Family,Domain,Seed domains,Full region domains,Rfam ID,Description,RNA type
RF00001,Mixed,"Bacteria (48.6%), Eukaryota (45.51%), Archaea (5.9%)","Eukaryota (87.59%), Bacteria (12.0%), Archaea (0.4%)",5S_rRNA,5S ribosomal RNA,Gene; rRNA;
RF00005,Mixed,"Eukaryota (78.2%), Bacteria (17.3%), Archaea (3.46%), Viruses (1.05%)","Eukaryota (73.83%), Bacteria (25.02%), Archaea (0.95%), Viruses (0.2%)",tRNA,tRNA,Gene; tRNA;
RF00010,Bacteria,"Bacteria (99.78%), Eukaryota (0.22%)","Bacteria (99.34%), Eukaryota (0.63%), Archaea (0.03%)",RNaseP_bact_a,Bacterial RNase P class A,Gene; ribozyme;
RF00011,Bacteria,"Bacteria (96.49%), unclassified sequences (2.63%), Eukaryota (0.88%)","Bacteria (98.82%), Eukaryota (0.79%), unclassified sequences (0.39%)",RNaseP_bact_b,Bacterial RNase P class B,Gene; ribozyme;
RF00013,Bacteria,"Bacteria (96.67%), Eukaryota (2.0%), unclassified sequences (1.33%)","Bacteria (99.3%), Eukaryota (0.7%)",6S,6S / SsrS RNA,Gene;
RF00014,Bacteria,Bacteria (100.0%),"Bacteria (95.0%), Eukaryota (5.0%)",DsrA,DsrA RNA,Gene; sRNA;
RF00018,Bacteria,Bacteria (100.0%),"Bacteria (96.44%), Eukaryota (3.56%)",CsrB,CsrB/RsmB RNA family,Gene; sRNA;
RF00021,Bacteria,Bacteria (100.0%),"Bacteria (96.63%), Eukaryota (3.37%)",Spot_42,Spot 42 RNA,Gene; sRNA;
RF00022,Bacteria,Bacteria (100.0%),"Bacteria (96.58%), Eukaryota (3.42%)",GcvB,GcvB RNA,Gene;
RF00023,Bacteria,"Bacteria (93.92%), unclassified sequences (3.77%), Eukaryota (2.1%), Viruses (0.21%)","Bacteria (98.65%), Eukaryota (0.84%), unclassified sequences (0.28%), Viruses (0.2%), Archaea (0.03%)",tmRNA,transfer-messenger RNA,Gene;
RF00033,Bacteria,Bacteria (100.0%),"Bacteria (97.37%), Eukaryota (2.63%)",MicF,MicF RNA,Gene; antisense;
RF00034,Bacteria,"Bacteria (92.31%), unclassified sequences (7.69%)","Bacteria (94.9%), Eukaryota (4.08%), unclassified sequences (1.02%)",RprA,RprA RNA,Gene; sRNA;
RF00035,Bacteria,Bacteria (100.0%),Bacteria (100.0%),OxyS,OxyS RNA,Gene; sRNA;
RF00038,Bacteria,Bacteria (100.0%),Bacteria (100.0%),PrfA,PrfA thermoregulator UTR,Cis-reg; thermoregulator;
RF00039,Bacteria,Bacteria (100.0%),Bacteria (100.0%),DicF,DicF RNA,Gene; antisense;
RF00040,Bacteria,Bacteria (100.0%),"Bacteria (95.5%), Eukaryota (4.5%)",rne5,RNase E 5' UTR element,Cis-reg;
RF00042,Bacteria/Mixed,"Bacteria (91.89%), Other (8.11%)","Bacteria (87.3%), Eukaryota (7.94%), Other (4.76%)",CopA,CopA-like RNA,Gene; antisense;
RF00043,Mixed/Bacteria,"Bacteria (87.5%), Other (12.5%)","Bacteria (90.91%), Other (9.09%)",Plasmid_R1162,R1162-like plasmid antisense RNA,Gene; antisense;
RF00050,Bacteria,"Bacteria (97.26%), unclassified sequences (2.05%), Other (0.68%)","Bacteria (98.48%), unclassified sequences (0.84%), Eukaryota (0.46%), Archaea (0.19%), Other (0.02%)",FMN,FMN riboswitch (RFN element),Cis-reg; riboswitch;
RF00057,Bacteria,"Bacteria (96.15%), unclassified sequences (3.85%)","Bacteria (96.17%), Eukaryota (3.48%), unclassified sequences (0.35%)",RyhB,RyhB RNA,Gene; sRNA;
RF00059,Mixed/Bacteria,"Bacteria (85.22%), Eukaryota (9.57%), Other (2.61%), Archaea (1.74%), unclassified sequences (0.87%)","Bacteria (96.28%), Eukaryota (3.36%), Archaea (0.34%), Other (0.03%)",TPP,TPP riboswitch (THI element),Cis-reg; riboswitch;
RF00077,Bacteria,Bacteria (100.0%),Bacteria (100.0%),SraB,SraB RNA,Gene; sRNA;
RF00078,Bacteria,Bacteria (100.0%),"Bacteria (95.0%), Eukaryota (5.0%)",MicA,MicA sRNA,Gene; sRNA;
RF00079,Bacteria,"Bacteria (91.3%), unclassified sequences (8.7%)","Bacteria (92.9%), Eukaryota (5.92%), unclassified sequences (1.18%)",OmrA-B,OmrA-B family,Gene; sRNA;
RF00080,Bacteria,"Bacteria (89.66%), unclassified sequences (10.34%)","Bacteria (98.2%), Eukaryota (1.44%), unclassified sequences (0.36%)",yybP-ykoY,yybP-ykoY manganese riboswitch,Cis-reg; riboswitch;
RF00081,Bacteria,Bacteria (100.0%),"Bacteria (95.71%), Eukaryota (4.29%)",ArcZ,ArcZ RNA,Gene; sRNA;
RF00082,Bacteria,Bacteria (100.0%),"Bacteria (95.87%), Eukaryota (4.13%)",SraG,SraG RNA,Gene; sRNA;
RF00083,Bacteria,Bacteria (100.0%),"Bacteria (97.39%), Eukaryota (2.61%)",GlmZ_SraJ,GlmZ RNA activator of glmS mRNA,Gene; sRNA;
RF00084,Bacteria,Bacteria (100.0%),"Bacteria (97.5%), Eukaryota (2.5%)",CsrC,CsrC RNA family,Gene; sRNA;
RF00101,Bacteria,Bacteria (100.0%),"Bacteria (95.88%), Eukaryota (4.12%)",SraC_RyeA,SraC/RyeA RNA,Gene; sRNA;
RF00106,Bacteria/Mixed,Bacteria (100.0%),"Bacteria (52.98%), Eukaryota (46.36%), Viruses (0.66%)",RNAI,RNAI,Gene; antisense;
RF00107,Bacteria/Mixed,Bacteria (100.0%),"Bacteria (88.24%), Eukaryota (11.76%)",FinP,FinP,Gene;
RF00110,Bacteria,"Bacteria (75.0%), unclassified sequences (25.0%)","Bacteria (92.68%), Eukaryota (5.69%), unclassified sequences (1.63%)",RybB,RybB RNA,Gene; sRNA;
RF00111,Bacteria,Bacteria (100.0%),"Bacteria (97.0%), Eukaryota (3.0%)",SdsR_RyeB,SdsR_RyeB RNA,Gene; sRNA;
RF00112,Bacteria,"Bacteria (94.12%), unclassified sequences (5.88%)","Bacteria (98.1%), Eukaryota (0.95%), unclassified sequences (0.95%)",CyaR_RyeE,CyaR/Rye RNA,Gene; sRNA;
RF00113,Bacteria,Bacteria (100.0%),"Bacteria (94.44%), Eukaryota (5.56%)",SIB_RNA,Short Intergenic Abundant RNA,Gene; antitoxin;
RF00114,Bacteria,"Bacteria (93.59%), unclassified sequences (6.41%)","Bacteria (97.95%), Eukaryota (2.05%)",S15,Ribosomal S15 leader,Cis-reg; leader;
RF00115,Bacteria,Bacteria (100.0%),Bacteria (100.0%),McaS,McaS/IsrA RNA,Gene; sRNA;
RF00116,Bacteria,Bacteria (100.0%),Bacteria (100.0%),C0465,C0465 RNA,Gene; sRNA;
RF00117,Bacteria,Bacteria (100.0%),Bacteria (100.0%),C0719,C0719 RNA,Gene; sRNA;
RF00118,Bacteria,Bacteria (100.0%),"Bacteria (94.64%), Eukaryota (5.36%)",rydB,rydB RNA,Gene; sRNA;
RF00119,Bacteria,Bacteria (100.0%),Bacteria (100.0%),C0299,C0299 RNA,Gene; sRNA;
RF00121,Bacteria,"Bacteria (87.5%), unclassified sequences (12.5%)",Bacteria (100.0%),MicC,MicC RNA,Gene; sRNA;
RF00122,Bacteria,Bacteria (100.0%),Bacteria (100.0%),GadY,GadY,Gene; sRNA;
RF00124,Bacteria,Bacteria (100.0%),Bacteria (100.0%),IS102,IS102 RNA,Gene; sRNA;
RF00125,Bacteria,Bacteria (100.0%),Bacteria (100.0%),IS128,IS128 RNA,Gene; sRNA;
RF00126,Bacteria,Bacteria (100.0%),"Bacteria (93.75%), Eukaryota (6.25%)",ryfA,ryfA RNA,Gene; sRNA;
RF00127,Bacteria,Bacteria (100.0%),"Bacteria (99.13%), Eukaryota (0.87%)",t44,t44 RNA,Gene; sRNA;
RF00128,Bacteria,Bacteria (100.0%),"Bacteria (91.87%), Eukaryota (8.13%)",GlmY_tke1,Glm Y RNA activator of glmS mRNA,Gene; sRNA;
RF00140,Bacteria,Bacteria (100.0%),"Bacteria (98.93%), Eukaryota (1.07%)",Alpha_RBS,Alpha operon ribosome binding site,Cis-reg;
RF00162,Bacteria,"Bacteria (97.59%), unclassified sequences (1.31%), Other (1.09%)","Bacteria (99.53%), Eukaryota (0.39%), Other (0.08%)",SAM,SAM riboswitch (S box leader),Cis-reg; riboswitch;
RF00166,Bacteria/Mixed,"Bacteria (94.59%), unclassified sequences (5.41%)","Bacteria (80.15%), Eukaryota (18.32%), unclassified sequences (1.53%)",PrrB_RsmZ,PrrB/RsmZ RNA family,Gene; sRNA;
RF00167,Bacteria,"Bacteria (99.25%), unclassified sequences (0.75%)","Bacteria (98.69%), Other (0.73%), Eukaryota (0.31%), unclassified sequences (0.27%)",Purine,Purine riboswitch,Cis-reg; riboswitch;
RF00168,Bacteria,Bacteria (100.0%),"Bacteria (99.51%), Eukaryota (0.49%)",Lysine,Lysine riboswitch,Cis-reg; riboswitch;
RF00169,Bacteria,Bacteria (100.0%),"Bacteria (99.22%), Eukaryota (0.74%), Archaea (0.04%)",Bacteria_small_SRP,Bacterial small signal recognition particle RNA,Gene;
RF00170,Bacteria,"Bacteria (85.71%), unclassified sequences (14.29%)","Bacteria (93.33%), Eukaryota (6.67%)",msr,Retron msr RNA,Gene;
RF00174,Bacteria,"Bacteria (99.54%), Other (0.23%), unclassified sequences (0.23%)","Bacteria (99.49%), Eukaryota (0.47%), Archaea (0.03%), Other (0.01%), unclassified sequences (0.01%)",Cobalamin,Cobalamin riboswitch,Cis-reg; riboswitch;
RF00177,Bacteria/Mixed,Bacteria (100.0%),"Bacteria (74.1%), Eukaryota (25.82%), Archaea (0.06%), Other (0.01%)",SSU_rRNA_bacteria,Bacterial small subunit ribosomal RNA,Gene; rRNA;
RF00195,Bacteria,"Bacteria (72.73%), unclassified sequences (27.27%)","Bacteria (94.94%), unclassified sequences (3.8%), Eukaryota (1.27%)",RsmY,RsmY RNA family,Gene; sRNA;
RF00230,Bacteria,Bacteria (100.0%),"Bacteria (99.94%), Eukaryota (0.06%)",T-box,T-box leader,Cis-reg; leader;
RF00234,Bacteria,Bacteria (100.0%),Bacteria (100.0%),glmS,glmS glucosamine-6-phosphate activated ribozyme,Cis-reg; riboswitch;
RF00235,Bacteria,Bacteria (100.0%),Bacteria (100.0%),Plasmid_RNAIII,Plasmid RNAIII,Gene;
RF00236,Bacteria,Bacteria (100.0%),Bacteria (100.0%),ctRNA_pGA1,ctRNA,Gene; antisense;
RF00238,Bacteria,Bacteria (100.0%),Bacteria (100.0%),ctRNA_pND324,ctRNA,Gene; antisense;
RF00240,Bacteria/Mixed,Bacteria (100.0%),"Bacteria (56.52%), Eukaryota (43.48%)",RNA-OUT,RNA-OUT,Gene; antisense;
RF00242,Bacteria,Bacteria (100.0%),"Bacteria (93.94%), Eukaryota (6.06%)",ctRNA_pT181,ctRNA,Gene; antisense;
RF00243,Bacteria,Bacteria (100.0%),"Bacteria (92.86%), Eukaryota (7.14%)",traJ_5,traJ 5' UTR,Cis-reg;
RF00368,Bacteria,"Bacteria (93.75%), unclassified sequences (6.25%)","Bacteria (93.02%), Eukaryota (5.81%), unclassified sequences (1.16%)",sroB,sroB RNA,Gene; sRNA;
RF00369,Bacteria,"Bacteria (83.33%), unclassified sequences (16.67%)","Bacteria (94.83%), Eukaryota (5.17%)",sroC,sroC RNA,Gene; sRNA;
RF00370,Bacteria,Bacteria (100.0%),"Bacteria (95.35%), Eukaryota (4.65%)",sroD,sroD RNA,Gene; sRNA;
RF00371,Bacteria,"Bacteria (75.0%), unclassified sequences (25.0%)","Bacteria (92.11%), Eukaryota (5.26%), unclassified sequences (2.63%)",sroE,sroE RNA,Gene; sRNA;
RF00372,Bacteria/Mixed,Bacteria (100.0%),"Bacteria (87.5%), Eukaryota (12.5%)",sroH,sroH RNA,Gene; sRNA;
RF00378,Bacteria,Bacteria (100.0%),Bacteria (100.0%),Qrr,Qrr RNA,Gene; sRNA;
RF00379,Bacteria,"Bacteria (99.06%), unclassified sequences (0.94%)","Bacteria (99.9%), Eukaryota (0.08%), unclassified sequences (0.03%)",ydaO-yuaA,ydaO/yuaA leader,Cis-reg; riboswitch;
RF00380,Bacteria,"Bacteria (97.48%), unclassified sequences (1.89%), Other (0.63%)","Bacteria (99.49%), Eukaryota (0.3%), Other (0.1%), Archaea (0.1%)",M-box,M-box riboswitch (ykoK leader),Cis-reg; riboswitch;
RF00382,Bacteria,Bacteria (100.0%),"Bacteria (96.3%), Eukaryota (3.7%)",DnaX,DnaX ribosomal frameshifting element,Cis-reg; frameshift_element;
RF00383,Bacteria/Mixed,Bacteria (100.0%),"Bacteria (83.0%), Eukaryota (17.0%)",IS1222_FSE,Insertion sequence IS1222 ribosomal frameshifting element,Cis-reg; frameshift_element;
RF00388,Bacteria,Bacteria (100.0%),Bacteria (100.0%),Anti-Q_RNA,Anti-Q RNA,Gene; antisense;
RF00391,Bacteria,"Bacteria (96.49%), unclassified sequences (3.51%)","Bacteria (96.81%), Eukaryota (2.84%), unclassified sequences (0.35%)",RtT,RtT RNA,Cis-reg;
RF00435,Bacteria,Bacteria (100.0%),"Bacteria (98.77%), Eukaryota (1.23%)",ROSE,Repression of heat shock gene expression (ROSE) element,Cis-reg; thermoregulator;
RF00442,Bacteria,"Bacteria (82.0%), unclassified sequences (18.0%)","Bacteria (99.66%), Eukaryota (0.34%)",ykkC-yxkD,Guanidine-I riboswitch,Cis-reg; riboswitch;
RF00444,Bacteria,Bacteria (100.0%),"Bacteria (98.39%), Eukaryota (1.61%)",PrrF,PrrF RNA,Gene; sRNA;
RF00489,Bacteria,Bacteria (100.0%),"Bacteria (98.2%), Eukaryota (1.8%)",ctRNA_p42d,ctRNA,Gene; antisense;
RF00490,Bacteria,Bacteria (100.0%),"Bacteria (98.72%), Eukaryota (1.28%)",S-element,S-element,Cis-reg;
RF00503,Bacteria,Bacteria (100.0%),Bacteria (100.0%),RNAIII,RNAIII,Gene;
RF00504,Bacteria,Bacteria (100.0%),"Bacteria (99.41%), Eukaryota (0.5%), Other (0.07%), Archaea (0.02%)",Glycine,Glycine riboswitch,Cis-reg; riboswitch;
RF00505,Bacteria,Bacteria (100.0%),"Bacteria (95.24%), Eukaryota (4.76%)",RydC,RydC RNA,Gene; sRNA;
RF00506,Bacteria,Bacteria (100.0%),"Bacteria (95.48%), Eukaryota (4.52%)",Thr_leader,Threonine operon leader,Cis-reg; leader;
RF00512,Bacteria,Bacteria (100.0%),"Bacteria (95.76%), Eukaryota (4.24%)",Leu_leader,Leucine operon leader,Cis-reg; leader;
RF00513,Bacteria,Bacteria (100.0%),"Bacteria (96.79%), Eukaryota (3.21%)",Trp_leader,Tryptophan operon leader,Cis-reg; leader;
RF00514,Bacteria,Bacteria (100.0%),"Bacteria (97.24%), Eukaryota (2.76%)",His_leader,Histidine operon leader,Cis-reg; leader;
RF00515,Bacteria,Bacteria (100.0%),"Bacteria (99.75%), Eukaryota (0.25%)",PyrR,PyrR binding site,Cis-reg;
RF00516,Bacteria,Bacteria (100.0%),"Bacteria (99.58%), Eukaryota (0.42%)",ylbH,ylbH leader,Cis-reg; leader;
RF00517,Bacteria,"unclassified sequences (52.86%), Bacteria (47.14%)","Bacteria (93.62%), unclassified sequences (5.9%), Eukaryota (0.32%), Archaea (0.16%)",serC,serC leader,Cis-reg; leader;
RF00518,Bacteria,Bacteria (100.0%),"Bacteria (99.12%), Eukaryota (0.88%)",speF,speF leader,Cis-reg; leader;
RF00519,Bacteria,Bacteria (100.0%),"Bacteria (99.17%), Eukaryota (0.83%)",suhB,Makes More Granules Regulator RNA (mmgR),Gene; sRNA;
RF00520,Bacteria,Bacteria (100.0%),"Bacteria (98.85%), Eukaryota (1.15%)",ybhL,ybhL leader,Cis-reg; leader;
RF00521,Bacteria,Bacteria (100.0%),"Bacteria (99.76%), Eukaryota (0.24%)",SAM_alpha,SAM riboswitch (alpha-proteobacteria),Cis-reg; riboswitch;
RF00522,Bacteria,"Bacteria (97.22%), Other (2.78%)",Bacteria (100.0%),PreQ1,PreQ1 riboswitch,Cis-reg; riboswitch;
RF00534,Bacteria,Bacteria (100.0%),"Bacteria (96.49%), Eukaryota (3.51%)",SgrS,SgrS RNA,Gene; antisense;
RF00552,Bacteria,Bacteria (100.0%),"Bacteria (95.62%), Eukaryota (4.38%)",rncO,rncO,Cis-reg;
RF00555,Bacteria,Bacteria (100.0%),Bacteria (100.0%),L13_leader,Ribosomal protein L13 leader,Cis-reg; leader;
RF00556,Bacteria,Bacteria (100.0%),Bacteria (100.0%),L19_leader,Ribosomal protein L19 leader,Cis-reg; leader;
RF00557,Bacteria,Bacteria (100.0%),"Bacteria (99.82%), Eukaryota (0.18%)",L10_leader,Ribosomal protein L10 leader,Cis-reg; leader;
RF00558,Bacteria,Bacteria (100.0%),Bacteria (100.0%),L20_leader,Ribosomal protein L20 leader,Cis-reg; leader;
RF00559,Bacteria,Bacteria (100.0%),"Bacteria (99.85%), Eukaryota (0.15%)",L21_leader,Ribosomal protein L21 leader,Cis-reg; leader;
RF00615,Bacteria,Bacteria (100.0%),Bacteria (100.0%),LhrA,Listeria Hfq binding LhrA,Gene; sRNA;
RF00616,Bacteria,Bacteria (100.0%),Bacteria (100.0%),LhrC,Listeria LhrC,Gene; sRNA;
RF00623,Bacteria,"Bacteria (92.86%), unclassified sequences (7.14%)","Bacteria (97.1%), Eukaryota (1.45%), unclassified sequences (1.45%)",P1,Pseudomonas sRNA P1,Gene;
RF00624,Bacteria,Bacteria (100.0%),"Bacteria (99.29%), Eukaryota (0.71%)",P9,Pseudomonas sRNA P9,Gene;
RF00625,Bacteria,"Bacteria (93.33%), unclassified sequences (6.67%)","Bacteria (98.21%), unclassified sequences (1.79%)",P11,Pseudomonas sRNA P11,Gene;
RF00627,Bacteria,"Bacteria (95.45%), unclassified sequences (4.55%)","Bacteria (97.73%), Eukaryota (1.14%), unclassified sequences (1.14%)",P15,Pseudomonas sRNA P15,Gene;
RF00628,Bacteria,"Bacteria (85.19%), unclassified sequences (14.81%)","Bacteria (98.57%), Eukaryota (1.43%)",RgsA,RgsA sRNA,Gene; sRNA;
RF00629,Bacteria,"Bacteria (85.71%), unclassified sequences (14.29%)","Bacteria (96.72%), Eukaryota (3.28%)",P24,Pseudomonas sRNA P24,Gene;
RF00630,Bacteria,"Bacteria (92.59%), unclassified sequences (7.41%)","Bacteria (97.48%), Eukaryota (1.96%), unclassified sequences (0.56%)",P26,Pseudomonas sRNA P26,Gene;
RF00632,Bacteria,Bacteria (100.0%),Bacteria (100.0%),sxy,sxy 5' UTR element,Cis-reg;
RF00634,Bacteria,"Bacteria (95.0%), unclassified sequences (5.0%)","Bacteria (99.84%), unclassified sequences (0.16%)",SAM-IV,"S-adenosyl methionine (SAM) riboswitch,",Cis-reg; riboswitch;
RF01051,Bacteria,"Bacteria (97.42%), unclassified sequences (1.94%), Viruses (0.65%)","Bacteria (98.08%), unclassified sequences (1.63%), Other (0.12%), Viruses (0.1%), Eukaryota (0.07%)",c-di-GMP-I,Cyclic di-GMP-I riboswitch,Cis-reg;
RF01053,Bacteria,Bacteria (100.0%),Bacteria (100.0%),Deinococcus_Y_RNA,Deinococcus radiodurans Y RNA,Gene;
RF01054,Bacteria,"Bacteria (93.33%), Other (6.67%)","Bacteria (93.55%), unclassified sequences (3.23%), Eukaryota (1.61%), Other (1.61%)",preQ1-II,preQ1-II (pre queuosine) riboswitch,Cis-reg; riboswitch;
RF01055,Bacteria,"Bacteria (99.38%), unclassified sequences (0.63%)","Bacteria (98.2%), unclassified sequences (1.33%), Eukaryota (0.47%)",MOCO_RNA_motif,Moco (molybdenum cofactor) riboswitch,Cis-reg; riboswitch;
RF01056,Bacteria,Bacteria (100.0%),"Bacteria (92.86%), Eukaryota (7.14%)",Mg_sensor,Magnesium Sensor,Cis-reg; riboswitch;
RF01057,Bacteria,"Bacteria (78.85%), unclassified sequences (21.15%)","Bacteria (97.79%), unclassified sequences (1.28%), Eukaryota (0.93%)",SAH_riboswitch,S-adenosyl-L-homocysteine riboswitch,Cis-reg; riboswitch;
RF01065,Bacteria,Bacteria (100.0%),Bacteria (100.0%),23S-methyl,23S methyl RNA motif,Cis-reg;
RF01066,Bacteria,Bacteria (100.0%),Bacteria (100.0%),6C,6C RNA,Cis-reg;
RF01067,Bacteria,"unclassified sequences (77.78%), Bacteria (22.22%)","unclassified sequences (66.67%), Bacteria (33.33%)",ATPC,ATPC RNA motif,Gene;
RF01068,Bacteria/Mixed,"Bacteria (98.61%), unclassified sequences (1.39%)","Bacteria (89.11%), Eukaryota (10.49%), Archaea (0.3%), unclassified sequences (0.1%)",mini-ykkC,Guanidine-II riboswitch,Cis-reg;
RF01069,Bacteria,"Bacteria (85.71%), unclassified sequences (14.29%)","Bacteria (96.04%), unclassified sequences (2.97%), Eukaryota (0.99%)",purD,purD RNA motif,Cis-reg;
RF01070,Bacteria,"Bacteria (74.29%), unclassified sequences (25.71%)","Bacteria (95.77%), unclassified sequences (3.17%), Eukaryota (1.06%)",sucA,SucA RNA motif,Cis-reg;
RF01071,Bacteria,"Bacteria (95.0%), unclassified sequences (5.0%)","Bacteria (99.66%), unclassified sequences (0.34%)",OLE,Ornate Large Extremophilic RNA,Gene;
RF01089,Bacteria/Mixed,Bacteria (100.0%),"Bacteria (82.05%), Eukaryota (17.95%)",PK-repBA,Pseudoknot of the regulatory region of the repBA gene,Cis-reg;
RF01116,Bacteria,"Bacteria (72.97%), unclassified sequences (27.03%)","Bacteria (93.63%), unclassified sequences (6.37%)",Yfr1,Cyanobacterial functional RNA 1,Gene; sRNA;
RF01315,Bacteria,Bacteria (100.0%),"Bacteria (99.99%), Eukaryota (0.01%)",CRISPR-DR2,CRISPR RNA direct repeat element,Gene; CRISPR;
RF01316,Bacteria,Bacteria (100.0%),Bacteria (100.0%),CRISPR-DR3,CRISPR RNA direct repeat element,Gene; CRISPR;
RF01317,Bacteria,"Bacteria (96.97%), unclassified sequences (3.03%)","Bacteria (98.19%), Eukaryota (1.8%), unclassified sequences (0.01%)",CRISPR-DR4,CRISPR RNA direct repeat element,Gene; CRISPR;
RF01318,Bacteria,"Bacteria (91.67%), unclassified sequences (8.33%)","Bacteria (99.98%), unclassified sequences (0.02%)",CRISPR-DR5,CRISPR RNA direct repeat element,Gene; CRISPR;
RF01321,Bacteria,Bacteria (100.0%),Bacteria (100.0%),CRISPR-DR8,CRISPR RNA direct repeat element,Gene; CRISPR;
RF01322,Bacteria,Bacteria (100.0%),"Bacteria (94.74%), Archaea (5.26%)",CRISPR-DR9,CRISPR RNA direct repeat element,Gene; CRISPR;
RF01323,Bacteria,Bacteria (100.0%),Bacteria (100.0%),CRISPR-DR10,CRISPR RNA direct repeat element,Gene; CRISPR;
RF01325,Bacteria,Bacteria (100.0%),Bacteria (100.0%),CRISPR-DR12,CRISPR RNA direct repeat element,Gene; CRISPR;
RF01327,Bacteria,Bacteria (100.0%),Bacteria (100.0%),CRISPR-DR14,CRISPR RNA direct repeat element,Gene; CRISPR;
RF01329,Bacteria,Bacteria (100.0%),Bacteria (100.0%),CRISPR-DR15,CRISPR RNA direct repeat element,Gene; CRISPR;
RF01330,Bacteria,Bacteria (100.0%),Bacteria (100.0%),CRISPR-DR16,CRISPR RNA direct repeat element,Gene; CRISPR;
RF01331,Bacteria,Bacteria (100.0%),Bacteria (100.0%),CRISPR-DR18,CRISPR RNA direct repeat element,Gene; CRISPR;
RF01332,Bacteria,Bacteria (100.0%),Bacteria (100.0%),CRISPR-DR19,CRISPR RNA direct repeat element,Gene; CRISPR;
RF01333,Bacteria,Bacteria (100.0%),Bacteria (100.0%),CRISPR-DR20,CRISPR RNA direct repeat element,Gene; CRISPR;
RF01334,Bacteria,Bacteria (100.0%),Bacteria (100.0%),CRISPR-DR21,CRISPR RNA direct repeat element,Gene; CRISPR;
RF01335,Bacteria,Bacteria (100.0%),Bacteria (100.0%),CRISPR-DR22,CRISPR RNA direct repeat element,Gene; CRISPR;
RF01336,Bacteria,Bacteria (100.0%),Bacteria (100.0%),CRISPR-DR23,CRISPR RNA direct repeat element,Gene; CRISPR;
RF01340,Bacteria,Bacteria (100.0%),Bacteria (100.0%),CRISPR-DR29,CRISPR RNA direct repeat element,Gene; CRISPR;
RF01341,Bacteria,Bacteria (100.0%),Bacteria (100.0%),CRISPR-DR30,CRISPR RNA direct repeat element,Gene; CRISPR;
RF01342,Bacteria,Bacteria (100.0%),Bacteria (100.0%),CRISPR-DR32,CRISPR RNA direct repeat element,Gene; CRISPR;
RF01343,Bacteria,Bacteria (100.0%),Bacteria (100.0%),CRISPR-DR33,CRISPR RNA direct repeat element,Gene; CRISPR;
RF01344,Bacteria,Bacteria (100.0%),"Bacteria (99.21%), Eukaryota (0.79%)",CRISPR-DR34,CRISPR RNA direct repeat element,Gene; CRISPR;
RF01345,Bacteria,Bacteria (100.0%),Bacteria (100.0%),CRISPR-DR35,CRISPR RNA direct repeat element,Gene; CRISPR;
RF01346,Bacteria,Bacteria (100.0%),Bacteria (100.0%),CRISPR-DR36,CRISPR RNA direct repeat element,Gene; CRISPR;
RF01347,Bacteria,Bacteria (100.0%),Bacteria (100.0%),CRISPR-DR37,CRISPR RNA direct repeat element,Gene; CRISPR;
RF01348,Bacteria,Bacteria (100.0%),Bacteria (100.0%),CRISPR-DR38,CRISPR RNA direct repeat element,Gene; CRISPR;
RF01349,Bacteria,Bacteria (100.0%),Bacteria (100.0%),CRISPR-DR40,CRISPR RNA direct repeat element,Gene; CRISPR;
RF01352,Bacteria,Bacteria (100.0%),Bacteria (100.0%),CRISPR-DR43,CRISPR RNA direct repeat element,Gene; CRISPR;
RF01356,Bacteria,Bacteria (100.0%),Bacteria (100.0%),CRISPR-DR28,CRISPR RNA direct repeat element,Gene; CRISPR;
RF01357,Bacteria/Mixed,Bacteria (100.0%),"Bacteria (81.82%), Eukaryota (18.18%)",CRISPR-DR31,CRISPR RNA direct repeat element,Gene; CRISPR;
RF01359,Bacteria,Bacteria (100.0%),Bacteria (100.0%),CRISPR-DR46,CRISPR RNA direct repeat element,Gene; CRISPR;
RF01361,Bacteria,Bacteria (100.0%),Bacteria (100.0%),CRISPR-DR48,CRISPR RNA direct repeat element,Gene; CRISPR;
RF01362,Bacteria,Bacteria (100.0%),"Bacteria (99.08%), Eukaryota (0.92%)",CRISPR-DR49,CRISPR RNA direct repeat element,Gene; CRISPR;
RF01363,Bacteria,Bacteria (100.0%),Bacteria (100.0%),CRISPR-DR50,CRISPR RNA direct repeat element,Gene; CRISPR;
RF01364,Bacteria,Bacteria (100.0%),Bacteria (100.0%),CRISPR-DR51,CRISPR RNA direct repeat element,Gene; CRISPR;
RF01365,Bacteria,Bacteria (100.0%),Bacteria (100.0%),CRISPR-DR52,CRISPR RNA direct repeat element,Gene; CRISPR;
RF01366,Bacteria,Bacteria (100.0%),Bacteria (100.0%),CRISPR-DR53,CRISPR RNA direct repeat element,Gene; CRISPR;
RF01367,Bacteria,Bacteria (100.0%),"Bacteria (95.65%), Eukaryota (4.35%)",CRISPR-DR54,CRISPR RNA direct repeat element,Gene; CRISPR;
RF01368,Bacteria,Bacteria (100.0%),Bacteria (100.0%),CRISPR-DR55,CRISPR RNA direct repeat element,Gene; CRISPR;
RF01370,Bacteria,Bacteria (100.0%),Bacteria (100.0%),CRISPR-DR57,CRISPR RNA direct repeat element,Gene; CRISPR;
RF01371,Bacteria,Bacteria (100.0%),Bacteria (100.0%),CRISPR-DR58,CRISPR RNA direct repeat element,Gene; CRISPR;
RF01374,Bacteria/Mixed,Bacteria (100.0%),"Bacteria (75.0%), Eukaryota (25.0%)",CRISPR-DR61,CRISPR RNA direct repeat element,Gene; CRISPR;
RF01376,Bacteria,Bacteria (100.0%),"Bacteria (92.11%), Eukaryota (7.89%)",CRISPR-DR63,CRISPR RNA direct repeat element,Gene; CRISPR;
RF01379,Bacteria,"unclassified sequences (50.0%), Bacteria (50.0%)","Bacteria (98.44%), unclassified sequences (1.56%)",CRISPR-DR66,CRISPR RNA direct repeat element,Gene; CRISPR;
RF01384,Bacteria,Bacteria (100.0%),Bacteria (100.0%),InvR,Invasion gene-associated RNA,Gene;
RF01385,Bacteria,Bacteria (100.0%),Bacteria (100.0%),isrA,isrA Hfq binding RNA,Gene; sRNA;
RF01386,Bacteria/Mixed,Bacteria (100.0%),"Bacteria (80.0%), Viruses (20.0%)",isrB,isrB Hfq binding RNA,Gene; sRNA;
RF01387,Bacteria,"Bacteria (93.75%), unclassified sequences (6.25%)","Bacteria (93.55%), Eukaryota (3.23%), unclassified sequences (3.23%)",isrC,isrC Hfq binding RNA,Gene; sRNA;
RF01388,Bacteria,Bacteria (100.0%),Bacteria (100.0%),isrD,isrD Hfq binding RNA,Gene; sRNA;
RF01389,Bacteria,Bacteria (100.0%),Bacteria (100.0%),isrF,isrF Hfq binding RNA,Gene; sRNA;
RF01390,Bacteria/Eukaryota,Bacteria (100.0%),"Eukaryota (91.04%), Bacteria (8.96%)",isrG,isrG Hfq binding RNA,Gene; sRNA;
RF01391,Bacteria,Bacteria (100.0%),Bacteria (100.0%),isrH,isrH Hfq binding RNA,Gene; sRNA;
RF01392,Bacteria,Bacteria (100.0%),Bacteria (100.0%),isrI,isrI Hfq binding RNA,Gene; sRNA;
RF01393,Bacteria,Bacteria (100.0%),Bacteria (100.0%),isrJ,isrJ Hfq binding RNA,Gene; sRNA;
RF01394,Bacteria/Mixed,Bacteria (100.0%),"Bacteria (88.76%), Viruses (6.88%), Eukaryota (4.36%)",isrK,isrK Hfq binding RNA,Gene; sRNA;
RF01395,Bacteria/Mixed,"Bacteria (75.0%), unclassified sequences (25.0%)","Bacteria (85.0%), Eukaryota (10.0%), unclassified sequences (5.0%)",isrL,isrL Hfq binding RNA,Gene; sRNA;
RF01396,Bacteria,Bacteria (100.0%),"Bacteria (91.43%), Eukaryota (8.57%)",isrN,isrN Hfq binding RNA,Gene; sRNA;
RF01397,Bacteria,Bacteria (100.0%),Bacteria (100.0%),isrO,isrO Hfq binding RNA,Gene; sRNA;
RF01398,Bacteria,Bacteria (100.0%),Bacteria (100.0%),isrP,isrP Hfq binding RNA,Gene; sRNA;
RF01399,Bacteria,Bacteria (100.0%),Bacteria (100.0%),isrQ,isrQ Hfq binding RNA,Gene; sRNA;
RF01400,Bacteria,Bacteria (100.0%),"Bacteria (92.31%), Eukaryota (7.69%)",istR,istR Hfq binding RNA,Gene; antitoxin;
RF01401,Bacteria,Bacteria (100.0%),Bacteria (100.0%),rseX,rseX Hfq binding RNA,Gene; sRNA;
RF01402,Bacteria,Bacteria (100.0%),Bacteria (100.0%),STnc150,STnc150 Hfq binding RNA,Gene; sRNA;
RF01403,Bacteria,Bacteria (100.0%),Bacteria (100.0%),STnc290,STnc290 Hfq binding RNA,Gene; sRNA;
RF01404,Bacteria,Bacteria (100.0%),Bacteria (100.0%),PinT,PinT (STnc440) Hfq binding RNA,Gene; sRNA;
RF01405,Bacteria,Bacteria (100.0%),"Bacteria (99.62%), Eukaryota (0.38%)",STnc490,STnc490 Hfq binding RNA,Gene; sRNA;
RF01406,Bacteria,Bacteria (100.0%),Bacteria (100.0%),STnc500,STnc500 Hfq binding RNA,Gene; sRNA;
RF01407,Bacteria,Bacteria (100.0%),Bacteria (100.0%),STnc560,STnc560 Hfq binding RNA,Gene; sRNA;
RF01408,Bacteria,Bacteria (100.0%),"Bacteria (91.84%), Eukaryota (8.16%)",sraL,sraL Hfq binding RNA,Gene; sRNA;
RF01409,Bacteria,Bacteria (100.0%),Bacteria (100.0%),STnc250,STnc250 Hfq binding RNA,Gene; sRNA;
RF01410,Bacteria,Bacteria (100.0%),Bacteria (100.0%),BsrC,BsrC,Gene; sRNA;
RF01411,Bacteria,Bacteria (100.0%),Bacteria (100.0%),BsrF,BsrF,Gene; sRNA;
RF01412,Bacteria,Bacteria (100.0%),"Bacteria (95.68%), Viruses (3.32%), Eukaryota (1.0%)",BsrG,BsrG,Gene; sRNA;
RF01416,Bacteria,Bacteria (100.0%),Bacteria (100.0%),NrrF,NrrF RNA,Gene; antisense;
RF01456,Bacteria,Bacteria (100.0%),Bacteria (100.0%),VrrA,Vibrio regulatory RNA of OmpA,Gene; antisense;
RF01457,Bacteria,Bacteria (100.0%),Bacteria (100.0%),rli22,Listeria sRNA rli22,Gene; sRNA;
RF01458,Bacteria,Bacteria (100.0%),"Bacteria (98.08%), Viruses (1.92%)",rli23,Listeria snRNA rli23,Gene; antisense;
RF01459,Bacteria,Bacteria (100.0%),Bacteria (100.0%),rliE,Listeria sRNA rliE,Gene; sRNA;
RF01460,Bacteria,Bacteria (100.0%),Bacteria (100.0%),rliH,Listeria sRNA rliH,Gene; sRNA;
RF01461,Bacteria,Bacteria (100.0%),Bacteria (100.0%),rli24,Listeria sRNA rli22,Gene; sRNA;
RF01462,Bacteria,Bacteria (100.0%),Bacteria (100.0%),rli26,Listeria sRNA rli26,Gene; sRNA;
RF01463,Bacteria,Bacteria (100.0%),Bacteria (100.0%),rli27,Listeria sRNA rli27,Gene; sRNA;
RF01464,Bacteria,Bacteria (100.0%),Bacteria (100.0%),rliA,Listeria sRNA rliA,Gene; sRNA;
RF01465,Bacteria,Bacteria (100.0%),Bacteria (100.0%),rli31,Listeria sRNA rli31,Gene; sRNA;
RF01466,Bacteria/Mixed,Bacteria (100.0%),"Bacteria (87.5%), Viruses (12.5%)",rli34,Listeria sRNA rli34,Gene; sRNA;
RF01467,Bacteria,Bacteria (100.0%),Bacteria (100.0%),rli36,Listeria sRNA rli36,Gene; sRNA;
RF01468,Bacteria,Bacteria (100.0%),Bacteria (100.0%),rli32,Listeria sRNA rli32,Gene; sRNA;
RF01469,Bacteria/Mixed,Bacteria (100.0%),"Bacteria (66.67%), Eukaryota (33.33%)",rli33,Listeria sRNA rli33,Gene; sRNA;
RF01470,Bacteria,Bacteria (100.0%),"Bacteria (99.0%), Eukaryota (1.0%)",rli38,Listeria sRNA rli38,Gene; sRNA;
RF01471,Bacteria,Bacteria (100.0%),Bacteria (100.0%),rliB,Listeria sRNA rliB,Gene; sRNA;
RF01472,Bacteria,Bacteria (100.0%),Bacteria (100.0%),rli40,Listeria sRNA rli40,Gene; sRNA;
RF01473,Bacteria,Bacteria (100.0%),Bacteria (100.0%),rli41,Listeria sRNA rli41,Gene; sRNA;
RF01474,Bacteria,Bacteria (100.0%),Bacteria (100.0%),rli42,Listeia sRNA rli42,Gene; sRNA;
RF01475,Bacteria,Bacteria (100.0%),Bacteria (100.0%),rli45,Listeria snRNA rli45,Gene; antisense;
RF01476,Bacteria,Bacteria (100.0%),Bacteria (100.0%),rliF,Listeria sRNA rliF,Gene; sRNA;
RF01477,Bacteria,Bacteria (100.0%),Bacteria (100.0%),rli43,Listeria sRNA rli43,Gene; sRNA;
RF01478,Bacteria,Bacteria (100.0%),Bacteria (100.0%),rli47,Listeria sRNA rli47,Gene; sRNA;
RF01479,Bacteria/Mixed,Bacteria (100.0%),"Bacteria (57.14%), Viruses (42.86%)",rli48,Listeria sRNA rli48,Gene; sRNA;
RF01480,Bacteria,Bacteria (100.0%),Bacteria (100.0%),rli52,Listeria sRNA rli52,Cis-reg;
RF01481,Bacteria,Bacteria (100.0%),Bacteria (100.0%),rli53,Listeria sRNA rli53,Cis-reg;
RF01482,Bacteria,Bacteria (100.0%),Bacteria (100.0%),AdoCbl_riboswitch,AdoCbl riboswitch,Cis-reg; riboswitch;
RF01483,Bacteria,Bacteria (100.0%),Bacteria (100.0%),rli56,Listeria sRNA rli56,Cis-reg;
RF01484,Bacteria,Bacteria (100.0%),Bacteria (100.0%),rli59,Listeria sRNA rli59,Cis-reg;
RF01485,Bacteria,Bacteria (100.0%),Bacteria (100.0%),rli61,Listeria sRNA rli61,Cis-reg;
RF01486,Bacteria/Mixed,Bacteria (100.0%),"Viruses (57.14%), Bacteria (42.86%)",rli62,Listeria sRNA rli62,Cis-reg;
RF01487,Bacteria/Mixed,Bacteria (100.0%),"Bacteria (75.0%), Eukaryota (25.0%)",rliI,Listeria sRNA rliI,Gene; sRNA;
RF01488,Bacteria,Bacteria (100.0%),Bacteria (100.0%),rli49,Listeria sRNA rli49,Gene; sRNA;
RF01489,Bacteria,Bacteria (100.0%),Bacteria (100.0%),sbrA,Listeria sRNA sbrA,Gene; sRNA;
RF01490,Bacteria/Mixed,Bacteria (100.0%),"Bacteria (83.33%), Eukaryota (16.67%)",rli51,Listeria snRNA rli51,Cis-reg;
RF01491,Bacteria,Bacteria (100.0%),Bacteria (100.0%),rli54,Listeria sRNA rli54,Cis-reg;
RF01492,Bacteria,Bacteria (100.0%),"Bacteria (96.89%), Viruses (2.39%), Eukaryota (0.72%)",rli28,Listeria sRNA rli28,Gene; sRNA;
RF01493,Bacteria,Bacteria (100.0%),Bacteria (100.0%),rli37,Listeria sRNA rli37,Gene; sRNA;
RF01494,Bacteria,Bacteria (100.0%),"Bacteria (98.97%), Eukaryota (1.03%)",rliD,Listeria sRNA rliD,Gene; antisense;
RF01497,Bacteria,Bacteria (100.0%),"Bacteria (97.46%), Eukaryota (1.98%), Viruses (0.57%)",ALIL,ALIL pseudoknot,Cis-reg;
RF01510,Bacteria,Bacteria (100.0%),Bacteria (100.0%),MFR,M. florum riboswitch,Cis-reg; riboswitch;
RF01517,Bacteria,Bacteria (100.0%),"Bacteria (97.5%), Eukaryota (2.5%)",iscRS,iscR stability element,Cis-reg;
RF01519,Bacteria,Bacteria (100.0%),Bacteria (100.0%),CC0196,Caulobacter sRNA CC0196,Gene; sRNA;
RF01520,Bacteria,Bacteria (100.0%),Bacteria (100.0%),CC0734,caulobacter sRNA CC0734,Gene; sRNA;
RF01521,Bacteria,Bacteria (100.0%),Bacteria (100.0%),CC1840,caulobacter sRNA CC1840,Gene; sRNA;
RF01527,Bacteria,Bacteria (100.0%),"Bacteria (97.14%), Eukaryota (2.86%)",CrfA,Caulobacter sRNA CrfA,Gene; sRNA;
RF01528,Bacteria,Bacteria (100.0%),Bacteria (100.0%),CC3513,caulobacter sRNA CC3513,Gene; sRNA;
RF01529,Bacteria,Bacteria (100.0%),"Bacteria (96.43%), Eukaryota (3.57%)",CC3552,Cauldobacter sRNA CC3552,Gene; sRNA;
RF01530,Bacteria,Bacteria (100.0%),Bacteria (100.0%),CC3664,Caulobacter sRNA CC3664,Gene; sRNA;
RF01665,Bacteria,Bacteria (100.0%),Bacteria (100.0%),P13,Pseudomonas sRNA P13,Gene; sRNA;
RF01668,Bacteria,Bacteria (100.0%),"Bacteria (96.34%), Eukaryota (2.44%), Viruses (1.22%)",P10,Pseudomonas sRNA P10,Gene; sRNA;
RF01669,Bacteria,Bacteria (100.0%),"Bacteria (97.06%), Eukaryota (2.94%)",P14,Pseudomonas sRNA P14,Gene; sRNA;
RF01670,Bacteria,Bacteria (100.0%),"Bacteria (90.0%), Eukaryota (10.0%)",P17,Pseudomonas sRNA P17,Gene; sRNA;
RF01671,Bacteria,Bacteria (100.0%),Bacteria (100.0%),P18,Pseudomonas sRNA P18,Gene; sRNA;
RF01672,Bacteria,Bacteria (100.0%),Bacteria (100.0%),P2,Psudomonas sRNA P2,Gene; sRNA;
RF01673,Bacteria,Bacteria (100.0%),"Bacteria (96.49%), Eukaryota (3.51%)",PhrS,PhrS,Gene; sRNA;
RF01674,Bacteria,Bacteria (100.0%),"Bacteria (97.53%), Eukaryota (2.47%)",P27,Pseudomonas sRNA P27,Gene; sRNA;
RF01675,Bacteria,"Bacteria (94.74%), unclassified sequences (5.26%)","Bacteria (97.62%), Eukaryota (1.79%), unclassified sequences (0.6%)",CrcZ,Pseudomonas sRNA CrcZ,Gene; sRNA;
RF01676,Bacteria,Bacteria (100.0%),"Bacteria (98.72%), Eukaryota (1.28%)",P31,Pseudomonas sRNA P31,Gene; sRNA;
RF01677,Bacteria,Bacteria (100.0%),Bacteria (100.0%),P35,Pseudomonas sRNA P35,Gene; sRNA;
RF01678,Bacteria,Bacteria (100.0%),Bacteria (100.0%),P37,Pseudomonas sRNA P37,Gene; sRNA;
RF01679,Bacteria/Mixed,Bacteria (100.0%),"Bacteria (89.74%), Eukaryota (10.26%)",P36,Pseudomonas sRNA P36,Gene; sRNA;
RF01680,Bacteria,Bacteria (100.0%),Bacteria (100.0%),P5,Pseudomonas sRNA P5,Gene; sRNA;
RF01681,Bacteria/Mixed,Bacteria (100.0%),"Bacteria (62.5%), Eukaryota (37.5%)",P4,Pseudomonas sRNA P4,Gene; sRNA;
RF01682,Bacteria,Bacteria (100.0%),Bacteria (100.0%),P8,Pseudomonas sRNA P8,Gene; sRNA;
RF01683,Bacteria,Bacteria (100.0%),Bacteria (100.0%),P6,Pseudomonas sRNA P6,Gene; sRNA;
RF01685,Bacteria,"unclassified sequences (86.59%), Bacteria (13.41%)","Bacteria (69.13%), unclassified sequences (30.87%)",6S-Flavo,6S-Flavo RNA,Gene; sRNA;
RF01686,Bacteria,Bacteria (100.0%),Bacteria (100.0%),Acido-1,Acido-1 RNA,Gene; sRNA;
RF01687,Bacteria,"Bacteria (80.46%), unclassified sequences (19.54%)","Bacteria (98.94%), unclassified sequences (0.86%), Eukaryota (0.2%)",Acido-Lenti-1,Acido-Lenti-1 RNA,Gene; sRNA;
RF01688,Bacteria,"unclassified sequences (62.34%), Bacteria (37.66%)","Bacteria (93.63%), unclassified sequences (6.22%), Eukaryota (0.14%)",Actino-pnp,Actino-pnp RNA,Cis-reg;
RF01690,Bacteria,Bacteria (100.0%),"Bacteria (99.79%), Eukaryota (0.21%)",Bacillaceae-1,Bacillaceae-1 RNA,Gene; sRNA;
RF01691,Bacteria,"Bacteria (93.55%), unclassified sequences (6.45%)","Bacteria (92.91%), Eukaryota (5.51%), unclassified sequences (1.57%)",Bacillus-plasmid,Bacillus-plasmid RNA,Gene; sRNA;
RF01692,Bacteria,"Bacteria (62.86%), unclassified sequences (37.14%)","Bacteria (93.02%), unclassified sequences (6.05%), Eukaryota (0.93%)",Bacteroid-trp,Bacteroidete tryptophan peptide leader RNA,Cis-reg; leader;
RF01693,Bacteria,"unclassified sequences (58.54%), Bacteria (41.46%)","Bacteria (91.19%), unclassified sequences (8.81%)",Bacteroidales-1,Bacteroidales-1 6S-Bacteroidales RNA suggested,Gene; sRNA;
RF01694,Bacteria,"unclassified sequences (50.0%), Bacteria (50.0%)","Bacteria (75.31%), unclassified sequences (24.69%)",Bacteroides-1,Bacteroides-1 RNA,Gene; sRNA;
RF01695,Mixed/Bacteria,"Bacteria (87.28%), unclassified sequences (9.87%), Viruses (2.63%), Other (0.22%)","Bacteria (91.46%), unclassified sequences (4.4%), Eukaryota (2.18%), Viruses (1.96%)",C4,C4 antisense RNA,Gene; antisense;
RF01696,Bacteria,Bacteria (100.0%),Bacteria (100.0%),Chlorobi-1,Chlorobi-1 RNA,Gene; sRNA;
RF01697,Bacteria,Bacteria (100.0%),Bacteria (100.0%),Chlorobi-RRM,Chlorobi-RRM RNA,Cis-reg;
RF01698,Bacteria,Bacteria (100.0%),Bacteria (100.0%),Chloroflexi-1,Chloroflexi-1 RNA,Gene; sRNA;
RF01699,Bacteria/Mixed,"unclassified sequences (60.82%), Bacteria (39.18%)","Bacteria (89.23%), unclassified sequences (10.5%), Eukaryota (0.27%)",Clostridiales-1,Clostridiales-1 RNA,Gene; sRNA;
RF01700,Bacteria/Mixed,"unclassified sequences (66.67%), Bacteria (33.33%)","Bacteria (61.11%), unclassified sequences (22.22%), Eukaryota (16.67%)",Collinsella-1,Collinsella-1 RNA,Gene; sRNA;
RF01701,Bacteria,"unclassified sequences (66.79%), Bacteria (33.21%)","Bacteria (66.16%), unclassified sequences (33.84%)",Cyano-1,Cyano-1 RNA,Gene; sRNA;
RF01702,Bacteria/Mixed,"unclassified sequences (82.46%), Bacteria (17.54%)","unclassified sequences (71.21%), Bacteria (27.27%), Eukaryota (1.52%)",Cyano-2,Cyano-2 RNA,Gene; sRNA;
RF01703,Bacteria,Bacteria (100.0%),Bacteria (100.0%),Dictyoglomi-1,Dictyoglomi-1 RNA,Gene; sRNA;
RF01705,Bacteria,"Bacteria (67.66%), unclassified sequences (32.34%)","Bacteria (97.54%), Eukaryota (1.25%), unclassified sequences (1.21%)",Flavo-1,Flavo-1 RNA,Gene; sRNA;
RF01707,Bacteria,Bacteria (100.0%),"Bacteria (96.23%), Eukaryota (3.77%)",JUMPstart,JUMPstart RNA,Cis-reg;
RF01708,Bacteria,Bacteria (100.0%),"Bacteria (99.02%), Eukaryota (0.98%)",L17DE,L17 ribosomal protein downstream element,Cis-reg;
RF01709,Bacteria,Bacteria (100.0%),Bacteria (100.0%),Lacto-rpoB,Lacto-rpoB RNA,Cis-reg;
RF01710,Bacteria,Bacteria (100.0%),Bacteria (100.0%),Lacto-usp,Lacto-usp RNA,Gene; sRNA;
RF01711,Bacteria,Bacteria (100.0%),Bacteria (100.0%),Lnt,Lnt RNA,Cis-reg;
RF01712,unclassified sequences/Bacteria,"unclassified sequences (97.06%), Bacteria (2.94%)","unclassified sequences (70.21%), Bacteria (29.79%)",Methylobacterium-1,Methylobacterium-1 RNA,Gene; sRNA;
RF01713,Bacteria,Bacteria (100.0%),Bacteria (100.0%),Moco-II,Moco-II RNA,Cis-reg;
RF01715,Bacteria,Bacteria (100.0%),Bacteria (100.0%),Pedo-repair,Pedo-repair RNA,Cis-reg;
RF01716,Bacteria,"unclassified sequences (70.77%), Bacteria (29.23%)","unclassified sequences (59.74%), Bacteria (40.26%)",PhotoRC-I,PhotoRC-I RNA,Cis-reg;
RF01718,unclassified sequences/Bacteria,"unclassified sequences (93.75%), Bacteria (6.25%)","unclassified sequences (83.33%), Bacteria (16.67%)",Polynucleobacter-1,Polynucleobacter-1 RNA,Gene; sRNA;
RF01719,Bacteria,Bacteria (100.0%),"Bacteria (93.07%), unclassified sequences (5.94%), Eukaryota (0.99%)",Pseudomon-1,Pseudomon-1/ErsA RNA,Gene; sRNA;
RF01720,Bacteria,Bacteria (100.0%),"Bacteria (97.78%), Eukaryota (2.22%)",Pseudomon-Rho,Pseudomon-Rho RNA,Cis-reg;
RF01721,Bacteria,Bacteria (100.0%),Bacteria (100.0%),Pseudomon-groES,Pseudomon-groES RNA,Cis-reg;
RF01723,Bacteria,Bacteria (100.0%),Bacteria (100.0%),Rhizobiales-2,Rhizobiales-2 RNA,Gene; sRNA;
RF01724,Bacteria/Mixed,Bacteria (100.0%),"Bacteria (88.46%), Eukaryota (11.54%)",SAM-Chlorobi,SAM-Chlorobi RNA,Cis-reg;
RF01726,Bacteria/Mixed,"unclassified sequences (80.95%), Bacteria (19.05%)","Bacteria (81.3%), unclassified sequences (17.5%), Eukaryota (1.2%)",SAM-II_long_loops,SAM-II long loop,Cis-reg;
RF01727,Bacteria/Mixed,"unclassified sequences (50.0%), Bacteria (50.0%)","Bacteria (89.92%), unclassified sequences (9.3%), Eukaryota (0.78%)",SAM-SAH,SAM/SAH riboswitch,Cis-reg; riboswitch;
RF01728,Bacteria/Mixed,"Bacteria (95.35%), unclassified sequences (4.65%)","Bacteria (86.41%), Eukaryota (12.14%), unclassified sequences (1.46%)",STAXI,STAXI RNA,Gene; sRNA;
RF01729,unclassified sequences/Bacteria,unclassified sequences (100.0%),"unclassified sequences (86.67%), Bacteria (13.33%)",Termite-flg,Termite-flg RNA,Cis-reg;
RF01731,Bacteria/Mixed,"unclassified sequences (86.67%), Bacteria (13.33%)","Bacteria (89.36%), unclassified sequences (9.94%), Eukaryota (0.7%)",TwoAYGGAY,TwoAYGGAY RNA,Cis-reg;
RF01732,Bacteria,Bacteria (100.0%),"Bacteria (96.34%), unclassified sequences (3.66%)",asd,MarS sRNA,Gene; sRNA;
RF01733,Bacteria,Bacteria (100.0%),Bacteria (100.0%),atoC,atoC RNA,Cis-reg;
RF01734,Mixed/Bacteria,"Bacteria (79.24%), unclassified sequences (11.76%), Archaea (8.65%), Other (0.35%)","Bacteria (92.6%), Archaea (4.78%), unclassified sequences (1.76%), Eukaryota (0.81%), Other (0.05%)",Fluoride,Fluoride riboswitch (crcB),Cis-reg; riboswitch;
RF01735,Bacteria,"Bacteria (90.0%), unclassified sequences (10.0%)","Bacteria (97.97%), unclassified sequences (1.63%), Eukaryota (0.41%)",epsC,epsC RNA,Cis-reg;
RF01736,Bacteria,Bacteria (100.0%),Bacteria (100.0%),flg-Rhizobiales,flg-Rhizobiales RNA,Cis-reg;
RF01738,Bacteria,Bacteria (100.0%),Bacteria (100.0%),gabT,gabT RNA,Cis-reg;
RF01739,unclassified sequences/Bacteria,"unclassified sequences (96.7%), Bacteria (3.19%), Viruses (0.11%)","unclassified sequences (78.76%), Bacteria (21.24%)",glnA,Glutamine riboswitch,Cis-reg; riboswitch;
RF01740,Bacteria,Bacteria (100.0%),"Bacteria (98.08%), Eukaryota (1.92%)",gyrA,gyrA RNA,Cis-reg;
RF01742,Bacteria,Bacteria (100.0%),Bacteria (100.0%),lactis-plasmid,lactis-plasmid RNA,Gene; sRNA;
RF01743,Bacteria,Bacteria (100.0%),Bacteria (100.0%),leu-phe_leader,leu/phe leader RNA from Lactococcus,Cis-reg; leader;
RF01744,Bacteria,Bacteria (100.0%),"Bacteria (96.15%), Eukaryota (3.85%)",livK,livK RNA,Cis-reg;
RF01746,Bacteria,"Bacteria (55.56%), unclassified sequences (44.44%)","Bacteria (95.22%), unclassified sequences (3.98%), Eukaryota (0.8%)",mraW,mraW RNA,Cis-reg;
RF01747,Bacteria/Mixed,"unclassified sequences (81.67%), Bacteria (18.33%)","Bacteria (87.05%), unclassified sequences (12.69%), Eukaryota (0.26%)",msiK,msiK RNA,Cis-reg;
RF01748,Bacteria/Mixed,Bacteria (100.0%),"Bacteria (87.88%), Eukaryota (12.12%)",nuoG,nuoG RNA,Cis-reg;
RF01749,Bacteria,Bacteria (100.0%),Bacteria (100.0%),pan,pan motif,Cis-reg;
RF01750,Mixed/Bacteria,"Bacteria (54.59%), unclassified sequences (44.32%), Other (1.08%)","Bacteria (96.08%), unclassified sequences (3.75%), Other (0.11%), Eukaryota (0.06%)",ZMP-ZTP,ZMP/ZTP riboswitch,Cis-reg; riboswitch;
RF01752,Bacteria,"unclassified sequences (61.29%), Bacteria (38.71%)","Bacteria (57.78%), unclassified sequences (42.22%)",psaA,psaA RNA,Cis-reg;
RF01753,Bacteria,"unclassified sequences (69.23%), Bacteria (30.77%)","unclassified sequences (57.45%), Bacteria (42.55%)",psbNH,psbNH RNA,Cis-reg;
RF01754,Bacteria,"Bacteria (84.46%), unclassified sequences (15.54%)","Bacteria (94.93%), unclassified sequences (4.02%), Eukaryota (1.05%)",radC,radC RNA,Cis-reg;
RF01755,Bacteria,Bacteria (100.0%),"Bacteria (98.86%), Eukaryota (1.14%)",rmf,rmf RNA,Cis-reg;
RF01756,Bacteria,Bacteria (100.0%),"Bacteria (98.89%), Eukaryota (1.11%)",rne-II,rne-II RNA,Cis-reg;
RF01757,Bacteria,Bacteria (100.0%),Bacteria (100.0%),sbcD,sbcD RNA,Gene; sRNA;
RF01758,Bacteria,Bacteria (100.0%),"Bacteria (98.89%), Eukaryota (1.11%)",sucA-II,sucA-II RNA,Cis-reg;
RF01759,Bacteria,Bacteria (100.0%),"Bacteria (98.77%), Eukaryota (1.23%)",sucC,sucC RNA,Cis-reg;
RF01760,Mixed/Bacteria,"Bacteria (70.21%), unclassified sequences (23.4%), Other (6.38%)","Bacteria (92.0%), unclassified sequences (5.5%), Other (1.5%), Eukaryota (1.0%)",traJ-II,traJ-II RNA,Cis-reg;
RF01763,Bacteria,Bacteria (100.0%),"Bacteria (99.12%), unclassified sequences (0.59%), Eukaryota (0.29%)",ykkC-III,Guanidine-III riboswitch,Cis-reg;
RF01764,Bacteria,Bacteria (100.0%),Bacteria (100.0%),yjdF,yjdF RNA,Cis-reg;
RF01766,Bacteria,Bacteria (100.0%),"Bacteria (97.69%), Eukaryota (2.31%)",cspA,cspA thermoregulator,Cis-reg; thermoregulator;
RF01767,Bacteria,Bacteria (100.0%),Bacteria (100.0%),SMK_box_riboswitch,SMK box translational riboswitch (SAM-III),Cis-reg; riboswitch;
RF01769,Bacteria,Bacteria (100.0%),"Bacteria (97.58%), Eukaryota (2.42%)",greA,Enterobacteria greA leader,Cis-reg; leader;
RF01770,Bacteria,Bacteria (100.0%),"Bacteria (97.9%), Eukaryota (2.1%)",rimP,Gammaprotebacteria rimP leader,Cis-reg; leader;
RF01771,Bacteria,Bacteria (100.0%),"Bacteria (95.92%), Eukaryota (4.08%)",rnk_leader,Enterobacteria rnk leader,Cis-reg; leader;
RF01772,Bacteria,Bacteria (100.0%),"Bacteria (98.11%), Eukaryota (1.89%)",rnk_pseudo,Pseudomonas rnk leader,Cis-reg; leader;
RF01773,Bacteria,Bacteria (100.0%),Bacteria (100.0%),rpsL_pseudo,Pseudomonas rpsL leader,Cis-reg; leader;
RF01774,Bacteria,Bacteria (100.0%),"Bacteria (90.91%), Eukaryota (9.09%)",rpsL_ricks,Rickettsia rpsL leader,Cis-reg; leader;
RF01775,Bacteria,Bacteria (100.0%),Bacteria (100.0%),RsaOG,RNA S.aureus Orsay G,Gene; sRNA;
RF01776,Bacteria,Bacteria (100.0%),Bacteria (100.0%),RatA,RNA anti-toxin A,Gene; antitoxin;
RF01779,Bacteria,Bacteria (100.0%),Bacteria (100.0%),AS1726,AS1726 sRNA,Gene;
RF01780,Bacteria,Bacteria (100.0%),Bacteria (100.0%),AS1890,AS1890 sRNA,Gene;
RF01781,Bacteria,Bacteria (100.0%),"Bacteria (99.87%), Eukaryota (0.13%)",ASdes,ASdes TB sRNA,Gene; sRNA;
RF01782,Bacteria,Bacteria (100.0%),"Bacteria (99.87%), Eukaryota (0.13%)",ASpks,ASpks TB sRNA,Gene; antisense;
RF01783,Bacteria,Bacteria (100.0%),Bacteria (100.0%),b55,Mycobacterium B11,Gene; sRNA;
RF01784,Bacteria/Mixed,"unclassified sequences (75.0%), Bacteria (25.0%)","Bacteria (54.55%), unclassified sequences (40.91%), Eukaryota (4.55%)",bablM,bablM sRNA,Gene; sRNA;
RF01786,Bacteria,"Bacteria (85.19%), unclassified sequences (14.81%)","Bacteria (88.63%), unclassified sequences (11.37%)",c-di-GMP-II,Cyclic di-GMP-II riboswitch,Cis-reg; riboswitch;
RF01791,Bacteria,Bacteria (100.0%),"Bacteria (99.51%), Eukaryota (0.49%)",F6,F6 TB sRNA,Gene; sRNA;
RF01793,Bacteria,"Bacteria (76.4%), unclassified sequences (23.6%)","Bacteria (96.5%), unclassified sequences (3.34%), Eukaryota (0.16%)",ffh,ffh sRNA,Gene; sRNA;
RF01794,Bacteria,"Bacteria (96.7%), Other (3.3%)","Bacteria (92.86%), Eukaryota (5.71%), Viruses (1.43%)",sok,sok antitoxin (CssrC),Gene; antitoxin;
RF01795,Bacteria,Bacteria (100.0%),Bacteria (100.0%),FourU,FourU thermometer RNA element,Cis-reg; thermoregulator;
RF01796,Bacteria,Bacteria (100.0%),"Bacteria (94.35%), Eukaryota (5.65%)",frnS,Fumarate/nitrate reductase regulator sRNA,Gene; sRNA;
RF01797,Bacteria,Bacteria (100.0%),Bacteria (100.0%),fstAT,Fst antitoxin sRNA,Gene; antitoxin;
RF01798,Bacteria,Bacteria (100.0%),Bacteria (100.0%),g2,G2,Gene;
RF01808,Bacteria,Bacteria (100.0%),Bacteria (100.0%),MicX,MicX Vibrio cholerae sRNA,Gene; sRNA;
RF01809,Bacteria,"Bacteria (95.0%), unclassified sequences (5.0%)","Bacteria (97.3%), unclassified sequences (2.7%)",symR,SymR antitoxin,Gene; antitoxin;
RF01810,unclassified sequences/Bacteria,"unclassified sequences (90.0%), Bacteria (10.0%)","unclassified sequences (56.25%), Bacteria (43.75%)",pntA,pntA sRNA,Gene; sRNA;
RF01811,Bacteria,Bacteria (100.0%),"Bacteria (95.65%), Eukaryota (4.35%)",PtaRNA1,Plasmid transferred anti-sense RNA,Gene; antitoxin;
RF01812,Bacteria,Bacteria (100.0%),Bacteria (100.0%),Pxr,Pxr regulatory sRNA,Gene; sRNA;
RF01813,Bacteria,"Bacteria (92.31%), unclassified sequences (7.69%)","Bacteria (94.81%), unclassified sequences (5.19%)",rdlD,rdlD antitoxin,Gene; antitoxin;
RF01814,Bacteria,"unclassified sequences (78.57%), Bacteria (21.43%)","Bacteria (52.17%), unclassified sequences (47.83%)",rhtB,rhtB sRNA,Gene; sRNA;
RF01815,unclassified sequences/Bacteria,unclassified sequences (100.0%),"Bacteria (96.1%), unclassified sequences (2.6%), Eukaryota (1.3%)",rpsB,rpsB sRNA,Gene; sRNA;
RF01816,Bacteria,Bacteria (100.0%),Bacteria (100.0%),RsaA,RNA Staph. aureus A,Gene; sRNA;
RF01817,Bacteria,Bacteria (100.0%),Bacteria (100.0%),RsaB,RNA Staph. aureus A,Gene; sRNA;
RF01818,Bacteria,Bacteria (100.0%),Bacteria (100.0%),RsaC,RNA Staph. aureus C,Gene; sRNA;
RF01819,Bacteria,Bacteria (100.0%),Bacteria (100.0%),RsaD,RNA Staph. aureus D,Gene; sRNA;
RF01820,Bacteria,Bacteria (100.0%),Bacteria (100.0%),RsaE,RNA Staph. aureus E (RoxS),Gene; sRNA;
RF01821,Bacteria,Bacteria (100.0%),Bacteria (100.0%),RsaH,RNA Staph. aureus H,Gene; sRNA;
RF01822,Bacteria,Bacteria (100.0%),Bacteria (100.0%),RsaJ,RNA Staph. aureus A,Gene; sRNA;
RF01823,Bacteria/Mixed,"unclassified sequences (66.67%), Bacteria (33.33%)","Bacteria (50.0%), Eukaryota (30.0%), unclassified sequences (20.0%)",rspL,rpsL sRNA,Gene; sRNA;
RF01826,Bacteria,"Bacteria (71.43%), unclassified sequences (28.57%)",Bacteria (100.0%),SAM_V,SAM-V riboswitch,Cis-reg; riboswitch;
RF01827,Bacteria,"unclassified sequences (53.85%), Bacteria (46.15%)","Bacteria (66.67%), unclassified sequences (33.33%)",SAR11_0636,SAR11_0636 sRNA,Gene; sRNA;
RF01828,Bacteria/Mixed,Bacteria (100.0%),"Viruses (70.0%), Bacteria (30.0%)",SprD,Small pathogenicity island RNA D,Gene; sRNA;
RF01830,Bacteria,"Bacteria (97.06%), unclassified sequences (2.94%)","Bacteria (96.92%), Eukaryota (2.86%), unclassified sequences (0.22%)",StyR-44,Salmonella enterica Typhi npcRNA 44,Gene;
RF01831,Mixed/Bacteria,"Bacteria (73.27%), unclassified sequences (24.75%), Other (1.98%)","Bacteria (95.83%), unclassified sequences (3.85%), Other (0.32%)",THF,THF riboswitch,Cis-reg; riboswitch;
RF01832,Bacteria,"Bacteria (92.86%), unclassified sequences (7.14%)","Bacteria (93.55%), Eukaryota (6.45%)",ROSE_2,Repression of heat shock gene expression (ROSE) element,Cis-reg; thermoregulator;
RF01842,Bacteria,Bacteria (100.0%),Bacteria (100.0%),mycoplasma_FSE,mycoplasma ribosomal frameshift element,Cis-reg; frameshift_element;
RF01843,Bacteria,Bacteria (100.0%),Bacteria (100.0%),neisseria_FSE,neiserria ribosomal frameshift element,Cis-reg; frameshift_element;
RF01849,Bacteria,"Bacteria (91.89%), unclassified sequences (8.11%)","Bacteria (96.64%), Eukaryota (2.13%), unclassified sequences (1.01%), Viruses (0.22%)",alpha_tmRNA,Alphaproteobacteria transfer-messenger RNA,Gene;
RF01850,Bacteria,Bacteria (100.0%),"Bacteria (97.22%), Eukaryota (2.78%)",beta_tmRNA,Betaproteobacteria transfer-messenger RNA,Gene;
RF01851,Bacteria/Mixed,Bacteria (100.0%),"Bacteria (89.74%), Viruses (10.26%)",cyano_tmRNA,Cyanobacteria transfer-messenger RNA,Gene;
RF01852,Mixed,"Bacteria (68.81%), Eukaryota (29.36%), Archaea (1.83%)","Bacteria (73.5%), Eukaryota (25.86%), Archaea (0.43%), Viruses (0.22%)",tRNA-Sec,Selenocysteine transfer RNA,Gene; tRNA;
RF01854,Bacteria,Bacteria (100.0%),"Bacteria (99.28%), Archaea (0.63%), Eukaryota (0.09%)",Bacteria_large_SRP,Bacterial large signal recognition particle RNA,Gene;
RF01858,Bacteria,Bacteria (100.0%),Bacteria (100.0%),RsaF,RNA Staph. aureus F,Gene; sRNA;
RF01859,Bacteria,"Bacteria (97.18%), unclassified sequences (2.82%)","Bacteria (92.92%), Eukaryota (6.54%), unclassified sequences (0.54%)",Phe_leader,Phenylalanine leader peptide,Cis-reg; leader;
RF01867,Bacteria,Bacteria (100.0%),Bacteria (100.0%),CC2171,caulobacter sRNA CC2171,Gene; sRNA;
RF01988,Bacteria,"Bacteria (75.0%), unclassified sequences (25.0%)","Bacteria (91.67%), Eukaryota (6.67%), unclassified sequences (1.67%)",SECIS_2,Selenocysteine insertion sequence 2,Cis-reg;
RF01989,Bacteria,"Bacteria (91.67%), unclassified sequences (8.33%)","Bacteria (98.33%), Eukaryota (1.26%), unclassified sequences (0.42%)",SECIS_3,Selenocysteine insertion sequence 3,Cis-reg;
RF01990,Bacteria,"Bacteria (95.83%), unclassified sequences (4.17%)","Bacteria (99.71%), unclassified sequences (0.29%)",SECIS_4,Selenocysteine insertion sequence 4,Cis-reg;
RF01998,Bacteria,"Bacteria (67.93%), unclassified sequences (32.07%)","Bacteria (95.63%), unclassified sequences (3.46%), Eukaryota (0.68%), Archaea (0.23%)",group-II-D1D4-1,Group II catalytic intron D1-D4-1,Intron;
RF01999,Mixed/Bacteria,"Bacteria (71.53%), unclassified sequences (26.39%), Archaea (2.08%)","Bacteria (93.35%), unclassified sequences (4.86%), Eukaryota (1.15%), Archaea (0.64%)",group-II-D1D4-2,Group II catalytic intron D1-D4-2,Intron;
RF02001,Bacteria,"Bacteria (61.08%), unclassified sequences (38.92%)","Bacteria (94.0%), unclassified sequences (4.62%), Eukaryota (1.11%), Archaea (0.26%)",group-II-D1D4-3,Group II catalytic intron D1-D4-3,Intron;
RF02003,Bacteria,"Bacteria (71.11%), unclassified sequences (28.89%)","Bacteria (91.38%), unclassified sequences (4.48%), Eukaryota (2.07%), Archaea (2.07%)",group-II-D1D4-4,Group II catalytic intron D1-D4-4,Intron;
RF02004,Bacteria,"Bacteria (72.66%), unclassified sequences (27.34%)","Bacteria (98.92%), Eukaryota (0.87%), Viruses (0.22%)",group-II-D1D4-5,Group II catalytic intron D1-D4-5,Intron;
RF02005,Mixed/Bacteria,"Bacteria (54.02%), unclassified sequences (45.4%), Other (0.57%)","Bacteria (99.03%), Archaea (0.56%), Eukaryota (0.4%)",group-II-D1D4-6,Group II catalytic intron D1-D4-6,Intron;
RF02029,Bacteria,Bacteria (100.0%),"Bacteria (95.0%), Eukaryota (5.0%)",sraA,sraA,Gene; sRNA;
RF02030,Bacteria,"Bacteria (95.83%), unclassified sequences (4.17%)","Bacteria (95.31%), Eukaryota (3.91%), unclassified sequences (0.78%)",tp2,tp2,Gene; sRNA;
RF02031,Bacteria,Bacteria (100.0%),"Bacteria (95.39%), Eukaryota (4.61%)",tpke11,tpke11,Gene; sRNA;
RF02033,Mixed/Bacteria,"Bacteria (85.61%), unclassified sequences (12.95%), Viruses (0.72%), Archaea (0.72%)","Bacteria (93.99%), Archaea (3.87%), unclassified sequences (1.83%), Viruses (0.2%), Eukaryota (0.1%)",HEARO,HNH endonuclease-associated RNA and ORF (HEARO) RNA,Gene;
RF02048,Bacteria,Bacteria (100.0%),Bacteria (100.0%),STnc30,Salmonella enterica conserved region STnc30,Gene; sRNA;
RF02049,Bacteria,Bacteria (100.0%),Bacteria (100.0%),STnc460,Salmonella enterica sRNA STnc460,Gene; sRNA;
RF02050,Bacteria,Bacteria (100.0%),Bacteria (100.0%),STnc470,Salmonella enterica sRNA STnc470,Gene; sRNA;
RF02051,Bacteria,"Bacteria (83.33%), unclassified sequences (16.67%)","Bacteria (93.33%), unclassified sequences (4.44%), Eukaryota (2.22%)",STnc450,Enterobacterial sRNA STnc450,Gene; sRNA;
RF02052,Bacteria,"Bacteria (90.0%), unclassified sequences (10.0%)","Bacteria (90.0%), Eukaryota (5.0%), unclassified sequences (5.0%)",STnc630,Enterobacterial sRNA STnc630,Gene; sRNA;
RF02053,Bacteria/Mixed,"Bacteria (71.43%), unclassified sequences (28.57%)","Bacteria (86.21%), Eukaryota (6.9%), unclassified sequences (6.9%)",STnc430,Enterobacterial sRNA STnc430,Gene; sRNA;
RF02054,Bacteria,Bacteria (100.0%),Bacteria (100.0%),STnc420,Salmonella enterica sRNA STnc420,Gene; sRNA;
RF02055,Bacteria,Bacteria (100.0%),Bacteria (100.0%),STnc380,Enterobacterial sRNA STnc380,Gene; sRNA;
RF02056,Bacteria,Bacteria (100.0%),Bacteria (100.0%),STnc390,Salmonella sRNA STnc390,Gene; sRNA;
RF02057,Bacteria,"Bacteria (94.12%), unclassified sequences (5.88%)","Bacteria (95.45%), Eukaryota (3.03%), unclassified sequences (1.52%)",STnc40,Salmonella enterica sRNA STnc40,Gene; sRNA;
RF02058,Bacteria,Bacteria (100.0%),Bacteria (100.0%),STnc400,Gammaproteobacterial sRNA STnc400,Gene;
RF02059,Bacteria,Bacteria (100.0%),Bacteria (100.0%),STnc50,Salmonella enterica sRNA STnc40,Gene; sRNA;
RF02060,Bacteria/Mixed,"Bacteria (64.29%), unclassified sequences (35.71%)","Bacteria (75.0%), unclassified sequences (20.83%), Eukaryota (4.17%)",STnc410,Enterobacterial sRNA STnc410,Gene; sRNA;
RF02062,Bacteria,Bacteria (100.0%),Bacteria (100.0%),STnc361,Salmonella enterica sRNA STnc361,Gene; sRNA;
RF02063,Bacteria,Bacteria (100.0%),Bacteria (100.0%),STnc350,Salmonella enterica sRNA STnc350,Gene; sRNA;
RF02064,Bacteria,Bacteria (100.0%),"Bacteria (96.15%), Eukaryota (3.85%)",STnc370,Enterobacterial sRNA STnc370,Gene; sRNA;
RF02065,Bacteria,Bacteria (100.0%),Bacteria (100.0%),STnc340,Enterobacterial sRNA STnc340,Gene; sRNA;
RF02066,Bacteria,Bacteria (100.0%),Bacteria (100.0%),STnc320,Salmonella enterica sRNA STnc320,Gene; sRNA;
RF02067,Bacteria,Bacteria (100.0%),Bacteria (100.0%),STnc310,Salmonella enterica sRNA STnc310,Gene; sRNA;
RF02068,Bacteria,"Bacteria (83.33%), unclassified sequences (16.67%)","Bacteria (90.0%), unclassified sequences (10.0%)",STnc480,Enterobacterial sRNA STnc480,Gene; sRNA;
RF02069,Bacteria,Bacteria (100.0%),"Bacteria (91.18%), Eukaryota (8.82%)",STnc70,Enterobacterial sRNA STnc70,Gene; sRNA;
RF02070,Bacteria,Bacteria (100.0%),Bacteria (100.0%),STnc300,Salmonella enterica sRNA STnc300,Gene; sRNA;
RF02071,Bacteria,Bacteria (100.0%),Bacteria (100.0%),STnc280,Salmonella enterica sRNA STnc280,Gene; sRNA;
RF02072,Bacteria,Bacteria (100.0%),Bacteria (100.0%),STnc590,Salmonella enterica sRNA STnc590,Gene; sRNA;
RF02073,Bacteria,Bacteria (100.0%),Bacteria (100.0%),STnc260,Salmonella enterica sRNA STnc260,Gene; sRNA;
RF02074,Bacteria,"Bacteria (86.67%), unclassified sequences (13.33%)","Bacteria (96.3%), unclassified sequences (2.47%), Eukaryota (1.23%)",STnc240,Enterobacterial sRNA STnc240,Gene; sRNA;
RF02075,Bacteria,"Bacteria (72.73%), unclassified sequences (27.27%)","Bacteria (88.46%), unclassified sequences (11.54%)",STnc230,Enterobacterial sRNA STnc230,Gene; sRNA;
RF02076,Bacteria/Mixed,Bacteria (100.0%),"Bacteria (83.7%), Viruses (12.59%), Eukaryota (3.7%)",STnc100,Gammaproteobacterial sRNA STnc100,Gene; sRNA;
RF02077,Bacteria,Bacteria (100.0%),Bacteria (100.0%),STnc220,Salmonella enterica sRNA STnc220,Gene; sRNA;
RF02078,Bacteria,Bacteria (100.0%),Bacteria (100.0%),STnc210,Salmonella enterica sRNA STnc210,Gene; sRNA;
RF02079,Bacteria,"Bacteria (90.0%), unclassified sequences (10.0%)","Bacteria (96.77%), unclassified sequences (3.23%)",STnc180,Enterobacterial sRNA STnc180,Gene; sRNA;
RF02080,Bacteria,Bacteria (100.0%),Bacteria (100.0%),STnc170,Salmonella enterica sRNA STnc170,Gene; sRNA;
RF02081,Bacteria,"Bacteria (90.91%), unclassified sequences (9.09%)","Bacteria (94.67%), Eukaryota (4.0%), unclassified sequences (1.33%)",STnc550,Enterobacterial sRNA STnc550,Gene; sRNA;
RF02082,Bacteria,Bacteria (100.0%),"Bacteria (95.24%), Eukaryota (4.76%)",STnc540,Enterobacterial sRNA STnc540,Gene; sRNA;
RF02083,Bacteria,Bacteria (100.0%),Bacteria (100.0%),OrzO-P,OrzO-P RNA antitoxin family,Gene; antitoxin;
RF02084,Bacteria,Bacteria (100.0%),"Bacteria (97.62%), Eukaryota (2.38%)",STnc130,Enterobacteria sRNA STnc130,Gene; sRNA;
RF02088,Bacteria,Bacteria (100.0%),Bacteria (100.0%),STnc510,Enterobacterial sRNA STnc510,Gene; sRNA;
RF02099,Bacteria,Bacteria (100.0%),Bacteria (100.0%),rivX,rivX sRNA,Gene; sRNA;
RF02100,Bacteria,Bacteria (100.0%),Bacteria (100.0%),tfoR,Translational regulator of tfoXVC,Gene; sRNA;
RF02111,Bacteria/Mixed,"Bacteria (90.91%), unclassified sequences (9.09%)","Bacteria (73.91%), Viruses (13.04%), Eukaryota (8.7%), unclassified sequences (4.35%)",IS009,IS009,Gene;
RF02144,Bacteria,Bacteria (100.0%),"Bacteria (98.08%), Eukaryota (1.92%)",rsmX,rsmX,Gene;
RF02194,Bacteria,"Bacteria (96.77%), unclassified sequences (3.23%)","Bacteria (97.19%), Eukaryota (1.69%), unclassified sequences (0.56%), Archaea (0.56%)",HPnc0260,Bacterial antisense RNA HPnc0260,Gene; antisense;
RF02221,Bacteria,"Bacteria (95.95%), unclassified sequences (4.05%)","Bacteria (90.96%), Viruses (5.93%), Eukaryota (3.11%)",sRNA-Xcc1,sRNA-Xcc1,Gene; sRNA;
RF02222,Bacteria,Bacteria (100.0%),Bacteria (100.0%),sX2,Xanthomonas sRNA sX2,Gene; sRNA;
RF02223,Bacteria,Bacteria (100.0%),"Bacteria (97.14%), Eukaryota (2.86%)",sX4,Proteobacterial sRNA sX4,Gene; sRNA;
RF02224,Bacteria,Bacteria (100.0%),Bacteria (100.0%),sX5,Xanthomonadaceae sRNA sX5,Gene; sRNA;
RF02225,Bacteria/Mixed,Bacteria (100.0%),"Bacteria (89.66%), Eukaryota (10.34%)",sX6,Proteobacterial sRNA sX6,Gene; sRNA;
RF02226,Bacteria,Bacteria (100.0%),Bacteria (100.0%),sX7,Xanthomonas sRNA sX7,Gene; sRNA;
RF02227,Bacteria,"Bacteria (91.67%), unclassified sequences (8.33%)","Bacteria (97.87%), unclassified sequences (2.13%)",sX8,Proteobacterial sRNA sX8,Gene; sRNA;
RF02228,Bacteria,"Bacteria (93.75%), Eukaryota (6.25%)","Bacteria (99.75%), Eukaryota (0.25%)",sX9,Xanthomonas sRNA sX9,Gene; sRNA;
RF02230,Bacteria,Bacteria (100.0%),"Bacteria (96.0%), Eukaryota (4.0%)",sX11,Proteobacterial sRNA sX11,Gene; sRNA;
RF02231,Bacteria,Bacteria (100.0%),Bacteria (100.0%),sX12,Xanthomonas sRNA sX12,Gene; sRNA;
RF02232,Bacteria,"Bacteria (91.67%), unclassified sequences (8.33%)","Bacteria (98.36%), unclassified sequences (1.64%)",sX13,Xanthomonadaceae sRNA sX13,Gene; sRNA;
RF02233,Bacteria,Bacteria (100.0%),Bacteria (100.0%),sX14,Xanthomonas sRNA sX14/Xoo3,Gene; sRNA;
RF02235,Bacteria,"Bacteria (93.33%), unclassified sequences (6.67%)","Bacteria (96.88%), Eukaryota (1.56%), unclassified sequences (1.56%)",asX1,Xanthomonadaceae sRNA asX1,Gene; sRNA;
RF02236,Bacteria,Bacteria (100.0%),Bacteria (100.0%),asX2,Xanthomonas sRNA asX2,Gene; sRNA;
RF02237,Bacteria,Bacteria (100.0%),Bacteria (100.0%),asX3,Xanthomonas sRNA asX3,Gene; sRNA;
RF02238,Bacteria,Bacteria (100.0%),Bacteria (100.0%),asX4,Xanthomonas sRNA asX4/Xoo4,Gene; sRNA;
RF02239,Bacteria,Bacteria (100.0%),Bacteria (100.0%),asX6,Xanthomonas sRNA asX6,Gene; sRNA;
RF02240,Bacteria,"Bacteria (80.0%), unclassified sequences (20.0%)","Bacteria (88.89%), unclassified sequences (11.11%)",Xoo1,Xanthomonadaceae sRNA Xoo1,Gene; sRNA;
RF02241,Bacteria,Bacteria (100.0%),Bacteria (100.0%),Xoo2,Xanthomonadaceae sRNA Xoo2,Gene; sRNA;
RF02242,Bacteria,"Bacteria (66.67%), unclassified sequences (33.33%)","Bacteria (96.67%), unclassified sequences (3.33%)",Xoo5,Xanthomonadaceae sRNA Xoo5,Gene; sRNA;
RF02243,Bacteria,Bacteria (100.0%),Bacteria (100.0%),Xoo8,Proteobacterial sRNA Xoo8,Gene; sRNA;
RF02268,Bacteria,Bacteria (100.0%),Bacteria (100.0%),MtlS,MtlS RNA,Gene; sRNA;
RF02269,Bacteria/Mixed,"Bacteria (85.71%), unclassified sequences (14.29%)","Bacteria (64.71%), Eukaryota (32.35%), unclassified sequences (2.94%)",HPnc0580,Heliobacter pylori small RNA HPnc0580,Gene; sRNA;
RF02270,Bacteria,Bacteria (100.0%),Bacteria (100.0%),nse_sRNA,Neisseria sigma-E sRNA,Gene;
RF02273,Bacteria,Bacteria (100.0%),Bacteria (100.0%),FsrA,FsrA,Gene;
RF02274,Bacteria,Bacteria (100.0%),Bacteria (100.0%),AniS,AniS,Gene;
RF02276,Bacteria/Mixed,"Bacteria (95.83%), Viruses (4.17%)","Bacteria (89.81%), Viruses (8.8%), Archaea (1.39%)",Hammerhead_II,Hammerhead ribozyme (type II),Gene; ribozyme;
RF02278,Bacteria,"Bacteria (92.16%), unclassified sequences (7.84%)","Bacteria (98.41%), Eukaryota (0.95%), unclassified sequences (0.63%)",Betaproteobacteria_toxic_sRNA,Betaproteobacteria toxic small RNA,Gene; sRNA;
RF02341,Bacteria,Bacteria (100.0%),Bacteria (100.0%),ncrMT1302,Mycobacterium sRNA ncrMT1302,Gene; sRNA;
RF02342,Bacteria,Bacteria (100.0%),"Bacteria (98.46%), Eukaryota (1.54%)",ar7,Alphaproteobacterial sRNA ar7,Gene; sRNA;
RF02343,Bacteria,"Bacteria (96.43%), unclassified sequences (3.57%)","Bacteria (98.01%), Eukaryota (1.32%), unclassified sequences (0.66%)",ar9,Alphaproteobacterial sRNA ar9,Gene; sRNA;
RF02344,Bacteria,Bacteria (100.0%),"Bacteria (98.34%), Eukaryota (1.66%)",ar14,Alphaproteobacterial ar14,Gene; sRNA;
RF02345,Bacteria,"Bacteria (98.36%), unclassified sequences (1.64%)","Bacteria (96.4%), Eukaryota (3.24%), unclassified sequences (0.36%)",ar15,Alphaproteobacterial ar15,Gene; sRNA;
RF02346,Bacteria,"Bacteria (92.31%), unclassified sequences (7.69%)","Bacteria (96.91%), Eukaryota (2.58%), unclassified sequences (0.52%)",ar35,Alphaproteobacterial sRNA ar35,Gene; sRNA;
RF02347,Bacteria,"Bacteria (94.44%), unclassified sequences (5.56%)","Bacteria (98.79%), unclassified sequences (0.81%), Eukaryota (0.4%)",ar45,Alphaproteobacterial sRNA ar45,Gene; sRNA;
RF02348,Bacteria,Bacteria (100.0%),Bacteria (100.0%),tracrRNA,Trans-activating crRNA,Gene;
RF02349,Bacteria,Bacteria (100.0%),"Bacteria (98.81%), Eukaryota (1.19%)",psRNA2,Proteobacterial sRNA psRNA2,Gene; sRNA;
RF02350,Bacteria,Bacteria (100.0%),Bacteria (100.0%),psRNA6,Nitrosomonas sRNA psRNA6,Gene; sRNA;
RF02351,Bacteria,Bacteria (100.0%),Bacteria (100.0%),psRNA14,Proteobacteria sRNA psRNA14,Gene; sRNA;
RF02353,Bacteria,"Bacteria (91.67%), unclassified sequences (8.33%)","Bacteria (98.0%), unclassified sequences (2.0%)",BjrC68,Bradyrhizobiaceae sRNA BjrC68,Gene; sRNA;
RF02354,Bacteria,Bacteria (100.0%),Bacteria (100.0%),BjrC80,Bradyrhizobiaceae sRNA BjrC80,Gene; sRNA;
RF02355,Bacteria,"Bacteria (93.33%), unclassified sequences (6.67%)","Bacteria (98.65%), unclassified sequences (1.35%)",BjrC174,Bradyrhizobiaceae sRNA BjrC174,Gene; sRNA;
RF02356,Bacteria,"Bacteria (88.0%), unclassified sequences (12.0%)","Bacteria (97.37%), unclassified sequences (1.58%), Eukaryota (1.05%)",BjrC1505,Alphaproteobacterial sRNA BjrC1505,Gene; sRNA;
RF02358,Bacteria,Bacteria (100.0%),Bacteria (100.0%),hsp17,Hsp17 thermometer,Cis-reg; thermoregulator;
RF02360,Bacteria,"Bacteria (60.0%), unclassified sequences (40.0%)","Bacteria (80.0%), unclassified sequences (20.0%)",Yfr8,Cyanobacterial functional RNA 8/9,Gene; sRNA;
RF02362,Bacteria,"Bacteria (83.33%), unclassified sequences (16.67%)","Bacteria (88.89%), unclassified sequences (11.11%)",Yfr10,Cyanobacterial functional RNA 10,Gene; sRNA;
RF02363,Bacteria,"unclassified sequences (50.0%), Bacteria (50.0%)","Bacteria (66.67%), unclassified sequences (33.33%)",Yfr11,Cyanobacterial functional RNA 11,Gene; sRNA;
RF02364,Bacteria,"Bacteria (85.71%), unclassified sequences (14.29%)","Bacteria (88.89%), unclassified sequences (11.11%)",Yfr13,Cyanobacterial functional RNA 13,Gene; sRNA;
RF02365,Bacteria/Mixed,"Bacteria (66.67%), unclassified sequences (33.33%)","Bacteria (60.0%), Eukaryota (20.0%), unclassified sequences (20.0%)",Yfr17,Cyanobacterial functional RNA 17,Gene; sRNA;
RF02366,Bacteria,"Bacteria (83.33%), unclassified sequences (16.67%)","Bacteria (85.71%), unclassified sequences (14.29%)",Yfr19,Cyanobacterial functional RNA 19,Gene; sRNA;
RF02367,Bacteria,"Bacteria (85.71%), unclassified sequences (14.29%)","Bacteria (87.5%), unclassified sequences (12.5%)",Yfr20,Cyanobacterial functional RNA 20,Gene; sRNA;
RF02368,Bacteria,"unclassified sequences (50.0%), Bacteria (50.0%)","Bacteria (66.67%), unclassified sequences (33.33%)",Yfr21,Cyanobacterial functional RNA 21,Gene; sRNA;
RF02369,Bacteria,"Bacteria (85.71%), unclassified sequences (14.29%)","Bacteria (92.86%), unclassified sequences (7.14%)",h2cR,h2cR sRNA,Gene; sRNA;
RF02370,Bacteria,Bacteria (100.0%),Bacteria (100.0%),Trp_leader_2,Bacillus tryptophan operon leader,Cis-reg; leader;
RF02371,Bacteria,"Bacteria (90.0%), unclassified sequences (10.0%)","Bacteria (95.83%), unclassified sequences (4.17%)",PyrG_leader,PyrG leader,Cis-reg; leader;
RF02372,Bacteria,"Bacteria (88.89%), unclassified sequences (11.11%)","Bacteria (95.24%), unclassified sequences (4.76%)",PyrC_leader,PyrC leader,Cis-reg; leader;
RF02373,Bacteria,"Bacteria (92.59%), unclassified sequences (7.41%)","Bacteria (94.19%), Eukaryota (3.49%), unclassified sequences (2.33%)",PyrD_leader,PyrD leader,Cis-reg; leader;
RF02374,Bacteria,Bacteria (100.0%),Bacteria (100.0%),YenS,Yersinia YenS sRNA,Gene; sRNA;
RF02375,Bacteria,Bacteria (100.0%),"Bacteria (97.67%), Eukaryota (2.33%)",Aar,Aar sRNA,Gene; sRNA;
RF02376,Bacteria,Bacteria (100.0%),Bacteria (100.0%),antisense_SR1,SR1 sRNA,Gene; sRNA;
RF02377,Bacteria,Bacteria (100.0%),Bacteria (100.0%),SurA,SurA sRNA,Gene; sRNA;
RF02378,Bacteria,Bacteria (100.0%),Bacteria (100.0%),SurC,SurC sRNA,Gene; sRNA;
RF02379,Bacteria,"Bacteria (97.92%), unclassified sequences (2.08%)","Bacteria (99.18%), unclassified sequences (0.82%)",csRNA,Cia-dependent small RNA csRNA1,Gene; sRNA;
RF02384,Bacteria,Bacteria (100.0%),Bacteria (100.0%),FasX,FasX small RNA,Gene; sRNA;
RF02385,Bacteria,Bacteria (100.0%),Bacteria (100.0%),sau-13,Staphylococcus sRNA sau-13,Gene; sRNA;
RF02386,Bacteria,Bacteria (100.0%),Bacteria (100.0%),sau-19,Staphylococcus sRNA sau-19,Gene; sRNA;
RF02387,Bacteria,Bacteria (100.0%),Bacteria (100.0%),sau-27,Staphylococcus sRNA sau-27,Gene; sRNA;
RF02388,Bacteria,Bacteria (100.0%),Bacteria (100.0%),sau-30,Staphylococcus sRNA sau-30,Gene; sRNA;
RF02389,Bacteria,Bacteria (100.0%),Bacteria (100.0%),sau-31,Staphylococcus sRNA sau-31,Gene; sRNA;
RF02390,Bacteria,Bacteria (100.0%),Bacteria (100.0%),sau-41,Staphylococcus sRNA sau-41,Gene; sRNA;
RF02392,Bacteria,Bacteria (100.0%),Bacteria (100.0%),sau-53,Staphylococcus sRNA sau-53,Gene; sRNA;
RF02393,Bacteria,Bacteria (100.0%),Bacteria (100.0%),sau-59,Staphylococcus sRNA sau-59,Gene; sRNA;
RF02394,Bacteria,Bacteria (100.0%),Bacteria (100.0%),sau-63,Staphylococcus sRNA sau-63,Gene; sRNA;
RF02395,Bacteria,Bacteria (100.0%),Bacteria (100.0%),sau-66,Staphylococcus sRNA sau-66,Gene; sRNA;
RF02396,Bacteria,Bacteria (100.0%),Bacteria (100.0%),sau-5949,Staphylococcus sRNA sau-5949,Gene; sRNA;
RF02397,Bacteria,Bacteria (100.0%),Bacteria (100.0%),sau-5971,Staphylococcus sRNA sau-5971,Gene; sRNA;
RF02398,Bacteria,Bacteria (100.0%),Bacteria (100.0%),sau-6072,Staphylococcus sRNA sau-6072,Gene; sRNA;
RF02399,Bacteria,"Bacteria (94.12%), unclassified sequences (5.88%)","Bacteria (99.61%), Eukaryota (0.2%), unclassified sequences (0.2%)",NsiR1,Nitrogen stress-induced RNA 1,Gene; sRNA;
RF02401,Bacteria,"Bacteria (94.87%), unclassified sequences (5.13%)","Bacteria (94.23%), Eukaryota (3.85%), unclassified sequences (1.92%)",ClpQY_promoter,ClpQY promoter,Cis-reg;
RF02404,Bacteria,Bacteria (100.0%),Bacteria (100.0%),P33,Pseudomonas sRNA P33,Gene; sRNA;
RF02405,Bacteria,Bacteria (100.0%),Bacteria (100.0%),P34,Pseudomonas sRNA P34,Gene; sRNA;
RF02414,Bacteria,Bacteria (100.0%),Bacteria (100.0%),rli60,Listeria sRNA rli60,Gene; sRNA;
RF02415,Bacteria/Mixed,Bacteria (100.0%),"Bacteria (53.85%), Viruses (46.15%)",rliG,Listeria sRNA rliG,Gene; sRNA;
RF02417,Bacteria,Bacteria (100.0%),Bacteria (100.0%),VR-RNA,VR-RNA,Gene; sRNA;
RF02418,Bacteria,Bacteria (100.0%),Bacteria (100.0%),Spd-sr07,Streptococcus sRNA Spd-sr07,Gene; sRNA;
RF02419,Bacteria,Bacteria (100.0%),Bacteria (100.0%),Spd-sr37,Streptococcus sRNA Spd-sr37,Gene; sRNA;
RF02420,Bacteria,"Bacteria (90.91%), unclassified sequences (9.09%)","Bacteria (98.46%), unclassified sequences (1.54%)",Bp1_162,Burkholderia sRNA Bp1_Cand612_SIPHT,Gene; sRNA;
RF02421,Bacteria,"Bacteria (92.86%), unclassified sequences (7.14%)","Bacteria (99.42%), unclassified sequences (0.58%)",Bp1_684,Burkholderia sRNA Bp1_Cand684_SIPHT,Gene; sRNA;
RF02422,Bacteria,Bacteria (100.0%),Bacteria (100.0%),Bp1_738,Burkholderia sRNA Bp1_Cand738_SIPHT,Gene; sRNA;
RF02423,Bacteria,"Bacteria (93.33%), unclassified sequences (6.67%)","Bacteria (97.3%), Eukaryota (1.35%), unclassified sequences (1.35%)",Bp1_781,Burkholderia sRNA Bp1_Cand871_SIPHT,Gene; sRNA;
RF02424,Bacteria,Bacteria (100.0%),Bacteria (100.0%),Bp2_287,Burkholderia sRNA Bp2_Cand287_SIPHT,Gene; sRNA;
RF02425,Bacteria,Bacteria (100.0%),Bacteria (100.0%),SpF01_sRNA,Streptococcus sRNA SpF01,Gene; sRNA;
RF02426,Bacteria,Bacteria (100.0%),Bacteria (100.0%),SpF03_sRNA,Streptococcus sRNA SpF03,Gene; sRNA;
RF02427,Bacteria,Bacteria (100.0%),Bacteria (100.0%),SpF10_sRNA,Streptococcus sRNA SpF10,Gene; sRNA;
RF02428,Bacteria,Bacteria (100.0%),Bacteria (100.0%),SpF11_sRNA,Streptococcus sRNA SpF11,Gene; sRNA;
RF02429,Bacteria,Bacteria (100.0%),Bacteria (100.0%),SpF14_sRNA,Streptococcus sRNA SpF14,Gene; sRNA;
RF02430,Bacteria,Bacteria (100.0%),Bacteria (100.0%),SpF19_sRNA,Streptococcus sRNA SpF19,Gene; sRNA;
RF02431,Bacteria,Bacteria (100.0%),Bacteria (100.0%),SpF22_sRNA,Streptococcus sRNA SpF22,Gene; sRNA;
RF02432,Bacteria,Bacteria (100.0%),Bacteria (100.0%),SpF25_sRNA,Streptococcus sRNA SpF25,Gene; sRNA;
RF02433,Bacteria,Bacteria (100.0%),Bacteria (100.0%),SpF36_sRNA,Streptococcus sRNA SpF36,Gene; sRNA;
RF02434,Bacteria,Bacteria (100.0%),"Bacteria (96.15%), Eukaryota (3.85%)",SpF39_sRNA,Streptococcus sRNA SpF39,Gene; sRNA;
RF02435,Bacteria/Mixed,Bacteria (100.0%),"Bacteria (83.33%), Viruses (16.67%)",SpF41_sRNA,Streptococcus sRNA SpF41,Gene; sRNA;
RF02436,Bacteria,Bacteria (100.0%),Bacteria (100.0%),SpF43_sRNA,Streptococcus sRNA SpF43,Gene; sRNA;
RF02437,Bacteria,Bacteria (100.0%),Bacteria (100.0%),SpF44_sRNA,Streptococcus sRNA SpF44,Gene; sRNA;
RF02438,Bacteria,Bacteria (100.0%),Bacteria (100.0%),SpF51_sRNA,Streptococcus sRNA SpF51,Gene; sRNA;
RF02439,Bacteria,Bacteria (100.0%),Bacteria (100.0%),SpF56_sRNA,Streptococcus sRNA SpF56,Gene; sRNA;
RF02440,Bacteria,"unclassified sequences (69.02%), Bacteria (30.98%)","unclassified sequences (51.45%), Bacteria (48.55%)",SpF59_sRNA,Streptococcus sRNA SpF59 (ldcC RNA),Gene; sRNA;
RF02441,Bacteria,Bacteria (100.0%),Bacteria (100.0%),SpF61_sRNA,Streptococcus sRNA SpF61,Gene; sRNA;
RF02442,Bacteria,Bacteria (100.0%),"Bacteria (98.15%), Eukaryota (1.85%)",SpF66_sRNA,Streptococcus sRNA SpF66,Gene; sRNA;
RF02443,Bacteria,Bacteria (100.0%),Bacteria (100.0%),SpR08_sRNA,Streptococcus sRNA SpR08,Gene; sRNA;
RF02444,Bacteria,Bacteria (100.0%),Bacteria (100.0%),SpR10_sRNA,Streptococcus sRNA SpR10,Gene; sRNA;
RF02445,Bacteria,Bacteria (100.0%),Bacteria (100.0%),SpR14_sRNA,Streptococcus sRNA SpR14,Gene; sRNA;
RF02446,Bacteria,Bacteria (100.0%),Bacteria (100.0%),SpR18_sRNA,Streptococcus sRNA SpR18,Gene; sRNA;
RF02447,Bacteria,Bacteria (100.0%),Bacteria (100.0%),SpR19_sRNA,Streptococcus sRNA SpR19,Gene; sRNA;
RF02448,Bacteria,Bacteria (100.0%),Bacteria (100.0%),SpR20_sRNA,Streptococcus sRNA SpR20,Gene; sRNA;
RF02449,Bacteria,Bacteria (100.0%),Bacteria (100.0%),ncr1015,Bacillus sRNA ncr1015,Gene; sRNA;
RF02450,Bacteria,Bacteria (100.0%),Bacteria (100.0%),ncr1175,Bacillus sRNA ncr1175,Gene; sRNA;
RF02451,Bacteria,Bacteria (100.0%),Bacteria (100.0%),ncr1241,Bacillus sRNA ncr1241,Gene; sRNA;
RF02452,Bacteria,Bacteria (100.0%),Bacteria (100.0%),ncr1575,Bacillus sRNA ncr1575,Gene; sRNA;
RF02453,Bacteria,Bacteria (100.0%),Bacteria (100.0%),ncr952,Bacillus sRNA ncr952,Gene; sRNA;
RF02454,Bacteria,Bacteria (100.0%),"Bacteria (91.67%), Eukaryota (8.33%)",ncr982,Bacillus sRNA ncr982,Gene; sRNA;
RF02463,Bacteria,Bacteria (100.0%),Bacteria (100.0%),Ms_AS-1,Mycobacterium sRNA Ms_AS-1,Gene; sRNA;
RF02464,Bacteria,"Bacteria (77.78%), unclassified sequences (22.22%)","Bacteria (98.0%), unclassified sequences (2.0%)",Ms_AS-4,Actinobacteria sRNA Ms_AS-4,Gene; sRNA;
RF02465,Bacteria,Bacteria (100.0%),Bacteria (100.0%),Ms_AS-5,Mycobacterium sRNA Ms_AS-5,Gene; sRNA;
RF02466,Bacteria,"Bacteria (80.0%), unclassified sequences (20.0%)","Bacteria (98.02%), unclassified sequences (1.98%)",Ms_AS-8,Actinobacteria sRNA Ms_AS-8,Gene; sRNA;
RF02467,Bacteria,Bacteria (100.0%),Bacteria (100.0%),Ms_IGR-2,Mycobacterium sRNA Ms_IGR-2,Gene; sRNA;
RF02468,Bacteria,Bacteria (100.0%),Bacteria (100.0%),Ms_IGR-4,Mycobacterium sRNA Ms_IGR-4,Gene; sRNA;
RF02469,Bacteria,"Bacteria (92.86%), unclassified sequences (7.14%)","Bacteria (99.6%), unclassified sequences (0.4%)",Ms_IGR-7,Actinobacteria sRNA Ms_IGR-7,Gene; sRNA;
RF02470,Bacteria,Bacteria (100.0%),Bacteria (100.0%),Ms_IGR-8,Mycobacterium sRNA Ms_IGR-8,Gene; sRNA;
RF02471,Bacteria,Bacteria (100.0%),"Bacteria (99.82%), Eukaryota (0.18%)",Ms_IGR-5,Actinobacteria sRNA Ms_IGR-5,Gene; sRNA;
RF02495,Bacteria,Bacteria (100.0%),Bacteria (100.0%),ohsC_RNA,Oppression of Hydrophobic ORF by sRNA,Gene; antitoxin;
RF02496,Bacteria,"Bacteria (87.88%), unclassified sequences (12.12%)","Bacteria (95.24%), Eukaryota (2.38%), unclassified sequences (2.38%)",Atu_At1,Rhizobiales sRNA Atu_At1,Gene; sRNA;
RF02497,Bacteria/Mixed,Bacteria (100.0%),"Bacteria (83.33%), Eukaryota (16.67%)",Atu_C10,Rhizobiales sRNA Atu_C10,Gene; sRNA;
RF02498,Bacteria/Mixed,Bacteria (100.0%),"Bacteria (75.0%), Eukaryota (25.0%)",Atu_C3,Rhizobiales sRNA Atu_C3,Gene; sRNA;
RF02499,Bacteria/Mixed,Bacteria (100.0%),"Bacteria (75.0%), Eukaryota (25.0%)",Atu_C4,Rhizobiales sRNA Atu_C4,Gene; sRNA;
RF02500,Bacteria,"Bacteria (87.5%), unclassified sequences (12.5%)","Bacteria (98.89%), Eukaryota (1.11%)",Atu_C6,EcpR1,Gene; sRNA;
RF02501,Bacteria,"Bacteria (66.67%), unclassified sequences (33.33%)","Bacteria (96.0%), Eukaryota (2.0%), unclassified sequences (2.0%)",Atu_C7,Rhizobiales sRNA Atu_C7,Gene; sRNA;
RF02502,Bacteria,"Bacteria (92.59%), unclassified sequences (7.41%)","Bacteria (97.94%), Eukaryota (1.03%), unclassified sequences (1.03%)",Atu_C8,Rhizobiales sRNA Atu_C8,Gene; sRNA;
RF02503,Bacteria,Bacteria (100.0%),"Bacteria (97.33%), Eukaryota (2.67%)",Atu_C9,Rhizobiales sRNA Atu_C9,Gene; sRNA;
RF02504,Bacteria/Mixed,Bacteria (100.0%),"Bacteria (80.0%), Eukaryota (20.0%)",Atu_L1,Rhizobiales sRNA Atu_L1,Gene; sRNA;
RF02505,Bacteria/Mixed,Bacteria (100.0%),"Bacteria (66.67%), Eukaryota (33.33%)",Atu_L6,Rhizobiales sRNA Atu_L6,Gene; sRNA;
RF02506,Bacteria,Bacteria (100.0%),Bacteria (100.0%),Atu_Ti1,Rhizobiales sRNA Atu_Ti1,Gene; sRNA;
RF02507,Mixed/Bacteria,"Bacteria (75.0%), Other (25.0%)","Bacteria (93.75%), Other (6.25%)",Atu_Ti3,Rhizobiales sRNA Atu_Ti3,Gene; sRNA;
RF02508,Bacteria,Bacteria (100.0%),Bacteria (100.0%),Atu_Ti4,Rhizobiales sRNA Atu_Ti4,Gene; sRNA;
RF02514,Bacteria/Mixed,Bacteria (100.0%),"Bacteria (78.12%), Eukaryota (21.02%), Archaea (0.87%)",5_ureB_sRNA,5' ureB small RNA,Gene; sRNA;
RF02515,Bacteria,Bacteria (100.0%),Bacteria (100.0%),AfaR,AfaR small RNA,Gene; sRNA;
RF02519,Bacteria,Bacteria (100.0%),Bacteria (100.0%),ToxI,ToxI antitoxin,Gene; antitoxin;
RF02523,Bacteria,"Bacteria (81.25%), unclassified sequences (18.75%)","Bacteria (94.38%), unclassified sequences (3.37%), Eukaryota (2.25%)",ROSE_3,Repression of heat shock gene expression (ROSE) element,Cis-reg; thermoregulator;
RF02524,Bacteria,Bacteria (100.0%),Bacteria (100.0%),sagA,Streptococcus sRNA sagA,Gene; sRNA;
RF02525,Bacteria,Bacteria (100.0%),Bacteria (100.0%),SSRC30,Streptococcus sRNA SSRC30,Gene; sRNA;
RF02526,Bacteria,Bacteria (100.0%),Bacteria (100.0%),SSRC34_1,Streptococcus sRNA SSRC34,Gene; sRNA;
RF02527,Bacteria,Bacteria (100.0%),Bacteria (100.0%),SSRC38,Streptococcus sRNA SSRC38,Gene; sRNA;
RF02528,Bacteria,Bacteria (100.0%),Bacteria (100.0%),SSRC41,Streptococcus sRNA SSRC41,Gene; sRNA;
RF02529,Bacteria,Bacteria (100.0%),Bacteria (100.0%),SSRC8_1,Streptococcus sRNA SSRC8,Gene; sRNA;
RF02537,Bacteria,Bacteria (100.0%),Bacteria (100.0%),TarA,Vibrio ToxT activated RNA TarA,Gene; sRNA;
RF02538,Bacteria,Bacteria (100.0%),Bacteria (100.0%),TarB,Vibrio ToxT activated RNA TarB,Gene; sRNA;
RF02541,Bacteria/Mixed,Bacteria (100.0%),"Bacteria (66.13%), Eukaryota (33.83%), Archaea (0.04%)",LSU_rRNA_bacteria,Bacterial large subunit ribosomal RNA,Gene; rRNA;
RF02551,Bacteria,Bacteria (100.0%),"Bacteria (95.31%), Eukaryota (4.69%)",DapZ,ABC transporter regulator,Cis-reg;
RF02552,Bacteria,Bacteria (100.0%),"Bacteria (98.15%), Eukaryota (1.85%)",RcsR1,RcsR1 sRNA,Gene; sRNA;
RF02553,Bacteria,Bacteria (100.0%),"Bacteria (99.17%), Eukaryota (0.83%)",YrlA,Y RNA-like,Gene; sRNA;
RF02557,Bacteria,Bacteria (100.0%),Bacteria (100.0%),CbSR1,Coxiella burnetii sRNA 1,Gene; sRNA;
RF02558,Bacteria,Bacteria (100.0%),Bacteria (100.0%),CbSR2,Coxiella burnetii sRNA 2,Gene; antisense;
RF02559,Bacteria,Bacteria (100.0%),Bacteria (100.0%),CbSR4,Coxiella burnetii sRNA 4,Gene; antisense;
RF02560,Bacteria,Bacteria (100.0%),Bacteria (100.0%),CbSR9,Coxiella burnetii sRNA 9,Gene; antisense;
RF02561,Bacteria,Bacteria (100.0%),Bacteria (100.0%),CbSR12,Coxiella burnetii sRNA 12,Gene; sRNA;
RF02562,Bacteria,Bacteria (100.0%),Bacteria (100.0%),CbSR14,Coxiella burnetii sRNA 14,Gene; sRNA;
RF02563,Bacteria,Bacteria (100.0%),Bacteria (100.0%),CbSR3,Coxiella burnetii sRNA 3,Gene; antisense;
RF02564,Bacteria/Mixed,Bacteria (100.0%),"Bacteria (82.35%), Eukaryota (17.65%)",naRNA4,Nucleoid-associated noncoding RNA 4 (CssrE),Gene; sRNA;
RF02565,Bacteria,Bacteria (100.0%),Bacteria (100.0%),YrlB,Y RNA-like,Gene; sRNA;
RF02566,Bacteria,Bacteria (100.0%),Bacteria (100.0%),Ms1,Mycobacterium smegmatis small RNA 1,Gene; sRNA;
RF02567,Bacteria,Bacteria (100.0%),Bacteria (100.0%),Va-907,Vibrio alginolyticus sRNA 907,Gene; sRNA;
RF02568,Bacteria,Bacteria (100.0%),Bacteria (100.0%),UptR,Escherichia coli small RNA (uptR) gene,Gene; sRNA;
RF02569,Bacteria,Bacteria (100.0%),Bacteria (100.0%),IhtA,IhtA sRNA,Gene; sRNA;
RF02570,Bacteria,Bacteria (100.0%),Bacteria (100.0%),BM-sr0117,Brucella melitensis small RNA 0117,Gene; sRNA;
RF02571,Bacteria,Bacteria (100.0%),Bacteria (100.0%),Mcr7,mcr7 sRNA,Gene; sRNA;
RF02572,Bacteria,Bacteria (100.0%),Bacteria (100.0%),babR_5UTR,Brucella babR 5'UTR,Cis-reg;
RF02573,Bacteria,Bacteria (100.0%),Bacteria (100.0%),LLnc147,Lactococcus lactis non-coding RNA 147,Gene; sRNA;
RF02574,Bacteria/Mixed,Bacteria (100.0%),"Bacteria (80.0%), Eukaryota (20.0%)",Ricks_sRNA10,Rickettsia sRNA 10,Gene; sRNA;
RF02576,Bacteria/Mixed,Bacteria (100.0%),"Eukaryota (50.0%), Bacteria (50.0%)",tsr1,tsr1 small RNA,Gene; sRNA;
RF02577,Bacteria,Bacteria (100.0%),"Bacteria (96.33%), Eukaryota (1.83%), Viruses (1.83%)",tsr24,S. aureus tsr24 small RNA,Gene; sRNA;
RF02578,Bacteria,Bacteria (100.0%),Bacteria (100.0%),tsr25,S. aureus tsr25 small RNA,Gene; sRNA;
RF02579,Bacteria,Bacteria (100.0%),Bacteria (100.0%),tsr26,S. aureus tsr26 small RNA,Gene; sRNA;
RF02580,Bacteria,Bacteria (100.0%),Bacteria (100.0%),tsr31,S. aureus tsr31 small RNA,Gene; sRNA;
RF02581,Bacteria,Bacteria (100.0%),Bacteria (100.0%),tsr32,S. aureus tsr32 small RNA,Gene; sRNA;
RF02582,Bacteria,Bacteria (100.0%),Bacteria (100.0%),tsr33,S. aureus tsr33 small RNA,Gene; sRNA;
RF02583,Bacteria,Bacteria (100.0%),Bacteria (100.0%),Teg23,S. aureus Teg23 small RNA,Gene; sRNA;
RF02589,Bacteria/Mixed,Bacteria (100.0%),"Bacteria (69.23%), Viruses (30.77%)",Spy779816,S. pyogenes small RNA 779816,Gene; sRNA;
RF02590,Bacteria,Bacteria (100.0%),Bacteria (100.0%),Spy1186876,S. pyogenes small RNA 1186876,Gene; sRNA;
RF02591,Bacteria,Bacteria (100.0%),Bacteria (100.0%),Spy1786666,S. pyogenes small RNA 1786666,Gene; sRNA;
RF02592,Bacteria,Bacteria (100.0%),Bacteria (100.0%),Spy392987,S. pyogenes antisense RNA 392987,Gene; antisense;
RF02593,Bacteria,Bacteria (100.0%),Bacteria (100.0%),NsiR8,Nitrogen stress-induced RNA 8,Gene; sRNA;
RF02594,Bacteria,Bacteria (100.0%),Bacteria (100.0%),NsiR9,Nitrogen stress-induced RNA 9,Gene; sRNA;
RF02596,Bacteria,Bacteria (100.0%),"Bacteria (96.77%), Eukaryota (3.23%)",cyano_het_sRNA,Cyanobacteria heterocyst sRNA,Gene; sRNA;
RF02597,Bacteria,Bacteria (100.0%),Bacteria (100.0%),shuA_thermo,shuA/chuA 5' UTR thermoregulator,Cis-reg; thermoregulator;
RF02599,Bacteria,Bacteria (100.0%),Bacteria (100.0%),BASRCI408,Brucella sRNA CI408,Gene; sRNA;
RF02600,Bacteria,Bacteria (100.0%),Bacteria (100.0%),BASRCI27,Brucella sRNA CI27,Gene; sRNA;
RF02601,Bacteria,Bacteria (100.0%),Bacteria (100.0%),BASRCI337,Brucella sRNA CI337,Gene; sRNA;
RF02602,Bacteria,Bacteria (100.0%),Bacteria (100.0%),BASRCI414,Brucella sRNA CI414,Gene; sRNA;
RF02603,Bacteria,Bacteria (100.0%),Bacteria (100.0%),BASRCII26,Brucella sRNA CII26,Gene; sRNA;
RF02604,Bacteria,Bacteria (100.0%),Bacteria (100.0%),BASRCI153,Brucella sRNA CI153,Gene; sRNA;
RF02605,Bacteria,Bacteria (100.0%),Bacteria (100.0%),scr5239,Streptomyces sRNA scr5239,Gene; sRNA;
RF02606,Bacteria,Bacteria (100.0%),Bacteria (100.0%),AbsR28,Acinetobacter sRNA 28,Gene; sRNA;
RF02607,Bacteria,Bacteria (100.0%),Bacteria (100.0%),AbsR25,Acinetobacter sRNA 25,Gene; sRNA;
RF02608,Bacteria,Bacteria (100.0%),"Bacteria (96.43%), Eukaryota (3.57%)",AbsR11,Acinetobacter sRNA 11,Gene; sRNA;
RF02609,Bacteria,Bacteria (100.0%),Bacteria (100.0%),BSR0602,Brucella sRNA 0602,Gene; sRNA;
RF02610,Bacteria,Bacteria (100.0%),Bacteria (100.0%),BSR0709,Brucella sRNA 0709,Gene; sRNA;
RF02611,Bacteria,Bacteria (100.0%),Bacteria (100.0%),BSR0653,Brucella sRNA 0653,Gene; sRNA;
RF02612,Bacteria,Bacteria (100.0%),Bacteria (100.0%),BSR1350,Brucella sRNA 1350,Gene; sRNA;
RF02613,Bacteria,Bacteria (100.0%),Bacteria (100.0%),BSR0739,Brucella sRNA 0739,Gene; sRNA;
RF02614,Bacteria,Bacteria (100.0%),Bacteria (100.0%),BSR1073,Brucella sRNA 1073,Gene; sRNA;
RF02615,Bacteria,Bacteria (100.0%),Bacteria (100.0%),BSR0626,Brucella sRNA 0626,Gene; sRNA;
RF02616,Bacteria,Bacteria (100.0%),Bacteria (100.0%),SSRC8_2,Streptococcus sRNA 8,Gene; sRNA;
RF02617,Bacteria,Bacteria (100.0%),Bacteria (100.0%),SSRC10,Streptococcus sRNA 10,Gene; sRNA;
RF02618,Bacteria/Mixed,Bacteria (100.0%),"Bacteria (88.89%), Eukaryota (11.11%)",SSRC34_2,Streptococcus sRNA 34,Gene; sRNA;
RF02619,Bacteria,Bacteria (100.0%),Bacteria (100.0%),BSnc115,Brucella sRNA 115,Gene; sRNA;
RF02620,Bacteria,Bacteria (100.0%),Bacteria (100.0%),BSnc119,Brucella sRNA 119,Gene; sRNA;
RF02621,Bacteria,Bacteria (100.0%),Bacteria (100.0%),BSnc120,Brucella sRNA 120,Gene; sRNA;
RF02622,Bacteria,Bacteria (100.0%),Bacteria (100.0%),BSnc121,Brucella sRNA 121,Gene; sRNA;
RF02623,Bacteria,Bacteria (100.0%),Bacteria (100.0%),BSnc140,Brucella sRNA 140,Gene; sRNA;
RF02624,Bacteria,Bacteria (100.0%),Bacteria (100.0%),BSnc150,Brucella sRNA 150,Gene; sRNA;
RF02625,Bacteria/Mixed,Bacteria (100.0%),"Bacteria (65.6%), Eukaryota (34.4%)",WsnRNA46,Wolbachia sRNA 46,Gene; sRNA;
RF02627,Bacteria,Bacteria (100.0%),Bacteria (100.0%),Ssr1,Shigella small RNA 1,Gene; sRNA;
RF02628,Bacteria,Bacteria (100.0%),"Bacteria (90.0%), Eukaryota (10.0%)",Hrs1,Hfq-regulated sRNA 1,Gene; sRNA;
RF02629,Bacteria,Bacteria (100.0%),Bacteria (100.0%),RmaA,Regulator of motility and amylovoran A,Gene; sRNA;
RF02630,Bacteria,Bacteria (100.0%),Bacteria (100.0%),Hrs12,Hfq-regulated sRNA 12,Gene; sRNA;
RF02631,Bacteria/Mixed,Bacteria (100.0%),"Bacteria (83.33%), Eukaryota (16.67%)",Hrs13,Hfq-regulated sRNA 13,Gene; sRNA;
RF02632,Bacteria,Bacteria (100.0%),Bacteria (100.0%),Hrs10,Hfq-regulated sRNA 10,Gene; sRNA;
RF02633,Bacteria,Bacteria (100.0%),Bacteria (100.0%),Hrs21,Hfq-regulated sRNA 21,Gene; sRNA;
RF02634,Bacteria,Bacteria (100.0%),Bacteria (100.0%),EF3314_EF3315,Enterococcus sRNA EF3314_EF3315,Gene; sRNA;
RF02635,Bacteria,Bacteria (100.0%),Bacteria (100.0%),EF0820_EF0821,Enterococcus sRNA EF0820_EF0821,Gene; sRNA;
RF02636,Bacteria,Bacteria (100.0%),Bacteria (100.0%),EF1368_EF1369,Enterococcus sRNA EF1368_EF1369,Gene; sRNA;
RF02637,Bacteria,Bacteria (100.0%),Bacteria (100.0%),EF0408_EF0409,Enterococcus sRNA EF0408_EF0409,Gene; sRNA;
RF02638,Bacteria,Bacteria (100.0%),Bacteria (100.0%),EF0605_EF0606,Enterococcus sRNA EF0605_EF0606,Gene; sRNA;
RF02639,Bacteria,Bacteria (100.0%),Bacteria (100.0%),EF0869_EF0870,Enterococcus sRNA EF0869_EF0870,Gene; sRNA;
RF02640,Bacteria,Bacteria (100.0%),Bacteria (100.0%),MOSES4,S. pyogenes small RNA MOSES4,Gene; sRNA;
RF02641,Bacteria,Bacteria (100.0%),Bacteria (100.0%),Spy490483c,S. pyogenes small RNA Spy490483c,Gene; sRNA;
RF02642,Bacteria,Bacteria (100.0%),Bacteria (100.0%),Spy491311c,S. pyogenes small RNA Spy491311c,Gene; sRNA;
RF02643,Bacteria,Bacteria (100.0%),Bacteria (100.0%),Spy491738,S. pyogenes small RNA Spy491738,Gene; sRNA;
RF02644,Bacteria,Bacteria (100.0%),Bacteria (100.0%),Spy490380c,S. pyogenes small RNA Spy490380c,Gene; sRNA;
RF02645,Bacteria,Bacteria (100.0%),Bacteria (100.0%),Cis2_sRNA,Ruegeria cis2 sRNA,Gene; sRNA;
RF02646,Bacteria,Bacteria (100.0%),Bacteria (100.0%),Cis8_sRNA,Ruegeria cis8 sRNA,Gene; sRNA;
RF02647,Bacteria,Bacteria (100.0%),"Bacteria (99.33%), Eukaryota (0.67%)",Cis52_sRNA,Ruegeria cis52 sRNA,Gene; sRNA;
RF02648,Bacteria,Bacteria (100.0%),Bacteria (100.0%),Cis90_sRNA,Ruegeria cis90 sRNA,Gene; sRNA;
RF02649,Bacteria,Bacteria (100.0%),Bacteria (100.0%),Trans44_sRNA,Ruegeria trans44 sRNA,Gene; sRNA;
RF02650,Bacteria,Bacteria (100.0%),Bacteria (100.0%),CncR1,Cag non-coding RNA1,Gene; sRNA;
RF02651,Bacteria,Bacteria (100.0%),Bacteria (100.0%),SorY,Singlet oxygen resistance RNA Y,Gene; sRNA;
RF02652,Bacteria,Bacteria (100.0%),Bacteria (100.0%),StyR-3,Salmonella enterica Typhi npcRNA 3,Gene; sRNA;
RF02653,Bacteria,Bacteria (100.0%),Bacteria (100.0%),StyR-143,Salmonella enterica Typhi npcRNA 143,Gene; sRNA;
RF02654,Bacteria,Bacteria (100.0%),"Bacteria (97.3%), Eukaryota (2.7%)",MicL,MicL sRNA,Gene; sRNA;
RF02655,Bacteria,Bacteria (100.0%),Bacteria (100.0%),BSR0441,Brucella BSR0441 sRNA,Gene; sRNA;
RF02659,Bacteria,Bacteria (100.0%),Bacteria (100.0%),ncRv12659,ncRv12659 sRNA,Gene; sRNA;
RF02660,Bacteria,Bacteria (100.0%),Bacteria (100.0%),icaR_3p_UTR,icaR 3'UTR,Cis-reg;
RF02661,Bacteria,Bacteria (100.0%),Bacteria (100.0%),icaR_5p_UTR,icaR 5' UTR,Cis-reg;
RF02662,Bacteria,Bacteria (100.0%),Bacteria (100.0%),BLi_r0872,Bacillus asRNA 0872,Gene; antisense;
RF02671,Bacteria,Bacteria (100.0%),Bacteria (100.0%),Ysr35,Yersinia sRNA 35,Gene; sRNA;
RF02672,Bacteria/Mixed,Bacteria (100.0%),"Viruses (88.24%), Bacteria (11.76%)",SprX,Small pathogenicity island RNA X,Gene; sRNA;
RF02673,Bacteria,Bacteria (100.0%),Bacteria (100.0%),scr4677,Streptomyces sRNA 4677,Gene; sRNA;
RF02674,Bacteria,Bacteria (100.0%),"Bacteria (95.28%), Eukaryota (4.72%)",AsdA,antisense RNA of dnaA mRNA,Gene; antisense;
RF02675,Bacteria,Bacteria (100.0%),Bacteria (100.0%),Ysr141,Yersinia sRNA 141,Gene; sRNA;
RF02676,Bacteria,Bacteria (100.0%),Bacteria (100.0%),Esr41,Enterohemorrhagic E. coli sRNA 41,Gene; sRNA;
RF02677,Bacteria,Bacteria (100.0%),Bacteria (100.0%),NsiR4,Nitrogen stress-induced RNA 4,Gene; sRNA;
RF02679,Bacteria/Mixed,"unclassified sequences (64.44%), Bacteria (35.56%)","Bacteria (48.0%), unclassified sequences (38.67%), Viruses (12.0%), Eukaryota (1.33%)",Pistol,Pistol ribozyme,Gene; ribozyme;
RF02680,Bacteria,"Bacteria (54.84%), unclassified sequences (45.16%)","unclassified sequences (85.39%), Bacteria (14.61%)",PreQ1-III,PreQ1-III riboswitch,Cis-reg; riboswitch;
RF02682,Bacteria/Eukaryota,"Bacteria (56.25%), unclassified sequences (43.75%)","Eukaryota (97.35%), Bacteria (1.97%), unclassified sequences (0.69%)",HDV-F-prausnitzii,HDV ribozyme from F. prausnitzii,Gene; ribozyme;
RF02685,Bacteria,"Bacteria (56.41%), unclassified sequences (43.59%)","Bacteria (70.69%), unclassified sequences (29.31%)",RAGATH-5,RAGATH-5 RNA,Gene; ribozyme;
RF02688,Bacteria,Bacteria (100.0%),Bacteria (100.0%),RAGATH-13,RAGATH-13 RNA,Gene; ribozyme;
RF02689,Bacteria,Bacteria (100.0%),Bacteria (100.0%),hilD_3p_UTR,hilD 3'UTR,Cis-reg;
RF02690,Bacteria,Bacteria (100.0%),Bacteria (100.0%),BTH_s1,Burkholderia sRNA 1,Gene; sRNA;
RF02691,Bacteria,Bacteria (100.0%),Bacteria (100.0%),BTH_s19,Burkholderia sRNA 19,Gene; sRNA;
RF02692,Bacteria,Bacteria (100.0%),Bacteria (100.0%),BTH_s39,Burkholderia sRNA 39,Gene; sRNA;
RF02693,Bacteria,Bacteria (100.0%),Bacteria (100.0%),psm_mec_RNA,psm_mec locus RNA,Gene; sRNA;
RF02694,Bacteria,Bacteria (100.0%),Bacteria (100.0%),RalA,RalR antitoxin,Gene; sRNA;
RF02695,Bacteria,Bacteria (100.0%),Bacteria (100.0%),NrsZ,Nitrogen regulated small RNA,Gene; sRNA;
RF02696,Bacteria,Bacteria (100.0%),Bacteria (100.0%),Teg49,Teg49 sRNA,Gene; sRNA;
RF02698,Bacteria,Bacteria (100.0%),Bacteria (100.0%),Avalong_thermometer,Avalong 5' UTR thermometer,Cis-reg; thermoregulator;
RF02699,Bacteria,Bacteria (100.0%),Bacteria (100.0%),Avashort_thermometer,Avashort 5' UTR thermometer,Cis-reg; thermoregulator;
RF02700,Bacteria,Bacteria (100.0%),Bacteria (100.0%),HtrA_thermometer,HtrA 5' UTR thermometer,Cis-reg; thermoregulator;
RF02701,Bacteria,Bacteria (100.0%),Bacteria (100.0%),PsrR1,Photosynthesis regulatory RNA1,Gene; sRNA;
RF02702,Bacteria/Mixed,Bacteria (100.0%),"Viruses (50.0%), Bacteria (50.0%)",AgvB,Anti GcvB sRNA,Gene; sRNA;
RF02703,Bacteria/Mixed,Bacteria (100.0%),"Viruses (81.82%), Bacteria (18.18%)",AsxR,Anti stx2 sRNA,Gene; sRNA;
RF02704,Bacteria,Bacteria (100.0%),Bacteria (100.0%),LcrF_thermometer,LcrF intergenic thermometer,Cis-reg; thermoregulator;
RF02713,Bacteria,Bacteria (100.0%),Bacteria (100.0%),MCS4,Mycoplasma sRNA MCS4,Gene; sRNA;
RF02728,Bacteria,Bacteria (100.0%),Bacteria (100.0%),HrrF,Haemophilus regulatory RNA responsive to iron,Gene; sRNA;
RF02729,Bacteria,Bacteria (100.0%),Bacteria (100.0%),JA01,Aggregatibacter sRNA JA01,Gene; sRNA;
RF02730,Bacteria/Mixed,Bacteria (100.0%),"Bacteria (83.33%), Eukaryota (16.67%)",JA02,Aggregatibacter sRNA JA02,Gene; sRNA;
RF02731,Bacteria,Bacteria (100.0%),"Bacteria (93.75%), Eukaryota (6.25%)",JA03,Aggregatibacter sRNA JA03,Gene; sRNA;
RF02732,Bacteria,Bacteria (100.0%),Bacteria (100.0%),JA04,Aggregatibacter sRNA JA04,Gene; sRNA;
RF02733,Bacteria,Bacteria (100.0%),Bacteria (100.0%),ToxT_thermometer,ToxT 5' UTR thermometer,Cis-reg; thermoregulator;
RF02734,Bacteria,Bacteria (100.0%),Bacteria (100.0%),Cgb105,Corynebacterium sRNA 105,Gene; sRNA;
RF02735,Bacteria,Bacteria (100.0%),"Bacteria (99.57%), Eukaryota (0.43%)",Sernc350,Saccharopolyspora sRNA 350,Gene; antisense; 
RF02736,Bacteria,Bacteria (100.0%),"Bacteria (93.88%), Eukaryota (6.12%)",Rev11,Soft rot Enterobacteriaceae Rev 11 asRNA,Gene; antisense; 
RF02737,Bacteria,Bacteria (100.0%),Bacteria (100.0%),Rev13,Soft rot Enterobacteriaceae Rev 13 asRNA,Gene; antisense;
RF02738,Bacteria,Bacteria (100.0%),Bacteria (100.0%),Rev24,Soft rot Enterobacteriaceae Rev 24 asRNA,Gene; antisense;
RF02739,Bacteria,Bacteria (100.0%),Bacteria (100.0%),Rev41,Soft rot Enterobacteriaceae Rev 41 sRNA,Gene; sRNA;
RF02740,Bacteria,Bacteria (100.0%),Bacteria (100.0%),Fwd6_3p_UTR,Soft rot Enterobacteriaceae Fwd 6 3'UTR,Cis-reg; 
RF02741,Bacteria,Bacteria (100.0%),Bacteria (100.0%),Rev44,Soft rot Enterobacteriaceae Rev 44 asRNA,Gene; antisense; 
RF02742,Bacteria,Bacteria (100.0%),Bacteria (100.0%),Rev72,Soft rot Enterobacteriaceae Rev 72 asRNA,Gene; antisense;
RF02743,Bacteria,Bacteria (100.0%),"Bacteria (91.43%), Viruses (8.57%)",Sernc389,Saccharopolyspora sRNA 389,Gene; antisense;
RF02744,Bacteria,Bacteria (100.0%),"Bacteria (94.87%), Eukaryota (5.13%)",Rev39_5p_UTR,Soft rot Enterobacteriaceae Rev 39 5'UTR,Cis-reg;
RF02745,Bacteria,Bacteria (100.0%),Bacteria (100.0%),Rev42_5p_UTR,Soft rot Enterobacteriaceae Rev 42 5'UTR,Cis-reg;
RF02746,Bacteria,Bacteria (100.0%),"Bacteria (98.53%), Eukaryota (1.47%)",AsrC,antisense RNA of rseC mRNA,Gene; antisense; 
RF02747,Bacteria,Bacteria (100.0%),Bacteria (100.0%),FtrA,Francisella sRNA A,Gene; sRNA;
RF02748,Bacteria,Bacteria (100.0%),Bacteria (100.0%),FtrB,Francisella sRNA B,Gene; sRNA;
RF02749,Bacteria/Mixed,Bacteria (100.0%),"Eukaryota (50.0%), Bacteria (50.0%)",Ncrwmel02,Wolbachia sRNA mel02,Gene; sRNA;
RF02750,Bacteria,Bacteria (100.0%),"Bacteria (91.67%), Eukaryota (8.33%)",ES003,ES003 sRNA,Gene; sRNA;
RF02751,Bacteria/Mixed,Bacteria (100.0%),"Bacteria (82.0%), Eukaryota (18.0%)",ES036,ES036 (CssrF) sRNA,Gene; sRNA;
RF02752,Bacteria,Bacteria (100.0%),Bacteria (100.0%),ES056,ES056 sRNA,Gene; sRNA;
RF02753,Bacteria,Bacteria (100.0%),Bacteria (100.0%),ES173,ES173 sRNA,Gene; sRNA;
RF02754,Bacteria/Mixed,Bacteria (100.0%),"Bacteria (66.67%), Eukaryota (33.33%)",ES205,ES205 sRNA,Gene; sRNA;
RF02755,Bacteria,Bacteria (100.0%),"Bacteria (95.83%), Eukaryota (4.17%)",ES222,ES222 sRNA,Gene; sRNA;
RF02756,Bacteria/Mixed,Bacteria (100.0%),"Bacteria (66.67%), Eukaryota (33.33%)",ES239,ES239 sRNA,Gene; sRNA;
RF02757,Bacteria,Bacteria (100.0%),"Bacteria (97.14%), Eukaryota (2.86%)",Erse,Erse small RNA,Gene; sRNA;
RF02758,Bacteria,Bacteria (100.0%),Bacteria (100.0%),RhlA_thermometer,RhlA 5' UTR ROSE like thermometer,Cis-reg; thermoregulator;
RF02759,Bacteria,Bacteria (100.0%),Bacteria (100.0%),LasI_thermometer,LasI 5' UTR ROSE like thermometer,Cis-reg; thermoregulator;
RF02760,Bacteria,Bacteria (100.0%),Bacteria (100.0%),sR035,sR035 sRNA,Gene; sRNA;
RF02761,Bacteria,Bacteria (100.0%),Bacteria (100.0%),sR084,sR084 sRNA,Gene; sRNA;
RF02762,Bacteria/Mixed,Bacteria (100.0%),"Bacteria (75.0%), Eukaryota (25.0%)",C1_109596F_thermometer,C1_109596F  5' UTR thermometer,Cis-reg; thermoregulator;
RF02763,Bacteria,Bacteria (100.0%),Bacteria (100.0%),IsrM,IsrM sRNA,Gene; sRNA;
RF02764,Bacteria,Bacteria (100.0%),"Bacteria (92.31%), Eukaryota (7.69%)",Ysr190,Yersinia sRNA 190,Gene; sRNA;
RF02765,Bacteria,Bacteria (100.0%),Bacteria (100.0%),Ysr209,Yersinia sRNA 209,Gene; sRNA;
RF02766,Bacteria,Bacteria (100.0%),Bacteria (100.0%),Ysr49,Yersinia sRNA 49,Gene; sRNA;
RF02767,Bacteria,Bacteria (100.0%),Bacteria (100.0%),Ysr186_sR026_CsrC,Yersinia sRNA 186/sR026/CsrC,Gene; sRNA;
RF02768,Bacteria,Bacteria (100.0%),"Bacteria (94.23%), Eukaryota (5.77%)",Ysr155_RyfD,Yersinia sRNA 155(RyfD),Gene; sRNA;
RF02769,Bacteria,Bacteria (100.0%),Bacteria (100.0%),Ysr202,Yersinia sRNA 202,Gene; sRNA;
RF02770,Bacteria,Bacteria (100.0%),Bacteria (100.0%),Ysr224,Yersinia sRNA 224,Gene; sRNA;
RF02771,Bacteria,Bacteria (100.0%),Bacteria (100.0%),CnfY_thermometer,CnfY 5' UTR thermometer,Cis-reg; thermoregulator;
RF02772,Bacteria,Bacteria (100.0%),Bacteria (100.0%),AilA_thermometer,AilA 5' UTR thermometer,Cis-reg; thermoregulator;
RF02773,Bacteria,Bacteria (100.0%),"Bacteria (95.71%), Eukaryota (4.29%)",TrxA_thermometer,TrxA 5' UTR thermometer,Cis-reg; thermoregulator;
RF02774,Bacteria,Bacteria (100.0%),Bacteria (100.0%),KatA_thermometer,KatA 5' UTR thermometer,Cis-reg; thermoregulator;
RF02775,Bacteria,Bacteria (100.0%),Bacteria (100.0%),SodB_thermometer,SodB 5' UTR thermometer,Cis-reg; thermoregulator;
RF02776,Bacteria,Bacteria (100.0%),Bacteria (100.0%),SodC_thermometer,SodC 5' UTR thermometer,Cis-reg; thermoregulator;
RF02777,Bacteria,Bacteria (100.0%),Bacteria (100.0%),OppA_thermometer,OppA 5' UTR thermometer,Cis-reg; thermoregulator;
RF02778,Bacteria/Mixed,Bacteria (100.0%),"Bacteria (83.33%), Eukaryota (16.67%)",FdoG1_thermometer,FdoG-1 5' UTR thermometer,Cis-reg; thermoregulator;
RF02779,Bacteria,Bacteria (100.0%),Bacteria (100.0%),PepN_thermometer,PepN 5' UTR thermometer,Cis-reg; thermoregulator;
RF02780,Bacteria,Bacteria (100.0%),Bacteria (100.0%),PutA_thermometer,PutA 5' UTR thermometer,Cis-reg; thermoregulator;
RF02781,Bacteria,Bacteria (100.0%),Bacteria (100.0%),ManX_thermometer,ManX 5' UTR thermometer,Cis-reg; thermoregulator;
RF02782,Bacteria,Bacteria (100.0%),"Bacteria (96.55%), Eukaryota (3.45%)",CpoB_ybgF_thermometer,CpoB/ybgF ICR thermometer,Cis-reg; thermoregulator; 
RF02783,Bacteria,Bacteria (100.0%),Bacteria (100.0%),IscS1_thermometer,IscS-1 ICR thermometer,Cis-reg; thermoregulator; 
RF02784,Bacteria,Bacteria (100.0%),Bacteria (100.0%),SorX,Singlet oxygen resistance RNA X,Gene; sRNA;
RF02790,Bacteria,Bacteria (100.0%),Bacteria (100.0%),sodF_sRNA,sodF sRNA,Gene; sRNA;
RF02791,Bacteria,Bacteria (100.0%),Bacteria (100.0%),CcsR1,Conserved CCUCCUCCC motif stress-induced RNA 1,Gene; sRNA;
RF02797,Bacteria,Bacteria (100.0%),"Bacteria (97.73%), Eukaryota (2.27%)",PssrA,Plasmid-encoded Shigella sRNA A,Gene; sRNA;
RF02798,Bacteria,Bacteria (100.0%),Bacteria (100.0%),CssrA,Chromosome-encoded Shigella sRNA A,Gene; sRNA;
RF02799,Bacteria,Bacteria (100.0%),Bacteria (100.0%),CssrB,Chromosome-encoded Shigella sRNA B,Gene; sRNA;
RF02800,Bacteria,Bacteria (100.0%),"Bacteria (93.1%), Eukaryota (3.45%), Archaea (3.45%)",Rp_sR47,Rickettsia sRNA47,Gene; sRNA;
RF02809,Bacteria,Bacteria (100.0%),Bacteria (100.0%),RsmW,RsmW RNA family,Gene; sRNA;
RF02810,Bacteria,Bacteria (100.0%),Bacteria (100.0%),Lst_thermometer,Lst 5' UTR thermometer,Cis-reg; thermoregulator;
RF02811,Bacteria,Bacteria (100.0%),Bacteria (100.0%),FHbp_thermometer,FHbp 5' UTR thermometer,Cis-reg; thermoregulator;
RF02812,Bacteria,Bacteria (100.0%),"Bacteria (98.68%), Eukaryota (1.32%)",asponA,anti ponA RNA,Gene; antisense;
RF02813,Bacteria,Bacteria (100.0%),Bacteria (100.0%),PA5194_thermometer,Pseudomonas PA5194 thermometer,Cis-reg; thermoregulator;
RF02815,Bacteria,Bacteria (100.0%),Bacteria (100.0%),Lig_thermometer,Lig 5' UTR thermometer,Cis-reg; thermoregulator;
RF02818,Bacteria,Bacteria (100.0%),Bacteria (100.0%),V_AS5,Vibrio RNA AS5,Gene; antisense;
RF02819,Bacteria,Bacteria (100.0%),Bacteria (100.0%),V_AS7,Vibrio RNA AS7,Gene; antisense;
RF02820,Bacteria,Bacteria (100.0%),"Bacteria (99.22%), Archaea (0.78%)",V_AS9,Vibrio RNA AS9,Gene; antisense;
RF02821,Bacteria,Bacteria (100.0%),Bacteria (100.0%),V_IGR5,Vibrio RNA IGR5,Gene; sRNA;
RF02822,Bacteria,Bacteria (100.0%),Bacteria (100.0%),Srn266,Streptococcus RNA 266,Gene; sRNA;
RF02823,Bacteria,Bacteria (100.0%),Bacteria (100.0%),LPR69,Legionella RNA 69,Gene; sRNA;
RF02824,Bacteria,Bacteria (100.0%),Bacteria (100.0%),LPR10,Legionella RNA 10,Gene; sRNA;
RF02825,Bacteria,Bacteria (100.0%),Bacteria (100.0%),LPR17,Legionella RNA 17,Gene; sRNA;
RF02826,Bacteria,Bacteria (100.0%),Bacteria (100.0%),Scr6925,Streptomyces RNA 6925,Gene; sRNA;
RF02827,Bacteria,Bacteria (100.0%),Bacteria (100.0%),Scr6106,Streptomyces RNA 6106,Gene; sRNA;
RF02828,Bacteria,Bacteria (100.0%),Bacteria (100.0%),Scr3920,Streptomyces RNA 3920,Gene; sRNA;
RF02829,Bacteria,Bacteria (100.0%),Bacteria (100.0%),Scr4115,Streptomyces RNA 4115,Gene; sRNA;
RF02830,Bacteria,Bacteria (100.0%),Bacteria (100.0%),Scr1601,Streptomyces RNA 1601,Gene; sRNA;
RF02831,Bacteria,Bacteria (100.0%),Bacteria (100.0%),Scr2736,Streptomyces RNA 2736,Gene; sRNA;
RF02832,Bacteria,Bacteria (100.0%),Bacteria (100.0%),Scr5676,Streptomyces RNA 5676,Gene; sRNA;
RF02833,Bacteria,Bacteria (100.0%),Bacteria (100.0%),Scr3202,Streptomyces RNA 3202,Gene; sRNA;
RF02834,Bacteria,Bacteria (100.0%),Bacteria (100.0%),VqmR,Vibrio RNA VqmR,Gene; sRNA;
RF02835,Bacteria,Bacteria (100.0%),"Bacteria (99.36%), Eukaryota (0.64%)",Bcj11,Burkholderia RNA 11,Gene; sRNA;
RF02836,Bacteria,Bacteria (100.0%),Bacteria (100.0%),Bcj14,Burkholderia RNA 14,Gene; sRNA;
RF02837,Bacteria,Bacteria (100.0%),"Bacteria (99.12%), Eukaryota (0.88%)",anti-hemB,Burkholderia RNA 7 (anti-hemB),Gene; sRNA;
RF02838,Bacteria/Mixed,Bacteria (100.0%),"Bacteria (84.62%), Viruses (15.38%)",Ref55,Enterococcus sRNA 55,Gene; sRNA;
RF02839,Bacteria,Bacteria (100.0%),Bacteria (100.0%),Ref66,Enterococcus sRNA 66,Gene; antisense;
RF02840,Bacteria,"Bacteria (79.49%), unclassified sequences (20.51%)","Bacteria (92.12%), unclassified sequences (7.88%)",Ref68,Enterococcus sRNA 68 (Lacto-3 RNA),Gene; sRNA;
RF02841,Bacteria,Bacteria (100.0%),Bacteria (100.0%),Ref70,Enterococcus sRNA 70,Gene; sRNA;
RF02842,Bacteria,Bacteria (100.0%),Bacteria (100.0%),RefA1,Enterococcus sRNA A1,Gene; sRNA;
RF02843,Bacteria,Bacteria (100.0%),Bacteria (100.0%),RefA5,Enterococcus sRNA A5,Gene; antisense;
RF02844,Bacteria,Bacteria (100.0%),Bacteria (100.0%),RefA9,Enterococcus sRNA A9,Gene; antisense;
RF02845,Bacteria,Bacteria (100.0%),Bacteria (100.0%),Ref1C,Enterococcus sRNA 1C,Gene; sRNA;
RF02846,Bacteria,Bacteria (100.0%),Bacteria (100.0%),Ref84,Enterococcus sRNA 84,Gene; antisense;
RF02847,Bacteria,Bacteria (100.0%),Bacteria (100.0%),Ref64,Enterococcus sRNA 64,Gene; sRNA;
RF02848,Bacteria,Bacteria (100.0%),"Bacteria (93.02%), Viruses (6.98%)",RefB11,Enterococcus sRNA B11,Gene; sRNA;
RF02849,Bacteria,Bacteria (100.0%),Bacteria (100.0%),Ysr197,Yersinia sRNA 197,Gene; sRNA;
RF02850,Bacteria,Bacteria (100.0%),"Bacteria (95.62%), Eukaryota (4.38%)",Ysr276,Yersinia sRNA 276,Gene; antisense;
RF02851,Bacteria,Bacteria (100.0%),Bacteria (100.0%),Ysr283,Yersinia sRNA 283,Gene; antisense;
RF02852,Bacteria,Bacteria (100.0%),Bacteria (100.0%),Ysr206,Yersinia sRNA 206,Gene; sRNA;
RF02853,Bacteria,Bacteria (100.0%),Bacteria (100.0%),Ysr201,Yersinia sRNA 201,Gene; sRNA;
RF02854,Bacteria,Bacteria (100.0%),Bacteria (100.0%),Ysr100,Yersinia sRNA 100,Gene; sRNA;
RF02855,Bacteria,Bacteria (100.0%),"Bacteria (90.91%), Eukaryota (8.08%), Viruses (1.01%)",Ysr251,Yersinia sRNA 251,Gene; antisense;
RF02856,Bacteria,Bacteria (100.0%),Bacteria (100.0%),30_292,Leptospira sRNA 30_292,Gene; sRNA;
RF02857,Bacteria,Bacteria (100.0%),Bacteria (100.0%),30_255,Leptospira sRNA 30_255,Gene; sRNA;
RF02858,Bacteria,Bacteria (100.0%),Bacteria (100.0%),Arrc08,Actinobacillus sRNA 08,Gene; sRNA;
RF02859,Bacteria,Bacteria (100.0%),Bacteria (100.0%),Arrc11,Actinobacillus sRNA 11,Gene; sRNA;
RF02860,Bacteria,Bacteria (100.0%),Bacteria (100.0%),Arrc14,Actinobacillus sRNA 14,Gene; sRNA;
RF02861,Bacteria,Bacteria (100.0%),Bacteria (100.0%),IR_84,Neisseria sRNA 84,Gene; sRNA;
RF02862,Bacteria,Bacteria (100.0%),Bacteria (100.0%),sRNA_1300,Enterococcus sRNA 1300,Gene; sRNA;
RF02863,Bacteria,Bacteria (100.0%),Bacteria (100.0%),sRNA_2410,Enterococcus sRNA 2410,Gene; sRNA;
RF02864,Bacteria,Bacteria (100.0%),Bacteria (100.0%),sRNA_0030,Enterococcus sRNA 30,Gene; sRNA;
RF02865,Bacteria,Bacteria (100.0%),Bacteria (100.0%),ncS01,Burkholderia sRNA 1,Gene; sRNA;
RF02866,Bacteria,Bacteria (100.0%),Bacteria (100.0%),ncS16,Burkholderia sRNA 16 (Bc_KC_sr1),Gene; sRNA;
RF02867,Bacteria,Bacteria (100.0%),Bacteria (100.0%),ncS011,Burkholderia sRNA 11,Gene; sRNA;
RF02868,Bacteria,Bacteria (100.0%),Bacteria (100.0%),ncS037,Burkholderia sRNA 37,Gene; sRNA;
RF02869,Mixed/Bacteria,"Bacteria (75.0%), Eukaryota (25.0%)","Bacteria (98.21%), Eukaryota (1.79%)",ncS025,Burkholderia sRNA 25,Gene; sRNA;
RF02870,Bacteria,Bacteria (100.0%),Bacteria (100.0%),ncS035,Burkholderia sRNA 35,Gene; sRNA;
RF02871,Bacteria,Bacteria (100.0%),"Bacteria (98.95%), Eukaryota (1.05%)",ncS54,Burkholderia sRNA 54,Gene; sRNA;
RF02872,Bacteria,Bacteria (100.0%),"Bacteria (98.36%), Eukaryota (1.64%)",SrbA,sRNA regulator of biofilms A,Gene; sRNA;
RF02873,Bacteria/Mixed,Bacteria (100.0%),"Bacteria (75.0%), Eukaryota (25.0%)",AS-traI,Antisense to traI,Gene; antisense;
RF02875,Bacteria,Bacteria (100.0%),Bacteria (100.0%),AS-pc01,Antisense to pHK01_035,Gene; antisense;
RF02876,Bacteria/Mixed,Bacteria (100.0%),"Bacteria (75.0%), Eukaryota (25.0%)",AS-pc02,Antisense to pHK01_099,Gene; antisense;
RF02877,Bacteria,Bacteria (100.0%),Bacteria (100.0%),NmsRb,Neisseria metabolic switch regulator b (RcoF1/NgncR163),Gene; sRNA;
RF02878,Bacteria,Bacteria (100.0%),Bacteria (100.0%),MH_s7,Mesorhizobail RNA 7,Gene; sRNA;
RF02879,Bacteria,Bacteria (100.0%),Bacteria (100.0%),MH_s10,Mesorhizobail RNA 10,Gene; sRNA;
RF02880,Bacteria,Bacteria (100.0%),Bacteria (100.0%),MH_s15,Mesorhizobail RNA 15,Gene; sRNA;
RF02881,Bacteria,Bacteria (100.0%),Bacteria (100.0%),MH_s25,Mesorhizobail RNA 25,Gene; sRNA;
RF02882,Bacteria,Bacteria (100.0%),Bacteria (100.0%),MH_s36,Mesorhizobail RNA 36,Gene; sRNA;
RF02883,Bacteria,Bacteria (100.0%),Bacteria (100.0%),BcKCsr2,Burkholderia sRNA 2,Gene; sRNA;
RF02884,Bacteria,Bacteria (100.0%),Bacteria (100.0%),BcKCsr7,Burkholderia sRNA 7,Gene; sRNA;
RF02885,Bacteria,Bacteria (100.0%),"Bacteria (93.75%), unclassified sequences (6.25%)",SAM_VI,SAM-VI riboswitch,Cis-reg; riboswitch;
RF02886,Bacteria,Bacteria (100.0%),Bacteria (100.0%),npcTB_6715,Mycobacterium sRNA 6715,Gene; sRNA;
RF02887,Bacteria,Bacteria (100.0%),"Bacteria (96.67%), Eukaryota (3.33%)",mgtC_leader,Salmonella mgtC leader RNA,Cis-reg; leader;
RF02888,Bacteria,Bacteria (100.0%),Bacteria (100.0%),BtsR1,Bacillus sRNA 1,Gene; sRNA;
RF02889,Bacteria,Bacteria (100.0%),Bacteria (100.0%),Sr006,Pseudomonas sRNA 6,Gene; sRNA;
RF02890,Bacteria,Bacteria (100.0%),Bacteria (100.0%),SprC,Small pathogenicity island RNA C (srn_3610),Gene; sRNA;
RF02891,Bacteria/Mixed,Bacteria (100.0%),"Bacteria (84.62%), Eukaryota (15.38%)",AgrB,ArsR-gov region gene B,Gene; antisense;
RF02893,Bacteria,Bacteria (100.0%),"Bacteria (98.21%), Eukaryota (1.79%)",RpsF_leader,RpsF leader,Cis-reg; leader;
RF02894,Bacteria,Bacteria (100.0%),Bacteria (100.0%),S35,Staphylococcus sRNA 35 (srn_0335),Gene; sRNA;
RF02895,Bacteria,Bacteria (100.0%),Bacteria (100.0%),S414,Staphylococcus sRNA 414,Gene; sRNA;
RF02896,Bacteria,Bacteria (100.0%),Bacteria (100.0%),S774,Staphylococcus sRNA 774,Gene; sRNA;
RF02898,Bacteria,Bacteria (100.0%),"Bacteria (96.88%), Eukaryota (3.13%)",AaHKsRNA20,Aggregatibacter sRNA 20,Gene; sRNA;
RF02899,Bacteria,Bacteria (100.0%),Bacteria (100.0%),AaHKsRNA54,Aggregatibacter sRNA 54,Gene; sRNA;
RF02900,Bacteria,Bacteria (100.0%),"Bacteria (92.86%), Viruses (7.14%)",AaHKsRNA82,Aggregatibacter sRNA 82,Gene; sRNA;
RF02901,Bacteria,Bacteria (100.0%),Bacteria (100.0%),AaHKsRNA41,Aggregatibacter sRNA 41,Gene; sRNA;
RF02902,Bacteria,Bacteria (100.0%),Bacteria (100.0%),AaHKsRNA22,Aggregatibacter sRNA 22,Gene; sRNA;
RF02903,Bacteria,Bacteria (100.0%),Bacteria (100.0%),AaHKsRNA96,Aggregatibacter sRNA 96,Gene; antisense;
RF02904,Bacteria,Bacteria (100.0%),Bacteria (100.0%),AaHKsRNA69,Aggregatibacter sRNA 69,Gene; sRNA;
RF02907,Bacteria,Bacteria (100.0%),Bacteria (100.0%),patAB,patAB leader,Cis-reg; leader;
RF02908,Bacteria,Bacteria (100.0%),Bacteria (100.0%),rli30,Listeria sRNA rli30,Gene; antisense; 
RF02909,Bacteria,Bacteria (100.0%),Bacteria (100.0%),rli117,Listeria sRNA rli117,Gene; sRNA;
RF02912,Bacteria,Bacteria (100.0%),"Bacteria (96.55%), Eukaryota (3.45%)",AAC_AAD_leader,putative aminoglycoside riboswitch / attI site,Cis-reg; riboswitch;
RF02913,Bacteria/Mixed,"unclassified sequences (81.78%), Bacteria (18.22%)","unclassified sequences (55.1%), Bacteria (44.85%), Eukaryota (0.04%)",pemK,pemK RNA,Cis-reg;
RF02914,Bacteria/Mixed,"unclassified sequences (87.32%), Bacteria (12.68%)","unclassified sequences (53.41%), Bacteria (45.41%), Eukaryota (1.13%), Archaea (0.05%)",DUF805b,DUF805b RNA,Cis-reg;
RF02916,Bacteria,"Bacteria (75.0%), unclassified sequences (25.0%)","Bacteria (88.75%), unclassified sequences (11.25%)",atpB,atpB RNA,Cis-reg;
RF02917,Bacteria/Mixed,"unclassified sequences (57.89%), Bacteria (42.11%)","Bacteria (55.56%), unclassified sequences (40.74%), Eukaryota (3.7%)",Burkholderiales-2,Burkholderiales-2 RNA,Cis-reg;
RF02918,unclassified sequences/Bacteria,"unclassified sequences (93.33%), Bacteria (6.67%)","unclassified sequences (58.33%), Bacteria (41.67%)",MDR-NUDIX,MDR-NUDIX RNA,Cis-reg;
RF02919,Bacteria,"unclassified sequences (89.29%), Bacteria (10.71%)","unclassified sequences (73.53%), Bacteria (26.47%)",ilvB-OMG,ilvB-OMG RNA,Cis-reg;
RF02920,Bacteria/Mixed,"unclassified sequences (53.85%), Bacteria (46.15%)","Bacteria (63.64%), unclassified sequences (31.82%), Eukaryota (4.55%)",Fusobacteriales-1,Fusobacteriales-1 RNA,Cis-reg;
RF02921,Bacteria/Mixed,"unclassified sequences (86.71%), Bacteria (13.29%)","unclassified sequences (63.59%), Bacteria (35.38%), Viruses (0.51%), Archaea (0.51%)",RT-14,RT-14 RNA,Gene; sRNA;
RF02922,Bacteria,Bacteria (100.0%),Bacteria (100.0%),RAGATH-32,RAGATH-32 RNA,Cis-reg;
RF02923,Bacteria,"unclassified sequences (83.33%), Bacteria (16.67%)","unclassified sequences (71.43%), Bacteria (28.57%)",HTH-XRE,HTH-XRE RNA,Cis-reg;
RF02924,Bacteria/Mixed,"unclassified sequences (79.03%), Bacteria (20.97%)","unclassified sequences (70.48%), Bacteria (28.46%), Viruses (0.69%), Eukaryota (0.38%)",skipping-rope,skipping-rope RNA,Gene; sRNA;
RF02925,Bacteria,"unclassified sequences (78.39%), Bacteria (21.61%)","unclassified sequences (73.04%), Bacteria (26.96%)",6A,6A RNA,Gene; sRNA;
RF02926,Bacteria,"unclassified sequences (83.52%), Bacteria (16.48%)","unclassified sequences (79.17%), Bacteria (20.83%)",DUF2693-FD,DUF2693-FD RNA,Gene; sRNA;
RF02927,Bacteria/Mixed,"unclassified sequences (66.67%), Bacteria (33.33%)","unclassified sequences (53.33%), Bacteria (40.0%), Eukaryota (6.67%)",Actino-ugpB,Actino-ugpB RNA,Gene; sRNA;
RF02928,Bacteria,"unclassified sequences (86.86%), Bacteria (13.14%)","unclassified sequences (72.28%), Bacteria (27.72%)",Actinomyces-1,Actinomyces-1 RNA,Gene; sRNA;
RF02929,Bacteria,"Bacteria (92.89%), unclassified sequences (7.11%)","Bacteria (92.79%), unclassified sequences (6.82%), Eukaryota (0.39%)",algC,algC RNA,Cis-reg;
RF02930,Bacteria,"unclassified sequences (84.48%), Bacteria (15.52%)","unclassified sequences (59.76%), Bacteria (40.24%)",aspS,aspS RNA,Cis-reg;
RF02931,Bacteria/Mixed,"Bacteria (80.0%), unclassified sequences (20.0%)","Bacteria (80.39%), unclassified sequences (18.95%), Viruses (0.65%)",Bacilli-1,Bacilli-1 RNA,Gene; sRNA;
RF02932,Bacteria/Mixed,"unclassified sequences (79.41%), Bacteria (20.59%)","unclassified sequences (62.79%), Bacteria (36.43%), Eukaryota (0.78%)",Betaproteobacteria-1,Betaproteobacteria-1 RNA,Gene; sRNA;
RF02934,Bacteria,"unclassified sequences (57.14%), Bacteria (42.86%)","Bacteria (55.56%), unclassified sequences (44.44%)",caiA,caiA RNA,Gene; sRNA;
RF02935,Bacteria,"Bacteria (94.9%), unclassified sequences (5.1%)","Bacteria (98.24%), unclassified sequences (1.76%)",che1,che1 RNA,Gene; sRNA;
RF02936,Bacteria,"unclassified sequences (50.0%), Bacteria (50.0%)","Bacteria (60.0%), unclassified sequences (40.0%)",Chloroflexus-1,Chloroflexus-1 RNA,Gene; sRNA;
RF02937,Bacteria,"unclassified sequences (50.0%), Bacteria (50.0%)","Bacteria (85.71%), unclassified sequences (14.29%)",Clostridiales-2,Clostridiales-2 RNA,Gene; sRNA;
RF02938,Bacteria,"unclassified sequences (52.08%), Bacteria (47.92%)","Bacteria (63.24%), unclassified sequences (36.76%)",COG2827,COG2827 RNA,Gene; sRNA;
RF02940,Bacteria,"Bacteria (80.95%), unclassified sequences (19.05%)","Bacteria (94.51%), unclassified sequences (4.88%), Eukaryota (0.61%)",COG3860,COG3860 RNA,Cis-reg;
RF02942,Bacteria,"unclassified sequences (89.81%), Bacteria (10.19%)","unclassified sequences (81.5%), Bacteria (18.5%)",Clostridiales-3,Clostridiales-3 RNA,Gene; sRNA;
RF02943,Bacteria,"unclassified sequences (79.07%), Bacteria (20.93%)","unclassified sequences (73.91%), Bacteria (26.09%)",Bacteroidales-2,Bacteroidales-2 RNA,Gene; sRNA;
RF02944,Bacteria/Mixed,"unclassified sequences (84.38%), Bacteria (15.63%)","unclassified sequences (62.5%), Bacteria (36.84%), Eukaryota (0.33%), Viruses (0.33%)",c4-2,c4-2 RNA,Gene; sRNA;
RF02945,Bacteria,"unclassified sequences (64.29%), Bacteria (35.71%)","Bacteria (70.0%), unclassified sequences (30.0%)",Corio-PBP,Corio-PBP RNA,Gene; sRNA;
RF02949,Bacteria,Bacteria (100.0%),Bacteria (100.0%),Cupriavidus-1,Cupriavidus-1 RNA,Gene; sRNA;
RF02951,Bacteria,"Bacteria (98.41%), unclassified sequences (1.59%)","Bacteria (98.9%), unclassified sequences (1.1%)",DABA-DC-AT,DABA-DC-AT RNA,Cis-reg;
RF02952,Bacteria,"unclassified sequences (66.67%), Bacteria (33.33%)","unclassified sequences (58.23%), Bacteria (41.77%)",dfrA-dnaX,dfrA-dnaX RNA,Gene; sRNA;
RF02955,Bacteria/Mixed,"unclassified sequences (84.93%), Bacteria (15.07%)","unclassified sequences (62.63%), Bacteria (36.36%), Eukaryota (1.01%)",EGFOA,EGFOA RNA,Gene; sRNA;
RF02957,Bacteria/Mixed,"Bacteria (88.39%), unclassified sequences (11.61%)","Bacteria (89.51%), unclassified sequences (9.4%), Eukaryota (1.08%)",EFASI,EFASI RNA,Gene; sRNA;
RF02958,Bacteria,"unclassified sequences (86.85%), Bacteria (13.15%)","unclassified sequences (77.8%), Bacteria (22.2%)",drum,drum RNA,Gene; sRNA;
RF02959,unclassified sequences/Bacteria,unclassified sequences (100.0%),"unclassified sequences (51.61%), Bacteria (48.39%)",DUF3085,DUF3085 RNA,Cis-reg;
RF02961,unclassified sequences/Bacteria,unclassified sequences (100.0%),"unclassified sequences (51.11%), Bacteria (48.89%)",DUF3800-II,DUF3800-II RNA,Gene; sRNA;
RF02962,unclassified sequences/Bacteria,"unclassified sequences (98.18%), Bacteria (1.82%)","unclassified sequences (73.97%), Bacteria (26.03%)",DUF3800-III,DUF3800-III RNA,Gene; sRNA;
RF02963,Bacteria,"Bacteria (60.0%), unclassified sequences (40.0%)","Bacteria (69.23%), unclassified sequences (30.77%)",DUF3800-IV,DUF3800-IV RNA,Gene; sRNA;
RF02964,unclassified sequences/Bacteria,"unclassified sequences (97.47%), Bacteria (2.53%)","unclassified sequences (55.8%), Bacteria (44.2%)",DUF3800-V,DUF3800-V RNA,Gene; sRNA;
RF02965,Bacteria,"unclassified sequences (50.41%), Bacteria (49.59%)","Bacteria (66.67%), unclassified sequences (33.33%)",CyVA-1,CyVA-1 RNA,Gene; sRNA;
RF02966,unclassified sequences/Bacteria,"unclassified sequences (90.74%), Bacteria (9.26%)","unclassified sequences (83.76%), Bacteria (16.24%)",DUF3268,DUF3268 RNA,Gene; sRNA;
RF02967,Bacteria,"unclassified sequences (87.77%), Bacteria (12.23%)","unclassified sequences (76.25%), Bacteria (23.75%)",DUF3800-VII,DUF3800-VII RNA,Gene; sRNA;
RF02968,unclassified sequences/Bacteria,"unclassified sequences (90.83%), Bacteria (9.17%)","unclassified sequences (65.4%), Bacteria (34.6%)",DUF3800-IX,DUF3800-IX RNA,Gene; sRNA;
RF02969,Bacteria/Mixed,"unclassified sequences (82.55%), Bacteria (17.45%)","unclassified sequences (74.25%), Bacteria (25.21%), Eukaryota (0.27%), Viruses (0.27%)",DUF3800-I,DUF3800-I RNA,Gene; sRNA;
RF02971,Bacteria,"Bacteria (76.92%), unclassified sequences (23.08%)","Bacteria (82.0%), unclassified sequences (18.0%)",emrB-Lactobacillus,emrB-Lactobacillus RNA,Gene; sRNA;
RF02972,Bacteria,"unclassified sequences (69.48%), Bacteria (30.52%)","unclassified sequences (59.44%), Bacteria (40.56%)",engA,engA RNA,Cis-reg;
RF02973,Bacteria,"Bacteria (97.44%), unclassified sequences (2.56%)","Bacteria (97.65%), unclassified sequences (2.35%)",Enterococcus-1,Enterococcus-1 RNA,Gene; sRNA;
RF02974,unclassified sequences/Bacteria,"unclassified sequences (91.67%), Bacteria (8.33%)","unclassified sequences (57.89%), Bacteria (42.11%)",Fibro-purF,Fibro-purF RNA,Cis-reg;
RF02975,Bacteria,"unclassified sequences (84.38%), Bacteria (15.63%)","unclassified sequences (72.48%), Bacteria (27.52%)",DUF3800-XI,DUF3800-XI RNA,Gene; sRNA;
RF02977,Bacteria/Mixed,"Bacteria (57.78%), unclassified sequences (42.22%)","Bacteria (76.19%), unclassified sequences (22.62%), Eukaryota (1.19%)",folE,folE RNA,Cis-reg;
RF02978,Bacteria,"unclassified sequences (82.14%), Bacteria (17.86%)","unclassified sequences (69.7%), Bacteria (30.3%)",folP,folP RNA,Cis-reg;
RF02981,unclassified sequences/Bacteria,unclassified sequences (100.0%),"unclassified sequences (87.1%), Bacteria (12.9%)",FTHFS,FTHFS RNA,Cis-reg;
RF02982,Bacteria,"Bacteria (98.15%), unclassified sequences (1.85%)","Bacteria (98.63%), unclassified sequences (1.37%)",gltS,gltS RNA,Cis-reg;
RF02983,Bacteria,"unclassified sequences (75.0%), Bacteria (25.0%)","Bacteria (66.67%), unclassified sequences (33.33%)",Fibrobacter-1,Fibrobacter-1 RNA,Gene; sRNA;
RF02985,unclassified sequences/Bacteria,"unclassified sequences (90.0%), Bacteria (10.0%)","unclassified sequences (52.94%), Bacteria (47.06%)",ftsZ-DE,ftsZ-DE RNA,Gene; sRNA;
RF02987,unclassified sequences/Bacteria,"unclassified sequences (98.54%), Bacteria (1.46%)","unclassified sequences (75.12%), Bacteria (24.88%)",GA-cis,GA-cis RNA,Gene; sRNA;
RF02988,Bacteria,"unclassified sequences (80.95%), Bacteria (19.05%)","unclassified sequences (80.95%), Bacteria (19.05%)",GEBRO,GEBRO RNA,Gene; sRNA;
RF02989,Bacteria,"Bacteria (85.71%), unclassified sequences (14.29%)","Bacteria (96.67%), unclassified sequences (3.33%)",gntR-DTE,gntR-DTE RNA,Gene; sRNA;
RF02992,Bacteria,Bacteria (100.0%),Bacteria (100.0%),hya,hya RNA,Cis-reg;
RF02993,Bacteria,"Bacteria (64.71%), unclassified sequences (35.29%)","Bacteria (92.47%), unclassified sequences (6.45%), Eukaryota (1.08%)",ilvH,ilvH RNA,Cis-reg;
RF02994,unclassified sequences/Bacteria,"unclassified sequences (92.59%), Bacteria (7.41%)","unclassified sequences (84.27%), Bacteria (15.73%)",IMPDH,IMPDH RNA,Gene; sRNA;
RF02996,Bacteria/Mixed,"Bacteria (53.89%), unclassified sequences (46.11%)","Bacteria (83.04%), unclassified sequences (13.81%), Viruses (1.92%), Eukaryota (1.05%), Archaea (0.17%)",int-alpA,int-alpA RNA,Gene; sRNA;
RF02999,Bacteria/Mixed,"Bacteria (78.23%), unclassified sequences (21.77%)","Bacteria (81.91%), unclassified sequences (17.76%), Eukaryota (0.33%)",ivy-DE,ivy-DE RNA,Cis-reg;
RF03000,unclassified sequences/Bacteria,"unclassified sequences (98.1%), Bacteria (1.9%)","unclassified sequences (51.65%), Bacteria (48.35%)",LOOT,LOOT RNA,Gene; sRNA;
RF03002,Bacteria,"unclassified sequences (78.72%), Bacteria (21.28%)","unclassified sequences (74.0%), Bacteria (26.0%)",lysM-Prevotella,lysM-Prevotella RNA,Cis-reg;
RF03003,Bacteria/Mixed,"unclassified sequences (86.67%), Bacteria (13.33%)","unclassified sequences (70.54%), Bacteria (26.74%), Viruses (2.71%)",GP20-b,GP20-b RNA,Cis-reg;
RF03004,Bacteria,"unclassified sequences (55.56%), Bacteria (44.44%)","unclassified sequences (50.0%), Bacteria (50.0%)",Lacto-phage-1,Lacto-phage-1 RNA,Gene; sRNA;
RF03007,Bacteria,"unclassified sequences (63.16%), Bacteria (36.84%)","Bacteria (53.85%), unclassified sequences (46.15%)",Mahella-1,Mahella-1 RNA,Gene; sRNA;
RF03008,Bacteria,"Bacteria (98.94%), unclassified sequences (1.06%)","Bacteria (99.12%), unclassified sequences (0.88%)",malK-II,malK-II RNA,Cis-reg;
RF03010,Bacteria/Mixed,"Bacteria (93.75%), unclassified sequences (6.25%)","Bacteria (72.73%), Viruses (22.73%), unclassified sequences (4.55%)",mcrA,mcrA RNA,Gene; sRNA;
RF03011,Bacteria,"unclassified sequences (78.57%), Bacteria (21.43%)","Bacteria (56.0%), unclassified sequences (44.0%)",Methylophilales-1,Methylophilales-1 RNA,Gene; sRNA;
RF03013,unclassified sequences/Bacteria,"unclassified sequences (93.96%), Bacteria (6.04%)","unclassified sequences (87.69%), Bacteria (12.31%)",nadA,nadA RNA,Gene; sRNA;
RF03014,Bacteria,"unclassified sequences (75.57%), Bacteria (24.43%)","unclassified sequences (54.96%), Bacteria (45.04%)",Transposase-1,Transposase-1 RNA,Gene; sRNA;
RF03015,Bacteria,"unclassified sequences (64.9%), Bacteria (35.1%)","Bacteria (56.44%), unclassified sequences (43.56%)",Transposase-2,Transposase-2 RNA,Gene; sRNA;
RF03016,Bacteria,"Bacteria (78.57%), unclassified sequences (21.43%)","Bacteria (81.25%), unclassified sequences (18.75%)",RT-12,RT-12 RNA,Gene; sRNA;
RF03017,Bacteria,"unclassified sequences (53.85%), Bacteria (46.15%)","Bacteria (70.83%), unclassified sequences (29.17%)",RT-13,RT-13 RNA,Gene; sRNA;
RF03018,Bacteria/Mixed,"Bacteria (62.5%), unclassified sequences (37.5%)","Bacteria (73.4%), unclassified sequences (25.53%), Eukaryota (1.06%)",RT-15,RT-15 RNA,Gene; sRNA;
RF03020,Bacteria,"unclassified sequences (87.3%), Bacteria (12.7%)","unclassified sequences (70.51%), Bacteria (29.49%)",RT-17,RT-17 RNA,Gene; sRNA;
RF03023,Bacteria,"Bacteria (92.86%), unclassified sequences (7.14%)","Bacteria (93.55%), unclassified sequences (6.45%)",rpfG,rpfG RNA,Gene; sRNA;
RF03024,Bacteria,"unclassified sequences (75.0%), Bacteria (25.0%)","unclassified sequences (70.0%), Bacteria (30.0%)",Rothia-sucC,Rothia-sucC RNA,Cis-reg;
RF03025,unclassified sequences/Bacteria,"unclassified sequences (91.49%), Bacteria (8.51%)","unclassified sequences (86.0%), Bacteria (14.0%)",RT-4,RT-4 RNA,Gene; sRNA;
RF03026,unclassified sequences/Bacteria,"unclassified sequences (98.59%), Bacteria (1.41%)","unclassified sequences (85.37%), Bacteria (14.63%)",RT-5,RT-5 RNA,Gene; sRNA;
RF03027,Bacteria,"unclassified sequences (79.66%), Bacteria (20.34%)","unclassified sequences (71.21%), Bacteria (28.79%)",RT-6,RT-6 RNA,Gene; sRNA;
RF03028,Bacteria,"unclassified sequences (87.04%), Bacteria (12.96%)","unclassified sequences (81.03%), Bacteria (18.97%)",RT-7,RT-7 RNA,Gene; sRNA;
RF03029,Bacteria,"unclassified sequences (55.56%), Bacteria (44.44%)","Bacteria (54.55%), unclassified sequences (45.45%)",RT-8,RT-8 RNA,Gene; sRNA;
RF03030,Bacteria,"Bacteria (94.74%), unclassified sequences (5.26%)","Bacteria (95.83%), unclassified sequences (4.17%)",salivarius-1,salivarius-1 RNA,Gene; sRNA;
RF03031,Bacteria,"unclassified sequences (86.44%), Bacteria (13.56%)","unclassified sequences (75.0%), Bacteria (25.0%)",ssnA,ssnA RNA,Cis-reg;
RF03032,Bacteria/Mixed,"Bacteria (75.0%), unclassified sequences (25.0%)","Bacteria (80.1%), unclassified sequences (19.4%), Eukaryota (0.5%)",narK,narK RNA,Cis-reg;
RF03033,Bacteria,"Bacteria (94.12%), unclassified sequences (5.88%)","Bacteria (96.88%), unclassified sequences (3.13%)",NLPC-P60,NLPC-P60 RNA,Cis-reg;
RF03034,Bacteria,"Bacteria (97.26%), unclassified sequences (2.74%)","Bacteria (99.11%), unclassified sequences (0.89%)",nrdJ,nrdJ RNA,Gene; sRNA;
RF03035,Bacteria,Bacteria (100.0%),Bacteria (100.0%),nqrA-Marinomonas,nqrA-Marinomonas RNA,Gene; sRNA;
RF03036,Bacteria/Mixed,"Bacteria (68.42%), unclassified sequences (31.58%)","Bacteria (75.81%), unclassified sequences (19.35%), Eukaryota (4.84%)",osmY,osmY RNA,Gene; sRNA;
RF03037,Bacteria,"unclassified sequences (63.95%), Bacteria (36.05%)","unclassified sequences (59.78%), Bacteria (40.22%)",PAGEV,PAGEV RNA,Gene; sRNA;
RF03038,Bacteria/Mixed,"unclassified sequences (75.0%), Bacteria (25.0%)","Bacteria (58.82%), unclassified sequences (35.29%), Eukaryota (5.88%)",nhaA-II,nhaA-II RNA,Cis-reg;
RF03039,Bacteria/Mixed,"Bacteria (67.41%), unclassified sequences (32.59%)","Bacteria (75.53%), unclassified sequences (23.4%), Eukaryota (1.06%)",Peptidase-S11,Peptidase-S11 RNA,Cis-reg;
RF03040,unclassified sequences/Bacteria,unclassified sequences (100.0%),"unclassified sequences (69.23%), Bacteria (30.77%)",PGK,PGK RNA,Cis-reg;
RF03042,Bacteria,"Bacteria (78.82%), unclassified sequences (21.18%)","Bacteria (82.52%), unclassified sequences (17.48%)",porB,porB RNA,Gene; sRNA;
RF03043,Bacteria,"unclassified sequences (65.0%), Bacteria (35.0%)","unclassified sequences (54.17%), Bacteria (45.83%)",Prevotella-2,Prevotella-2 RNA,Gene; sRNA;
RF03044,Bacteria/Mixed,"unclassified sequences (61.19%), Bacteria (38.81%)","Bacteria (59.81%), unclassified sequences (38.32%), Eukaryota (0.93%), Viruses (0.93%)",Proteo-phage-1,Proteo-phage-1 RNA,Gene; sRNA;
RF03045,Bacteria,"Bacteria (81.25%), unclassified sequences (18.75%)","Bacteria (89.29%), unclassified sequences (10.71%)",proV,proV RNA,Gene; sRNA;
RF03046,Bacteria/Mixed,"Bacteria (79.63%), unclassified sequences (20.37%)","Bacteria (83.56%), unclassified sequences (15.07%), Eukaryota (1.37%)",Pseudomonadales-1,Pseudomonadales-1 RNA,Gene; sRNA;
RF03050,Bacteria,"unclassified sequences (80.95%), Bacteria (19.05%)","unclassified sequences (73.91%), Bacteria (26.09%)",RAGATH-25,RAGATH-25 RNA,Gene; sRNA;
RF03052,Bacteria,"unclassified sequences (84.71%), Bacteria (15.29%)","unclassified sequences (75.79%), Bacteria (24.21%)",RAGATH-28,RAGATH-28 RNA,Gene; sRNA;
RF03054,Bacteria/Mixed,"Bacteria (72.58%), unclassified sequences (27.42%)","Bacteria (80.84%), unclassified sequences (18.64%), Eukaryota (0.52%)",Xanthine,Xanthine riboswitch (NMT1 RNA),Cis-reg;
RF03056,Bacteria,"unclassified sequences (87.5%), Bacteria (12.5%)","unclassified sequences (60.87%), Bacteria (39.13%)",RAGATH-35,RAGATH-35 RNA,Gene; sRNA;
RF03057,Bacteria/Mixed,"unclassified sequences (60.85%), Bacteria (39.15%)","Bacteria (68.28%), unclassified sequences (30.65%), Eukaryota (1.08%)",nhaA-I,nhaA-I RNA,Cis-reg; riboswitch;
RF03058,Bacteria,"Bacteria (81.48%), unclassified sequences (18.52%)","Bacteria (96.21%), unclassified sequences (2.92%), Eukaryota (0.87%)",sul1,sul1 RNA,Cis-reg; riboswitch;
RF03059,Bacteria,"Bacteria (96.25%), unclassified sequences (3.75%)","Bacteria (98.77%), unclassified sequences (1.23%)",raiA-hairpin,raiA-hairpin RNA,Gene; sRNA;
RF03060,Bacteria,"Bacteria (73.89%), unclassified sequences (26.11%)","Bacteria (81.53%), unclassified sequences (18.47%)",uup,uup RNA,Cis-reg;
RF03061,Bacteria,Bacteria (100.0%),Bacteria (100.0%),uxuA,uxuA RNA,Gene; sRNA;
RF03063,Bacteria,"Bacteria (92.11%), unclassified sequences (7.89%)","Bacteria (98.69%), unclassified sequences (1.31%)",Streptomyces-metK,Streptomyces-metK RNA,Gene; sRNA;
RF03066,Bacteria,"Bacteria (74.58%), unclassified sequences (25.42%)","Bacteria (80.0%), unclassified sequences (20.0%)",COG3610-DE,COG3610-DE RNA,Gene; sRNA;
RF03067,Bacteria,"Bacteria (79.07%), unclassified sequences (20.93%)","Bacteria (95.83%), unclassified sequences (3.75%), Eukaryota (0.42%)",terC,terC RNA,Cis-reg;
RF03068,Bacteria,"unclassified sequences (86.58%), Bacteria (13.42%)","unclassified sequences (81.97%), Bacteria (18.03%)",RT-3,RT-3 RNA,Gene; sRNA;
RF03069,unclassified sequences/Bacteria,"unclassified sequences (92.86%), Bacteria (7.14%)","unclassified sequences (85.67%), Bacteria (14.33%)",malK-I,malK-I RNA,Cis-reg;
RF03070,unclassified sequences/Bacteria,"unclassified sequences (92.31%), Bacteria (7.69%)","unclassified sequences (84.21%), Bacteria (15.79%)",ssNA-helicase,ssNA-helicase RNA,Gene; sRNA;
RF03071,Bacteria,"Bacteria (62.33%), unclassified sequences (37.67%)","Bacteria (79.93%), unclassified sequences (20.07%)",Sodium,Na+ riboswitch (DUF1646 RNA),Cis-reg; riboswitch;
RF03072,Bacteria,"unclassified sequences (77.46%), Bacteria (22.54%)","unclassified sequences (51.36%), Bacteria (48.64%)",raiA,raiA RNA,Cis-reg; riboswitch;
RF03073,Bacteria,"unclassified sequences (78.26%), Bacteria (21.74%)","unclassified sequences (78.26%), Bacteria (21.74%)",RT-19,RT-19 RNA,Gene; sRNA;
RF03074,Bacteria,"unclassified sequences (73.18%), Bacteria (26.82%)","Bacteria (58.92%), unclassified sequences (41.08%)",Rhodo-rpoB,Rhodo-rpoB RNA,Cis-reg;
RF03075,Bacteria/Mixed,"unclassified sequences (84.69%), Bacteria (15.31%)","unclassified sequences (69.69%), Bacteria (28.74%), Viruses (1.18%), Eukaryota (0.39%)",DUF3800-VIII,DUF3800-VIII RNA,Gene; sRNA;
RF03076,Bacteria,"Bacteria (90.7%), unclassified sequences (9.3%)","Bacteria (98.31%), unclassified sequences (1.69%)",Streptomyces-metH,Streptomyces-metH RNA,Gene; sRNA;
RF03077,unclassified sequences/Bacteria,"unclassified sequences (95.9%), Bacteria (4.1%)","unclassified sequences (89.52%), Bacteria (10.48%)",RT-2,RT-2 RNA,Gene; sRNA;
RF03078,Bacteria/Mixed,"unclassified sequences (59.51%), Bacteria (40.49%)","Bacteria (70.76%), unclassified sequences (28.99%), Eukaryota (0.25%)",chrB-a,chrB-a RNA,Cis-reg;
RF03080,Bacteria,"unclassified sequences (77.08%), Bacteria (22.92%)","unclassified sequences (56.92%), Bacteria (43.08%)",RT-9,RT-9 RNA,Gene; sRNA;
RF03081,Bacteria/Mixed,"unclassified sequences (67.39%), Bacteria (32.61%)","Bacteria (87.14%), unclassified sequences (11.07%), Eukaryota (1.79%)",DUF805,DUF805 RNA,Cis-reg;
RF03082,Bacteria,"unclassified sequences (82.56%), Bacteria (17.44%)","unclassified sequences (63.96%), Bacteria (36.04%)",dinG,dinG RNA,Gene; sRNA;
RF03085,Bacteria/Mixed,"unclassified sequences (74.6%), Bacteria (25.4%)","Bacteria (67.63%), unclassified sequences (30.13%), Viruses (2.24%)",abiF,abiF RNA,Gene; sRNA;
RF03086,Bacteria/Mixed,"unclassified sequences (89.78%), Bacteria (10.22%)","unclassified sequences (63.25%), Bacteria (36.08%), Eukaryota (0.67%)",chrB-b,chrB-b RNA,Cis-reg;
RF03088,Bacteria,"unclassified sequences (80.0%), Bacteria (20.0%)","unclassified sequences (75.0%), Bacteria (25.0%)",Parabacteroides-1,Parabacteroides-1 RNA,Gene; sRNA;
RF03090,Bacteria,"unclassified sequences (89.29%), Bacteria (10.71%)","unclassified sequences (86.21%), Bacteria (13.79%)",lysM-Actino,lysM-Actino RNA,Cis-reg;
RF03091,Bacteria,"unclassified sequences (81.82%), Bacteria (18.18%)","unclassified sequences (81.82%), Bacteria (18.18%)",Clostridium-PBP,Clostridium-PBP RNA,Gene; sRNA;
RF03097,Bacteria,"unclassified sequences (89.47%), Bacteria (10.53%)","unclassified sequences (89.47%), Bacteria (10.53%)",RAGATH-21,RAGATH-21 RNA,Gene; sRNA;
RF03098,unclassified sequences/Bacteria,"unclassified sequences (94.44%), Bacteria (5.56%)","unclassified sequences (89.47%), Bacteria (10.53%)",RAGATH-22,RAGATH-22 RNA,Gene; sRNA;
RF03100,Bacteria,"unclassified sequences (86.67%), Bacteria (13.33%)","unclassified sequences (81.25%), Bacteria (18.75%)",RAGATH-27,RAGATH-27 RNA,Gene; sRNA;
RF03108,Bacteria,"unclassified sequences (50.0%), Bacteria (50.0%)","Bacteria (70.0%), unclassified sequences (30.0%)",Methylosinus-1,Methylosinus-1 RNA,Gene; sRNA;
RF03109,Bacteria,"Bacteria (71.43%), unclassified sequences (28.57%)","Bacteria (78.95%), unclassified sequences (21.05%)",Thermales-rpoB,Thermales-rpoB RNA,Cis-reg;
RF03111,Bacteria,"Bacteria (63.64%), unclassified sequences (36.36%)","Bacteria (66.67%), unclassified sequences (33.33%)",Zeta-pan,Zeta-pan RNA,Gene; sRNA;
RF03113,Bacteria,Bacteria (100.0%),Bacteria (100.0%),Poribacteria-1,Poribacteria-1 RNA,Gene; sRNA;
RF03114,Bacteria,"unclassified sequences (60.0%), Bacteria (40.0%)","unclassified sequences (50.0%), Bacteria (50.0%)",RT-1,RT-1 RNA,Gene; sRNA;
RF03115,Bacteria/Mixed,"Bacteria (83.72%), unclassified sequences (16.28%)","Bacteria (84.21%), unclassified sequences (12.28%), Eukaryota (3.51%)",KDPG-aldolase,KDPG-aldolase RNA,Gene; sRNA;
RF03126,Bacteria,"unclassified sequences (83.76%), Bacteria (16.24%)","unclassified sequences (65.33%), Bacteria (34.67%)",L20-Deltaproteobacteria,L20-Deltaproteobacteria ribosomal protein leader,Cis-reg; leader;
RF03127,Bacteria,"unclassified sequences (79.46%), Bacteria (20.54%)","unclassified sequences (69.67%), Bacteria (30.33%)",L13-Bacteroidia,L13-Bacteroidia ribosomal protein leader,Cis-reg; leader;
RF03128,Bacteria/Mixed,"unclassified sequences (72.0%), Bacteria (28.0%)","Bacteria (50.78%), unclassified sequences (42.19%), Eukaryota (7.03%)",L31-Coriobacteria,L31-Coriobacteria ribosomal protein leader,Cis-reg; leader;
RF03129,Bacteria,"Bacteria (81.42%), unclassified sequences (18.58%)","Bacteria (87.5%), unclassified sequences (12.5%)",L31-Corynebacteriaceae,L31-Corynebacteriaceae ribosomal protein leader,Cis-reg; leader;
RF03130,Bacteria/Mixed,"unclassified sequences (64.35%), Bacteria (35.65%)","Bacteria (56.78%), unclassified sequences (42.18%), Eukaryota (1.04%)",L19-Flavobacteria,L19-Flavobacteria ribosomal protein leader,Cis-reg; leader;
RF03131,Bacteria,"Bacteria (93.96%), unclassified sequences (6.04%)","Bacteria (95.37%), unclassified sequences (3.82%), Eukaryota (0.8%)",L25-Gammaproteobacteria,L25-Gammaproteobacteria ribosomal protein leader,Cis-reg; leader;
RF03132,Bacteria,"Bacteria (93.38%), unclassified sequences (6.62%)","Bacteria (95.95%), unclassified sequences (4.05%)",L17-Actino-Proteobacteria,L17-Actino-Proteobacteria ribosomal protein leader,Cis-reg; leader;
RF03133,Bacteria,"unclassified sequences (65.48%), Bacteria (34.52%)","unclassified sequences (53.92%), Bacteria (46.08%)",S4-Fusobacteriales,S4-Fusobacteriales ribosomal protein leader,Cis-reg; leader;
RF03134,Bacteria,"unclassified sequences (70.59%), Bacteria (29.41%)","unclassified sequences (52.17%), Bacteria (47.83%)",S6-S18-Chlorobi,S6-S18-Chlorobi ribosomal protein leader,Cis-reg; leader;
RF03136,Bacteria/Mixed,"unclassified sequences (62.81%), Bacteria (37.19%)","Bacteria (81.97%), unclassified sequences (17.58%), Eukaryota (0.45%)",S10-Clostridia,S10-Clostridia ribosomal protein leader,Cis-reg; leader;
RF03138,Bacteria,"unclassified sequences (79.23%), Bacteria (20.77%)","Bacteria (63.57%), unclassified sequences (36.43%)",S16-Flavobacteria,S16-Flavobacteria ribosomal protein leader,Cis-reg; leader;
RF03139,Bacteria,"unclassified sequences (82.22%), Bacteria (17.78%)","unclassified sequences (62.5%), Bacteria (37.5%)",S4-Bacteroidia,S4-Bacteroidia ribosomal protein leader,Cis-reg; leader;
RF03140,Bacteria,"unclassified sequences (74.29%), Bacteria (25.71%)","unclassified sequences (57.55%), Bacteria (42.45%)",S4-Clostridia,S4-Clostridia ribosomal protein leader,Cis-reg; leader;
RF03141,Bacteria/Mixed,"unclassified sequences (66.92%), Bacteria (33.08%)","Bacteria (65.58%), unclassified sequences (34.17%), Eukaryota (0.25%)",S4-Flavobacteria,S4-Flavobacteria ribosomal protein leader,Cis-reg; leader;
RF03142,Bacteria,"unclassified sequences (72.12%), Bacteria (27.88%)","unclassified sequences (52.74%), Bacteria (47.26%)",L2-Alphaproteobacteria,L2-Alphaproteobacteria ribosomal protein leader,Cis-reg; leader;
RF03151,Bacteria,"unclassified sequences (53.85%), Bacteria (46.15%)","Bacteria (66.67%), unclassified sequences (33.33%)",cyano-S1,Cyanobacterial ribosomal protein S1 leader,Cis-reg; leader;
RF03155,Bacteria,Bacteria (100.0%),Bacteria (100.0%),TD-1,TD-1 RNA,Cis-reg;
RF03156,Bacteria,"Bacteria (59.1%), unclassified sequences (40.9%)","unclassified sequences (51.88%), Bacteria (48.13%)",L31-Firmicutes,L31-Firmicutes ribosomal protein leader,Cis-reg; leader;
RF03157,Bacteria/Mixed,"Bacteria (78.44%), unclassified sequences (21.56%)","Bacteria (84.26%), unclassified sequences (15.08%), Eukaryota (0.67%)",L31-Gammaproteobacteria,L31-Gammaproteobacteria ribosomal protein leader,Cis-reg; leader;
RF03158,Bacteria/Mixed,"Bacteria (64.16%), unclassified sequences (35.84%)","Bacteria (76.53%), unclassified sequences (23.4%), Eukaryota (0.07%)",L31-Actinobacteria,L31-Actinobacteria ribosomal protein leader,Cis-reg; leader;
RF03161,Bacteria/Mixed,"unclassified sequences (75.94%), Bacteria (24.06%)","unclassified sequences (60.58%), Bacteria (39.33%), Eukaryota (0.09%)",S15-Flavobacteria,S15-Flavobacteria ribosomal protein leader,Cis-reg; leader;
RF03162,Bacteria,Bacteria (100.0%),Bacteria (100.0%),TD-2,TD-2 RNA,Gene; sRNA;
RF03163,Mixed/Bacteria,"Bacteria (66.23%), unclassified sequences (24.68%), Viruses (9.09%)","Bacteria (91.22%), unclassified sequences (3.6%), Eukaryota (2.7%), Viruses (2.48%)",c4-a1b1,"a1, b1 targets of C4 antisense RNA",Gene; antisense;
RF03164,Bacteria,"Bacteria (61.54%), unclassified sequences (38.46%)","Bacteria (52.94%), unclassified sequences (47.06%)",NiCo-AnGGAG,NiCo-AnGGAG riboswitch,Cis-reg;
RF03165,unclassified sequences/Bacteria,"unclassified sequences (96.67%), Bacteria (3.33%)","Bacteria (67.42%), unclassified sequences (32.58%)",2dG-II,2dG-II purine riboswitch,Cis-reg;
RF03166,Bacteria,"unclassified sequences (80.77%), Bacteria (19.23%)","Bacteria (56.25%), unclassified sequences (43.75%)",glycine-GGAnGA,glycine-GGAnGA riboswitch,Cis-reg;
RF03167,unclassified sequences/Bacteria,"unclassified sequences (97.37%), Bacteria (2.63%)","Bacteria (96.27%), unclassified sequences (3.37%), Eukaryota (0.24%), Archaea (0.12%)",c-di-GMP-I-GGC,c-di-GMP-I-GGC riboswitch,Cis-reg;
RF03168,Bacteria,"unclassified sequences (66.67%), Bacteria (33.33%)","Bacteria (82.61%), unclassified sequences (17.39%)",c-di-GMP-I-UAU,c-di-GMP-I-UAU riboswitch,Cis-reg;
RF03169,unclassified sequences/Bacteria,"unclassified sequences (90.47%), Bacteria (9.53%)","unclassified sequences (72.44%), Bacteria (27.56%)",c-di-GMP-II-GAG,c-di-GMP-II-GAG riboswitch,Cis-reg;
RF03170,Bacteria,"unclassified sequences (87.88%), Bacteria (12.12%)","unclassified sequences (71.81%), Bacteria (28.19%)",c-di-GMP-II-GCG,c-di-GMP-II-GCG riboswitch,Cis-reg;
RF03530,Bacteria,Bacteria (100.0%),Bacteria (100.0%),bglG-cis-reg,cis-regulatory element of the bglG/LicT operon,Cis-reg;
RF03531,Bacteria,Bacteria (100.0%),Bacteria (100.0%),n00280,Clostridioides difficile sRNA included into helicase gene,Gene; sRNA;
RF03532,Bacteria,Bacteria (100.0%),Bacteria (100.0%),SQ2397,Cis-regulator of HTH transcription factor,Cis-reg;
RF03533,Bacteria,Bacteria (100.0%),Bacteria (100.0%),SQ1002_RNA,Clostridioides difficile sRNA SQ1002,Gene; sRNA;
RF03534,Bacteria,Bacteria (100.0%),Bacteria (100.0%),sRNA71,Staphylococcus sRNA71 small RNA,Gene; sRNA;
RF03535,Bacteria,Bacteria (100.0%),Bacteria (100.0%),TEG147,Staphylococcus aureus small RNA TEG147,Cis-reg;
RF04177,Bacteria,Bacteria (100.0%),Bacteria (100.0%),BTnc201,Bacteroides sRNA BTnc201,Gene; sRNA;
RF04178,Bacteria,Bacteria (100.0%),Bacteria (100.0%),BTnc005,Bacteroides sRNA BTnc005,Gene; sRNA; 
RF04179,Bacteria,Bacteria (100.0%),Bacteria (100.0%),BTnc049,Bacteroides sRNA BTnc049,Gene; sRNA;
RF04180,Bacteria,Bacteria (100.0%),Bacteria (100.0%),BTnc231,Bacteroides sRNA BTnc231,Gene; sRNA;
RF04181,Bacteria,Bacteria (100.0%),Bacteria (100.0%),rteR,rteR sRNA,Gene; sRNA;
RF04182,Bacteria,Bacteria (100.0%),Bacteria (100.0%),GibS,GibS sRNA,Gene; sRNA;
RF04183,Bacteria,Bacteria (100.0%),"Bacteria (99.37%), Eukaryota (0.63%)",Bacteroidales_small_SRP,Bacteroidales small SRP,Gene;
RF04184,Bacteria,Bacteria (100.0%),Bacteria (100.0%),BTnc060,Bacteroides sRNA BTnc060,Gene; sRNA;
RF04189,Bacteria,Bacteria (100.0%),Bacteria (100.0%),icd-II,icd-II ncRNA motif,Cis-reg;
RF04192,Bacteria,Bacteria (100.0%),Bacteria (100.0%),carA,carA ncRNA motif,Cis-reg;