic Leukemia
leukaemia myelogenous
leukemia myelogenous
myeloid granulocytic leukaemia
myeloid granulocytic leukemia
myeloid leukaemia
disease_ontology
DOID:8692
myeloid leukemia
A leukemia that is located_in myeloid tissue.
url:http://en.wikipedia.org/wiki/Myeloid_leukemia
A carcinoma that is an early development defined by the absence of invasion of surrounding tissues.
DOID:8793
DOID:8821
ICD10CM:D09.9
ICD9CM:230-234.99
MESH:D002278
NCI:C2917
SNOMEDCT_US_2021_09_01:109355002
UMLS_CUI:C0007099
disease_ontology
DOID:8719
in situ carcinoma
A carcinoma that is an early development defined by the absence of invasion of surrounding tissues.
url:http://en.wikipedia.org/wiki/Carcinoma_in_situ
An acute myeloid leukemia that derives from blood-forming tissue in which megakaryocytes proliferate in the bone marrow and circulate in the blood in large numbers.
DOID:9009
GARD:524
ICD10CM:C94.2
ICD9CM:207.2
ICDO:9910/3
MESH:D007947
NCI:C3170
SNOMEDCT_US_2021_09_01:52220008
UMLS_CUI:C0023462
Megakaryocytic myelosis
Thrombocytic leukaemia
disease_ontology
DOID:8761
acute megakaryocytic leukemia
An acute myeloid leukemia that derives from blood-forming tissue in which megakaryocytes proliferate in the bone marrow and circulate in the blood in large numbers.
url:https://en.wikipedia.org/wiki/Acute_megakaryoblastic_leukemia
url:https://pubmed.ncbi.nlm.nih.gov/26228843/
url:https://www.orpha.net/data/patho/GB/uk-AMLM7.pdf
A myeloid leukemia that is characterized by the rapid growth of abnormal white blood cells that accumulate in the bone marrow and interfere with the production of normal blood cells.
DOID:9118
DOID:9171
GARD:12757
ICD10CM:C92.0
ICD9CM:205.0
ICDO:9861/3
KEGG:05221
MESH:D015470
NCI:C3171
OMIM:601626
SNOMEDCT_US_2021_09_01:91861009
UMLS_CUI:C0023467
AML - acute Myeloid Leukemia
Leukemia, Myelocytic, acute
acute myeloblastic leukaemia
acute myeloblastic leukemia
acute myelogenous leukaemia
acute myelogenous leukemia
acute myeloid leukaemia
disease_ontology
DOID:9119
OMIM mapping confirmed by DO. [SN].
acute myeloid leukemia
A myeloid leukemia that is characterized by the rapid growth of abnormal white blood cells that accumulate in the bone marrow and interfere with the production of normal blood cells.
url:http://cancergenome.nih.gov/cancersselected/acutemyeloidleukemia
url:http://en.wikipedia.org/wiki/Acute_myeloid_leukemia
url:http://www.cancer.gov/dictionary?cdrid=44363
url:https://www.cancer.org/cancer/acute-myeloid-leukemia/detection-diagnosis-staging/how-classified.html
A large intestine cancer that is located_in the colon and/or located_in the rectum.
ICD10CM:C18.9
KEGG:05210
MESH:D015179
NCI:C2956
NCI:C4978
OMIM:114500
SNOMEDCT_US_2021_09_01:126837005
SNOMEDCT_US_2021_09_01:93854002
UMLS_CUI:C0009404
UMLS_CUI:C0346629
disease_ontology
DOID:9256
Xref MGI.
OMIM mapping confirmed by DO. [SN].
colorectal cancer
A large intestine cancer that is located_in the colon and/or located_in the rectum.
url:http://www.cancer.gov/dictionary?CdrID=444983
A mouth disease that is characterized by inflammation of the mouth and lips.
ICD10CM:K12.1
MESH:D013280
NCI:C26887
SNOMEDCT_US_2021_09_01:95361005
UMLS_CUI:C0038362
disease_ontology
DOID:9637
stomatitis
A mouth disease that is characterized by inflammation of the mouth and lips.
url:https://en.wikipedia.org/wiki/Stomatitis
A acute leukemia that is characterized by over production of lymphoblasts.
DOID:5600
EFO:0000220
GARD:522
ICD10CM:C91.00
ICD9CM:204.0
NCI:C3167
NCI:C7055
OMIM:247640
OMIM:613065
ORDO:513
SNOMEDCT_US_2021_09_01:128822004
UMLS_CUI:C0023449
UMLS_CUI:C1335469
ALL
acute lymphoblastic leukaemia
acute lymphocytic leukaemia
precursor lymphoblastic lymphoma/leukemia
disease_ontology
DOID:9952
Xref MGI.
acute lymphoblastic leukemia
A acute leukemia that is characterized by over production of lymphoblasts.
url:http://www.cancer.gov/dictionary?CdrID=46332
An astrononmical body part which delimited by physical discontinuities with its surroundings.
https://en.wikipedia.org/wiki/Geographic_feature
macroscopic spatial feature
This class is being depopulated and will be filled only with inferred subclasses. Please do not use this for direct annotation, favouring instead a more descriptive subclass.
geographic feature
An anthropogenic geographic feature is a geographic feature resulting from the influence of human beings on nature.
FTT:78
TGN:50001
man-made feature
manmade feature
anthropogenic geographic feature
An anthropogenic geographic feature is a geographic feature resulting from the influence of human beings on nature.
ORCID:0000-0002-4366-3088
Mine tailings are the materials left over after the process of separating the valuable fraction from the uneconomic fraction (gangue) of an ore.
tailing
FTT:625
FTT:631
mine tailing
Mine tailings are the materials left over after the process of separating the valuable fraction from the uneconomic fraction (gangue) of an ore.
https://en.wikipedia.org/wiki/Tailings
tailing
ADL:FTT
A construction which enables the movement of humans, their animals or their vehicles.
FTT:83
transport feature
A construction which enables the movement of humans, their animals or their vehicles.
MA:ma
A geographical feature associated with water.
FTT:131
FTT:280
FTT:711
FTT:761
FTT:824
FTT:825
FTT:826
FTT:827
FTT:828
FTT:829
Geonames:H.OVF
fluvial feature
hydrographic feature
A geographical feature associated with water.
MA:ma
fluvial feature
ADL:FTT
A lentic water body which has been formed as a result of oceanogenesis and constitutes the majority of an astronomical body's hydrosphere.
EcoLexicon:ocean
FTT:1019
FTT:943
Geonames:H.OCN
LTER:695
SWEETRealm:Ocean
TGN:21102
https://en.wikipedia.org/wiki/Ocean
ocean region
As evidence for oceans differing from that of Earth emerge, the label "ocean" may be used for a more general class, with this class being relabelled as "salt-water ocean" or similar. The PURL/PID of this class will remain unchanged. See https://en.wikipedia.org/wiki/Planetary_oceanography
ocean
LTER:695
https://vocab.lternet.edu/vocab/vocab/index.php?tema=695&/oceans
ocean region
ADL:FTT
A lentic water body which is wholly or partly surrounded by land and either connected to or derived from a part of an ocean.
EcoLexicon:sea
FTT:233
FTT:830
Geonames:H.SEA
TGN:21103
https://en.wikipedia.org/wiki/Sea
channel
closed sea
marginal sea
open sea
open sound
open water
sea
A lentic water body which is wholly or partly surrounded by land and either connected to or derived from a part of an ocean.
https://en.wikipedia.org/wiki/Sea
closed sea
USGS:SDTS
marginal sea
USGS:SDTS
open sea
USGS:SDTS
open sound
USGS:SDTS
open water
USGS:SDTS
A geographical feature associated with water with a halinity above 30 ppt (roughly 35 g/L).
ENVO
ENVO:00000017
saline hydrographic feature
A geographical feature associated with water with a halinity above 30 ppt (roughly 35 g/L).
https://en.wikipedia.org/wiki/Salinity
A lake whose water contains a considerable concentration of dissolved salts.
FTT:221
FTT:907
Geonames:H.LKN
Geonames:H.LKSN
TGN:21116
https://en.wikipedia.org/wiki/Saline_lake
salt lake
salina
soda lake
saline lake
A lake whose water contains a considerable concentration of dissolved salts.
MA:ma
salt lake
USGS:SDTS
salina
USGS:SDTS
A body of water or other liquid of considerable size contained in a depression on a landmass.
EcoLexicon:lake
FTT:221
FTT:704
FTT:909
Geonames:H.LK
Geonames:H.LKS
LTER:278
SPIRE:Lake_or_pond
SWEETRealm:Lake
TGN:21114
TGN:21115
catch basin
open water
tarn
broad
llyn
loch
lochan
lough
mere
mortlake
pasteuer lake
lake
A body of water or other liquid of considerable size contained in a depression on a landmass.
https://en.wikipedia.org/wiki/Lake
LTER:278
https://vocab.lternet.edu/vocab/vocab/index.php?tema=278&/lakes
catch basin
USGS:SDTS
open water
USGS:SDTS
tarn
ADL:FTT
lochan
ADL:FTT
mortlake
USGS:SDTS
pasteuer lake
USGS:SDTS
A quarry from which sand is extracted.
https://en.wikipedia.org/wiki/Sand_pit
ENVO
sand pit
ENVO:00000028
sand pit quarry
A quarry from which sand is extracted.
MA:ma
An vegetated area which overlaps a wetland ecosystem.
WetlandRegion
wetland area
An vegetated area which overlaps a wetland ecosystem.
https://en.wikipedia.org/wiki/Wetland
WetlandRegion
NASA:earthrealm
An accumulation of water of varying size.
hydrographic feature
EcoLexicon:waterbody
FTT:131
FTT:280
FTT:827
SWEETRealm:BodyOfWater
TGN:21100
TGN:21101
https://en.wikipedia.org/wiki/Water_body
aquatic feature
bodies of water
body of water
waterbody
The term body of water most often refers to large accumulations of water, such as oceans, seas, and lakes, but it includes smaller pools of water such as ponds, wetlands, or more rarely, puddles. A body of water does not have to be still or contained; Rivers, streams, canals, and other geographical features where water moves from one place to another are also considered bodies of water.
water body
An accumulation of water of varying size.
https://en.wikipedia.org/wiki/Body_of_water
hydrographic feature
ADL:FTT
bodies of water
Getty:TGN
body of water
ADL:FTT
body of water
Getty:TGN
A construction that has been assembled by deliberate human effort.
"constructed" should probably be made something like a quality and this class obsoleted or filled only by inference
constructed feature
Some human constructions (such as the extra-planetary probes built for the Voyager missions) exist outside of Earth's (or any other astrononomical body's) technosphere, and are thus not astronomical body parts. Assertions regarding whether a construction is part of the technosphere of an astronomical body (e.g. Earth) should be made at the instance level, if needed / useful for the application case.
human construction
A construction that has been assembled by deliberate human effort.
MA:ma
A permanent walled and roofed construction.
FTT:42
Geonames:S.BLDG
LTER:76
TGN:51011
https://en.wikipedia.org/wiki/Building
building
A permanent walled and roofed construction.
USGS:SDTS
An excavation in the Earth for the purpose of extracting earth materials.
EcoLexicon:mine
FTT:14
FTT:968
Geonames:L.MNA
Geonames:S.MN
TGN:54211
TGN:54212
mine
An excavation in the Earth for the purpose of extracting earth materials.
USGS:SDTS
https://en.wikipedia.org/wiki/Mine
An ecosystem which either 1) has its functions and composition determined by agricultural processes or entities or 2) is formed as the result of an agricultural land conversion process.
FTT:1246
FTT:1247
FTT:44
FTT:45
FTT:46
FTT:48
FTT:50
FTT:51
FTT:52
FTT:57
FTT:60
FTT:62
FTT:63
FTT:64
FTT:72
FTT:74
Geonames:L.AGRC
Geonames:L.RESA
Geonames:S.NSY
TGN:55001
barn
cattle dipping tank
corral
dairy
feedlot
grange
grazing allotment
irrigated field
nursery
pastoral site
sheepfold
stockyard
AgriculturalLands
agricultural colony
agricultural facility
agricultural land
agricultural reserve
agricultural site
As with other classes that are "features", the subclasses of this class are being moved to more informative locations. Their relation to agriculture will be modelled by something more akin to a quality or relation to an agricultural process.
agricultural ecosystem
barn
ADL:FTT
cattle dipping tank
ADL:FTT
corral
ADL:FTT
dairy
ADL:FTT
feedlot
ADL:FTT
grange
ADL:FTT
grazing allotment
ADL:FTT
irrigated field
ADL:FTT
nursery
ADL:FTT
nursery
Geonames:feature
pastoral site
ADL:FTT
sheepfold
ADL:FTT
stockyard
ADL:FTT
AgriculturalLands
NASA:earthrealm
agricultural colony
Geonames:feature
agricultural facility
ADL:FTT
agricultural land
Getty:TGN
agricultural reserve
ADL:FTT
agricultural reserve
Geonames:feature
agricultural site
ADL:FTT
A region rendered barren or partially barren by environmental extremes, especially by low rainfall.
EcoLexicon:desert
FTT:1
FTT:188
Geonames:T.DSRT
LTER:147
SWEETRealm:Desert
TGN:21201
https://en.wikipedia.org/wiki/Desert
arid region
desert area
A region rendered barren or partially barren by environmental extremes, especially by low rainfall.
USGS:SDTS
arid region
ADL:FTT
A depression which has been formed as a result of erosion by water or ice and which is low-lying, bordered by higher ground, and especially elongate.
EcoLexicon:valley
FTT:158
FTT:166
FTT:418
FTT:761
FTT:811
FTT:949
Geonames:T.GRGE
Geonames:T.VAL
Geonames:T.VALS
SWEETRealm:Valley
TGN:21425
TGN:21451
TGN:21452
TGN:21453
chasm
coulee
dale
glacial gorge
glacial trough
gulch
gully
median valley
shelf valley
glen
goe
gorge
graben
hollow
lavaka
moat
ravine
re-entrant
seachannel
strath
trench
vale
water gap
Valleys are typically located between hills our mountains.
valley
A depression which has been formed as a result of erosion by water or ice and which is low-lying, bordered by higher ground, and especially elongate.
ADL:FTT
https://en.wikipedia.org/wiki/Valley
chasm
USGS:SDTS
coulee
USGS:SDTS
dale
USGS:SDTS
glacial gorge
USGS:SDTS
glacial trough
USGS:SDTS
gulch
USGS:SDTS
gully
Getty:TGN
gully
USGS:SDTS
median valley
ADL:FTT
median valley
Geonames:feature
shelf valley
Geonames:feature
glen
ADL:FTT
glen
USGS:SDTS
goe
USGS:SDTS
gorge
Geonames:feature
gorge
USGS:SDTS
graben
USGS:SDTS
hollow
ADL:FTT
hollow
Getty:TGN
hollow
USGS:SDTS
moat
USGS:SDTS
ravine
USGS:SDTS
re-entrant
USGS:SDTS
seachannel
USGS:SDTS
strath
USGS:SDTS
trench
USGS:SDTS
water gap
USGS:SDTS
An area in which grasses (Graminae) are a significant component of the vegetation.
grazing area
herbaceous area
grassland area
An area in which grasses (Graminae) are a significant component of the vegetation.
https://en.wikipedia.org/wiki/Grassland
grazing area
Getty:TGN
herbaceous area
USGS:SDTS
Land having a cover of trees, shrubs, or both.
FTT:1083
FTT:505
FTT:506
FTT:719
FTT:774
Geonames:V.GRVPN
LTER:503
SWEETRealm:Break
SWEETRealm:Scrub
TGN:21631
TGN:21632
TGN:21641
https://en.wikipedia.org/wiki/Woodland
brigalow
pine grove
caatinga
chanaral
coniferous forest
copse
deciduous forest
equatorial forest
equatorial rain forest
garique
grove
jungle
mallee scrub
monsoon forest
moor
mott
motte
mulga
mulga scrub
rain forest
reforested area
sagebrush
scrub
shrub
silva
stand
taiga
thicket
thorn forest
wood
wooded area
woodland area
Land having a cover of trees, shrubs, or both.
USGS:SDTS
brigalow
USGS:SDTS
pine grove
Geonames:feature
caatinga
USGS:SDTS
chanaral
USGS:SDTS
coniferous forest
USGS:SDTS
copse
USGS:SDTS
deciduous forest
USGS:SDTS
equatorial forest
USGS:SDTS
equatorial rain forest
USGS:SDTS
garique
USGS:SDTS
grove
ADL:FTT
grove
USGS:SDTS
jungle
Getty:TGN
jungle
USGS:SDTS
mallee scrub
USGS:SDTS
monsoon forest
USGS:SDTS
moor
USGS:SDTS
motte
USGS:SDTS
mulga
USGS:SDTS
mulga scrub
USGS:SDTS
rain forest
ADL:FTT
rain forest
Getty:TGN
reforested area
USGS:SDTS
sagebrush
USGS:SDTS
scrub
USGS:SDTS
shrub
USGS:SDTS
silva
USGS:SDTS
stand
USGS:SDTS
taiga
USGS:SDTS
thicket
USGS:SDTS
thorn forest
USGS:SDTS
wood
Getty:TGN
wooded area
USGS:SDTS
An area with a high density of trees. A small forest may be called a wood.
EcoLexicon:forest
FTT:258
FTT:506
FTT:715
FTT:717
Geonames:V.FRST
LTER:2
SWEETRealm:Forest
TGN:21641
TGN:21642
TGN:21645
https://en.wikipedia.org/wiki/Forest
forest
wood
The definitions of forest can vary greatly, and different classes will be needed to support the major categories. Tree cover alone is not enough to distinguish between forests and plantations. The international definition proposed by the 2010 FAO Forestry Resource Assessment: "land spanning more than 0.5 ha with trees higher than 5 metres and canopy cover of more than 10 percent, or trees able to reach these thresholds in situ . It does not include land that is predominantly under agricultural or urban land use." - FAO. 2010. Global forest resources assessment 2010, Main report, FAO Forestry Paper 163. Rome.
forested area
An area with a high density of trees. A small forest may be called a wood.
https://en.wikipedia.org/wiki/Forest
forest
Geonames:feature
wood
Getty:TGN
A field which is located on land and used for agricultural purposes, such as the grazing of livestock or the cultivation of crops.
agricultural site
EcoLexicon:field
FTT:45
FTT:61
Geonames:L.FLD
SWEETRealm:Field
TGN:21456
cropland
grassland
agricultural field
A field which is located on land and used for agricultural purposes, such as the grazing of livestock or the cultivation of crops.
https://en.wikipedia.org/wiki/Field_%28agriculture%29
agricultural site
ADL:FTT
cropland
USGS:SDTS
grassland
USGS:SDTS
A valley which no longer has water flowing or accumulating over its surface.
https://en.wikipedia.org/wiki/Dry_valley
Typically found in either Karst (limestone) or chalk terrain.
dry valley
A valley which no longer has water flowing or accumulating over its surface.
https://en.wikipedia.org/wiki/Dry_valley
An environmental material which is 1) composed primarily of soil or rock and included ice or organic material and 2) at or below the freezing point of water for two or more years.
LTER:408
https://en.wikipedia.org/wiki/Permafrost
Ice is not always present, as may be in the case of nonporous bedrock, but it frequently occurs and it may be in amounts exceeding the potential hydraulic saturation of the ground material.
permafrost
An environmental material which is 1) composed primarily of soil or rock and included ice or organic material and 2) at or below the freezing point of water for two or more years.
https://en.wikipedia.org/wiki/Permafrost
The region occupied by any more or less continuous, directed movement of ocean water that flows in one of the Earth's oceans. Ocean Currents are rivers of hot or cold water within the ocean. The currents are generated from the forces acting upon the water like the earth's rotation, the wind, the temperature and salinity differences and the gravitation of the moon. The depth contours, the shoreline and other movements influence the direction and strength of the movements of water that forms a given current.
current
EcoLexicon:ocean_current
FTT:597
FTT:598
Geonames:H.CRNT
LTER:386
SWEETRealm:OceanCurrent
TGN:21169
https://en.wikipedia.org/wiki/Ocean_current
Subclasses of this class are to be populated by inference. Definition modified from http://en.wikipedia.org/wiki/Ocean_current.
ocean current
The region occupied by any more or less continuous, directed movement of ocean water that flows in one of the Earth's oceans. Ocean Currents are rivers of hot or cold water within the ocean. The currents are generated from the forces acting upon the water like the earth's rotation, the wind, the temperature and salinity differences and the gravitation of the moon. The depth contours, the shoreline and other movements influence the direction and strength of the movements of water that forms a given current.
BS:bs
current
ADL:FTT
current
Geonames:feature
current
Getty:TGN
A landform elevated above the surrounding area.
elevation
LTER:177
SWEETRealm:Elevation
https://en.wikipedia.org/wiki/Elevation
elevated landform
A landform elevated above the surrounding area.
MA:ma
A part of an astronomical body which is primarily composed of solid material.
EcoLexicon:landform
EcoLexicon:landforms
FTT:754
FTT:96
SWEETRealm:Landform
TGN:21400
TGN:21401
geological feature
landform
physiographic feature
solid astronomical body part
A part of an astronomical body which is primarily composed of solid material.
https://en.wikipedia.org/wiki/Landform
geological feature
ADL:FTT
A wetland ecosystem in which land mass is permanently inundated by shallow bodies of water, generally with a substantial number of hummocks, or dry-land protrusions.
wetland
EcoLexicon:swamp
FTT:1226
FTT:185
FTT:480
Geonames:H.SWMP
SPIRE:Swamp
SWEETRealm:Swamp
TGN:21324
https://en.wikipedia.org/wiki/Swamp
Swamp
swamp
cienaga
swamp ecosystem
A wetland ecosystem in which land mass is permanently inundated by shallow bodies of water, generally with a substantial number of hummocks, or dry-land protrusions.
https://en.wikipedia.org/wiki/Swamp
wetland
ADL:FTT
wetland
USGS:SDTS
Swamp
NASA:earthrealm
swamp
Geonames:feature
cienaga
ADL:FTT
A valley that contains, or contained, a glacier and was formed by glacial activity. Typically U-shaped in cross-section.
https://en.wikipedia.org/wiki/Glacial_valley
ENVO
valley
ENVO:00000248
glacial valley
A valley that contains, or contained, a glacier and was formed by glacial activity. Typically U-shaped in cross-section.
MA:ma
valley
USGS:SDTS
A terrestrial ecosystem which has its composition and function determined by an unbroken herbaceous layer - primarily composed of grasses, sedges, or rushes - interspersed with trees or shrubs.
Further axiomatisation is possible with the right taxon imports, but the interspersal semantics may be beyond OWL expressivity.
FTT:259
FTT:770
FTT:771
TGN:21607
Savanna
grassland
savannah
Savannas are intermediate grassland-woodland ecosystems, with some instances having almost no trees and others having trees at densities higher than some forests. Savannas are typically subject to tropical or subtropical climatic conditions. Savannas typically have seasonal water availability and grass, sedge (Cyperaceae) or rush (Juncaceae) communities.
savanna
A terrestrial ecosystem which has its composition and function determined by an unbroken herbaceous layer - primarily composed of grasses, sedges, or rushes - interspersed with trees or shrubs.
Savanna
NASA:earthrealm
grassland
ADL:FTT
grassland
USGS:SDTS
savannah
ADL:FTT
An open-pit mine from which rock or minerals are extracted.
EcoLexicon:quarry
FTT:14
FTT:974
Geonames:S.MNQR
TGN:54217
https://en.wikipedia.org/wiki/Quarry
ENVO
ENVO:00000284
quarry
An open-pit mine from which rock or minerals are extracted.
https://en.wikipedia.org/wiki/Quarry
A field of ice, formed in regions of perennial frost.
FTT:758
FTT:835
FTT:836
FTT:837
FTT:838
FTT:839
FTT:840
FTT:841
FTT:842
SWEETRealm:IceField
TGN:21147
ice patch
iceberg
icefall
IceSheet
ice field
ice sheet
icecap
Ice mass may need to be resolved from ice field, the former referring simply to an accumulation of ice.
ice field
A field of ice, formed in regions of perennial frost.
ADL:FTT
ice patch
ADL:FTT
iceberg
ADL:FTT
icefall
ADL:FTT
IceSheet
NASA:earthrealm
ice field
ADL:FTT
ice sheet
ADL:FTT
icecap
ADL:FTT
Area covered with low-growing or stunted perennial vegetation and usually not mixed with trees.
FTT:1191
FTT:262
FTT:374
FTT:473
FTT:792
FTT:991
Geonames:V.SCRB
SWEETRealm:Scrub
TGN:21644
TGN:21652
https://en.wikipedia.org/wiki/Scrubland
scrubland
bush
chaparal area
heath
scrub
shrubland
scrubland area
Area covered with low-growing or stunted perennial vegetation and usually not mixed with trees.
ADL:FTT
scrubland
Geonames:feature
bush
ADL:FTT
bush
Getty:TGN
chaparal area
ADL:FTT
heath
ADL:FTT
scrub
USGS:SDTS
shrubland
ADL:FTT
shrubland
USGS:SDTS
A landform sunken or depressed below the surrounding area.
Clarify that this pertains to the planetary crust and create superclass for general topological depressions. https://github.com/EnvironmentOntology/envo/issues/486
depression
EcoLexicon:depression
FTT:175
FTT:215
FTT:216
Geonames:T.DPR
Geonames:T.PAN
Geonames:T.PANS
SWEETRealm:Depression
TGN:21454
TGN:21497
TGN:21521
barrier basin
depression
non tidal basin
pan
pan (geologic)
pans
tidal basin
depressed landform
A landform sunken or depressed below the surrounding area.
https://en.wikipedia.org/wiki/Depression_%28geology%29
barrier basin
USGS:SDTS
depression
Geonames:feature
non tidal basin
USGS:SDTS
pan
Geonames:feature
pan
Getty:TGN
pan (geologic)
ADL:FTT
pans
Geonames:feature
tidal basin
USGS:SDTS
A mass of solid material which is composed primarily of rock.
FTT:1010
FTT:145
Geonames:T.RK
Geonames:T.RKS
TGN:21444
piece of rock
A particle which 1) is composed primarily of and derived from rock or mineral sources and 2) is or was part of a portion of sand.
grain of sand
granule of sand
sand granule
In general, sand grains are larger than those of silt, but finer than those of gravel.
particle of sand
A particle which 1) is composed primarily of and derived from rock or mineral sources and 2) is or was part of a portion of sand.
A particle which 1) is primarily composed of quartz or feldspar and 2) is or was part of a portion of silt.
grain of silt
granule of silt
The distinction between silt and clay varies by discipline. Geologists and soil scientists usually consider the separation to occur at a particle size of 2 μm (clays being finer than silts), sedimentologists often use 4–5 μm, and colloid chemists use 1 μm. Geotechnical engineers distinguish between silts and clays based on the plasticity properties of the soil, as measured by the soils' Atterberg limits. ISO 14688 grades clay particles as being smaller than 2 μm and silt particles as being larger. Mixtures of sand, silt and less than 40% clay are called loam.
particle of silt
The distinction between silt and clay varies by discipline. Geologists and soil scientists usually consider the separation to occur at a particle size of 2 μm (clays being finer than silts), sedimentologists often use 4–5 μm, and colloid chemists use 1 μm. Geotechnical engineers distinguish between silts and clays based on the plasticity properties of the soil, as measured by the soils' Atterberg limits. ISO 14688 grades clay particles as being smaller than 2 μm and silt particles as being larger. Mixtures of sand, silt and less than 40% clay are called loam.
grain of desert sand
A biome is an ecosystem which is undergoing climactic ecological succession.
EcoLexicon:biome
LTER:809
major habitat type
EcosytemType
In this definition, there is an assumption that no major perturbations are occurring or have occurred in a time frame affects the successional dynamics of the ecosystem. A "major" perturbation is one which disrupts the community's ability to restore its (near) equilibrium. Usually, pioneer or early secondary successional processes would be in effect in such scenarios.
biome
A biome is an ecosystem which is undergoing climactic ecological succession.
DOI:10.1186/2041-1480-4-43
https://en.wikipedia.org/wiki/Biome
LTER:809
https://vocab.lternet.edu/vocab/vocab/index.php?tema=809&/biomes
major habitat type
WWF:Biome
EcosytemType
NASA:earthrealm
A terrestrial ecosystem which is in its climactic successional state.
LTER:798
SPIRE:Terrestrial
terrestrial biome
A terrestrial ecosystem which is in its climactic successional state.
https://en.wikipedia.org/wiki/Biome#Terrestrial_biomes
A marine ecosystem which is in its climactic successional state.
SPIRE:Marine
This biome includes open-ocean and unprotected coastal ecosystems, characterized by exposure to wave action, tidal fluctuation, and ocean currents as well as systems that largely resemble these. Water in the marine biome is generally within the salinity range of seawater: 30 to 38 ppt.
marine biome
A marine ecosystem which is in its climactic successional state.
ISBN:978-0-618-45504-1
MA:ma
https://en.wikipedia.org/wiki/Ocean
A facility which supports the undertaking of scientific research or measurements.
research facility
A facility which supports the undertaking of scientific research or measurements.
MA:ma
The portion of the ground surface which lies below water.
BOTTOM
EcoLexicon:bed
FTT:804
SWEETRealm:Bottom
https://en.wikipedia.org/wiki/Stream_bed
submerged bed
The portion of the ground surface which lies below water.
USGS:SDTS
BOTTOM
USGS:SDTS
A rock is a naturally occurring solid aggregate of one or more minerals or mineraloids.
EcoLexicon:rock
FTT:1010
FTT:145
Geonames:T.RK
Geonames:T.RKS
SWEETRealm:Rock
TGN:21444
https://en.wikipedia.org/wiki/Rock
From https://en.wikipedia.org/wiki/ [A mineral] is different from a rock, which can be an aggregate of minerals or non-minerals and does not have a specific chemical composition. The exact definition of a mineral is under debate, especially with respect to the requirement a valid species be abiogenic, and to a lesser extent with regards to it having an ordered atomic structure.
rock
A rock is a naturally occurring solid aggregate of one or more minerals or mineraloids.
MA:ma
https://en.wikipedia.org/wiki/Rock_(geology)
An environmental material which is primarily composed of minerals, varying proportions of sand, silt, and clay, organic material such as humus, interstitial gases, liquids, and a broad range of resident micro- and macroorganisms.
The various 'has part' and 'has quality' relations may not hold true for all soils; however, I have yet to find counter examples. Require input from a pedologist or similar. [pbuttigieg]
regolith
LTER:535
SPIRE:Soil
SWEETRealm:Soil
https://en.wikipedia.org/wiki/Soil
'In engineering terms, soil is referred to as regolith, or loose rock material that lies above the 'solid geology'. Soil is commonly referred to as "earth" or "dirt"; technically, the term "dirt" should be restricted to displaced soil.' https://en.wikipedia.org/wiki/Soil
" The upper limit of soil is the boundary between soil and air, shallow water, live plants, or plant materials that have not begun to decompose. Areas are not considered to have soil if the surface is permanently covered by water too deep (typically more than 2.5 meters) for the growth of rooted plants.
The lower boundary that separates soil from the nonsoil underneath is most difficult to define. Soil consists of horizons near the Earth's surface that, in contrast to the underlying parent material, have been altered by the interactions of climate, relief, and living organisms over time. Commonly, soil grades at its lower boundary to hard rock or to earthy materials virtually devoid of animals, roots, or other marks of biological activity. For purposes of classification, the lower boundary of soil is arbitrarily set at 200 cm." Soil taxonomy, 2nd Ed., quoted in http://www.nrcs.usda.gov/wps/portal/nrcs/detail/soils/edu/?cid=nrcs142p2_054280
soil
An environmental material which is primarily composed of minerals, varying proportions of sand, silt, and clay, organic material such as humus, interstitial gases, liquids, and a broad range of resident micro- and macroorganisms.
https://en.wikipedia.org/wiki/Soil
A solid astronomical body part which is part of the planetary surface between the peak of an elevation or the bottom of a depression and relatively flat surrounding land.
EcoLexicon:slope
SWEETRealm:Slope
https://en.wikipedia.org/wiki/Slope
flank
side
slope
A solid astronomical body part which is part of the planetary surface between the peak of an elevation or the bottom of a depression and relatively flat surrounding land.
MA:ma
Water that has been adversely affected in quality by anthropogenic influence.
EcoLexicon:waste_water
SWEETRealm:Wastewater
https://en.wikipedia.org/wiki/Waste_water
ENVO
ENVO:00002001
waste water
Water that has been adversely affected in quality by anthropogenic influence.
https://en.wikipedia.org/wiki/Wastewater
The mixture of gases (roughly (by molar content/volume: 78% nitrogen, 20.95% oxygen, 0.93% argon, 0.038% carbon dioxide, trace amounts of other gases, and a variable amount (average around 1%) of water vapor) that surrounds the planet Earth.
EcoLexicon:air
LTER:18
SWEETRealm:Air
https://en.wikipedia.org/wiki/Air
air
The mixture of gases (roughly (by molar content/volume: 78% nitrogen, 20.95% oxygen, 0.93% argon, 0.038% carbon dioxide, trace amounts of other gases, and a variable amount (average around 1%) of water vapor) that surrounds the planet Earth.
https://en.wikipedia.org/wiki/Air
An environmental material primarily composed of dihydrogen oxide in its liquid form.
water
EcoLexicon:water
LTER:617
https://en.wikipedia.org/wiki/Water
liquid water
An environmental material primarily composed of dihydrogen oxide in its liquid form.
MA:ma
Particulate environmental material which is formed as a result of the transport and deposition of particles by flowing liquid.
EcoLexicon:sediment
EcoLexicon:sedimentation
LTER:492
LTER:493
SWEETRealm:Sediment
https://en.wikipedia.org/wiki/Sediment
Sediment is typically deposited on the bed or bottom of a body of water or other liquid.
sediment
Particulate environmental material which is formed as a result of the transport and deposition of particles by flowing liquid.
https://en.wikipedia.org/wiki/Sediment
Particulate environmental material with diameters less than 500 micrometers.
Do not oversimplify the particulate environmental material subclasses with design patterns or similar. The materials have properties that their components do not - write full definitions including these where possible.
EcoLexicon:dust
SWEETRealm:Dust
https://en.wikipedia.org/wiki/Dust
Dust occurs in and may be deposited from the atmosphere.
dust
Particulate environmental material with diameters less than 500 micrometers.
https://en.wikipedia.org/wiki/Dust
Water which contains a significant concentration of dissolved salts.
EcoLexicon:saltwater
SWEETRealm:SalineWater
SWEETRealm:SaltWater
https://en.wikipedia.org/wiki/Saline_water
salt water
The threshold salt concentration for classifying water as saline varies, but typically begins at about 1,000 to 3,000 parts salt per million parts water or 0.1–0.3% salt by weight.
saline water
A rock formed by deposition of either clastic sediments, organic matter, or chemical precipitates (evaporites), followed by compaction of the particulate matter and cementation during diagenesis.
EcoLexicon:sedimentary_rock
SWEETRealm:SedimentaryRock
https://en.wikipedia.org/wiki/Sedimentary_rock
ENVO
ENVO:00002016
sedimentary rock
A rock formed by deposition of either clastic sediments, organic matter, or chemical precipitates (evaporites), followed by compaction of the particulate matter and cementation during diagenesis.
https://en.wikipedia.org/wiki/Rock_%28geology%29
A biome which is determined by a water body and which has ecological climax communities adapted to life in or on water.
LTER:41
aquatic biome
EcoLexicon:wood
LTER:637
SWEETRealm:Wood
https://en.wikipedia.org/wiki/Wood
ENVO
ENVO:00002040
wood
Sediment which has increased levels of one or more chemical compounds.
chemically enriched sediment
A portion of contaminated soil is a portion of soil with elevated levels of some contaminant.
ENVO
ENVO:00002116
"contaminant" is more of a disposition - any material entity can be a contaminant in particular circumstances.
contaminated soil
Saline water which has has been formed as a result of oceanogenesis and which has its composition and properties maintained through processes including hydrological cycling, continental weathering, porewater burial, mineral deposition, ion exchange reactions, and ecological processes.
When we have more classes representing the various processes which make seawater seawater, we can further axiomatise this class.
EcoLexicon:sea_water
LTER:701
SWEETRealm:SeaWater
https://en.wikipedia.org/wiki/Sea_water
seawater
sea water
This definition is scoped to Earth's ocean, although it may also be applied to other telluric planets, moons, and similar astronomical bodies. As more evidence of other ocean types (and thus ocean water) emerge, this class may be made a subclass of a more general "ocean" class, and its label changed accordingly. This classes PURL / PID will remain stable. https://en.wikipedia.org/wiki/Planetary_oceanography
ocean water
ENVO
ENVO:00002167
platinum mine
https://en.wikipedia.org/wiki/Gold_mine
ENVO
ENVO:00002168
gold mine
https://en.wikipedia.org/wiki/Coal_mine
ENVO
ENVO:00002169
coal mine
A hospital is a building in which health care services are provided by specialized staff and equipment.
https://en.wikipedia.org/wiki/Hospital
hospital
A hospital is a building in which health care services are provided by specialized staff and equipment.
https://en.wikipedia.org/wiki/Hospital
EcoLexicon:water_pollution
https://en.wikipedia.org/wiki/Contaminated_water
polluted water
ENVO
ENVO:00002186
contaminated water
Chemically-enriched sediment which has increased levels of organic compounds.
organically enriched sediment
Chemically-enriched sediment which has increased levels of inorganic compounds.
inorganically enriched sediment
coal mine waste
ENVO
coal refuse
ENVO:00002206
coal mine waste material
A power plant is a building which contains one or more generators which convert mechanical energy into electrical energy through the relative motion between a magnetic field and a conductor. The energy source harnessed to turn the generator varies widely.
SWEETRealm:PowerPlant
https://en.wikipedia.org/wiki/Power_plant
generating plant
generating station
power station
powerhouse
ENVO
ENVO:00002214
power plant
A power plant is a building which contains one or more generators which convert mechanical energy into electrical energy through the relative motion between a magnetic field and a conductor. The energy source harnessed to turn the generator varies widely.
https://en.wikipedia.org/wiki/Power_station
A geothermal power plant is a power plant which uses heat generated by the decay of radioactive isotopes in the Earth's mantle and crust as well as primordial heat left over from the formation of the Earth to drive its generators.
SWEETRealm:GeothermalPowerPlant
https://en.wikipedia.org/wiki/Geothermal_power_plant
ENVO
ENVO:00002215
geothermal power plant
A geothermal power plant is a power plant which uses heat generated by the decay of radioactive isotopes in the Earth's mantle and crust as well as primordial heat left over from the formation of the Earth to drive its generators.
https://en.wikipedia.org/wiki/Earth's_internal_heat_budget
https://en.wikipedia.org/wiki/Geothermal_energy
A portion of soil which is found in a forested area.
forest soil
A material which is not the desired output of a process and which is typically the input of a process which removes it from its producer (e.g. a disposal process).
This seems more like a role than a material. Anything can be waste. Thus, a "waste" role or disposition will be created and this class can then be populated by inference: any environmental material which has [role,disposition] waste will be considered a waste material.
EcoLexicon:waste
SWEETRealm:Waste
https://en.wikipedia.org/wiki/Waste
ENVO
ENVO:00002264
waste material
Industrial wastes are liquid, solid and gaseous wastes originating from the manufacture of specific products.
This will become a defined class, with subclasses added through inference based on material having a 'waste role' and being associated with industrial entities.
industrial waste
ENVO
ENVO:00002267
industrial waste material
Industrial wastes are liquid, solid and gaseous wastes originating from the manufacture of specific products.
ISBN:978-92-1-161386-5
http://stats.oecd.org/glossary/detail.asp?ID=1340
A nuclear power plant is a power plant which uses heat generated by a radioactive decay in a nuclear reactor to convert water into steam in order to drive turbines in electrical generators through pressure.
https://en.wikipedia.org/wiki/Nuclear_power_plant
ENVO
ENVO:00002271
nuclear power plant
A nuclear power plant is a power plant which uses heat generated by a radioactive decay in a nuclear reactor to convert water into steam in order to drive turbines in electrical generators through pressure.
https://en.wikipedia.org/wiki/Nuclear_power_plant
A manufactuered product which is capable of removing heat and controlling the humidity of the air within a site.
A/C
A/C unit
air conditioner
air conditioning unit
A manufactuered product which is capable of removing heat and controlling the humidity of the air within a site.
Particulate environmental material which 1) is composed primarily of clay particles, with only minor proportions of other materials, 2) demonstrates plasticity when wet, and 3) is capable of hardening when dried or fired.
Do not oversimplify the particulate environmental material subclasses with design patterns or similar. The materials have properties that their components do not - write full definitions including these where possible.
EcoLexicon:clay
SWEETRealm:Clay
This definition is intentionally ambiguous to support the multiple thresholds set by different authorities.The distinction between silt and clay varies by discipline. Geologists and soil scientists usually consider the separation to occur at a particle size of 2 μm (clays being finer than silts), sedimentologists often use 4–5 μm, and colloid chemists use 1 μm. Geotechnical engineers distinguish between silts and clays based on the plasticity properties of the soil, as measured by the soils' Atterberg limits. ISO 14688 grades clay particles as being smaller than 2 μm and silt particles as being larger. Mixtures of sand, silt and less than 40% clay are called loam. Similar mixtures with greater than 40% clay are often considered clay soils.
clay
Particulate environmental material which 1) is composed primarily of clay particles, with only minor proportions of other materials, 2) demonstrates plasticity when wet, and 3) is capable of hardening when dried or fired.
https://en.wikipedia.org/wiki/Clay
This definition is intentionally ambiguous to support the multiple thresholds set by different authorities.The distinction between silt and clay varies by discipline. Geologists and soil scientists usually consider the separation to occur at a particle size of 2 μm (clays being finer than silts), sedimentologists often use 4–5 μm, and colloid chemists use 1 μm. Geotechnical engineers distinguish between silts and clays based on the plasticity properties of the soil, as measured by the soils' Atterberg limits. ISO 14688 grades clay particles as being smaller than 2 μm and silt particles as being larger. Mixtures of sand, silt and less than 40% clay are called loam. Similar mixtures with greater than 40% clay are often considered clay soils.
A house used for sheltering non-human animals.
While humans are animals, this class does not refer to human houses.
animal house
A material entity that has been processed by humans or their technology in any way, including intermediate products as well as final products.
manufactured good
manufactured product
A material entity that has been processed by humans or their technology in any way, including intermediate products as well as final products.
https://en.wikipedia.org/wiki/Manufactured_product
A portion of enriched soil is a portion of soil with elevated levels of some material entity.
This could be demoted to an inferred class if issues with double inheritance arise.
enriched soil
An industrial building is a building within which goods are produced and, optionally, stored or within which services are rendered.
It's possible that this will become an inferred class in the future. The United Nations' International Standard Industrial Classification should be referred to when expanding this branch. ISIC can also be used to identify processes. See http://unstats.un.org/unsd/cr/registry/regcst.asp?Cl=27&Lg=1.
industrial building
An industrial building is a building within which goods are produced and, optionally, stored or within which services are rendered.
https://en.wikipedia.org/wiki/Industry
A brewery is a building in which alcoholic beverages are produced by brewing, that is, steeping a starch source (commonly cereal grains) in water and fermenting the resulting sweet liquid with yeast. At times, the products are also sold from the brewery.
ENVO
ENVO:00003885
brewery
A brewery is a building in which alcoholic beverages are produced by brewing, that is, steeping a starch source (commonly cereal grains) in water and fermenting the resulting sweet liquid with yeast. At times, the products are also sold from the brewery.
https://en.wikipedia.org/wiki/Brewery
https://en.wikipedia.org/wiki/Brewing
A building or collection of co-located buildings constructed for the purpose of undertaking scientific research.
research station
A building or collection of co-located buildings constructed for the purpose of undertaking scientific research.
MA:ma
https://en.wikipedia.org/wiki/Research_station
A warehouse is a building which is used for the storage of goods.
warehouse
A warehouse is a building which is used for the storage of goods.
https://en.wikipedia.org/wiki/Warehouse
An air filter is a device that removes some substance from air.
https://en.wikipedia.org/wiki/Air_filter
ENVO
ENVO:00003968
This is a general definition derived from the definitions for particulate, chemical, and other air filters. Subclasses should be created if needed.
air filter
An air filter is a device that removes some substance from air.
ORCID:0000-0002-4366-3088
https://en.wikipedia.org/wiki/Air_filter
A portion of soil which is found in a savanna.
savanna soil
Soil which has little to no water content and in which minerals and other soluble chemical entities have either bonded or become adsorbed to sold particles due to insufficient water availability.
dry soil
A portion of soil which is part of a cropland or a rangeland biome.
farm soil
A portion of soil which is found in a grassland.
grassland soil
Soil which is part of an agricultural field.
field soil
Soil which is part of some elevated land.
upland soil
Soil which is part of some elevated land.
Sand which is part of a desert.
desert sand
The dwelling of an animal or group of similar animals.
constructed animal dwelling
den
nest
This class represents habitations of non-human animals. This distinction may be removed in future releases.
animal habitation
The dwelling of an animal or group of similar animals.
MA:ma
A bird nest is the spot in which a bird lays and incubates its eggs and raises its young.
bird nest
bird's nest
eyrie
ENVO
ENVO:00005805
nest of bird
A bird nest is the spot in which a bird lays and incubates its eggs and raises its young.
https://en.wikipedia.org/wiki/Bird_nest
A material entity which other material entities in an environmental system are primarily or partially composed of.
portion of environmental material
Everything under this parent must be a mass noun (i.e. not countable). All subclasses are to be understood as being composed primarily of the named entity, rather than restricted to that entity. For example, "ENVO:water" is to be understood as "environmental material composed primarly of some CHEBI:water".
Instances of this class are portions of environmental materials, such as seawater in bucket, a water parcel in the photic zone of a lake, or the concrete that composes a building part. Instances of these portions may have fiat or non-fiat boundaries. For example, a water parcel has not physical boundaries, while the seawater in a bucket is bounded by the internal surfaces of the bucket.
environmental material
A material entity which other material entities in an environmental system are primarily or partially composed of.
A layer of some material entity which is adjacent to one or more of its external boundaries and directly interacts with its immediate surroundings.
EcoLexicon:surface
http://sweetontology.net/reprSpaceGeometry/Surface
https://en.wikipedia.org/wiki/Surface
This class is distinct from a geometric surface, which is two-dimensional. The idea of "uppermost" may be problematic. Further, the definition of layer (the superclass of surface in rev 133) references surface. This may be another issue. Perhaps this can be made into an inferred class using 'bounding layer of' some material entity, note that 'bounding layer' implies containment, which may not be valid here.
surface layer
A layer of some material entity which is adjacent to one or more of its external boundaries and directly interacts with its immediate surroundings.
URL:http://www.merriam-webster.com/dictionary/surface
Airborne solid particles (also called dust or particulate matter (PM)) or liquid droplets.
EcoLexicon:aerosol
SWEETRealm:Aerosol
Should connect to PATO as "quality of an aerosol"
aerosol
Airborne solid particles (also called dust or particulate matter (PM)) or liquid droplets.
https://en.wikipedia.org/wiki/Aerosol
Anthropogenic material in or on which organisms may live.
ENVO
ENVO:0010001
anthropogenic environmental material
Anthropogenic material in or on which organisms may live.
MA:ma
MERGED DEFINITION:
TARGET DEFINITION: An oceanographic feature that involves wind-driven motion of dense, cooler, and usually nutrient-rich water towards the ocean surface, replacing the warmer, usually nutrient-deplete surface water.
--------------------
SOURCE DEFINITION: A marine upwelling is a net flow of marine water to the surface of the water column from deeper regions. This is often a result of surface water displacement off continental coasts by wind action. Localised upwellings may also occur along divergent fronts around eddies and along some of the major oceanographic features. Deeper waters often have higher nutrient content; consequently blooms of primary producers, such as planktonic algae, are generally observed around upwelling zones.
ENVO:01000063
EcoLexicon:upwell
EcoLexicon:upwelling
SWEETRealm:Upwelling
https://en.wikipedia.org/wiki/Upwelling
marine upwelling
This term is specific to marine upwellings.
upwelling
MERGED DEFINITION:
TARGET DEFINITION: An oceanographic feature that involves wind-driven motion of dense, cooler, and usually nutrient-rich water towards the ocean surface, replacing the warmer, usually nutrient-deplete surface water.
--------------------
SOURCE DEFINITION: A marine upwelling is a net flow of marine water to the surface of the water column from deeper regions. This is often a result of surface water displacement off continental coasts by wind action. Localised upwellings may also occur along divergent fronts around eddies and along some of the major oceanographic features. Deeper waters often have higher nutrient content; consequently blooms of primary producers, such as planktonic algae, are generally observed around upwelling zones.
https://en.wikipedia.org/wiki/Upwelling
Particulate environmental material which is primarily composed of silt particles.
Do not oversimplify the particulate environmental material subclasses with design patterns or similar. The materials have properties that their components do not - write full definitions including these where possible.
EcoLexicon:silt
SWEETRealm:Silt
https://en.wikipedia.org/wiki/Silt
This definition is intentionally ambiguous to support the multiple thresholds set by different authorities. Some authorities consider this soil material that contains 80% or more silt and less than 12% clay. In the Udden-Wentworth scale (due to Krumbein), silt particles range between 0.0039 to 0.0625 mm, larger than clay but smaller than sand particles. ISO 14688 grades silts between 0.002 mm and 0.063 mm. In actuality, silt is chemically distinct from clay, and unlike clay, grains of silt are approximately the same size in all dimensions; furthermore, their size ranges overlap. Clays are formed from thin plate-shaped particles held together by electrostatic forces, so present a cohesion. According to the U.S. Department of Agriculture Soil Texture Classification system, the sand-silt distinction is made at the 0.05 mm particle size. The USDA system has been adopted by the Food and Agriculture Organization (FAO). In the Unified Soil Classification System (USCS) and the AASHTO Soil Classification system, the sand-silt distinction is made at the 0.075 mm particle size (i.e., material passing the #200 sieve). Silts and clays are distinguished mechanically by their plasticity.
silt
Particulate environmental material which is primarily composed of silt particles.
This definition is intentionally ambiguous to support the multiple thresholds set by different authorities. Some authorities consider this soil material that contains 80% or more silt and less than 12% clay. In the Udden-Wentworth scale (due to Krumbein), silt particles range between 0.0039 to 0.0625 mm, larger than clay but smaller than sand particles. ISO 14688 grades silts between 0.002 mm and 0.063 mm. In actuality, silt is chemically distinct from clay, and unlike clay, grains of silt are approximately the same size in all dimensions; furthermore, their size ranges overlap. Clays are formed from thin plate-shaped particles held together by electrostatic forces, so present a cohesion. According to the U.S. Department of Agriculture Soil Texture Classification system, the sand-silt distinction is made at the 0.05 mm particle size. The USDA system has been adopted by the Food and Agriculture Organization (FAO). In the Unified Soil Classification System (USCS) and the AASHTO Soil Classification system, the sand-silt distinction is made at the 0.075 mm particle size (i.e., material passing the #200 sieve). Silts and clays are distinguished mechanically by their plasticity.
Particulate environmental material which is composed primarily of particles of sand with only minor proportions of other substances.
Do not oversimplify the particulate environmental material subclasses with design patterns or similar. The materials have properties that their components do not - write full definitions including these where possible.
EcoLexicon:sand
LTER:484
SWEETRealm:Sand
https://en.wikipedia.org/wiki/Sand
This definition is intentionally ambiguous to support the multiple thresholds set by different authorities. Some authorities consider as sands soil material that contains 85% or more sand; the percentage of silt plus 1.5 times the percentage of clay does not exceed 15. coarse sand (sable grossier) 25% or more very coarse and coarse sand, and less than 50% any other one grade of sand.
sand
Particulate environmental material which is composed primarily of particles of sand with only minor proportions of other substances.
https://en.wikipedia.org/wiki/Sand
This definition is intentionally ambiguous to support the multiple thresholds set by different authorities. Some authorities consider as sands soil material that contains 85% or more sand; the percentage of silt plus 1.5 times the percentage of clay does not exceed 15. coarse sand (sable grossier) 25% or more very coarse and coarse sand, and less than 50% any other one grade of sand.
https://sis.agr.gc.ca/cansis/glossary/t/index.html
Expressions of the estuarine biome occur at wide lower courses of a rivers where they flow into a sea. Estuaries experience tidal flows and their water is a changing mixture of fresh and salt.
ORCID:0000-0002-4366-3088
2010-03-15T11:17:06Z
SPIRE:Estuarine
estuarine biome
Expressions of the estuarine biome occur at wide lower courses of a rivers where they flow into a sea. Estuaries experience tidal flows and their water is a changing mixture of fresh and salt.
ISBN:978-92-1-161386-5
ORCID:0000-0002-4366-3088
The marine salt marsh biome comprises marshes that are transitional intertidals between land and salty or brackish marine water (e.g.: sloughs, bays, estuaries). It is dominated by halophytic (salt tolerant) herbaceous plants. The daily tidal surges bring in nutrients, which tend to settle in roots of the plants within the salt marsh. The natural chemical activity of salty (or brackish) water and the tendency of algae to bloom in the shallow unshaded water also allow for great biodiversity.
ORCID:0000-0002-4366-3088
2010-03-15T11:17:06Z
ENVO
salt marsh
ENVO:01000022
marine salt marsh biome
The marine salt marsh biome comprises marshes that are transitional intertidals between land and salty or brackish marine water (e.g.: sloughs, bays, estuaries). It is dominated by halophytic (salt tolerant) herbaceous plants. The daily tidal surges bring in nutrients, which tend to settle in roots of the plants within the salt marsh. The natural chemical activity of salty (or brackish) water and the tendency of algae to bloom in the shallow unshaded water also allow for great biodiversity.
ORCID:0000-0002-4366-3088
https://en.wikipedia.org/wiki/Salt_marsh
The marginal sea biome comprises parts of an ocean partially enclosed by land such as islands, archipelagos, or peninsulas. Unlike mediterranean seas, marginal seas have ocean currents caused by ocean winds. Many marginal seas are enclosed by island arcs that were formed from the subduction of one oceanic plate beneath another.
ORCID:0000-0002-4366-3088
2010-03-15T11:23:23Z
marginal sea biome
The marginal sea biome comprises parts of an ocean partially enclosed by land such as islands, archipelagos, or peninsulas. Unlike mediterranean seas, marginal seas have ocean currents caused by ocean winds. Many marginal seas are enclosed by island arcs that were formed from the subduction of one oceanic plate beneath another.
ORCID:0000-0002-4366-3088
https://en.wikipedia.org/wiki/Marginal_sea
A marine biome which is determined by an ocean.
ORCID:0000-0002-4366-3088
2010-03-15T11:23:23Z
Ocean biomes are determined by major bodies of saline water, principal components of the hydrosphere. Approximately 71% of the Earth's surface is covered by ocean, a continuous body of water that is customarily divided into several principal oceans and smaller seas. More than half of this area is over 3,000 metres (9,800 ft) deep. Average oceanic salinity is around 35 parts per thousand (ppt) (3.5%), and nearly all seawater has a salinity in the range of 30 to 38 ppt.
ocean biome
A marine biome which is determined by an ocean.
ORCID:0000-0002-4366-3088
https://en.wikipedia.org/wiki/Ocean
An environmental material which is composed primarily of particles.
Do not oversimplify this branch with design patterns or similar. The materials have properties that their components do not - write full definitions including these where possible.
particulate matter
particulate environmental material
A portion of planktonic material is a portion of environmental material primarily composed of plankton.
See Issue #251. Awaiting class creation in PCO to attempt logical definitions.
mass of plankton
plankton
planktonic material
A water current which is maintained by a continuous, directed movement of marine water, generated by forces caused by breaking waves, wind, Coriolis force, temperature and salinity differences, and tides caused by the gravitational pull of astronomical bodies. Depth contours, shoreline configurations and interaction with other currents influence a current's direction and strength.
ORCID:0000-0002-4366-3088
2010-03-16T12:16:11Z
EcoLexicon:marine_current
marine current
A water current which is maintained by a continuous, directed movement of marine water, generated by forces caused by breaking waves, wind, Coriolis force, temperature and salinity differences, and tides caused by the gravitational pull of astronomical bodies. Depth contours, shoreline configurations and interaction with other currents influence a current's direction and strength.
ORCID:0000-0002-4366-3088
https://en.wikipedia.org/wiki/Ocean_current
Environmental material derived from living organisms and composed primarily of one or more biomacromolecules.
ORCID:0000-0002-4366-3088
2010-03-20T08:40:04Z
EcoLexicon:organic_material
biomass
organic material
Environmental material derived from living organisms and composed primarily of one or more biomacromolecules.
ISBN:978-0-618-45504-1
ORCID:0000-0002-4366-3088
A forest ecosystem which is in its climactic successional state.
2013-04-07T14:26:46Z
LTER:212
SPIRE:Forest
forest biome
A woodland ecosystem which is in its climactic successional state.
2013-04-07T14:26:46Z
woodland biome
A shrubland biome is a terrestrial biome which includes, across its entire spatial extent, dense groups of shrubs.
2013-04-07T14:26:46Z
Preliminary definition.
shrubland biome
A grassland ecosystem which is in its climactic successional state.
2013-04-07T14:26:46Z
SPIRE:Savannah_or_grassland
grassland biome
A savanna ecosystem which is in its climactic successional state.
ORCID:0000-0002-4366-3088
2013-04-07T14:26:46Z
SPIRE:Savannah_or_grassland
savanna biome
A desert ecosystem which is in its climactic successional state.
ORCID:0000-0002-4366-3088
2013-04-07T14:26:46Z
SPIRE:Desert_or_dune
desert biome
.A temperate desert ecosytem which is in its climactic successional state
ORCID:0000-0002-4366-3088
2013-04-07T14:28:08Z
temperate desert biome
.A temperate desert ecosytem which is in its climactic successional state
WWW:http://www.fs.fed.us/land/ecosysmgmt/colorimagemap/images/340.html
.A subtropical desert ecosytem which is in its climactic successional state.
ORCID:0000-0002-4366-3088
2013-04-07T14:28:08Z
subtropical desert biome
.A subtropical desert ecosytem which is in its climactic successional state.
WWW:http://www.earthonlinemedia.com/ebooks/tpe_3e/title_page.html
https://en.wikipedia.org/wiki/Subtropical#Semi-desert.2Fdesert_climate
A montane desert ecosytem which is in its climactic successional state.
ORCID:0000-0002-4366-3088
2013-04-07T14:28:08Z
Preliminary definition.
montane desert biome
.A polar desert ecosytem which is in its climactic successional state.
ORCID:0000-0002-4366-3088
2013-04-07T14:28:08Z
polar desert biome
.A polar desert ecosytem which is in its climactic successional state.
https://en.wikipedia.org/wiki/Polar_desert
A savanna biome which is subject to tropical climate patterns.
ORCID:0000-0002-4366-3088
2013-04-07T14:28:51Z
tropical savanna biome
A savanna biome which is subject to temperate climate patterns.
ORCID:0000-0002-4366-3088
2013-04-07T14:28:51Z
prairie biome
temperate savanna biome
A subtropical grassland which is in its climactic successional state.
2013-04-07T14:29:48Z
subtropical grassland biome
A tropical grassland which is in its climactic successional state.
2013-04-07T14:29:48Z
tropical grassland biome
A temperate grassland which is in its climactic successional state.
2013-04-07T14:29:48Z
prairie biome
temperate grassland biome
A montane grassland which is in its climactic successional state.
2013-04-07T14:29:48Z
Preliminary definition.
montane grassland biome
A coniferous forest biome is a forest biome which contains densely packed populations or communities of coniferous trees, strongly limiting light penetration to the forest floor.
ORCID:0000-0002-4366-3088
2013-04-07T14:31:01Z
coniferous forest biome
A broadleaf forest ecosystem which is in its climactic successional state.
2013-04-07T14:31:01Z
broadleaf forest biome
A mixed forest which is in its climactic successional state.
2013-04-07T14:31:01Z
mixed forest biome
A tropical broadleaf forest which is in its climactic successional state.
2013-04-07T14:32:28Z
tropical broadleaf forest biome
A subtropical broadleaf forest in which is in its climactic successional state.
ORCID:0000-0002-4366-3088
2013-04-07T14:32:28Z
subtropical broadleaf forest biome
A broadleaf forest which is subject to temperate climate patterns.
2013-04-07T14:32:28Z
temperate broadleaf forest biome
An environmental condition is a range of a determinate quality or combination of qualities that are present in an environmental system.
2013-04-07T14:35:18Z
A condition defines a restricted range of a given quality or combination of qualities. If an environment class, E, has_condition C, then all qualities listed in C are restricted to the ranges defined in C in E. This is not intended as a logical conditional.
environmental condition
An environmental condition is a range of a determinate quality or combination of qualities that are present in an environmental system.
DOI:10.1186/2041-1480-4-43
A tropical condition is an environmental condition in which an environmental system receives high yearly solar irradiance per unit area and, on Earth, the Sun reaches a subsolar point at least once during the solar year. This results in a hot and moist year-round climate at low elevations, which have a monthly average temperature above 18 degrees Celsius.
2013-04-07T14:36:47Z
EcoLexicon:the_tropics
SPIRE:Tropical
tropical
A tropical condition is an environmental condition in which an environmental system receives high yearly solar irradiance per unit area and, on Earth, the Sun reaches a subsolar point at least once during the solar year. This results in a hot and moist year-round climate at low elevations, which have a monthly average temperature above 18 degrees Celsius.
https://en.wikipedia.org/wiki/Tropical
A subtropical condition is an environmental condition in which an envrionmental system receives more solar irradiance than those with temperate conditions, but less than those with tropical conditions. At low elevations, this typically results in eight months of the year having average temperatures greater than or equal to 10 degrees Celsius with the coldest monthly temperature averaging between 2 and 13 degrees Celsius.
2013-04-07T14:36:47Z
As with most other climatic zones and conditions, multiple classification schemes have somehat different definitions and criteria. To quote from https://en.wikipedia.org/wiki/ "Several methods have been used to define the subtropical climate. In the Trewartha climate classification, a subtropical region should have at least eight months with a mean temperature of 10 °C (50.0 °F) or above. German climatologists Carl Troll and Karlheinz Paffen defined Warm temperate zones as plain and hilly lands having an average temperature of the coldest month between 2 °C (35.6 °F) and 13 °C (55.4 °F) in the Northern Hemisphere and between 6 °C (42.8 °F) and 13 °C (55.4 °F) in the Southern Hemisphere, excluding oceanic and continental climates. According to the Troll-Paffen climate classification, there generally exists one large subtropical zone named the warm-temperate subtropical zone,[4] which is subdivided into seven smaller areas.[5]
According to the E. Neef climate classification, the subtropical zone is divided into two parts: Rainy winters of the west sides and Eastern subtropical climate.[6] According to the Wilhelm Lauer & Peter Frankenberg climate classification, the subtropical zone is divided into three parts: high-continental, continental, and maritime.[7] According to the Siegmund/Frankenberg climate classification, subtropical is one of six climate zones in the world.[8]"
subtropical
A temperate condition is an environmental condition in which an environmental system receives less solar irradiance than those with subpolar conditions, but greater than those with subtropical conditions.
2013-04-07T14:36:47Z
SPIRE:Temperate
tepid climate
This class' definition is less satisfactory than the other latitudinal conditoins.
temperate
A temperate condition is an environmental condition in which an environmental system receives less solar irradiance than those with subpolar conditions, but greater than those with subtropical conditions.
https://en.wikipedia.org/wiki/Temperate_climate
tepid climate
https://en.wikipedia.org/wiki/Temperate_climate
A coniferous forest biome which is subject to subtropical climate patterns.
ORCID:0000-0002-4366-3088
2013-04-07T14:39:14Z
Preliminary definition. The semantics and definitions of "mediterranean", "subtropical", "tropical", "temperate", "polar", and similar climate types may be transferred to an "environmental condition" class once the semantics of this class have been established.
subtropical coniferous forest biome
A coniferous forest biome which is subject to temperate climate patterns.
ORCID:0000-0002-4366-3088
2013-04-07T14:39:14Z
Preliminary definition. The semantics and definitions of "mediterranean", "subtropical", "tropical", "temperate", "polar", and similar climate types may be transferred to an "environmental condition" class once the semantics of this class have been established.
temperate coniferous forest biome
A temperate mixed forest in which dominant ecological communities have reached their climax successional state.
ORCID:0000-0002-4366-3088
2013-04-07T14:39:30Z
temperate mixed forest biome
A shrubland biome which is subject to subtropical climate patterns.
ORCID:0000-0002-4366-3088
2013-04-07T14:40:32Z
Preliminary definition. The semantics and definitions of "mediterranean", "subtropical", "tropical", "temperate", "polar", and similar climate types may be transferred to an "environmental condition" class once the semantics of this class have been established.
subtropical shrubland biome
A shrubland biome which is subject to tropical climate patterns.
ORCID:0000-0002-4366-3088
2013-04-07T14:40:32Z
Preliminary definition. The semantics and definitions of "mediterranean", "subtropical", "tropical", "temperate", "polar", and similar climate types may be transferred to an "environmental condition" class once the semantics of this class have been established.
tropical shrubland biome
A shrubland biome which is subject to temperate climate patterns.
ORCID:0000-0002-4366-3088
2013-04-07T14:40:32Z
prairie biome
Preliminary definition. The semantics and definitions of "mediterranean", "subtropical", "tropical", "temperate", "polar", and similar climate types may be transferred to an "environmental condition" class once the semantics of this class have been established.
temperate shrubland biome
A montane shrubland biome is a shrubland biome which occurs in regions elevated above sea level and which has community structure determined by elevation-dependent environmental conditions.
ORCID:0000-0002-4366-3088
2013-04-07T14:40:32Z
Preliminary definition.
montane shrubland biome
An anthropogenic terrestrial biome is a terrestrial biome which has community structures determined by human activity.
2013-04-07T14:45:22Z
anthrome
human biome
Preliminary definition.
anthropogenic terrestrial biome
An anthropogenic terrestrial biome is a terrestrial biome which has community structures determined by human activity.
http://www.eoearth.org/view/article/150128/
A tropical woodland ecosystem which is in its climactic successional state.
2013-04-07T15:01:04Z
tropical woodland biome
A woodland biome which is subject to temperate climate patterns.
2013-04-07T15:01:04Z
temperate woodland biome
A subtropical woodland ecosystem which is in its climactic successional state.
ORCID:0000-0002-4366-3088
2013-04-07T15:01:04Z
subtropical woodland biome
A montane savanna biome is a savanna biome which occurs in regions elevated above sea level and which has community structure determined by elevation-dependent environmental conditions.
ORCID:0000-0002-4366-3088
2013-04-07T16:50:01Z
Preliminary definition.
montane savanna biome
An environmental condition in which annual precipitation is less than half of annual potential evapotranspiration.
2013-04-24T13:28:18Z
EcoLexicon:aridity
arid
A polar condition is an environmental condition in which an environmental system receives low, yearly solar irradiance per unit area, resulting in colder climatic conditions.
2013-05-08T07:49:36Z
SPIRE:Polar
SWEETRealm:Polarization
frigid
On Earth, polar conditions are such that every month has average temperature lower than 10 degrees Celsius. Note that this class refers to a climatic rather than a positional condition.
polar
A polar condition is an environmental condition in which an environmental system receives low, yearly solar irradiance per unit area, resulting in colder climatic conditions.
https://en.wikipedia.org/wiki/Polar_climate
frigid
https://en.wikipedia.org/wiki/Polar_climate
A scrubland which is located in a desert.
2013-06-06T15:02:30Z
desert scrub
desert scrubland
A scrubland which is located in a desert.
ORCID:0000-0001-8743-9574
desert scrub
ORCID:0000-0001-8743-9574
A cropland ecosystem which is in its climactic successional state.
2013-06-14T11:45:47Z
cropland biome
A cropland ecosystem which is in its climactic successional state.
A village biome is an anthropogenic terrestrial biome which contains settlements such as villages, towns, and/or small cities and which is primarily used for agricultural activity.
ORCID:0000-0002-4366-3088
2013-06-14T11:45:47Z
Villages are also described as agricultural settlements with greater than 100 persons per square kilometre; however, no upper limit is defined.
village biome
A village biome is an anthropogenic terrestrial biome which contains settlements such as villages, towns, and/or small cities and which is primarily used for agricultural activity.
DOI:10.1111/j.1466-8238.2010.00540.x
DOI:10.1890/070062
A rangeland ecosystem which has reached its climactic successional state.
2013-06-14T11:45:47Z
rangeland biome
A rangeland ecosystem which has reached its climactic successional state.
A dense settlement biome is an anthropogenic terrestrial biome which is primarily used for human habitation, recreation, and industry within built structures with little other land use.
ORCID:0000-0002-4366-3088
2013-06-14T11:45:47Z
ENVO:01000248
dense settlement biome
A dense settlement biome is an anthropogenic terrestrial biome which is primarily used for human habitation, recreation, and industry within built structures with little other land use.
DOI:10.1111/j.1466-8238.2010.00540.x
DOI:10.1890/070062
A coniferous forest biome which includes communities adapted to subpolar conditions.
2013-09-04T06:41:53Z
EcoLexicon:taiga
LTER:72
SPIRE:Taiga
boreal forest
taiga
subpolar coniferous forest biome
A subpolar condition is an environmental condition in which an environmental system receives low, yearly solar irradiance per unit area and is surrounded by large land masses. This results in very cold winters with temperatures potentially falling to around -40 degrees Celsius and summers which last no more than 3 months of the year with a 24-hour average temperature of at least 10 degrees Celsius.
2013-09-04T07:08:34Z
boreal
subarctic
Note that this class refers to a climatic rather than a positional condition.
subpolar
A subpolar condition is an environmental condition in which an environmental system receives low, yearly solar irradiance per unit area and is surrounded by large land masses. This results in very cold winters with temperatures potentially falling to around -40 degrees Celsius and summers which last no more than 3 months of the year with a 24-hour average temperature of at least 10 degrees Celsius.
https://en.wikipedia.org/wiki/Subarctic_climate
boreal
https://en.wikipedia.org/wiki/Subarctic_climate
subarctic
https://en.wikipedia.org/wiki/Subarctic_climate
A system which has the disposition to environ one or more material entities.
2013-09-23T16:04:08Z
EcoLexicon:environment
environment
In ENVO's alignment with the Basic Formal Ontology, this class is being considered as a subclass of a proposed BFO class "system". The relation "environed_by" is also under development. Roughly, a system which includes a material entity (at least partially) within its site and causally influences that entity may be considered to environ it. Following the completion of this alignment, this class' definition and the definitions of its subclasses will be revised.
environmental system
A system which has the disposition to environ one or more material entities.
DOI:10.1186/2041-1480-4-43
A mineral material is an environmental material which is primarily composed of some substance that is naturally occurring, solid and stable at room temperature, representable by a chemical formula, usually abiogenic, and that has an ordered atomic structure.
Look for "mineral" in a chemical or geochemical ontology to formalise the composed primarily of link.
From https://en.wikipedia.org/wiki/ [A mineral] is different from a rock, which can be an aggregate of minerals or non-minerals and does not have a specific chemical composition. The exact definition of a mineral is under debate, especially with respect to the requirement a valid species be abiogenic, and to a lesser extent with regards to it having an ordered atomic structure.
ORCID:0000-0002-4366-3088
2013-10-05T12:37:41Z
LTER:341
mineral material
A mineral material is an environmental material which is primarily composed of some substance that is naturally occurring, solid and stable at room temperature, representable by a chemical formula, usually abiogenic, and that has an ordered atomic structure.
https://en.wikipedia.org/wiki/Mineral
Water vapour is a vapour which is the gas phase of water.
ORCID:0000-0002-4366-3088
2013-10-10T07:58:18Z
aqueous vapor
aqueous vapour
water vapor
Perhaps a better relation between water vapour and water can be found in or added to RO?
water vapour
Water vapour is a vapour which is the gas phase of water.
https://en.wikipedia.org/wiki/Water_vapor
aqueous vapor
https://en.wikipedia.org/wiki/Water_vapor
aqueous vapour
https://en.wikipedia.org/wiki/Water_vapor
water vapor
https://en.wikipedia.org/wiki/Water_vapor
An atmosphere is a layer of gases surrounding a material body of sufficient mass that is held in place by the gravity of the body.
ORCID:0000-0002-4366-3088
2013-10-10T08:14:50Z
LTER:48
atmosphere
An atmosphere is a layer of gases surrounding a material body of sufficient mass that is held in place by the gravity of the body.
https://en.wikipedia.org/wiki/Atmosphere
https://en.wikipedia.org/wiki/Physical_geography
Atmospheric water vapour is water vapour that is part of an atmosphere.
ORCID:0000-0002-4366-3088
2013-10-10T08:22:07Z
atmospheric water vapor
ENVO
ENVO:01000268
atmospheric water vapour
Atmospheric water vapour is water vapour that is part of an atmosphere.
https://en.wikipedia.org/wiki/Water_vapor
atmospheric water vapor
https://en.wikipedia.org/wiki/Water_vapor
A large unit of land or water containing a geographically distinct assemblage of species, natural communities, and environmental conditions.
2013-10-12T17:21:09Z
Specific ecoregions are geographically defined and instantiated entities (e.g. Beringia lowland tundra), and should be represented as instances / named individuals of ENVO:ecoregion or an appropriate subclass.
ecoregion
A large unit of land or water containing a geographically distinct assemblage of species, natural communities, and environmental conditions.
DOI:10.1641/0006-3568(2001)051[0933:TEOTWA]2.0.CO;2
URL:http://worldwildlife.org/biomes
Ice which is formed from water.
2013-10-13T12:01:28Z
LTER:262
ice
Water ice can appear transparent or opaque bluish-white color, depending on the presence of impurities or air inclusions. The addition of other materials such as soil may further alter its appearance.
When speaking about ice on Earth, usually water ice is meant - the solid, crystalline form of water found in the atmosphere as snow crystals, hail, ice pellets, etc., and on the earth's surface in forms such as hoarfrost, rime, glaze, sea ice, glacier ice, ground ice, frazil, anchor ice, etc.
This form of water is, strictly speaking, called ice Ih, the Roman numeral I distinguishing it from more than a dozen other phases and the letter h distinguishing it from the metastable cubic phase ice Ic. Ice Ih is the only one of the several known phases of water ice that is stable at commonly occurring temperatures and pressures. (Some of the other forms have very unusual properties, ice VII, for example, being stable only at pressures above 22 400 kg/cm^2, but then existing at temperatures up to about 100C.)
It has an open structure with a specific gravity of 0.9166 which is slightly less than water; because the water molecules bond to their neighbors covalently only in four directions; it therefore floats on higher density water, where broken molecular bonds permit closer packing. All commonly occurring forms of ice are crystalline, although large single crystals are relatively rare except in glaciers. The ice crystal lattice possesses hexagonal symmetry that manifests itself in the gross forms of such single crystals as are sometimes found in snow. At an air pressure of one atmosphere, ice melts at 0 C by definition of the Celsius temperature scale. (Strictly speaking the equilibrium point among water, ice, and vapor occurs at +0.01C, the triple point.) On the other hand, ice does not invariably form in liquid water cooled below this temperature; it has a tendency to supercool, more so in the absence of ice nuclei.
In permafrost regions, ice may occupy voids in soils and rocks and may develop in a variety of forms. Ice may be colourless to pale blue or greenish-blue. It may appear white due to included gas bubbles; in exposures, ground ice may also appear black.
In nature ice is formed either by: (a) the freezing of water, (b) the condensation of atmospheric water vapour direct into ice crystals, (c) the compaction of snow with or without the motion of a glacier, or (d) the impregnation of porous snow masses with water which subsequently freeze.
water ice
Ice which is formed from water.
https://en.wikipedia.org/wiki/Ice
ice
http://www.eionet.europa.eu/gemet/concept/4131
Ecozones delineate large areas of a planetary surface within which organisms have been evolving in relative isolation over long periods of time, separated from one another by geographic features, such as oceans, broad deserts, or high mountain ranges, that constitute barriers to migration.
ORCID:0000-0002-4366-3088
2013-10-13T18:32:46Z
ENVO contains this top-level class, but all instances will be in GAZ. The definition is preliminary and will be aligned to BFO.
https://en.wikipedia.org/wiki/ Ecozones correspond to the floristic kingdoms of botany or zoogeographic regions of zoology. Ecozones are characterized by the evolutionary history of the organisms they contain. They are distinct from biomes, also known as major habitat types, which are divisions of the Earth's surface based on life form, or the adaptation of plants and animals to climatic, soil, and other conditions. Biomes are characterized by similar climax vegetation. Each ecozone may include a number of different biomes. A tropical moist broadleaf forest in Central America, for example, may be similar to one in New Guinea in its vegetation type and structure, climate, soils, etc., but these forests are inhabited by plants and animals with very different evolutionary histories.
ecozone
Ecozones delineate large areas of a planetary surface within which organisms have been evolving in relative isolation over long periods of time, separated from one another by geographic features, such as oceans, broad deserts, or high mountain ranges, that constitute barriers to migration.
https://en.wikipedia.org/wiki/ecozone
A material entity which 1) is spatially continuous, 2) is composed of material of comparable thickness, composition, and physical properties, and 3) is physically distinct from adjacent portions of environmental material.
2013-10-15T16:42:02Z
layer
A material entity which 1) is spatially continuous, 2) is composed of material of comparable thickness, composition, and physical properties, and 3) is physically distinct from adjacent portions of environmental material.
A layer which is part of a lake.
ORCID:0000-0002-4366-3088
2013-10-15T16:57:43Z
ENVO
ENVO:01000283
Note that this class does not contain metalimnion as a subclass. The metaliminon is classified as a thermocline.
lake layer
A mass of water ice.
Class should be populated by inference and asserted subclasses redistributed.
ORCID:0000-0002-4366-3088
2013-10-15T19:49:11Z
accumulation of ice
ice accumulation
http://sweetontology.net/phenCryo/Accumulation
ice mass
A layer that is part of a marine water body.
ORCID:0000-0002-4366-3088
marine layer
A layer that is part of a marine water body.
ORCID:0000-0002-4366-3088
An endolithic environment is an environment that exists within solid rock.
endolithic environment
An environmental system which has its properties and dynamics determined by saline water.
Water (saline)
saline water environment
Water (saline)
http://press.igsb.anl.gov/earthmicrobiome/protocols-and-standards/emp-ontology-empo/
An environment which has a lower temperature than some local or global average.
The definition of the deprecated 'cold temperature habitat' class, which this class was derived from, quotes an upper threshold of 15 degrees Celsius for 'coldness'.
cold environment
An anthropogenic environment is an environmental system which is the product of human activity.
Unsatisfactory definition here. Must consider the threshold that makes an environmental system anthropogenic.
anthropogenic environment
A high osmolarity environment is an environment in which entities are exposed to high concentrations of solutes.
high osmolarity environment
An acidic environment is an environment in which material entities are exposed to a low pH.
acidic environment
An environment whose dynamics are strongly influenced by water.
aquatic environment
A rocky slope is a slope which has a surface primarily composed of rock.
rocky slope
An enviroment system which is determined by an ocean or sea.
marine environment
An enviroment system which is determined by an ocean or sea.
NM:nm
An environmental system determined by seawater.
ocean water environment
sea water environment
The atmospheric boundary layer is the lowest layer of an atmosphere which is strongly influenced by its contact with a planetary surface with strong vertical mixing and in which physical quantities such as flow velocity, temperature, and moisture display rapid fluctuations (turbulence).
planetary boundary layer
atmospheric boundary layer
A planetary surface is a surface layer where the solid or liquid material of a planet comes into contact with an atmosphere or outer space.
a useful class: this can be used to define sub-terrestrial and sub-marine entities
planetary surface
A layer in a water mass, itself composed primarily of water.
This class will eventually be populated by inference, and its asserted subclasses removed.
aquatic layer
A dome swamp is a swamp which occurs in a depression where deeper waters at the centre of the swamp allow trees to grow taller relative to those in shallower regions of the depression. This creates a dome-like shape.
The logical def should be improved with the idea of a vegetation unit growing in a depression expressed.
dome swamp
An understory is a layer of plant life which grows below the canopy without penetrating it.
under story
undergrowth
understorey
understory
An understory is a layer of plant life which grows below the canopy without penetrating it.
https://en.wikipedia.org/wiki/Understory
A shrub layer is a layer of vegetation in a woodland or forest consisting of low, woody vegetation of frutescent form.
shrub layer
A shrub layer is a layer of vegetation in a woodland or forest consisting of low, woody vegetation of frutescent form.
http://www.treeterms.co.uk/definitions/shrub-layer
A herb and fern layer is a layer of a forest or woodland which is composed of all vascular plant life that are one metre or less in height.
fern layer
herb layer
herb stratum
herbaceous layer
herbaceous stratum
herbaceous understory
ground cover
ground vegetation
regeneration layer
This definition is inclusive of non-herbaceous plants that may be transiently present in the "herb layer". See Gilliam FS (2007) The Ecological Significance of the Herbaceous Layer in Temperate Forest Ecosystems. BioScience. 57(10):845-858. (http://dx.doi.org/10.1641/B571007) for rationale and a review of definitional and terminological variation.
herb and fern layer
A herb and fern layer is a layer of a forest or woodland which is composed of all vascular plant life that are one metre or less in height.
http://dx.doi.org/10.1641/B571007
ground layer
Refers to the ground layer of a forest or woodland where leaf litter or other plant matter accumulates
litter layer
A biome which is subject to polar climatic conditions.
This class is primarily for inference and, in general, should not be used directly by annotators. If you're an annotator, please consider using a more informative term such as 'tundra biome'.
polar biome
An altitudinal condition which inheres in a bearer by virtue of the bearer having a monthly mean temperature is less than 10 degrees Celsius and being located at altitudes above the tree line and below the snowline.
LTER:26
Requested term with preliminary def. See Issue 29 on the envo tracker.
alpine
An altitudinal condition which inheres in a bearer by virtue of the bearer having a monthly mean temperature is less than 10 degrees Celsius and being located at altitudes above the tree line and below the snowline.
https://en.wikipedia.org/wiki/Altitudinal_zonation
An altitudinal condition which inheres in a bearer by virtue of the bearer being located at an altitude between mid-altitude forests and the tree line.
LTER:350
The exact level of the tree line varies with local climate, but typically the tree line is found where mean monthly soil temperatures never exceed 10.0 degrees C and the mean annual soil temperatures are around 6.7 degrees C. In the tropics, this region is typified by montane rain forest (above 3,000 ft) while at higher latitudes coniferous forests often dominate.
montane
An altitudinal condition which inheres in a bearer by virtue of the bearer being located at an altitude between mid-altitude forests and the tree line.
https://en.wikipedia.org/wiki/Altitudinal_zonation
The exact level of the tree line varies with local climate, but typically the tree line is found where mean monthly soil temperatures never exceed 10.0 degrees C and the mean annual soil temperatures are around 6.7 degrees C. In the tropics, this region is typified by montane rain forest (above 3,000 ft) while at higher latitudes coniferous forests often dominate.
https://en.wikipedia.org/wiki/Altitudinal_zonation
An altitudinal condition is an environmental condition in which ranges of factors such as temperature, humidity, soil composition, solar irradiation, and tree density vary with ranges in altitude.
Depending on the latitude (and, to a lesser extent, other factors), the actual location of the zones where these conditions are in effect will change.
altitudinal condition
An altitudinal condition is an environmental condition in which ranges of factors such as temperature, humidity, soil composition, solar irradiation, and tree density vary with ranges in altitude.
https://en.wikipedia.org/wiki/Altitudinal_zonation
An organic material primarily composed of a portion of plant root.
Requested in Issue 115 as part of the annotation of metagenomic submissions present in the European Nucleotide Archive.
root matter
An unbroken expanse (as of ice)
ORCID:0000-0002-4366-3088
This class was created to accommodate "fields" from agricultural fields to marine mesoscale eddy fields. Thus, it has a very broad definition which makes it less than informative when annotating. Please consider using or requesting an appropriate subclass.
field
An unbroken expanse (as of ice)
http://www.merriam-webster.com/dictionary/field
A layer which is determined by a form of vegetation.
forest layer
forest stratum
woodland layer
woodland stratum
Usually found in woodlands and forests.
vegetation layer
A portion of acidic water is a portion of water with a pH less than 7.
acidic water
An evergreen needleleaf forest which is subject to temperate environmental conditions.
coniferous forest
This class is one of the forest types as identified by the updated Global Forest Map (GFM 2000).
temperate evergreen needleleaf forest
A deciduous broadleaf forest which is subject to temperate climate patterns.
This class is one of the forest types as identified by the updated Global Forest Map (GFM 2000).
temperate deciduous broadleaf forest
A deciduous needleleaf forest which is subject to temperate environmental conditions.
coniferous forest
This class is one of the forest types as identified by the updated Global Forest Map (GFM 2000).
temperate deciduous needleleaf forest
A temperate mixed forest which has communities of trees composed primarily of species with broad leaves.
This class corresponds to the "Temperate Mixed broadleaf / needleleaf forest" category of the updated Global Forest Map classification (GFM 2000). To reconstruct the original class, an aggregate class with this and the "temperate mixed needleleaf forest" class can be made.
temperate mixed broadleaf forest
A temperate mixed forest which has communities of trees composed primarily of species with needle-like leaves (e.g. conifers).
coniferous forest
This class corresponds to the "Temperate Mixed broadleaf / needleleaf forest" category of the updated Global Forest Map classification (GFM 2000). To reconstruct the original class, an aggregate class with this and the "temperate mixed broadleaf forest" class can be made.
temperate mixed needleleaf forest
A sclerophyllous forest which is subject to temperate climate patterns.
This class is one of the forest types as identified by the updated Global Forest Map (GFM 2000).
temperate sclerophyllous dry forest
A broadleaf evergreen forest which is subject to temperate climate patterns.
This class is one of the forest types as identified by the updated Global Forest Map (GFM 2000).
temperate broadleaf evergreen forest
A freshwater swamp forest which is subject to temperate climate patterns.
This class is one of the forest types as identified by the updated Global Forest Map (GFM 2000). It is currently unclear how to relate forests and swamps.
temperate freshwater swamp forest
Snow is an environmental material which is primarily composed of flakes of crystalline water ice.
snow
Snow is an environmental material which is primarily composed of flakes of crystalline water ice.
http://www.eionet.europa.eu/gemet/concept/7769
https://en.wikipedia.org/wiki/Snow
A site which has its extent determined by the presence or influence of one or more components of an environmental system or the processes occurring therein.
environmental area
Formerly, this class was an experimental class and a subclass of "environmental feature". It is now aligned to BFO. The class was not obsoleted as the core semantics maintained their stability through its transition.
environmental zone
A whole plant which is relatively old
old plant
A whole plant which is relatively young.
young plant
A house is a building that provides a dwelling-place for a living entity.
The provisioning of a dwelling-place can perhaps be modelled as a role.
house
A house is a building that provides a dwelling-place for a living entity.
https://en.wikipedia.org/wiki/Home
https://en.wikipedia.org/wiki/House
A human house is a house which provides a dwelling-place for humans.
human house
A building part is a construction which is part of a building.
Not recommended for annotation. This class is likely to be made into an inferred class as its subclasses are distributed among more meaningful superclasses (i.e. ceiling is_a surface layer). See for example, "building floor". The boundaries between building parts may be bona fide or fiat.
building part
A building part which is separated from other building parts by one or more interior walls and, optionally, outdoor areas by one or more exterior walls.
ORCID:0000-0002-4366-3088
room
A building part which is separated from other building parts by one or more interior walls and, optionally, outdoor areas by one or more exterior walls.
https://en.wikipedia.org/wiki/Room
A forest biome which contains densely packed populations or communities of broadleaf trees, strongly limiting light penetration to the forest floor.
A class created to group GFM 2000 terms by the dominant vegetation type. Definitions pending.
broadleaf forest
A forest ecosystem which contains densely packed populations or communities of broadleaf and coniferous trees, strongly limiting light penetration to the forest floor.
The subclasses of this class need to be checked: are they properly placed under other classes or is this corrected and the dominant form of mixed vegetation noted in the label?
A class created to group GFM 2000 terms by the dominant vegetation type.
mixed forest
A class created to group GFM 2000 terms by the dominant vegetation type. Definitions pending.
swamp forest
coniferous forest
A class created to group GFM 2000 terms by the dominant vegetation type. Definitions pending.
needleleaf forest
A forest ecosystem which is dominated by trees adapted to dry or arid environmental conditions.
A class created to group GFM 2000 terms by the dominant vegetation type. Definitions pending.
sclerophyllous forest
A forest which is subject to montane or alpine environmental conditions.
A class created to group GFM 2000 terms by the dominant vegetation type.
high-elevation forest
A concrete masonry unit is a large, rectangular masonry unit primarily composed of concrete.
ORCID:0000-0002-4366-3088
concrete masonry unit
A concrete masonry unit is a large, rectangular masonry unit primarily composed of concrete.
https://en.wikipedia.org/wiki/Concrete_masonry_unit
A masonry unit is a solid piece of material, usually with a regular shape, used as a component in the construction of buildings. Masonry units are usually composed of brick, stone, marble, granite, travertine, limestone, cast stone, concrete block, glass block, stucco, tile, or cob.
ORCID:0000-0002-4366-3088
masonry unit
A masonry unit is a solid piece of material, usually with a regular shape, used as a component in the construction of buildings. Masonry units are usually composed of brick, stone, marble, granite, travertine, limestone, cast stone, concrete block, glass block, stucco, tile, or cob.
https://en.wikipedia.org/wiki/Masonry
Concrete is a composite material composed of an aggregate bonded together with a fluid cement which hardens over time.
ORCID:0000-0002-4366-3088
Missing the class for "aggregate" - tricky to define what it is, exactly. Again, seems more like some sort of material/disposition hybrid.
concrete
Concrete is a composite material composed of an aggregate bonded together with a fluid cement which hardens over time.
https://en.wikipedia.org/wiki/Concrete
Masonry cement is a substance used in construction that has the disposition to set and harden and thus may be used to bind materials together.
ORCID:0000-0002-4366-3088
cement
"Cement" refers more to a disposition than a specific material.
masonry cement
Masonry cement is a substance used in construction that has the disposition to set and harden and thus may be used to bind materials together.
https://en.wikipedia.org/wiki/Cement
Building walls are bulding parts which serve to support roofs, floors and ceilings; enclose a space as part of the building envelope; give buildings form; and to provide shelter and security.
This is a building part and not the same as a standalone wall, which is a building in its own right.
building wall
Building walls are bulding parts which serve to support roofs, floors and ceilings; enclose a space as part of the building envelope; give buildings form; and to provide shelter and security.
https://en.wikipedia.org/wiki/Wall
An exterior wall is a building wall which separates the interior of a building from the buildings surrounding environment.
ORCID:0000-0002-4366-3088
exterior wall
A building envelope is a building part composed of those building parts which physically separate the interior of a building from its surrounding environment.
The building envelope provides resistance to air, water, heat, light, and noise transfer. The three basic elements of a building envelope are a weather barrier, air barrier, and thermal barrier.
ORCID:0000-0002-4366-3088
building enclosure
building envelope
A building envelope is a building part composed of those building parts which physically separate the interior of a building from its surrounding environment.
The building envelope provides resistance to air, water, heat, light, and noise transfer. The three basic elements of a building envelope are a weather barrier, air barrier, and thermal barrier.
https://en.wikipedia.org/wiki/Building_envelope
ORCID:0000-0002-4366-3088
A ceiling is an overhead interior surface that covers the upper limit of a room. It is not generally considered a structural element, but a finished surface concealing the underside of the floor or roof structure above.
ceiling
A ceiling is an overhead interior surface that covers the upper limit of a room. It is not generally considered a structural element, but a finished surface concealing the underside of the floor or roof structure above.
https://en.wikipedia.org/wiki/Ceiling
A roof is the covering on the uppermost part of a building which provides protection from animals and weather, notably rain, but also heat, wind and sunlight. A roof is also the framing or structure which supports the covering
ORCID:0000-0002-4366-3088
roof
This class is meant to represent roofs which are parts of buildings, rather than a roofs of cave and other natural formations.
building roof
A roof is the covering on the uppermost part of a building which provides protection from animals and weather, notably rain, but also heat, wind and sunlight. A roof is also the framing or structure which supports the covering
https://en.wikipedia.org/wiki/Roof
A portion of brick material is a material derived from a brick which is composed of kneaded clay-bearing soil, expanded clay aggregate, sand and lime, or concrete that has been fire-hardened or air-dried.
ORCID:0000-0002-4366-3088
brick material
A portion of brick material is a material derived from a brick which is composed of kneaded clay-bearing soil, expanded clay aggregate, sand and lime, or concrete that has been fire-hardened or air-dried.
https://en.wikipedia.org/wiki/Brick
A brick is a masonry unit which is composed of kneaded clay-bearing soil, expanded clay aggregate, sand and lime, or concrete material, fire-hardened or air-dried.
ORCID:0000-0002-4366-3088
Generally used to refer to the masonry unit rather than a material.
brick
A brick is a masonry unit which is composed of kneaded clay-bearing soil, expanded clay aggregate, sand and lime, or concrete material, fire-hardened or air-dried.
https://en.wikipedia.org/wiki/Brick
A brick exterior wall is an exterior wall that is built from bricks.
ORCID:0000-0002-4366-3088
brick wall
brick exterior wall
A concrete exterior wall is an exterior wall that is composed primarily of concrete.
ORCID:0000-0002-4366-3088
concrete wall
concrete exterior wall
An iron sheet is a mass of iron which has been forged into a roughly planar form of less than 6 millimetres in thickness.
ORCID:0000-0002-4366-3088
iron sheet
An iron sheet is a mass of iron which has been forged into a roughly planar form of less than 6 millimetres in thickness.
https://en.wikipedia.org/wiki/Sheet_metal
A sheet-iron building roof is a building roof that is built from sheets of iron.
ORCID:0000-0002-4366-3088
sheet iron roof
sheet-iron roof
iron sheet building roof
sheet-iron building roof
An asbestos building roof is a building roof that is built from asbestos.
ORCID:0000-0002-4366-3088
asbestos roof
asbestos exists in CHEBI and will be imported to complete this class' logical def.
asbestos building roof
A tile is a manufactured piece of hard-wearing material such as ceramic, stone, metal, or even glass, generally used for covering roofs, floors, walls, showers, or other objects such as tabletops. Alternatively, tile can sometimes refer to similar units made from lightweight materials such as perlite, wood, and mineral wool, typically used for wall and ceiling applications.
ORCID:0000-0002-4366-3088
tile
A tile is a manufactured piece of hard-wearing material such as ceramic, stone, metal, or even glass, generally used for covering roofs, floors, walls, showers, or other objects such as tabletops. Alternatively, tile can sometimes refer to similar units made from lightweight materials such as perlite, wood, and mineral wool, typically used for wall and ceiling applications.
https://en.wikipedia.org/wiki/Tile
A tile building roof is a building roof that is built using tiles.
ORCID:0000-0002-4366-3088
tile roof
tiled roof
tile building roof
tiled building roof
A fixture which is used primarily for the collection and, in some cases, disposal of human urine and feces.
ORCID:0000-0002-4366-3088
toilet
"disposal" may not be the most precise way to describe fill-in latrines. Note that no assertion is made on whether these fixtures are in- or outdoors.
toilet fixture
A fixture which is used primarily for the collection and, in some cases, disposal of human urine and feces.
https://en.wikipedia.org/wiki/Toilet
A factory (previously manufactory) or manufacturing plant is an industrial site, usually consisting of buildings and machinery, or more commonly a complex having several buildings, where workers manufacture goods or operate machines processing one product into another.
ORCID:0000-0002-4366-3088
manufactory
manufacturing plant
factory
A factory (previously manufactory) or manufacturing plant is an industrial site, usually consisting of buildings and machinery, or more commonly a complex having several buildings, where workers manufacture goods or operate machines processing one product into another.
https://en.wikipedia.org/wiki/Factory
The layer of the atmosphere which is sandwiched between the troposphere and mesosphere. Of the energy that reaches the Earth from the sun, only 3% is absorbed in the stratosphere, but that includes the vitally important process of absorption of ultraviolet radiation by the stratospheric ozone layer. The stratosphere is cloudless and dust free, and almost unaffected by the turbulent conditions of the underlying level of the atmosphere. (Source: WRIGHT)
ORCID:0000-0002-4366-3088
Definition from GEMET - will be refined.
stratosphere
The layer of the atmosphere which is sandwiched between the troposphere and mesosphere. Of the energy that reaches the Earth from the sun, only 3% is absorbed in the stratosphere, but that includes the vitally important process of absorption of ultraviolet radiation by the stratospheric ozone layer. The stratosphere is cloudless and dust free, and almost unaffected by the turbulent conditions of the underlying level of the atmosphere. (Source: WRIGHT)
GEMET:http://www.eionet.europa.eu/gemet/concept/8128
The mesosphere is part of the earth's atmosphere which is between the stratosphere and the thermosphere in which temperature decreases with altitude to the atmosphere's absolute minimum
ORCID:0000-0002-4366-3088
mesosphere
The mesosphere is part of the earth's atmosphere which is between the stratosphere and the thermosphere in which temperature decreases with altitude to the atmosphere's absolute minimum
http://www.merriam-webster.com/dictionary/mesosphere
The lowest of the concentric layers of the atmosphere, occurring between the Earth's surface and the tropopause. It is the zone where atmospheric turbulence is at its greatest and where the bulk of the Earth's weather is generated. It contains almost all the water vapour and aerosols and three-quarters of the total gaseous mass of the atmosphere. Throughout the troposphere temperature decreases with height at a mean rate of 6.5°C/km and the whole zone is capped by either an inversion of temperature or an isothermal layer at the tropopause. (Source: WHIT)
ORCID:0000-0002-4366-3088
Definition from GEMET - will be refined.
troposphere
The lowest of the concentric layers of the atmosphere, occurring between the Earth's surface and the tropopause. It is the zone where atmospheric turbulence is at its greatest and where the bulk of the Earth's weather is generated. It contains almost all the water vapour and aerosols and three-quarters of the total gaseous mass of the atmosphere. Throughout the troposphere temperature decreases with height at a mean rate of 6.5°C/km and the whole zone is capped by either an inversion of temperature or an isothermal layer at the tropopause. (Source: WHIT)
GEMET:http://www.eionet.europa.eu/gemet/concept/8695
The thermosphere is a part of the earth's atmosphere that begins at about 50 miles (80 kilometers) above the earth's surface, extends to outer space, and is characterized by steadily increasing temperature with height
thermosphere
The thermosphere is a part of the earth's atmosphere that begins at about 50 miles (80 kilometers) above the earth's surface, extends to outer space, and is characterized by steadily increasing temperature with height
http://www.merriam-webster.com/dictionary/thermosphere
A layer that is part of the atmosphere.
ORCID:0000-0002-4366-3088
atmospheric layering
This could be made into an inferred class, rather than having asserted subclasses.
atmospheric layer
atmospheric layering
GEMET:http://www.eionet.europa.eu/gemet/concept/627
A boundary layer is a layer of fluid in the immediate vicinity of a bounding surface where the effects of viscosity are significant enough to distort the surrounding non-viscous flow.
ORCID:0000-0002-4366-3088
boundary layer
boundary layer
A boundary layer is a layer of fluid in the immediate vicinity of a bounding surface where the effects of viscosity are significant enough to distort the surrounding non-viscous flow.
https://en.wikipedia.org/wiki/Boundary_layer
boundary layer
http://www.eionet.europa.eu/gemet/concept/976
A motor vehicle is a vehicle which is propelled by an engine or motor and that does not operate on rails.
Subclasses will be added by inference.
motor vehicle
A motor vehicle is a vehicle which is propelled by an engine or motor and that does not operate on rails.
https://en.wikipedia.org/wiki/Motor_vehicle
A vehicle is a mobile machine which transports people or cargo.
vehicle
A vehicle is a mobile machine which transports people or cargo.
https://en.wikipedia.org/wiki/Vehicle
A motor is a machine designed to convert one or more forms of energy into mechanical energy.
engine
motor
A motor is a machine designed to convert one or more forms of energy into mechanical energy.
https://en.wikipedia.org/wiki/Motor
A lentic water body is a water body in which the accumulated water, in its totality, has very little to no directed flow.
lentic water body
Hydrological condensation is a process in which atmospheric water vapour undergoes a phase transition from the gas phase to the liquid phase.
condensation
"process" is included in the label to make it clear that we are not referring to the condensed material (e.g. water droplets, window fog)
hydrological condensation process
Hydrological condensation is a process in which atmospheric water vapour undergoes a phase transition from the gas phase to the liquid phase.
https://en.wikipedia.org/wiki/Condensation
Leaf litter is dead plant material, such as leaves, bark, needles, and twigs, that has fallen to the ground.
duff
leaf litter
litterfall
soil litter
tree litter
plant litter
Leaf litter is dead plant material, such as leaves, bark, needles, and twigs, that has fallen to the ground.
https://en.wikipedia.org/wiki/Plant_litter
A landmass which is part of a planet.
land
ground
planetary landmass
A landmass which is part of a planet.
Adpated from https://en.wikipedia.org/wiki/Planetary_surface
Outer space is a hard vacuum containing a low density of particles, predominantly a plasma of hydrogen and helium as well as electromagnetic radiation, magnetic fields, neutrinos, dust and cosmic rays that exists between celestial bodies.
space
outer space
Outer space is a hard vacuum containing a low density of particles, predominantly a plasma of hydrogen and helium as well as electromagnetic radiation, magnetic fields, neutrinos, dust and cosmic rays that exists between celestial bodies.
https://en.wikipedia.org/wiki/Outer_space
A planetary crust is the outermost solid shell of a rocky planet or natural satellite, which is chemically distinct from the underlying mantle.
crust
This class is meant to be applicable accross planets. Earth's crust would be an instance.
planetary crust
A planetary crust is the outermost solid shell of a rocky planet or natural satellite, which is chemically distinct from the underlying mantle.
https://en.wikipedia.org/wiki/Crust_(geology)
A planetary structural layer is laminar part of a terrestrial planet or other rocky body large enough to have differentiation by density. Planetary layers have differing physicochemical properties and composition.
Label should be improved to match definition.
planetary structural layer
A planetary mantle is a planetary layer which is an interior part of a terrestrial planet or other rocky body large enough to have differentiation by density.
mantle
This class is meant to be applicable accross planets. Earth's mantle would be an instance.
planetary mantle
A planetary mantle is a planetary layer which is an interior part of a terrestrial planet or other rocky body large enough to have differentiation by density.
https://en.wikipedia.org/wiki/Mantle_(geology)
A lithosphere is the outermost shell of a terrestrial-type planet or natural satellite that is defined by its rigid mechanical properties.
Earth's lithosphere includes the crust and uppermost mantle.
lithosphere
A lithosphere is the outermost shell of a terrestrial-type planet or natural satellite that is defined by its rigid mechanical properties.
https://en.wikipedia.org/wiki/Lithosphere
A settlement with a high density of buildings and inhabitants.
See also: http://www.ecotope.org/anthromes/v1/guide/urban/12_dense_settlements/default.aspx
The thresholds for what makes a settlment "dense" can be determined as needed. If there is a specific threshold that should be added to ENVO, please make a new class request.
dense settlement
A role that is realized in some process wherein the bearer is discarded or not utilized further.
This definition is preliminary.
waste role
A geological fracture is any separation in a geologic formation, such as a joint or a fault that divides a mass of rock into two or more pieces.
fracture
SWEETRealm:Fissure
fissure
geological fracture
A geological fracture is any separation in a geologic formation, such as a joint or a fault that divides a mass of rock into two or more pieces.
https://en.wikipedia.org/wiki/Fracture_(geology)
fissure
Genomes:fissure
A geological fault is a planar fracture or discontinuity in a volume of rock, across which there has been significant displacement as a result of rock mass movement.
fault
The relationship between faults and active plate boundaries must be further developed, as there is some overlap.
geological fault
An active fault is a fault that is likely to become the source of another earthquake sometime in the future. Geologists commonly consider faults to be active if there has been movement observed or evidence of seismic activity during the last 10,000 years.
active fault
active geological fault
Contaminated air is air which has sufficient concentrations of environmental pollutants such that it may adversely affect a given ecosystem.
contaminated air
An earthquake is a process during which energy is released in an astronomical body's crust, causing the displacement of crustal parts and the generation of seismic waves.
quake
temblor
tremor
Elastic strain, gravity, chemical reactions, or even the motion of massive bodies can produce earthquakes.
earthquake
An earthquake is a process during which energy is released in an astronomical body's crust, causing the displacement of crustal parts and the generation of seismic waves.
Adapted from URL:http://www.britannica.com/science/earthquake-geology
https://en.wikipedia.org/wiki/Earthquake
An earthquake caused by the sudden release of energy accumulated in an astronomical body's crust, as the elastic strain placed on constituent rock masses causes them to fracture.
tectonic earthquake
An earthquake caused by the sudden release of energy accumulated in an astronomical body's crust, as the elastic strain placed on constituent rock masses causes them to fracture.
URL:http://www.britannica.com/science/earthquake-geology
A lake which has concentrations of environmental contaminants high enough to harm the ecosystems associated with it.
polluted lake
A mass of water.
water mass
A coast is the area where land meets the sea, ocean, or lake.
Used for both marine and lake coasts. The boundary of the coast is fuzzy and it overlaps both the water body and land in quesiton. Compared to 'shore'
coast
A coast is the area where land meets the sea, ocean, or lake.
https://en.wikipedia.org/wiki/Coast
A tsunami is a process during which a series of waves is generated in a water body, typically an ocean or large lake, by the displacement of a large volume of water. Earthquakes, volcanic eruptions and other underwater explosions (including detonations of underwater nuclear devices), landslides, glacier calvings, meteorite impacts and other disturbances above or below water all have the potential to generate a tsunami.
seismic sea wave
tidal wave
tsunami
A tsunami is a process during which a series of waves is generated in a water body, typically an ocean or large lake, by the displacement of a large volume of water. Earthquakes, volcanic eruptions and other underwater explosions (including detonations of underwater nuclear devices), landslides, glacier calvings, meteorite impacts and other disturbances above or below water all have the potential to generate a tsunami.
https://en.wikipedia.org/wiki/Tsunami
A material transport process during which a geological surface shifts downward relative to a datum such as sea-level.
subsidence
geological subsidence
A material transport process during which a geological surface shifts downward relative to a datum such as sea-level.
https://en.wikipedia.org/wiki/Subsidence
Hydrological precipitation is a process during which any product of the condensation of atmospheric water vapour is pulled to the planetary surface by gravity.
precipitation
"process" is included in the label to make it clear that we are not referring to the precipitated material (e.g. snow, rain, sleet)
hydrological precipitation process
Hydrological precipitation is a process during which any product of the condensation of atmospheric water vapour is pulled to the planetary surface by gravity.
https://en.wikipedia.org/wiki/Precipitation
Condensation is a process during which a gas undergoes a phase transition into a liquid.
condensation process
Condensation is a process during which a gas undergoes a phase transition into a liquid.
https://en.wikipedia.org/wiki/Condensation
Desublimation is a process in which a portion of some gas undergoes a phase transition into a portion of some solid.
deposition
desublimation process
Desublimation is a process in which a portion of some gas undergoes a phase transition into a portion of some solid.
https://en.wikipedia.org/wiki/Deposition_(phase_transition)
An environmental system which can sustain and allow the growth of an ecological population.
EcoLexicon:habitat
LTER:238
SWEETRealm:Habitat
A habitat's specificity to an ecological population differentiates it from other environment classes. See Buttigieg et al. (2016; https://doi.org/10.1186/s13326-016-0097-6) for an explanation of ENVO's treatement of habitats. 3,849 of such habitat classes are available here: https://github.com/EnvironmentOntology/envo-habitats
habitat
A process in which natural ecosystems present over an expanse of land are removed and replaced with anthropogenic ecosystems.
An SDGIO request. Likely to be refined and revised. This looks like an aggregate class, subsuming a range of processes which can lead to degradation.
These anthropogenic ecosystems may include urban or other built-up settlements or anthropogenic ecosystems used for activities such as forestry or agriculture.
land consumption process
A process in which natural ecosystems present over an expanse of land are removed and replaced with anthropogenic ecosystems.
Adapted from EEA (1997) The concept of environmental space, Copenhagen, URL: http://www.eea.europa.eu/publications/92-9167-078-2/at_download/file
A self-contained constructed feature used by one or more households as a home, such as a house, apartment, mobile home, houseboat or other 'substantial' structure. A dwelling typically includes nearby outbuildings, sheds etc. within the curtilage of the property, excluding any 'open fields beyond'. It has significance in relation to search and seizure, conveyancing of real property, burglary, trespass, and land use planning.
See https://github.com/EnvironmentOntology/envo/issues/264 for discussion. This definition needs a lot of clean up and links to household and related classes must be made to form logical definitions for inference to work.
Subclasses will be added by inference.
human dwelling
A self-contained constructed feature used by one or more households as a home, such as a house, apartment, mobile home, houseboat or other 'substantial' structure. A dwelling typically includes nearby outbuildings, sheds etc. within the curtilage of the property, excluding any 'open fields beyond'. It has significance in relation to search and seizure, conveyancing of real property, burglary, trespass, and land use planning.
https://en.wikipedia.org/wiki/Dwelling accessed 11/25/2015
An area of a planet's surface which is primarily composed of bedrock, desert pavement, scarp rock, talus, material exposed by slides, volcanic material, glacial debris, sand, material exposed during strip mining, gravel, and other accumulations of earthen material in contact with an atmospheric column extending from the planetary boundary layer to the planet's exosphere with little to no physical obstruction.
The range of entities that are considered "barren land" are not exhaustive, making axiomatisation risky at this stage.
Barren Land (Rock/Sand/Clay)
NLCD:31
According to the NLCD 2011, areas of barren land generally have less than 15% cover of vegetation. A specific threshold is not asserted in this definition.
area of barren land
An area of a planet's surface which is primarily composed of bedrock, desert pavement, scarp rock, talus, material exposed by slides, volcanic material, glacial debris, sand, material exposed during strip mining, gravel, and other accumulations of earthen material in contact with an atmospheric column extending from the planetary boundary layer to the planet's exosphere with little to no physical obstruction.
https://en.wikipedia.org/wiki/Exosphere
https://en.wikipedia.org/wiki/Planetary_surface
https://www.mrlc.gov/nlcd11_leg.php
A part of an astronomical body which is primarily composed of a continuous volume of gaseous or aerosolised material held in shape by one or more environmental processes.
This may not need to be in the atmosphere, also note that "meteor" will do much of the same work.
Similar, in spirit, to landform. This class may need to be split into aerosols and 'pure' volumes of gas.
aeroform
A village is a clustered human settlement or community, larger than a hamlet but smaller than a town, with a population ranging from a few hundred to a few thousand. Though often located in rural areas, the term urban village is also applied to certain urban neighbourhoods. Villages are normally permanent, with fixed dwellings; however, transient villages can occur. Further, the dwellings of a village are fairly close to one another, not scattered broadly over the landscape, as a dispersed settlement.
This class may be split. "urban village" doesn't sit well and prevents relations to village biomes.
village
A village is a clustered human settlement or community, larger than a hamlet but smaller than a town, with a population ranging from a few hundred to a few thousand. Though often located in rural areas, the term urban village is also applied to certain urban neighbourhoods. Villages are normally permanent, with fixed dwellings; however, transient villages can occur. Further, the dwellings of a village are fairly close to one another, not scattered broadly over the landscape, as a dispersed settlement.
https://en.wikipedia.org/wiki/Village
The system of public works in a country, state or region, including roads, utility lines and public buildings.
infrastructure
We label this as 'public infrastructure', as the OECD definition refers specifically to public constructed features. The parts of public infrastructure are not exhaustive and should be extended as needed.
public infrastructure
The system of public works in a country, state or region, including roads, utility lines and public buildings.
https://stats.oecd.org/glossary/detail.asp?ID=4511
A building which is publically accessible.
Created for SDGIO, we treat "public" as "publically accessible" where the semantics of access are dealt with in SDGIO.
public building
A planned process during which a portion of environmental material is removed from a material entity.
Created for SDGIO and intended to be a more general form of resource extraction process.
material extraction process
A process whereby a large volume of gas moves due to a disequilibrium of physical forces.
wind
This class refers to all forms of "wind": from the familiar movement of air in the Earth's atmosphere to the solar wind. Use a subclass to be more precise.
mass gaseous flow
A process whereby a large volume of gas moves due to a disequilibrium of physical forces.
https://en.wikipedia.org/wiki/Wind
wind
A mass gaseous flow which occurrs in a planet's atmosphere due to internal pressure disequilibria.
atmospheric wind
A mass gaseous flow which occurrs in a planet's atmosphere due to internal pressure disequilibria.
https://en.wikipedia.org/wiki/Wind
A material entity which is composed of one or more chemical entities and has neither independent shape nor volume but tends to expand indefinitely.
This class is to be populated by inference.
gas
gaseous environmental material
A material entity which is composed of one or more chemical entities and has neither independent shape nor volume but tends to expand indefinitely.
http://www.merriam-webster.com/dictionary/gas
A material entity which is composed of a volume of unbound positive and negative particles in roughly equal numbers, conducts electricity, and possesses internal magnetic fields.
An NTR for `quality of a plasma` has been posted on the PATO tracker: https://github.com/pato-ontology/pato/issues/88
plasma
A material entity which is composed of a volume of unbound positive and negative particles in roughly equal numbers, conducts electricity, and possesses internal magnetic fields.
http://www.merriam-webster.com/dictionary/plasma
https://en.wikipedia.org/wiki/Plasma_%28physics%29
An object which is naturally occuring, bound together by gravitational or electromagnetic forces, and surrounded by space.
celestial body
Astronomical bodies are usually cohesive, thus the use of the term 'object' sensu BFO 'object'.
astronomical body
An object which is naturally occuring, bound together by gravitational or electromagnetic forces, and surrounded by space.
https://en.wikipedia.org/wiki/Astronomical_object
A planet is an astronomical body orbiting a star or stellar remnant that is massive enough to be rounded by its own gravity, is not massive enough to cause thermonuclear fusion, and has cleared its neighbouring region of planetesimals.
Considerable debate on the definition of planet exists.
planet
A planet is an astronomical body orbiting a star or stellar remnant that is massive enough to be rounded by its own gravity, is not massive enough to cause thermonuclear fusion, and has cleared its neighbouring region of planetesimals.
http://solarsystem.nasa.gov/planets/whatisaplanet
https://en.wikipedia.org/wiki/Planet
An astronomical object which is composed primarily of luminous plasma held in a spherical form by gravitational forces.
Add qualities such as spherical. Request NTRs if not available in PATO.
star
An astronomical object which is composed primarily of luminous plasma held in a spherical form by gravitational forces.
https://en.wikipedia.org/wiki/Star
An object which is composed of one or more gravitationally bound structures that are associated with a position in space.
celestial object
If there is only one astronomical body involved, this class is equivalent to ENVO:01000799. This may be problematic with reasoning, but it seems to be true to the rather fuzzy definitions found thus far.
astronomical object
An object which is composed of one or more gravitationally bound structures that are associated with a position in space.
https://en.wikipedia.org/wiki/Astronomical_object
A material part of an astronomical body.
Also note that some astronomical body parts (ABPs) may have fiat boundaries: if there's strong debate about where an ABP begins or ends (over and above fuzzy boundaries), with different official classifications setting different thresholds or limits, axiomatise the class with fiat boundaries of the appropriate dimension.
Note that material entities may have immaterial entities (e.g. sites) as parts.
This class includes material parts of astronomical bodies. Immaterial parts, such as magnetospheres, are represented as sites under the influence of magnetic fields.Please post countercases in the ENVO tracker for revision of this hierarchy if needed.
Material parts of astronomical bodies generally have boundaries formed by discontinuities in qualities, composition, or other physical characterisitcs. These boundaries are sometimes sharp, and sometimes diffuse, with different classification systems and communities declaring varying thresholds (e.g. for where a shoreline, forest, or other entity begins and ends). However, some boundaries are declared by fiat - that is, by arbitrary human convention or decree - particularly by regulatory or other authorities and communities of practice. The classes in this hierarchy attempt to offer generalisable definitions that allow multiple classfiication systems to map to and interoperate through. If desired, we can create classes that declare thresholds used by a given authority or community under the more generic ones, annotated with source information.
astronomical body part
An environmental material which is in a solid state.
This is a defined class: its subclasses will not be asserted, but filled by inference.
solid environmental material
An environmental material which is in a liquid state.
This is a defined class: most of its subclasses will not be asserted, but filled by inference.
liquid environmental material
An astronomical body part which includes all the living entities within the gravitational sphere of influence of that body, as well as the non-living and dead entities with which they interact.
Whether this class should be grouped with classes such as "hydrosphere" and "cryosphere" requires some discussion.
The gravitational sphere of influence referenced in this class' definition is the Hill sphere: a region in which an object dominates the attraction of satellites despite gravitational perturbations.
biosphere
An astronomical body part which includes all the living entities within the gravitational sphere of influence of that body, as well as the non-living and dead entities with which they interact.
http://www.biology-online.org/dictionary/Biosphere
https://en.wikipedia.org/wiki/Biosphere
An astronomical body part which is composed of the combined mass of water found on, under, and over the surface of a planet.
This is a very broad and, in practice, poorly defined term. Please consider using or requesting a more specific class.
hydrosphere
An astronomical body part which is composed of the combined mass of water found on, under, and over the surface of a planet.
https://en.wikipedia.org/wiki/Hydrosphere
An astronomical body part which is composed of soil, subject to soil formation processes, and found on the surface of a lithosphere.
This is a very broad and, in practice, poorly defined term. Please consider using or requesting a more specific class.
pedosphere
An astronomical body part which is composed of soil, subject to soil formation processes, and found on the surface of a lithosphere.
https://en.wikipedia.org/wiki/Pedosphere
Air which has increased levels of water vapour.
humid air
Air which has a partial pressure of water vapour equal or near equal to its equilibrium vapor pressure at a given temperature.
water-vapour-saturated air
wet air
"Near equal" is meant to reflect that there will be fluctuations around the equilibrium point.
water vapour saturated air
A hydrological precipitation process in which atmospheric water vapour condenses to form droplets of liquid water massive enough to fall to a planetary surface due to the planet's gravity.
rain fall
rainfall
rain
This is the process which typically happens on Earth. Other planets may have different liquids involved in the process.
water-based rainfall
A hydrological precipitation process in which atmospheric water vapour condenses to form droplets of liquid water massive enough to fall to a planetary surface due to the planet's gravity.
https://en.wikipedia.org/wiki/Rain
A droplet is a small column of liquid, bounded completely or almost completely by free surfaces which maintains its shape due to the surface tension of the liquid.
drop
No attempt is made to differentiate between drops and droplets. This may be added, if requested.
droplet
A droplet is a small column of liquid, bounded completely or almost completely by free surfaces which maintains its shape due to the surface tension of the liquid.
A droplet formed by condensation of vapour in an atmosphere and which is sufficiently massive to overcome atmospheric resistance and fall to a planetary surface due to gravity.
raindrop
A droplet of water
A defined class which should be filled by inference.
water droplet
raindrop
This is the class intended for use when describing raindrops on Earth. These typically have a diamter of 0.1 to 9 millimetres.
water raindrop
A solid material whose constituents, such as atoms, molecules or ions, are arranged in a highly ordered microscopic structure, forming a crystal lattice that extends in all directions.
This class refers to a portion of crystal and not an individual crystal.
crystal
A solid material whose constituents, such as atoms, molecules or ions, are arranged in a highly ordered microscopic structure, forming a crystal lattice that extends in all directions.
https://en.wikipedia.org/wiki/Crystal
A crystal which is primarily composed of water ice.
ice crystal
Any one of a number of macroscopic, crystalline forms in which ice appears, including hexagonal columns, hexagonal platelets, dendritic crystals, ice needles, and combinations of these forms. The crystal lattice of ice is hexagonal in its symmetry under most atmospheric conditions.
water ice crystal
Any one of a number of macroscopic, crystalline forms in which ice appears, including hexagonal columns, hexagonal platelets, dendritic crystals, ice needles, and combinations of these forms. The crystal lattice of ice is hexagonal in its symmetry under most atmospheric conditions.
A marginal sea biome which is located in a region with a temperate climate.
A component of the WWF Temperate Shelf and seas ecoregions grouping
temperate marginal sea biome
A marine biome which contains communities adapted to living in an environment determined by an upwelling process.
marine upwelling biome
A marine upwelling biome which is subject to tropical climate patterns.
tropical marine upwelling biome
A marine upwelling biome which is located in a region subject to temperate climate patterns.
temperate marine upwelling biome
An area of a planet's surface which is primarily covered by a shrubs, young trees, or stunted trees.. The surfaces of this area are in contact with an atmospheric column extending from the planetary boundary layer to the planet's exosphere with little to no physical obstruction.
As noted in Wikipedia: "Because the criteria are matters of degree rather than of kind, the definition of a subshrub is not sharply distinguishable from that of a shrub"
shrub/scrub
NLCD:52
area of shrub
According to the NLCD 2011, areas of scrub or shrub are dominated by shrubs; less than 5 meters tall with shrub canopy typically greater than 20% of total vegetation. This class includes true shrubs, young trees in an early successional stage or trees stunted from environmental conditions. Such thresholds - which are themselves fuzzy - are not asserted in this definition.
area of scrub
An area of a planet's surface which is primarily covered by a shrubs, young trees, or stunted trees.. The surfaces of this area are in contact with an atmospheric column extending from the planetary boundary layer to the planet's exosphere with little to no physical obstruction.
http://dx.doi.org/10.1016/j.rse.2015.07.014
https://en.wikipedia.org/wiki/Exosphere
https://en.wikipedia.org/wiki/Planetary_surface
https://en.wikipedia.org/wiki/Subshrub
https://www.mrlc.gov/nlcd11_leg.php
As noted in Wikipedia: "Because the criteria are matters of degree rather than of kind, the definition of a subshrub is not sharply distinguishable from that of a shrub"
https://en.wikipedia.org/wiki/Subshrub
A precipitation process is a process in which a portion of some substance segregates from a material in which that substance or its precursors were dissolved or suspended in and settles due to a force such as gravity or centrifugal force.
precipitation process
A precipitation process is a process in which a portion of some substance segregates from a material in which that substance or its precursors were dissolved or suspended in and settles due to a force such as gravity or centrifugal force.
https://en.wikipedia.org/wiki/Precipitation_%28chemistry%29
https://en.wikipedia.org/wiki/Precipitation
An area of a planet's surface which is primarily covered by cultivated or anthropically maintained vegetation planted for recreation, erosion control, or aesthetic purposes interspersed by constructed or manufactured objects and materials. This area is in contact with an atmospheric column extending from the planetary boundary layer to the planet's exosphere with little to no physical obstruction.
This class is in need of refinement, particularly in linking to other entities in the ontology. This would be helped by more clear listings of entities included in this classification. However, the class is suitable for use in annotating remotely sensed land types.
developed, open space
NLCD:21
According to the NLCD 2011, areas of developed open space are dominated by vegetation such as lawn grasses and include large-lot single-family housing units, parks, golf courses. Further, it is asserted that "impervious surfaces", most likely referring to concrete and related substances, cover less than 20% of the area. Such thresholds - which are themselves fuzzy - are not asserted in this definition.
area of developed open space
An area of a planet's surface which is primarily covered by cultivated or anthropically maintained vegetation planted for recreation, erosion control, or aesthetic purposes interspersed by constructed or manufactured objects and materials. This area is in contact with an atmospheric column extending from the planetary boundary layer to the planet's exosphere with little to no physical obstruction.
https://en.wikipedia.org/wiki/Exosphere
https://en.wikipedia.org/wiki/Planetary_surface
https://www.mrlc.gov/nlcd11_leg.php
An area of a planet's surface which is primarily covered by sedges or forbs, possibly interpersed with grasses or grass-like plants. This area is in contact with an atmospheric column extending from the planetary boundary layer to the planet's exosphere with little to no physical obstruction.
This class is in need of refinement, particularly in linking to other entities in the ontology. However, it is suitable for use in annotating remotely sensed land types.
sedge/herbaceous
NLCD:72
According to the NLCD 2011, at least 80% of these areas are covered by sedge or forbs. Such thresholds - which are themselves fuzzy - are not strictly asserted in this definition. The NLCD description also notes that land covered by sedge tundra and sedge tussock tundra are subsumed in this category. The original definition notes that this is intended as an "Alaska only" category.
area of sedge- and forb-dominated herbaceous vegetation
An area of a planet's surface which is primarily covered by sedges or forbs, possibly interpersed with grasses or grass-like plants. This area is in contact with an atmospheric column extending from the planetary boundary layer to the planet's exosphere with little to no physical obstruction.
https://en.wikipedia.org/wiki/Exosphere
https://en.wikipedia.org/wiki/Planetary_surface
https://www.mrlc.gov/nlcd11_leg.php
An area of a planet's surface which is primarily covered by gramanoid or herbaceous vegetation and which is not subject to intensive management by humans. This area is in contact with an atmospheric column extending from the planetary boundary layer to the planet's exosphere with little to no physical obstruction.
This class is in need of refinement, particularly in linking to other entities in the ontology. However, it is suitable for use in annotating remotely sensed land types.
grassland/herbaceous
NLCD:71
According to the NLCD 2011, at least 80% of these areas are covered by grasslands or non-woody, herbaceous plants. Such thresholds - which are themselves fuzzy - are not strictly asserted in this definition. The NLCD description also notes that, while no "intensive" management such as tilling is performed in these areas, they may be used for grazing.
area of gramanoid or herbaceous vegetation
An area of a planet's surface which is primarily covered by gramanoid or herbaceous vegetation and which is not subject to intensive management by humans. This area is in contact with an atmospheric column extending from the planetary boundary layer to the planet's exosphere with little to no physical obstruction.
https://en.wikipedia.org/wiki/Exosphere
https://en.wikipedia.org/wiki/Planetary_surface
https://www.mrlc.gov/nlcd11_leg.php
A hydrological process in which irregular aggregates of snow fall to the surface of an astronomical body.
This is currently bound to water-based snow on Earth, may need revisions for interplanetary applications
2021-04-14T18:57:18.275Z
snow fall
snowfall
A human house which serves as a long-term shelter for its inhabitants and within which they store personal property.
This is under "human house" due to the broad definition of "house".
This term is not to be used for hotels, hostels, inns and the like, which provides shorter-term stays.
residential building
An environmental system in which minimal to no anthropisation has occurred and non-human agents are the primary determinants of the system's dynamics and composition.
non-anthropised environment
non-anthropized environment
In most contexts, 'natural' is defined by the lack of intervention or influence by humans and their activities. On Earth, most environments fall on a scale between completely natural and anthropised.
natural environment
An environmental system in which minimal to no anthropisation has occurred and non-human agents are the primary determinants of the system's dynamics and composition.
https://en.wikipedia.org/wiki/Anthropization
https://en.wikipedia.org/wiki/Natural_environment
A process during which a natural environmental system is altered by human action.
anthropization
An area may be classified as anthropized even though it looks natural, such as grasslands that have been deforested by humans. It can be difficult to determine how much a site has been anthropized in the case of urbanization because one must be able to estimate the state of the landscape before significant human action.
anthropisation
A process during which a natural environmental system is altered by human action.
https://en.wikipedia.org/wiki/Anthropization
An area may be classified as anthropized even though it looks natural, such as grasslands that have been deforested by humans. It can be difficult to determine how much a site has been anthropized in the case of urbanization because one must be able to estimate the state of the landscape before significant human action.
https://en.wikipedia.org/wiki/Anthropization
A planet that is composed primarily of silicate rocks or metals.
rocky planet
telluric planet
Earth-like planet
terrestrial planet
A planet that is composed primarily of silicate rocks or metals.
https://en.wikipedia.org/wiki/Terrestrial_planet
A manufactured product which is designed to catch and hold animals.
animal trap
A manufactured product which is designed to catch and hold animals.
http://www.thefreedictionary.com/trap
A process whereby a volume of liquid moves due to a disequilibrium of physical forces.
This class can refer to the flow of any material in a liquid phase.
mass liquid flow
A process whereby a volume of liquid moves due to a disequilibrium of physical forces.
https://en.wikipedia.org/wiki/Wind
A material transport process during which a volume of liquid water is transported due to a disequilibria in physical forces.
water flow process
An exchangeable device which can be connected to a plumbing system to deliver and drain water.
plumbing fixture
An exchangeable device which can be connected to a plumbing system to deliver and drain water.
https://en.wikipedia.org/wiki/Plumbing_fixture
A planned process during which raw or recycled materials are transformed into products for use or sale using labour and machines, tools, chemical and biological processing, or formulation.
The term may refer to a range of human activity, from handicraft to high tech, but is most commonly applied to industrial production, in which raw materials are transformed into finished goods on a large scale.
manufacturing process
A planned process during which raw or recycled materials are transformed into products for use or sale using labour and machines, tools, chemical and biological processing, or formulation.
https://en.wikipedia.org/wiki/Manufacturing
The term may refer to a range of human activity, from handicraft to high tech, but is most commonly applied to industrial production, in which raw materials are transformed into finished goods on a large scale.
https://en.wikipedia.org/wiki/Manufacturing
An process during which natural or manufactured materials and products are processed and arranged by humans or their technology into structures.
The nature of "structures" must be further specified.
human-directed construction process
An environmental system which is determined by materials bearing roughly homogeneous qualities.
Organisational class. Not intended for annotation.
environmental system determined by a quality
An environmental system within which an environmental material strongly influences the system's composition and properties.
Organisational class. Not intended for annotation. Subclasses describe environments which are usually permeated by an environmental material. They may also describe environments which are sufficiently close to a material, that their dynamics are strongly influenced by it (e.g. a patch of forest ecosystem neighbouring a uranium dump).
environmental system determined by a material
An environmental system which is determined by a living organism.
host-associated environment
environmental system determined by an organism
An environmental system determined by a green plant.
Plant
plant environment
Viridiplantae-associated environment
plant-associated environment
Plant
http://press.igsb.anl.gov/earthmicrobiome/protocols-and-standards/emp-ontology-empo/
An environmental system determined by an animal.
Animal
animal environment
Metazoan-associated environment
animal-associated environment
Animal
http://press.igsb.anl.gov/earthmicrobiome/protocols-and-standards/emp-ontology-empo/
A meteor is any matter- or energy-based entity which is located in the atmosphere of an astronomical body.
meteor
A meteor is any matter- or energy-based entity which is located in the atmosphere of an astronomical body.
https://cloudatlas.wmo.int/other-meteors.html
A meteor which is primarily composed of water.
hydrometeor
A meteor which is primarily composed of water.
https://cloudatlas.wmo.int/other-meteors.html
A meteor which is primarily composed of rock.
lithometeor
A lake which has formed as the result of processes that are not or are only minimally driven by human activity.
This class is to be filled by inference.
natural lake
A process during which energy is emitted or transmitted in the form of waves or particles through space or a material medium.
Requires addition of waves for full axiomatisation. This should be linked to "subatomic particle" with an "or". Note that ENVO represents space as an environmental material (a hard vacuum with sparse material inclusions).
radiation
A process during which energy is emitted or transmitted in the form of waves or particles through space or a material medium.
https://en.wikipedia.org/wiki/Radiation
A radiation process during which energy is transmitted or emitted by means of fast-moving subatomic particles.
particle radiation
A radiation process during which energy is transmitted or emitted by means of fast-moving subatomic particles.
https://en.wikipedia.org/wiki/Particle_radiation
A radiation process during which waves (or their quanta, photons) of the electromagnetic field propagate (radiate) through space carrying electromagnetic energy.
EM radiation
Note that this class is concerned only with active radiative processes: static electric and magnetic fields are not inlcuded. All electromagnetic radiation carries radiant energy.
electromagnetic radiation
A radiation process during which waves (or their quanta, photons) of the electromagnetic field propagate (radiate) through space carrying electromagnetic energy.
https://en.wikipedia.org/wiki/Electromagnetic_radiation
An environment which is determined by materials which bear significant concentrations of salts.
Saline
The thresholds for "significant" concentrations of salts vary widely and thus no committment is made in this class. Subclasses with more explicit thresholds can be made upon request.
saline environment
Saline
http://press.igsb.anl.gov/earthmicrobiome/protocols-and-standards/emp-ontology-empo/
An environmental system which has its properties and dynamics determined by soil.
Soil (non-saline)
soil environment
Soil (non-saline)
http://press.igsb.anl.gov/earthmicrobiome/protocols-and-standards/emp-ontology-empo/
An environmental system which has its properties and dynamics determined by sediment.
sediment environment
An environmental system which has its properties and dynamics determined by an aerosol.
aerosol environment
An environmental system which has its properties and dynamics determined by a saline aerosol.
Aerosol (saline)
saline aerosol environment
Aerosol (saline)
http://press.igsb.anl.gov/earthmicrobiome/protocols-and-standards/emp-ontology-empo/
seaspray or other aerosolized saline material (>5 psu)
An environmental system which has its properties and dynamics determined by an aerosol with a low concentration of dissolved solutes.
Aerosol (non-saline)
non-saline aerosol environment
Aerosol (non-saline)
http://press.igsb.anl.gov/earthmicrobiome/protocols-and-standards/emp-ontology-empo/
aerosolized dust or liquid
An environmental system determined by part of a living or dead animal, or a whole small animal.
Animal corpus
environment associated with an animal part or small animal
Animal corpus
http://press.igsb.anl.gov/earthmicrobiome/protocols-and-standards/emp-ontology-empo/
An environmental system determined by part of a living or dead plant, or a whole small plant.
Plant corpus
environment associated with a plant part or small plant
Plant corpus
http://press.igsb.anl.gov/earthmicrobiome/protocols-and-standards/emp-ontology-empo/
An astronomical body which is composed of rocky or metallic materials and is considerably smaller than asteroids.
meteoroid
An astronomical body which is composed of rocky or metallic materials and is considerably smaller than asteroids.
https://en.wikipedia.org/wiki/Meteoroid
A material which is composed primarily of one or more pure metals and which shows their properties.
Far more axiomatisation can be done should the qualities of metals be added to PATO or a similar quality ontology. However, note that there are many exceptions to the typical qualities of the majority of metals.
metal
While this class allows for some degree of contamination by non-metal substances, the material represented should show at least some of the typical features of a pure metal: hardness (except for liquid metals), opacity, lustre, malleability, fusibility, ductile and good electrical and thermal conductivity.
metallic material
A material which is composed primarily of one or more pure metals and which shows their properties.
https://en.wikipedia.org/wiki/Metal
A process during which microscopic solid or liquid objects are formed.
particle formation
particulate matter formation process
A process during which microscopic solid or liquid objects are formed.
https://en.wikipedia.org/wiki/Particulates
An aerosol formation process which occurs in an atmosphere.
atmospheric aerosol formation
atmospheric aerosol formation
An aerosol formation process which occurs in an atmosphere.
https://en.wikipedia.org/wiki/Particulates
A process during which an aerosol, consisting of solid particulates suspended in a gas, is formed in an atmosphere.
formation of solid particles in an atmosphere
formation of a solid aerosol in an atmosphere
A process during which an aerosol, consisting of solid particulates suspended in a gas, is formed in an atmosphere.
https://en.wikipedia.org/wiki/Particulates
A process during which an aerosol, consisting of droplets of liquid suspended in gas, is formed in an atmosphere.
formation of liquid droplets in an atmosphere
formation of liquid particles in an atmosphere
formation of a liquid aerosol in an atmosphere
A process during which an aerosol, consisting of droplets of liquid suspended in gas, is formed in an atmosphere.
https://en.wikipedia.org/wiki/Particulates
An aerosol which has non-gaseous parts that are primarily composed of liquid droplets.
SWEETRealm:Aerosol
liquid aerosol
aerosolised liquids
An aerosol which has non-gaseous parts that are primarily composed of liquid droplets.
https://en.wikipedia.org/wiki/Aerosol
An aerosol which has non-gaseous parts that are primarily composed of solid particles.
SWEETRealm:Aerosol
solid aerosol
aerosolised solids
An aerosol which has non-gaseous parts that are primarily composed of solid particles.
https://en.wikipedia.org/wiki/Aerosol
A process during which microscopic solid particulates are formed from gaseous materials in an atmosphere.
atmospheric formation of a solid aerosol
formation of a solid aerosol in an atmosphere
formation of a solid aerosol in the atmosphere
formation of solid particles from gaseous material in an atmosphere
formation of a solid aerosol from gaseous material in an atmosphere
A process during which microscopic solid particulates are formed from gaseous materials in an atmosphere.
https://en.wikipedia.org/wiki/Particulates
A process during which microscopic liquid droplets are formed from gaseous materials in an atmosphere.
atmospheric formation of a liquid aerosol
formation of a liquid aerosol in an atmosphere
formation of a liquid aerosol in the atmosphere
formation of liquid droplets from gaseous material in an atmosphere
formation of liquid particles from gaseous material in an atmosphere
formation of a liquid aerosol from gaseous material in an atmosphere
A process during which microscopic liquid droplets are formed from gaseous materials in an atmosphere.
https://en.wikipedia.org/wiki/Particulates
A process during which pieces of a planetary crust and uppermost mantle move.
tectonic movement
A process during which pieces of a planetary crust and uppermost mantle move.
https://en.wikipedia.org/wiki/Plate_tectonics
https://en.wikipedia.org/wiki/List_of_tectonic_plates
A part of a lithosphere which is separated by other such parts by geographic faults or similar geomorphological discontinuities.
tectonic plate
A part of a lithosphere which is separated by other such parts by geographic faults or similar geomorphological discontinuities.
https://en.wikipedia.org/wiki/List_of_tectonic_plates
2
A geomorphological feature which is formed where two or more tectonic plates move towards, away from, or along one another, resulting in deformation of the lithosphere.
tectonic plate boundary
A geomorphological feature which is formed where two or more tectonic plates move towards, away from, or along one another, resulting in deformation of the lithosphere.
https://en.wikipedia.org/wiki/Plate_tectonics
An environmental system which includes both living and non-living components.
LTER:173
This class will be primarily filled by inference, any environmental system which necessarily includes living parts should be autoclassified here.
ecosystem
An environmental system which includes both living and non-living components.
https://en.wikipedia.org/wiki/Ecosystem
LTER:173
https://vocab.lternet.edu/vocab/vocab/index.php?tema=173&/ecosystems
Organic material which is primarily composed of plant structures, living or dead.
plant matter
A planet which is primarily composed of hydrogen and helium.
Gas giants are composed of about 90% hydrogen and helium. Jupiter and Saturn are examples of gas giants.
gas planet
A planet which is primarily composed of hydrogen and helium.
http://solarsystem.nasa.gov/planets/whatisaplanet
https://en.wikipedia.org/wiki/List_of_planet_types
https://en.wikipedia.org/wiki/Planet
An ice is an environmental material which is either frozen or which is maintained in a solid state by gravitational forces or pressure.
Note that ice may be formed at very high temperatures, due to gravitational effects and/or pressure.
ice
A planet which has a surface layer that nearly completely or completely covered by water, and which has a substantial portion of its mass composed of water.
An axiom to express that the planet has a 'substantial' proportion of its mass in the form of water wound enhance this class.
aquaplanet
panthalassic planet
water world
While this planetary form is still mostly theoretical, strong candidates exist such as the extrasolar planet GJ 1214 b and ocean planet candidate Kepler-22b.
ocean planet
A planet which has a surface layer that nearly completely or completely covered by water, and which has a substantial portion of its mass composed of water.
https://en.wikipedia.org/wiki/Ocean_planet
A planet which has a surface layer that nearly completely or completely covered by ice, and which has a substantial portion of its mass composed of ice.
cryoplanet
While this planetary form is still mostly theoretical, strong candidates exist such as OGLE-2005-BLG-390Lb, OGLE-2013-BLG-0341L b and MOA-2007-BLG-192Lb. Pluto was considered an ice planet until its reclassification in 2006 CE. Surface temperatures of ice planets would have to be below 260 K (−13°C) if composed primarily of water, below 180 K (−93°C) if primarily composed of CO2 and ammonia, and below 80 K (−193°C) if composed primarily of methane.
ice planet
A planet which has a surface layer that nearly completely or completely covered by ice, and which has a substantial portion of its mass composed of ice.
https://en.wikipedia.org/wiki/Ice_planet
While this planetary form is still mostly theoretical, strong candidates exist such as OGLE-2005-BLG-390Lb, OGLE-2013-BLG-0341L b and MOA-2007-BLG-192Lb. Pluto was considered an ice planet until its reclassification in 2006 CE. Surface temperatures of ice planets would have to be below 260 K (−13°C) if composed primarily of water, below 180 K (−93°C) if primarily composed of CO2 and ammonia, and below 80 K (−193°C) if composed primarily of methane.
https://en.wikipedia.org/wiki/Ice_planet
Ice which is primarily composed of carbon dioxide.
dry ice
carbon dioxide ice
Ice which is primarily composed of carbon dioxide.
https://en.wikipedia.org/wiki/Ice
A gas planet which has an atmosphere composed primarily of helium.
The placement of this class assumes that some traces of hydrogen are left in the atmosphere. If this is not the case, the axiom on gas planet must be updated.
A helium planet might form via hydrogen evaporation from a gaseous planet orbiting close to a star. Low-mass white dwarfs may transition into objects which are essentially helium planets by hydrogen depletion through mass transfer to a massive object such as a neutron star. Gliese 436 b is a candidate helium planet.
helium planet
A gas planet which has an atmosphere composed primarily of helium.
https://en.wikipedia.org/wiki/Helium_planet
A helium planet might form via hydrogen evaporation from a gaseous planet orbiting close to a star. Low-mass white dwarfs may transition into objects which are essentially helium planets by hydrogen depletion through mass transfer to a massive object such as a neutron star. Gliese 436 b is a candidate helium planet.
https://en.wikipedia.org/wiki/Helium_planet
A material which is composed primarily of chemical elements and compounds with relatively low boiling points, equilibrium condensation temperatures below 1300 Kelvin, and which are part of the crust or atmosphere of a moon or planet.
Add and axiomatise with moon and lunar crust
volatile
Examples include nitrogen, water, carbon dioxide, ammonia, hydrogen, methane and sulfur dioxide. In astrogeology, these compounds, in their solid state, often comprise large proportions of the crusts of moons and dwarf planets.
volatile astrogeological material
A material which is composed primarily of chemical elements and compounds with relatively low boiling points, equilibrium condensation temperatures below 1300 Kelvin, and which are part of the crust or atmosphere of a moon or planet.
https://en.wikipedia.org/wiki/Volatiles
Examples include nitrogen, water, carbon dioxide, ammonia, hydrogen, methane and sulfur dioxide. In astrogeology, these compounds, in their solid state, often comprise large proportions of the crusts of moons and dwarf planets.
https://en.wikipedia.org/wiki/Volatiles
An astrogeological volatile which is composed primarily of chemical compounds with boiling points around those of hydrogen and helium.
gas
This is a term native to the fields of planetary science and astrophysics. Hydrogen has a boiling point of 20.271 Kelvin and a melting point of 13.99 Kelvin. Helium has a boiling point of 4.222 Kelvin and a melting point of 0.95 Kelvin.
astrogeological gas
An astrogeological volatile which is composed primarily of chemical compounds with boiling points around those of hydrogen and helium.
https://en.wikipedia.org/wiki/Volatiles
A quality which inheres in a astronomical body or astronomical body part by virtue of the variation in its material composition, participation in geological processes, and the variation in is land- and hydroforms.
Materials which are usually assessed when appraising geodiversity include minerals, rocks, sediments, fossils, soils and water. Landforms factored into geodiversity metrics typically include folds, faults, and other expressions of morphology or relations between units of earth material. Natural processes that are included in measures of geodiversity are those which either maintain or change materials or geoforms, including tectonics, sediment transport, and pedogenesis. Geodiversity does not usually factor in anthropogenic entities.
geodiversity
A quality which inheres in a astronomical body or astronomical body part by virtue of the variation in its material composition, participation in geological processes, and the variation in is land- and hydroforms.
https://en.wikipedia.org/wiki/Geodiversity
Materials which are usually assessed when appraising geodiversity include minerals, rocks, sediments, fossils, soils and water. Landforms factored into geodiversity metrics typically include folds, faults, and other expressions of morphology or relations between units of earth material. Natural processes that are included in measures of geodiversity are those which either maintain or change materials or geoforms, including tectonics, sediment transport, and pedogenesis. Geodiversity does not usually factor in anthropogenic entities.
An ecosystem which has been causally isolated from a larger ecosystem within which it was previously embedded, such that the direct exchange of materials, resources, and energy between these systems is severely or entirely curtailed.
Often, ecosystem fragments are unable to sustain themselves without human intervention and management as they are not large enough to perform self-sustaining functions (e.g. nutrient recycling) or hold sufficient ecological resources such as genetic diversity of populations.
ecosystem fragment
A process during which one or more parts of an ecosystem become causally isolated such that the direct flow or exchange of materials, resources, and energy between a given fragment and the remainder of the original system is severely curtailed or entirely halted.
ecosystem fragmentation process
A process during which one or more parts of an ecosystem become causally isolated such that the direct flow or exchange of materials, resources, and energy between a given fragment and the remainder of the original system is severely curtailed or entirely halted.
https://en.wikipedia.org/wiki/Ecosystem_decay
https://en.wikipedia.org/wiki/Habitat_fragmentation
https://en.wikipedia.org/wiki/Population_fragmentation
A process during which an ecosystem, its parts, or the processes it participates in are modified by human intervention to accomplish an objective.
ecosystem management
Umweltmaßnahme
environmental management
active ecosystem management process
A process during which an ecosystem, its parts, or the processes it participates in are modified by human intervention to accomplish an objective.
https://www.iucn.org/theme/protected-areas/about/protected-areas-categories/category-iv-habitatspecies-management-area
Umweltmaßnahme
https://orcid.org/0000-0002-9620-2832
www.awi.de/internas
An environment which has its properties and composition largely determined by the presence of a metazoan which lacks a vetebral column and which has a habitat that is found in an aquatic environmental system.
http://purl.jp/bio/11/meo/MEO_0000871
environment associated with an aquatic invertebrate
http://purl.jp/bio/11/meo/MEO_0000871
Not currently live, may need to be switched to alternative PURLs.
Soil which has increased levels of molecules or ions capable of donating a hydron (proton or hydrogen ion) to other chemical entities, or, alternatively, capable of forming covalent bonds with other chemicals via the acceptance of an electron pair, resulting in a bulk pH measurement of less than 7.
acidic soil
Soil which has increased levels of molecules or ions capable of donating a hydron (proton or hydrogen ion) to other chemical entities, or, alternatively, capable of forming covalent bonds with other chemicals via the acceptance of an electron pair, resulting in a bulk pH measurement of less than 7.
https://en.wikipedia.org/wiki/Acid
This class will be axiomatised with "alga" once an approach to handle this term's ambiguous semantics has been agreed with PCO.
An organic material which is primarily composed of living or dead algae, along with their exudates.
algal material
An organic material which is primarily composed of living or dead algae, along with their exudates.
https://en.wikipedia.org/wiki/Algae
The surface layer of a volume of water.
EcoLexicon:surface_water
SWEETRealm:SurfaceWater
https://en.wikipedia.org/wiki/Surface_water
surface of a body of water
water body surface
water surface
The surface layer of a mass of sediment.
surface of a sedimentary mass
surface sediment
sediment surface
An environmental zone which is bounded by material parts of a land mass or the atmosphere or space adjacent to it.
terrestrial environmental zone
A terrestrial zone which is bounded by constructed, manufactured, or other anthropogenic material entities.
anthropised terrestrial environmental zone
A process during which sediments compact under pressure, expel connate fluids, and gradually become solid sedimentary rock.
lithification
A process during which sediments compact under pressure, expel connate fluids, and gradually become solid sedimentary rock.
https://en.wikipedia.org/wiki/Lithification
An ecosystem in which grasses (Graminae) are the dominant form of vegetation and determine the system's structure and dynamics.
EcoLexicon:grassland
FTT:259
FTT:760
FTT:766
Geonames:V.GRSLD
LTER:232
TGN:21604
TGN:54052
GRASSLAND
grassland
Grassland
down
downland
downs
glade
grazing area
herbaceous area
grassland ecosystem
An ecosystem in which grasses (Graminae) are the dominant form of vegetation and determine the system's structure and dynamics.
https://en.wikipedia.org/wiki/Grassland
GRASSLAND
USGS:SDTS
grassland
Geonames:feature
Grassland
NASA:earthrealm
down
USGS:SDTS
downland
USGS:SDTS
downs
USGS:SDTS
glade
ADL:FTT
glade
USGS:SDTS
grazing area
ADL:FTT
grazing area
Getty:TGN
herbaceous area
USGS:SDTS
A terrestrial ecosystem which is inundated or saturated by surface or ground water at a frequency and duration sufficient to support, and that under normal circumstances does support, a prevalence of vegetation typically adapted for life in saturated soil conditions.
EcoLexicon:wetland
FTT:1001
FTT:1060
FTT:1061
FTT:1118
FTT:1180
FTT:1190
FTT:1206
FTT:1207
FTT:1226
FTT:184
FTT:185
FTT:228
FTT:281
FTT:480
FTT:716
FTT:883
FTT:934
FTT:945
FTT:983
Geonames:H.WTLD
LTER:630
SPIRE:Bog
SWEETRealm:Wetland
TGN:21301
TGN:21304
TGN:21305
https://en.wikipedia.org/wiki/Wetland
WETLAND
Wetland
EstuarineWetland
LacustrineWetland
MarineWetland
PalustrineWetland
RiparianWetland
TerrestialWetland
back marsh
backswamp
backwater
barrier flat
blanket bog
bog
cienaga
dismal
everglade
floating marsh
forested wetland
marsh
mire
mud flat
peat cutting area
peatland
quagmire
quaking bog
riparian area
slash
slough
slue
swamp forest
tulelands
moor
morass
muskeg
wetland ecosystem
A terrestrial ecosystem which is inundated or saturated by surface or ground water at a frequency and duration sufficient to support, and that under normal circumstances does support, a prevalence of vegetation typically adapted for life in saturated soil conditions.
https://en.wikipedia.org/wiki/Wetland
WETLAND
USGS:SDTS
Wetland
NASA:earthrealm
EstuarineWetland
NASA:earthrealm
LacustrineWetland
NASA:earthrealm
MarineWetland
NASA:earthrealm
PalustrineWetland
NASA:earthrealm
RiparianWetland
NASA:earthrealm
TerrestialWetland
NASA:earthrealm
back marsh
USGS:SDTS
backswamp
USGS:SDTS
backwater
ADL:FTT
barrier flat
USGS:SDTS
blanket bog
USGS:SDTS
bog
ADL:FTT
bog
Getty:TGN
cienaga
ADL:FTT
dismal
USGS:SDTS
everglade
USGS:SDTS
floating marsh
USGS:SDTS
forested wetland
ADL:FTT
marsh
ADL:FTT
mire
ADL:FTT
mire
USGS:SDTS
mud flat
ADL:FTT
peat cutting area
ADL:FTT
peatland
ADL:FTT
quagmire
ADL:FTT
quagmire
USGS:SDTS
quaking bog
USGS:SDTS
riparian area
ADL:FTT
slash
USGS:SDTS
slough
ADL:FTT
slough
Getty:TGN
slough
USGS:SDTS
slue
ADL:FTT
swamp forest
USGS:SDTS
tulelands
USGS:SDTS
moor
USGS:SDTS
morass
USGS:SDTS
muskeg
USGS:SDTS
An electromagnetic radiation process during which electromagnetic waves or their quanta are emitted from a star.
NCIT:C44445
solar radiation
stellar radiation
An electromagnetic radiation process during which electromagnetic waves or their quanta are emitted from a star.
https://en.wikipedia.org/wiki/Electromagnetic_radiation
https://en.wikipedia.org/wiki/Solar_irradiance
solar radiation
NCIT:C44445
A process during which liquid water accumulates in a site, most often in some form of container.
water accumulation process
A commercial building which contains parts used as workplaces primarily for administrative and managerial workers.
"An office building will be divided into sections for different companies or may be dedicated to one company. In either case, each company will typically have a reception area, one or several meeting rooms, singular or open-plan offices, as well as toilets."
office building
A commercial building which contains parts used as workplaces primarily for administrative and managerial workers.
https://en.wikipedia.org/wiki/Office#Office_buildings
"An office building will be divided into sections for different companies or may be dedicated to one company. In either case, each company will typically have a reception area, one or several meeting rooms, singular or open-plan offices, as well as toilets."
https://en.wikipedia.org/wiki/Office#Office_buildings
A building which is primarily used to facilitate the buying or selling of goods or services.
"Commerce includes legal, economic, political, social, cultural and technological systems that are in operation in any country or internationally."
commercial building
A building which is primarily used to facilitate the buying or selling of goods or services.
https://en.wikipedia.org/wiki/Commercial_building
"Commerce includes legal, economic, political, social, cultural and technological systems that are in operation in any country or internationally."
https://en.wikipedia.org/wiki/Commerce
A building part within which administrative work is done by an organisations users in order to support and realise the objectives of that organization.
office
A building part within which administrative work is done by an organisations users in order to support and realise the objectives of that organization.
https://en.wikipedia.org/wiki/Office#Office_buildings
A natural environment which is located on a land mass.
terrestrial natural environment
A natural environment which is within a water body.
aquatic natural environment
A marginal sea biome which is located in a region with a tropical climate.
A class which is complementary to the WWF Temperate Shelf and Seas ecoregions grouping
tropical marginal sea biome
EcoLexicon:canopy
LTER:82
SWEETRealm:Canopy
https://en.wikipedia.org/wiki/Canopy
forest canopy
A canopy which is part of a woodland ecosystem.
EcoLexicon:canopy
LTER:82
SWEETRealm:Canopy
https://en.wikipedia.org/wiki/Canopy
woodland canopy
A canopy which is composed of the aboveground portion, or crowns, of a community of crop plants.
EcoLexicon:canopy
LTER:82
SWEETRealm:Canopy
https://en.wikipedia.org/wiki/Canopy
crop canopy
A vegetation layer which is formed by a collection of individual plant crowns, themselves constituting part of the aboveground portion of a plant community.
EcoLexicon:canopy
LTER:82
SWEETRealm:Canopy
false
canopy
A vegetation layer which is formed by a collection of individual plant crowns, themselves constituting part of the aboveground portion of a plant community.
https://en.wikipedia.org/wiki/Canopy_%28biology%29
An ecosystem which is determined by communities of plants with a tree growth form and in which members of those communities form continuous or discontinuous regions of canopy cover.
forest ecosystem
The definitions of forest can vary greatly, and different classes will be needed to support the major categories. Tree cover alone is not enough to distinguish between forests and plantations. The international definition proposed by the 2010 FAO Forestry Resource Assessment: "land spanning more than 0.5 ha with trees higher than 5 metres and canopy cover of more than 10 percent, or trees able to reach these thresholds in situ . It does not include land that is predominantly under agricultural or urban land use." - FAO. 2010. Global forest resources assessment 2010, Main report, FAO Forestry Paper 163. Rome.
forest
An ecosystem which is determined by communities of plants with a tree growth form and in which members of those communities form continuous or discontinuous regions of canopy cover.
http://www.fao.org/docrep/017/ap862e/ap862e00.pdf
https://www1.usgs.gov/csas/nvcs/nvcsGetUnitDetails?elementGlobalId=860217
An ecosystem which 1) is determined by communities of annual crops, perennial woody crops, or by actively tilled land, 2) is primarily used for agricultural activity, and 3) contains no village or larger human settlement.
cropland ecosystem
An ecosystem which 1) is determined by communities of annual crops, perennial woody crops, or by actively tilled land, 2) is primarily used for agricultural activity, and 3) contains no village or larger human settlement.
An ecosystem which is determined by communities of plants with a tree growth form and in which members of those communities are spaced sufficiently far apart to allow sunlight to illuminate the understory.
The correct usage of FLOPO terms in the axiomatisation needs to be confirmed.
Woodland understories are often populated with communities of shrubs and herbaceous plants including grasses. There are varying distinctions between woodland and forest, with a large degree of ambiguity.
woodland ecosystem
An ecosystem which is determined by communities of plants with a tree growth form and in which members of those communities are spaced sufficiently far apart to allow sunlight to illuminate the understory.
https://en.wikipedia.org/wiki/Woodland
A process during which humans rear animals or plants on land for harvest and consumption.
Expand the sites of occurrence listed as axioms as new terms emerge.
agriculture
agricultural process
A process during which humans rear animals or plants on land for harvest and consumption.
http://www.fao.org/docrep/003/x6941e/x6941e04.htm#bm04
A layer which is primarily composed of some liquid material.
liquid layer
A layer which is primarily composed of some solid material, allowing for non-solid parts such as interstitial pockets of gas or liquid.
solid layer
A solid layer which is primarily composed of some water-based ice.
water ice layer
A vegetated area which has not been cleared or is sparsely settled, usually scrub-covered or forested
the bush
"Bush" is a rather loosely defined regional term, primarily used in Australia.
bush area
A vegetated area which has not been cleared or is sparsely settled, usually scrub-covered or forested
https://www.merriam-webster.com/dictionary/bush#h1
An environmental zone which is part of an atmosphere.
atmospheric area
atmospheric zone
A vegetated area is a geographic feature which has ground cover dominated by plant communities.
ORCID:0000-0002-4366-3088
vegetated area
A liquid astronomical body part which is primarily composed of a continuous volume of liquid water and is held in shape or sustained by an environmental process.
Should create links to envrionmental process with new relation like "sustained_by"
Similar, in spirit, to landform.
hydroform
Should create links to envrionmental process with new relation like "sustained_by"
ORCID:0000-0002-4366-3088
A liquid surface layer which is in contact with air.
liquid air-water interface layer
A surface layer which is composed primarily of some liquid.
liquid surface layer
A surface layer which is composed primarily of solid environmental material.
solid surface layer
A body of water which is primarily composed of saline water.
saline body of water
This class has its subclasses populated by inference.
saline water body
A material transport process during which a volume of material is displaced due to a disequilibrium in physical forces and during which 1) the qualities that inhere in that volume and 2) the processes that are unfolding within it are largely unchanged.
advective transport
Advective processes are disjoint from diffusive processes. Typically, fluids are advected.
advective transport process
A material transport process during which a volume of material is displaced due to a disequilibrium in physical forces and during which 1) the qualities that inhere in that volume and 2) the processes that are unfolding within it are largely unchanged.
https://en.wikipedia.org/wiki/Advection
https://en.wikipedia.org/wiki/Intensive_and_extensive_properties
A water flow process during which movements of water masses caused by varying gravitational and rotational forces from astronomical bodies, combined with the rotation of the astronomical body containing the water mass, cause waters to undergo periodic depth oscillations (tides).
tidal flow
tidal flow process
An action of exogenic processes (such as water flow or wind) which remove environmental material from one location on the surface of an astronomical body, transporting it to another location where it is deposited.
erosion
An action of exogenic processes (such as water flow or wind) which remove environmental material from one location on the surface of an astronomical body, transporting it to another location where it is deposited.
https://en.wikipedia.org/wiki/Erosion
A landform which has been rendered barren or partially barren by environmental extremes, especially by low rainfall, and which loses more liquid water by evapotranspiration than is supplied by precipitation.
desert
A process during which particles suspended in a gaseous medium are formed.
new particle formation process
aerosolised particle formation process
A process during which particles suspended in a gaseous medium are formed.
https://en.wikipedia.org/wiki/Aerosol
https://en.wikipedia.org/wiki/Particulates
A material transport process during which solid or liquid particles are directly introduced into a volume of gas.
primary aerosol formation
primary aerosol formation process
A material transport process during which solid or liquid particles are directly introduced into a volume of gas.
https://en.wikipedia.org/wiki/Aerosol
https://en.wikipedia.org/wiki/Particulates
An organic environmental material which is primarily composed of gill tissue.
gill tissue material
An anthropogenic environment which is bounded by the building envelope of a laboratory and in which a system of manufactured products exert control on one or more of its environmental conditions.
laboratory environment
A research facility in which systems of manufactured products control internal conditions and in which scientific or technological research, experiments, and measurement may be performed.
research laboratory
laboratory facility
A research facility in which systems of manufactured products control internal conditions and in which scientific or technological research, experiments, and measurement may be performed.
https://en.wikipedia.org/wiki/Laboratory
An anthropisation process during which terrestrial environments - natural or anthropised - or parts thereof are altered to facilitate human activities such as agriculture, settlement, or commerce.
land conversion
land development
Further examples include subdividing real estate into lots, typically for the purpose of building homes and converting unused factories into condominia.
land conversion process
An anthropisation process during which terrestrial environments - natural or anthropised - or parts thereof are altered to facilitate human activities such as agriculture, settlement, or commerce.
https://en.wikipedia.org/wiki/Land_development
Further examples include subdividing real estate into lots, typically for the purpose of building homes and converting unused factories into condominia.
https://en.wikipedia.org/wiki/Land_development
A land conversion process during which terrestrial ecosystems are altered to facilitate agricultural activities such as crop cultivation or the rearing of livestock.
agricultural land conversion
This process typically relies on the conversion and development of forests, savannas or grassland. Creation of farmland from wasteland, deserts or previous impervious surfaces is considerably less frequent because of the presence of degraded soil or the lack of fertile soil.
agricultural land conversion process
A land conversion process during which terrestrial ecosystems are altered to facilitate agricultural activities such as crop cultivation or the rearing of livestock.
https://en.wikipedia.org/wiki/Land_development
This process typically relies on the conversion and development of forests, savannas or grassland. Creation of farmland from wasteland, deserts or previous impervious surfaces is considerably less frequent because of the presence of degraded soil or the lack of fertile soil.
https://en.wikipedia.org/wiki/Land_development
An anthropogenic environmental process which includes all human activities undertaken in a natural, semi-natural, or anthropised environment.
There are multiple systems of land use classification. This hierarchy aims to be generally applicable, but national systems can be added on request.
land use process
An anthropogenic environmental process which includes all human activities undertaken in a natural, semi-natural, or anthropised environment.
https://assets.publishing.service.gov.uk/government/uploads/system/uploads/attachment_data/file/11493/144275.pdf
https://en.wikipedia.org/wiki/Land_use
A land use process during which materials of economic value are extracted from a planet, usually from an orebody, lode, vein, seam, reef or placer deposit.
mining
terrestrial mining
A land use process during which materials of economic value are extracted from a planet, usually from an orebody, lode, vein, seam, reef or placer deposit.
https://assets.publishing.service.gov.uk/government/uploads/system/uploads/attachment_data/file/11493/144275.pdf
https://en.wikipedia.org/wiki/Land_use
https://en.wikipedia.org/wiki/Mining
https://www.eionet.europa.eu/gemet/en/concept/14837
A process during which an ecosystem - natural or anthropised - is changed by the actions of humans.
anthropogenic ecosystem conversion process
A planned process during which humans access and obtain resources, benefits, or services from a natural or anthropised ecosystem.
planned environmental usage process
A planned environmental usage process during which a non-renewable resource such as petroleum, natural gas, or water is extracted from an ecosystem.
mining
A planned environmental usage process during which a non-renewable resource such as petroleum, natural gas, or water is extracted from an ecosystem.
https://assets.publishing.service.gov.uk/government/uploads/system/uploads/attachment_data/file/11493/144275.pdf
https://en.wikipedia.org/wiki/Land_use
https://en.wikipedia.org/wiki/Mining
https://www.eionet.europa.eu/gemet/en/concept/14837
A mining process which occurs in a marine ecosystem.
marine mining
A mining process during which coal is extracted from the rocky portion of an astronomical body.
This may be either terrestrial or marine.
coal mining
A mining process during which coal is extracted from the rocky portion of an astronomical body.
https://en.wikipedia.org/wiki/Mining
https://www.eionet.europa.eu/gemet/en/concept/1507
A land use process during which terrestrial environments are modified such that they can grow crop plants or allow the rearing of animals to provide food, fiber, medicines, or other products used by humans.
"Agriculture includes horticulture, fruit growing, seed growing, dairy farming, the breeding and keeping of livestock (including any creature kept for the production of food, wool, skins or fur), the use of land as grazing land, meadow land, osier land, market gardens and nursery grounds, and the use of woodlands where that use is ancillary to the farming of land for other agricultural purposes."
agriculture
A land use process during which terrestrial environments are modified such that they can grow crop plants or allow the rearing of animals to provide food, fiber, medicines, or other products used by humans.
https://assets.publishing.service.gov.uk/government/uploads/system/uploads/attachment_data/file/11493/144275.pdf
https://en.wikipedia.org/wiki/Agriculture
https://en.wikipedia.org/wiki/Land_use
"Agriculture includes horticulture, fruit growing, seed growing, dairy farming, the breeding and keeping of livestock (including any creature kept for the production of food, wool, skins or fur), the use of land as grazing land, meadow land, osier land, market gardens and nursery grounds, and the use of woodlands where that use is ancillary to the farming of land for other agricultural purposes."
https://assets.publishing.service.gov.uk/government/uploads/system/uploads/attachment_data/file/11493/144275.pdf
A planned environmental usage process during which an environment facilitates the movement of materials and material objects (persons or goods) from place to place, typically with the assistance of a vehicle.
transportation
usage of an environment for transportation
A planned environmental usage process during which an environment facilitates the movement of materials and material objects (persons or goods) from place to place, typically with the assistance of a vehicle.
https://assets.publishing.service.gov.uk/government/uploads/system/uploads/attachment_data/file/11493/144275.pdf
https://en.wikipedia.org/wiki/Land_use
https://www.eionet.europa.eu/gemet/en/concept/8641
A planned environmental usage process during which an environment supports 1) enterprises concerned with the provision to the public of essentials, such as electricity or water or 2) the basic network or foundation of capital facilities or community investments which are necessary to support economic and community activities.
transportation
usage of an environment for infrastructure and utilities
A planned environmental usage process during which an environment supports 1) enterprises concerned with the provision to the public of essentials, such as electricity or water or 2) the basic network or foundation of capital facilities or community investments which are necessary to support economic and community activities.
https://assets.publishing.service.gov.uk/government/uploads/system/uploads/attachment_data/file/11493/144275.pdf
https://en.wikipedia.org/wiki/Land_use
https://www.eionet.europa.eu/gemet/en/concept/4321
https://www.eionet.europa.eu/gemet/en/concept/6822
A planned environmental usage process during which an environment supports the settlement and dwelling of a community of humans.
residential
This class does not include environments which are primarily used for commerce or industry.
usage of an environment for residential activity
A planned environmental usage process during which an environment supports the settlement and dwelling of a community of humans.
https://assets.publishing.service.gov.uk/government/uploads/system/uploads/attachment_data/file/11493/144275.pdf
https://en.wikipedia.org/wiki/Land_use
https://www.eionet.europa.eu/gemet/en/concept/7143
A planned environmental usage process during which an environment supports manufacturing facilities producing commodities that are sold with the expectation of recovering the total cost of production.
This class includes environments used to support the facilities engaged with a broad variety of manufacturing activities from food and tobacco, to textiles, metals, vehicles, and chemicals.
usage of an environment for industry
A planned environmental usage process during which an environment supports manufacturing facilities producing commodities that are sold with the expectation of recovering the total cost of production.
https://assets.publishing.service.gov.uk/government/uploads/system/uploads/attachment_data/file/11493/144275.pdf
https://en.wikipedia.org/wiki/Land_use
https://www.eionet.europa.eu/gemet/en/concept/4279
A planned environmental usage process during which an environment supports facilities associated with commerce or the earning of a livelihood through means other than manufacturing or the provision of a public service.
This class includes activities carried out in commercial offices, meeting centres, art studios, recording studios, film sets, warehouses, and distribution centres.
usage of an environment for business
A planned environmental usage process during which an environment supports facilities associated with commerce or the earning of a livelihood through means other than manufacturing or the provision of a public service.
https://assets.publishing.service.gov.uk/government/uploads/system/uploads/attachment_data/file/11493/144275.pdf
https://en.wikipedia.org/wiki/Land_use
https://www.eionet.europa.eu/gemet/en/concept/1084
A liquid astronomical body part which is continuous and is delimited by physical discontinuities or non-liquid boundaries.
body of liquid
A part of an astronomical body which is primarily composed of liquid material.
liquid astronomical body part
A part of an astronomical body which is primarily composed of gaseous material.
gaseous astronomical body part
A part of an astronomical body which is primarily composed of fluid.
2018-10-04T13:59:22Z
fluid astronomical body part
A part of an astronomical body which is primarily composed of fluid.
A building which is primarily used for the long-term habitation of humans.
2018-10-04T14:04:49Z
domestic building
A building which is primarily used for the long-term habitation of humans.
https://en.wikipedia.org/wiki/Commercial_building
A surface layer where the solid or liquid material of an astronomical body comes into contact with an atmosphere or outer space.
2018-10-04T16:55:57Z
land surface
a useful class: this can be used to define sub-terrestrial and sub-marine entities
surface of an astronomical body
A vehicle which is able to travel through air in an atmosphere.
2018-10-04T19:28:01Z
aircraft
A vehicle which is able to travel through air in an atmosphere.
https://en.wikipedia.org/wiki/Aircraft
An elevation which is flattened across its highest surface.
2018-10-05T21:12:47Z
flattened elevation
A pollution process during which artificial light with wavelengths in the visible spectrum is released into the environment.
2019-01-09T09:05:35Z
Lichtverschmutzung
This form of pollution is typically the result of urbanisation or similar land use change.
anthropogenic light pollution
Lichtverschmutzung
INTERNAS:WS2
http://www.awi.de/internas
An electromagnetic radiation process during which electromagnetic waves or their quanta are emitted from a manufactured product.
2019-01-09T09:07:24Z
anthropogenic radiation
artificial radiation
radiation from a manufactured product
An electromagnetic radiation process during which electromagnetic waves or their quanta are emitted from a manufactured product.
https://en.wikipedia.org/wiki/Electromagnetic_radiation
https://en.wikipedia.org/wiki/Solar_irradiance
Radiation from a manufactured product during which light between the wavelenghts of 380 nm and 760 nm is emitted.
2019-01-09T09:21:10Z
optical radiation from a manufactured product
visible spectrum radiation from a manufactured product
Radiation from a manufactured product during which light between the wavelenghts of 380 nm and 760 nm is emitted.
A material transformation process during which a material's viscosity increase either through a reduction in temperature, through chemical reactions, or other physical effects.
2019-01-14T18:47:32Z
congelation
congelation process
Sometimes the increase in viscosity is great enough to crystallize or solidify the substance in question.
material congelation process
A material transformation process during which a material's viscosity increase either through a reduction in temperature, through chemical reactions, or other physical effects.
https://en.wikipedia.org/wiki/Congelation
Sometimes the increase in viscosity is great enough to crystallize or solidify the substance in question.
https://en.wikipedia.org/wiki/Congelation
Land which is below the freezing point of water.
2019-01-14T21:18:19Z
http://sweetontology.net/realmCryo/FrozenGround
frozen ground
Perennially and seasonally frozen ground can vary from being partially to extensively frozen depending on the extent of the phase change. It may be described as hard frozen ground, plastic frozen ground, or dry frozen ground, depending on the pore ice and unfrozen water contents and its compressibility under load.
frozen land
Land which is below the freezing point of water.
https://orcid.org/0000-0003-4808-4736
Perennially and seasonally frozen ground can vary from being partially to extensively frozen depending on the extent of the phase change. It may be described as hard frozen ground, plastic frozen ground, or dry frozen ground, depending on the pore ice and unfrozen water contents and its compressibility under load.
https://orcid.org/0000-0003-4808-4736
Soil which is below the freezing point of water.
2019-01-14T21:26:59Z
frozen soil
A material congelation process during which a liquid turns into a solid when its temperature is lowered below its melting point.
2019-01-31T21:13:16Z
freezing
A material congelation process during which a liquid turns into a solid when its temperature is lowered below its melting point.
https://en.wikipedia.org/wiki/Freezing
A freezing process during which liquid water is transformed into water ice.
2019-01-31T21:16:46Z
freezing of water into water ice
A water surface that is part of a water body.
2019-02-27T21:22:13Z
surface layer of a water body
An aggregate of raindrops falling to a planetary surface during a precipitation process.
2019-03-02T13:50:58Z
rain
Rain which is composed of water droplets falling to a planetary surface during a rainfall process.
2019-03-02T13:52:48Z
water-based rain
An ecoregion which is located on a landmass.
2019-03-05T17:40:44Z
https://www.worldwildlife.org/biome-categories/terrestrial-ecoregions
terrestrial ecoregion
A surface layer which is part of an ocean or sea.
2019-03-06T01:22:01Z
At this level, the depth of this layer is ambiguous. Some methods (telemetry) measure only the first few centimeters of the sea or ocean surface. In situ methods often sample the first few meters. Subclasses can be created for such cases.
Sea surface layer is also used to refer to the surfaces of oceans.
sea surface layer
A hydroform which is maintained by a continuous, directed movement of water, generated by disequilibria in a water mass.
2019-03-19T16:31:41Z
Depth contours, shoreline configurations and interaction with other currents influence a current's direction and strength.
water current
A layer which is part of a cryosphere.
2019-04-09T13:05:25Z
cryospheric layer
Permafrost which contains inclusions of water-based ice.
2019-04-09T13:45:40Z
ice-bearing permafrost
A material accumulation process during which the mass of snow on a surface increases.
2019-04-24T18:29:18Z
http://sweetontology.net/phenCryo/Accumulation
This term is used both as a process and as an amount of mass added. Semantically speaking these are two distinct concepts (e.g., accumulation results in accumulation_amount of ice or snow gain), though accumulation_amount would more likely be an attribute.
The scope of this term varies depending on the definition. Some definitions constrain themselves snow or ice added to glaciers; while others also include ice fields, snow cover, and/or floating ice. How to resolve this depends on the scope desired.
Some definitions include additional discussion of the the physics involved which would be useful for connecting glacier ontologies to atmospheric, hydrologic, etc. ontologies. This information should be captured no matter how the inconsistencies above are resolved.
snow accumulation process
A material accumulation process during which the mass of snow on a surface increases.
A material accumulation process during which ice forms in an environmental material or an existing accumulation of ice increases in mass.
2019-04-24T18:48:53Z
http://sweetontology.net/phenCryo/Accumulation
ice accumulation process
A material accumulation process during which ice forms in an environmental material or an existing accumulation of ice increases in mass.
A material accumulation process during which a accumulation of snow and ice forms or increases in mass.
2019-04-24T18:59:45Z
http://sweetontology.net/phenCryo/Accumulation
snow and ice accumulation process
A material accumulation process during which a accumulation of snow and ice forms or increases in mass.
A object which is composed primarily of water-based snow and ice.
2019-04-24T19:08:03Z
http://sweetontology.net/phenCryo/Accumulation
mass of ice and snow
A process during which microscopic solid particulates are formed from liquid materials in an atmosphere.
2019-05-30T21:07:51Z
atmospheric formation of a solid aerosol
formation of a solid aerosol in an atmosphere
formation of a solid aerosol in the atmosphere
formation of solid particles from liquid material in an atmosphere
formation of a solid aerosol from liquid material in an atmosphere
A process during which microscopic solid particulates are formed from liquid materials in an atmosphere.
https://en.wikipedia.org/wiki/Particulates
That part of an atmosphere which is composed of gaseous material.
2019-06-02T07:52:47Z
gaseous part of an atmosphere
A solid material which does not have a regularly organised internal structure.
2019-06-02T11:07:47Z
amorphous solid
An aerosol that is suspended in an atmosphere.
2019-06-03T12:24:09Z
atmospheric aerosol
A material transformation process during which solid or liquid particles form and are suspended in a mass of air, thus creating an aerosol.
2019-06-24T13:43:29Z
aerosol formation process
A surface layer which is composed primarily of some liquid or gas.
2019-08-20T08:28:42Z
fluid surface layer
A surface layer which separates two portions of fluid with respect to either 1) a discontinuity of some fluid property or 2) some derivative of one of these properties in a direction normal to the interface.
2019-07-22T17:29:44Z
fluid interface layer
A surface layer which separates two portions of fluid with respect to either 1) a discontinuity of some fluid property or 2) some derivative of one of these properties in a direction normal to the interface.
A layer which is composed primarily of some fluid.
2019-07-22T17:35:08Z
fluid layer
A fluid interface which separates two fluid masses with differing properties.
2019-07-22T17:43:32Z
fluid front
A fluid interface which separates two fluid masses with differing properties.
A fluid front which is composed primarily of gaseous material and separates at least two gaseous masses.
2019-07-22T17:50:08Z
gaseous front
2
A gaseous front which separates two masses of air with different densities and is a principal cause of meteorological phenomena.
2019-07-22T17:57:21Z
meteorological front
This class refers to Earth's weather fronts. Other forms, not composed of air, are present on other planets and can be created on request. Note: "Since the temperature distribution is the most important regulator of atmospheric density, a front almost invariably separates air masses of different temperature. Along with the basic density criterion and the common temperature criterion, many other features may distinguish a front, such as a pressure trough, a change in wind direction, a moisture discontinuity, and certain characteristic cloud and precipitation forms."
weather front
A gaseous front which separates two masses of air with different densities and is a principal cause of meteorological phenomena.
This class refers to Earth's weather fronts. Other forms, not composed of air, are present on other planets and can be created on request. Note: "Since the temperature distribution is the most important regulator of atmospheric density, a front almost invariably separates air masses of different temperature. Along with the basic density criterion and the common temperature criterion, many other features may distinguish a front, such as a pressure trough, a change in wind direction, a moisture discontinuity, and certain characteristic cloud and precipitation forms."
An object which is composed of a continuous mass of air.
2019-08-20T07:54:32Z
air mass
A fluid surface layer which is composed primarily of some gaseous material.
2019-08-20T08:30:01Z
gaseous surface layer
A layer which separates two portions of environmental material which possess 1) differing compositions, 2) a discontinuity of some property, or 3) some derivative of some property in a direction normal to the interface.
2019-08-20T09:28:10Z
interface layer
An object which is composed primarily of an environmental material
2019-08-20T09:38:29Z
This class and its subclasses refer to objects that are discrete accumulations of environmental materials, generally primarily composed of one or a few main material types.
mass of environmental material
An mass of environmental material which is composed primarily of a solid environmental material
2019-08-20T09:41:27Z
This class and its subclasses refer to objects that are discrete accumulations of environmental materials, generally primarily composed of one or a few main material types.
mass of solid material
An object which is composed primarily of a fluid.
2019-08-20T09:42:35Z
fluid mass
This class and its subclasses refer to objects that are discrete accumulations of environmental materials, generally primarily composed of one or a few main material types.
mass of fluid
An object which is composed primarily of a gas.
2019-08-20T09:44:01Z
gaseous mass
This class and its subclasses refer to objects that are discrete accumulations of environmental materials, generally primarily composed of one or a few main material types.
mass of gas
An object which is composed primarily of a liquid.
2019-08-20T09:45:03Z
liquid mass
This class and its subclasses refer to objects that are discrete accumulations of environmental materials, generally primarily composed of one or a few main material types.
mass of liquid
2
An mass of environmental materials which has appreciable quantities of several individual materials, such that the removal of one would convert the mass into a different entity.
2019-08-20T09:47:10Z
mass of compounded environmental materials
A weather front which separates air masses of tropical and polar origin.
2019-08-20T13:46:42Z
polar front
A weather front which separates air masses of tropical and polar origin.
An environment which is subject to tropical environmental conditions.
2019-08-20T13:58:38Z
tropical environment
An environment which is subject to tropical environmental conditions.
An environment which is subject to subtropical environmental conditions.
2019-08-20T14:50:35Z
subtropical environment
An environment which is subject to subtropical environmental conditions.
An environment which is subject to polar environmental conditions.
2019-08-20T14:53:26Z
polar environment
An environment which is subject to polar environmental conditions.
An environment which is subject to subpolar environmental conditions.
2019-08-20T16:37:32Z
subpolar environment
An environment which is subject to subpolar environmental conditions.
An environment which is subject to temperate environmental conditions.
2019-08-20T16:41:52Z
temperate environment
An environment which is subject to temperate environmental conditions.
An advective transport process during which a fluid moves.
2019-09-05T05:47:26Z
mass fluid flow
A wind storm during which strong gusts of wind occur, transporting atmospheric gas in a linear fashion.
2019-09-05T06:04:47Z
hurricane of the prairie
plough winds
thundergust
straight-line wind
A wind storm during which strong gusts of wind occur, transporting atmospheric gas in a linear fashion.
A process during which the ability of a material entity to maintain its internal organisation fails, resulting in deformation and a breakdown of that organisation.
2019-10-07T10:08:24Z
This is a very general concept, and should likely be elevated to OBO Core rather than held in ENVO.
structural collapse process
A process during which the ability of a material entity to maintain its internal organisation fails, resulting in deformation and a breakdown of that organisation.
An environmental zone which includes those regions of an astronomical body which are not exposed to its atmosphere or space.
2019-10-07T14:22:38Z
subsurface zone of an astronomical body
An ecosystem in which the composition, structure, and function of resident ecological assemblages are primarily determined by a desert.
2019-10-17T08:21:08Z
desert ecosystem
A solid astronomical body part which is part of the landmass of that body.
2019-10-17T08:27:17Z
part of a landmass
A large continuous area of land, either surrounded by sea or contiguous with another landmass.
2019-10-17T08:31:26Z
landmass
A large continuous area of land, either surrounded by sea or contiguous with another landmass.
A part of an astronomical body which is composed of a continuous medium bearing liquid, gaseous, and solid material in variable quantities.
2019-10-17T08:36:00Z
compound astronomical body part
A part of an astronomical body which is composed of a continuous medium bearing liquid, gaseous, and solid material in variable quantities.
https://en.wikipedia.org/wiki/Landform
A surface layer of an astronomical body which is primarily composed of solid material and is not covered by oceans or other bodies of water.
2019-10-21T10:42:26Z
land
A surface layer of an astronomical body which is primarily composed of solid material and is not covered by oceans or other bodies of water.
An ecosystem which has its functions and composition determined by a water body.
2019-10-21T11:05:45Z
aquatic ecosystem
2019-10-21T11:06:11Z
marine ecosystem
An ecosystem which primarily occurs on land.
2019-10-21T11:09:58Z
terrestrial ecosystem
A broadleaf forest which is subject to tropical climate conditions.
2019-10-21T11:38:45Z
tropical broadleaf forest
A broadleaf forest which is subject to subtropical climate conditions.
2019-10-21T11:40:46Z
subtropical broadleaf forest
A broadleaf forest which is subject to temperate climate conditions.
2019-10-21T11:42:38Z
temperate broadleaf forest
An environmental process either driven by or primarily impacting the parts or emergent properties of an ecosystem.
2019-10-21T11:52:55Z
ecosystem process
A mixed forest which is subject to temperate climatic conditions.
2019-10-27T15:52:50Z
temperate mixed forest
A mixed forest which is subject to tropical climatic conditions.
2019-10-27T16:02:01Z
tropical mixed forest
A tropical mixed forest which is in its climactic successional state.
2019-10-27T16:05:39Z
tropical mixed forest biome
A forest ecosystem which is subject to tropical climate conditions.
2019-10-27T16:43:20Z
This class is primarily to be populated by inference.
tropical forest
A forest ecosystem which is subject to subtropical climate conditions.
2019-10-27T16:45:16Z
This class is primarily to be populated by inference.
subtropical forest
A forest ecosystem which is subject to temperate climate conditions.
2019-10-27T16:46:49Z
This class is primarily to be populated by inference.
temperate forest
A grassland ecosystem which is subject to tropical climatic conditions.
2019-10-27T16:58:09Z
tropical grassland
A grassland which is subject to montane environmental conditions.
2019-10-27T17:00:35Z
montane grassland
A grassland which is subject to subtropical climatic conditions.
2019-10-27T17:00:35Z
subtropical grassland
A grassland ecosystem which is subject to temperate environmental conditions.
2019-10-27T17:00:35Z
temperate grassland
A grassland which is subject to subpolar environmental conditions.
2019-10-27T17:00:35Z
subpolar grassland
A material entity which has been assembled through the intentional, instinctual, or deliberately programmed efforts of an organism or machine.
2019-10-29T14:50:34Z
assembled material entity
Constructions differ from manufactured products in that they are the output of individual and tailored projects, rather than repetitive processes.
construction
Constructions differ from manufactured products in that they are the output of individual and tailored projects, rather than repetitive processes.
An object which is formed as a result of one or more biological processes and is composed primarily of organic material.
2019-10-29T15:02:58Z
organic object
An ecosystem process during which the species composition of an ecosystem gradually changes as species which are more adapted to the prevailing conditions in the ecosystem replace those which are less adapted.
2023-09-07T13:10:32Z
ecological succession
An ecosystem process during which the species composition of an ecosystem gradually changes as species which are more adapted to the prevailing conditions in the ecosystem replace those which are less adapted.
An ecological succession process during which 1) organisms in ecological communities possess high adaptation to the conditions in the ecosystem, 2) participant communities largely fill available niches, 3) individual organisms are typically replaced by others of the same species, 4) a near equilibrium is maintained between gross primary production and total respiration and across biogeochemical cycles.
2023-09-07T13:35:09Z
climactic ecological succession
An ecological succession process during which 1) organisms in ecological communities possess high adaptation to the conditions in the ecosystem, 2) participant communities largely fill available niches, 3) individual organisms are typically replaced by others of the same species, 4) a near equilibrium is maintained between gross primary production and total respiration and across biogeochemical cycles.
An ecosystem which is formed as a result of human activity or impact.
2023-09-07T16:56:05Z
anthropised ecosystem
An anthropised ecosystem which is determined by the presence of humans and their constructions.
2023-09-07T16:58:25Z
human settlement
A biome which is subject to tropical climatic conditions.
2019-11-06T15:56:17Z
tropical biome
A biome which is subject to temperate climatic conditions.
2019-11-06T15:57:04Z
temperate biome
A biome which is subject to subtropical climatic conditions.
2019-11-06T15:57:36Z
subtropical biome
A biome which is subject to subpolar climatic conditions.
2019-11-06T15:58:56Z
subpolar biome
A biome which is subject to alpine altitudinal conditions.
2019-11-06T15:59:35Z
alpine biome
A biome which is subject to montane altitudinal conditions.
2019-11-06T16:00:33Z
montane biome
A biome which is subject to arid environmental conditions.
2019-11-06T16:06:47Z
arid biome
A process during which one entity loses energy to another entity.
2020-02-13T13:34:28Z
energy transfer process
A material accumulation process during which the volume of liquid entity increases.
2020-05-18T14:39:20Z
liquid accumulation process
An atmospheric wind which 1) has an increased rate relative to other winds in the same region and 2) is followed by a lull.
2020-05-19T21:47:51Z
gust
According to U.S. weather observing practice, gusts are reported when the peak wind speed reaches at least 16 knots and the variation in wind speed between the peaks and lulls is at least 9 knots. The duration of a gust is usually less than 20 seconds.
wind gust
An atmospheric wind which 1) has an increased rate relative to other winds in the same region and 2) is followed by a lull.
According to U.S. weather observing practice, gusts are reported when the peak wind speed reaches at least 16 knots and the variation in wind speed between the peaks and lulls is at least 9 knots. The duration of a gust is usually less than 20 seconds.
The concentration of carbon dioxide when measured in air that is part of an atmosphere.
2020-05-19T22:51:38Z
concentration of carbon dioxide in an atmosphere
A landform which occurs on the surface of an astronomical body.
2021-05-15T09:16:23Z
geographic feature
The usage of "surface" here aligns with that of planetary surface: in contact with the atmosphere or space. The extent of the "surface" can vary. For rocky planets like Earth, astrogeologists consider the crust as the surface.
surface landform
A solid astronomical body part which has been formed from and is composed primarily of the matter of that astronomical body.
2021-05-15T09:40:37Z
Landforms may be natural or anthropogenic. This term has often has loose usage when referencing entities which are either subterranean or submerged below water bodies. In some cases, oceans themselves are considered landforms. Here, we have provided subclasses to resolve this ambiguity, but place oceans and other water bodies elsewhere.In later revisions, this hiearchy is likely to be reordered based on the formation processes of the entities within it.
landform
A solid astronomical body part which has been formed from and is composed primarily of the matter of that astronomical body.
A desert ecosystem which is subject to temperate environmental conditions.
2024-12-06T12:21:39Z
On Earth, such ecosystems typically comprise ecological communities adapted to intermediate insolation, low rainfall, and large temperature variations between winter and summer. Winter temperatures may fall below 0 degrees Celsius. Some precipitation in this biome may fall as snow.
temperate desert ecosystem