Family,Domain,Seed domains,Full region domains,Rfam ID,Description,RNA type
RF00001,Mixed,"Bacteria (48.6%), Eukaryota (45.51%), Archaea (5.9%)","Eukaryota (87.59%), Bacteria (12.0%), Archaea (0.4%)",5S_rRNA,5S ribosomal RNA,Gene; rRNA;
RF00005,Mixed,"Eukaryota (78.2%), Bacteria (17.3%), Archaea (3.46%), Viruses (1.05%)","Eukaryota (73.83%), Bacteria (25.02%), Archaea (0.95%), Viruses (0.2%)",tRNA,tRNA,Gene; tRNA;
RF00036,Viruses,Viruses (100.0%),Viruses (100.0%),RRE,HIV Rev response element,Cis-reg;
RF00041,Viruses,Viruses (100.0%),Viruses (100.0%),Entero_OriR,Enteroviral 3' UTR element,Cis-reg;
RF00044,Viruses,Viruses (100.0%),Viruses (100.0%),Phage_pRNA,Bacteriophage pRNA,Gene;
RF00048,Viruses,Viruses (100.0%),"Viruses (93.44%), Eukaryota (6.56%)",Entero_CRE,Enterovirus cis-acting replication element,Cis-reg;
RF00061,Viruses/Mixed,Viruses (100.0%),"Viruses (75.0%), Eukaryota (25.0%)",IRES_HCV,Hepatitis C virus internal ribosome entry site,Cis-reg; IRES;
RF00094,Viruses,Viruses (100.0%),"Viruses (92.5%), Eukaryota (7.5%)",HDV_ribozyme,Hepatitis delta virus ribozyme,Gene; ribozyme;
RF00102,Viruses/Mixed,"Viruses (98.15%), Eukaryota (1.85%)","Viruses (85.93%), Eukaryota (14.07%)",VA,VA RNA,Gene;
RF00164,Viruses/Mixed,"Viruses (97.44%), Other (2.56%)","Eukaryota (50.0%), Viruses (37.5%), Other (12.5%)",s2m,Coronavirus 3' stem-loop II-like motif (s2m),Cis-reg;
RF00165,Viruses/Eukaryota,Viruses (100.0%),Eukaryota (100.0%),Corona_pk3,Coronavirus 3' UTR pseudoknot,Cis-reg;
RF00171,Viruses,Viruses (100.0%),Viruses (100.0%),Tombus_5,Tombusvirus 5' UTR,Cis-reg;
RF00173,Viruses,Viruses (100.0%),Viruses (100.0%),Hairpin,Hairpin ribozyme,Gene; ribozyme;
RF00175,Viruses,Viruses (100.0%),Viruses (100.0%),HIV-1_DIS,Human immunodeficiency virus type 1 dimerisation initiation site,Cis-reg;
RF00176,Viruses,Viruses (100.0%),"Viruses (95.24%), Eukaryota (4.76%)",Tombus_3_IV,Tombusvirus 3' UTR region IV,Cis-reg;
RF00182,Viruses,Viruses (100.0%),Viruses (100.0%),Corona_package,Coronavirus packaging signal,Cis-reg;
RF00184,Viruses,Viruses (100.0%),Viruses (100.0%),PVX_3,Potato virus X cis-acting regulatory element,Cis-reg;
RF00185,Viruses,Viruses (100.0%),"Viruses (98.86%), Eukaryota (1.14%)",Flavi_CRE,Flavivirus 3' UTR cis-acting replication element (CRE),Cis-reg;
RF00192,Viruses,Viruses (100.0%),Viruses (100.0%),BLV_package,Bovine leukaemia virus RNA packaging signal,Cis-reg;
RF00193,Viruses,Viruses (100.0%),Viruses (100.0%),CTV_rep_sig,Citrus tristeza virus replication signal,Cis-reg;
RF00194,Viruses,Viruses (100.0%),"Viruses (92.86%), Eukaryota (7.14%)",Rubella_3,Rubella virus 3' cis-acting element,Cis-reg;
RF00196,Viruses,Viruses (100.0%),Viruses (100.0%),AMV_RNA1_SL,Alfalfa mosaic virus RNA 1 5' UTR stem-loop,Cis-reg;
RF00209,Viruses,Viruses (100.0%),Viruses (100.0%),IRES_Pesti,Pestivirus internal ribosome entry site (IRES),Cis-reg; IRES;
RF00210,Viruses,Viruses (100.0%),Viruses (100.0%),IRES_Picorna_2,Aphthovirus internal ribosome entry site (IRES),Cis-reg; IRES;
RF00214,Viruses/Mixed,Viruses (100.0%),"Eukaryota (77.5%), Viruses (22.5%)",Retro_dr1,Retrovirus direct repeat 1 (dr1),Cis-reg;
RF00215,Viruses,Viruses (100.0%),Viruses (100.0%),Tombus_3_III,Tombus virus defective interfering (DI) RNA region 3,Cis-reg;
RF00220,Viruses,Viruses (100.0%),Viruses (100.0%),Rhino_CRE,Human rhinovirus internal cis-acting regulatory element (CRE),Cis-reg;
RF00225,Viruses,Viruses (100.0%),Viruses (100.0%),IRES_Tobamo,Tobamovirus internal ribosome entry site (IRES),Cis-reg; IRES;
RF00228,Viruses,Viruses (100.0%),Viruses (100.0%),IRES_HepA,Hepatitis A virus internal ribosome entry site (IRES),Cis-reg; IRES;
RF00229,Viruses,Viruses (100.0%),"Viruses (95.05%), Eukaryota (4.95%)",IRES_Picorna,Picornavirus internal ribosome entry site (IRES),Cis-reg; IRES;
RF00233,Viruses,Viruses (100.0%),Viruses (100.0%),Tymo_tRNA-like,Tymovirus/Pomovirus/Furovirus tRNA-like 3' UTR element,Cis-reg;
RF00250,Viruses,Viruses (100.0%),"Viruses (96.55%), Bacteria (3.45%)",mir-TAR,Trans-activation response element (TAR),Gene; miRNA;
RF00252,Viruses,Viruses (100.0%),"Viruses (95.45%), Eukaryota (4.55%)",Alfamo_CPB,Alfalfa mosaic virus coat protein binding (CPB) RNA,Cis-reg;
RF00260,Viruses,Viruses (100.0%),Viruses (100.0%),HepC_CRE,Hepatitis C virus (HCV) cis-acting replication element (CRE),Cis-reg;
RF00262,Viruses/Mixed,Viruses (100.0%),"Viruses (76.92%), Bacteria (15.38%), Eukaryota (7.69%)",sar,sar RNA,Gene; antisense;
RF00290,Viruses,Viruses (100.0%),Viruses (100.0%),BaMV_CRE,Bamboo mosaic potexvirus (BaMV) cis-regulatory element,Cis-reg;
RF00363,Viruses,Viruses (100.0%),Viruses (100.0%),mir-BART1,mir-BART1 microRNA precursor family,Gene; miRNA;
RF00364,Viruses,Viruses (100.0%),Viruses (100.0%),mir-BART2,mir-BART2 microRNA precursor family,Gene; miRNA;
RF00365,Viruses,Viruses (100.0%),Viruses (100.0%),mir-BHRF1-1,mir-BHRF1-1 microRNA precursor family,Gene; miRNA;
RF00366,Viruses,Viruses (100.0%),Viruses (100.0%),mir-BHRF1-2,mir-BHRF1-2 microRNA precursor family,Gene; miRNA;
RF00367,Viruses,Viruses (100.0%),Viruses (100.0%),mir-BHRF1-3,mir-BHRF1-3 microRNA precursor family,Gene; miRNA;
RF00374,Viruses/Mixed,Viruses (100.0%),"Eukaryota (85.45%), Viruses (14.55%)",Gammaretro_CES,Gammaretrovirus core encapsidation signal,Cis-reg;
RF00375,Viruses,"Viruses (99.23%), Eukaryota (0.77%)",Viruses (100.0%),HIV_PBS,HIV primer binding site (PBS),Cis-reg;
RF00376,Viruses,Viruses (100.0%),Viruses (100.0%),HIV_GSL3,HIV gag stem loop 3 (GSL3),Cis-reg;
RF00384,Viruses,Viruses (100.0%),Viruses (100.0%),Pox_AX_element,Poxvirus AX element late mRNA cis-regulatory element,Cis-reg;
RF00385,Viruses/Mixed,Viruses (100.0%),"Viruses (88.89%), Eukaryota (11.11%)",IBV_D-RNA,Infectious bronchitis virus D-RNA,Cis-reg;
RF00386,Viruses,Viruses (100.0%),Viruses (100.0%),Entero_5_CRE,Enterovirus 5' cloverleaf cis-acting replication element,Cis-reg;
RF00389,Viruses,Viruses (100.0%),Viruses (100.0%),satBaMV_CRE,Bamboo mosaic virus satellite RNA cis-regulatory element,Cis-reg;
RF00390,Viruses,Viruses (100.0%),Viruses (100.0%),UPSK,UPSK RNA,Cis-reg;
RF00434,Viruses,Viruses (100.0%),Viruses (100.0%),BTE,Luteovirus cap-independent translation element (BTE),Cis-reg;
RF00448,Viruses,Viruses (100.0%),Viruses (100.0%),IRES_EBNA,Epstein-Barr virus nuclear antigen (EBNA) IRES,Cis-reg; IRES;
RF00453,Viruses,Viruses (100.0%),Viruses (100.0%),Cardiovirus_CRE,Cardiovirus cis-acting replication element (CRE),Cis-reg;
RF00458,Viruses,Viruses (100.0%),Viruses (100.0%),IRES_Cripavirus,Cripavirus internal ribosome entry site (IRES),Cis-reg; IRES;
RF00467,Viruses/Mixed,Viruses (100.0%),"Eukaryota (56.6%), Viruses (43.4%)",RSV_PBS,Rous sarcoma virus (RSV) primer binding site (PBS),Cis-reg;
RF00468,Viruses,Viruses (100.0%),Viruses (100.0%),HCV_SLVII,Hepatitis C virus stem-loop VII,Cis-reg;
RF00470,Viruses,Viruses (100.0%),Viruses (100.0%),Toga_5_CRE,Togavirus 5' plus strand cis-regulatory element,Cis-reg;
RF00480,Viruses,Viruses (100.0%),Viruses (100.0%),HIV_FE,HIV Ribosomal frameshift signal,Cis-reg; frameshift_element;
RF00481,Viruses,Viruses (100.0%),Viruses (100.0%),HCV_X3,Hepatitis C virus 3' X element,Cis-reg;
RF00498,Viruses,Viruses (100.0%),Viruses (100.0%),EAV_LTH,Equine arteritis virus leader TRS hairpin (LTH),Cis-reg; leader;
RF00499,Viruses/Mixed,Viruses (100.0%),"Viruses (85.71%), Eukaryota (14.29%)",Parecho_CRE,Human parechovirus 1 (HPeV1) cis regulatory element (CRE),Cis-reg;
RF00500,Viruses,Viruses (100.0%),Viruses (100.0%),TCV_H5,Turnip crinkle virus (TCV) repressor of minus strand synthesis H5,Cis-reg;
RF00501,Viruses,Viruses (100.0%),Viruses (100.0%),Rota_CRE,Rotavirus cis-acting replication element (CRE),Cis-reg;
RF00502,Viruses,Viruses (100.0%),Viruses (100.0%),TCV_Pr,Turnip crinkle virus (TCV) core promoter hairpin (Pr),Cis-reg;
RF00507,Viruses,Viruses (100.0%),Viruses (100.0%),Corona_FSE,Coronavirus frameshifting stimulation element,Cis-reg; frameshift_element;
RF00510,Viruses,Viruses (100.0%),Viruses (100.0%),Tombus_IRE,Tombusvirus internal replication element (IRE),Cis-reg;
RF00511,Viruses,Viruses (100.0%),Viruses (100.0%),IRES_KSHV,Kaposi's sarcoma-associated herpesvirus internal ribosome entry site,Cis-reg; IRES;
RF00525,Viruses,Viruses (100.0%),"Viruses (98.28%), Eukaryota (1.72%)",Flavivirus_DB,Flavivirus DB element,Cis-reg;
RF00550,Viruses,Viruses (100.0%),Viruses (100.0%),HepE_CRE,Hepatitis E virus cis-reactive element,Cis-reg;
RF00617,Viruses,Viruses (100.0%),"Viruses (90.32%), Other (8.6%), Eukaryota (1.08%)",cHP,Flavivirus capsid hairpin cHP,Cis-reg;
RF00620,Viruses,Viruses (100.0%),Viruses (100.0%),HCV_ARF_SL,Hepatitis C alternative reading frame stem-loop,Cis-reg;
RF00863,Viruses,Viruses (100.0%),Viruses (100.0%),mir-BART17,microRNA mir-BART17,Gene; miRNA;
RF00864,Viruses,Viruses (100.0%),Viruses (100.0%),mir-BART20,mir-BART20 microRNA precursor family,Gene; miRNA;
RF00866,Viruses,Viruses (100.0%),Viruses (100.0%),mir-BART3,mir-BART3 microRNA precursor family,Gene; miRNA;
RF00867,Viruses,Viruses (100.0%),Viruses (100.0%),mir-BART5,mir-BART5 microRNA precursor family,Gene; miRNA;
RF00868,Viruses,Viruses (100.0%),Viruses (100.0%),mir-BART15,mir-BART15 microRNA precursor family,Gene; miRNA;
RF00869,Viruses,Viruses (100.0%),Viruses (100.0%),mir-BART7,microRNA mir-BART7,Gene; miRNA;
RF00874,Viruses,Viruses (100.0%),Viruses (100.0%),mir-BART12,microRNA mir-BART12,Gene; miRNA;
RF01009,Viruses,Viruses (100.0%),Viruses (100.0%),mir-M7,microRNA mir-M7,Gene; miRNA;
RF01047,Viruses,Viruses (100.0%),Viruses (100.0%),HBV_epsilon,HBV RNA encapsidation signal epsilon,Cis-reg;
RF01072,Viruses,Viruses (100.0%),"Viruses (90.0%), Eukaryota (7.5%), Bacteria (2.5%)",TMV_UPD-PK3,Pseudoknot of upstream pseudoknot domain (UPD) of the 3'UTR,Cis-reg;
RF01073,Viruses/Eukaryota,Viruses (100.0%),"Eukaryota (99.6%), Viruses (0.4%)",GP_knot1,Gag/pol translational readthrough site,Cis-reg;
RF01074,Viruses,Viruses (100.0%),Viruses (100.0%),RF_site1,Putative RNA-dependent RNA polymerase ribosomal frameshift site,Cis-reg; frameshift_element;
RF01075,Viruses,Viruses (100.0%),Viruses (100.0%),TLS-PK1,Pseudoknot of tRNA-like structure,Cis-reg;
RF01076,Viruses,Viruses (100.0%),Viruses (100.0%),RF_site2,Polymerase ribosomal frameshift site,Cis-reg; frameshift_element;
RF01077,Viruses/Mixed,Viruses (100.0%),"Viruses (83.33%), Bacteria (16.67%)",TLS-PK2,Pseudoknot of tRNA-like structure,Cis-reg;
RF01078,Viruses,Viruses (100.0%),Viruses (100.0%),PK-PYVV,3'-terminal pseudoknot in PYVV,Cis-reg;
RF01079,Viruses,Viruses (100.0%),Viruses (100.0%),RF_site3,Putative RNA-dependent RNA polymerase ribosomal frameshift site,Cis-reg; frameshift_element;
RF01080,Viruses,Viruses (100.0%),Viruses (100.0%),UPD-PKib,Pseudoknot of upstream pseudoknot domain (UPD) of the 3'UTR,Cis-reg;
RF01081,Viruses,Viruses (100.0%),Viruses (100.0%),SBWMV1_UPD-PKe,Pseudoknot of upstream pseudoknot domain (UPD) of the 3'UTR,Cis-reg;
RF01082,Viruses,Viruses (100.0%),Viruses (100.0%),SBWMV1_UPD-PKh,Pseudoknot of upstream pseudoknot domain (UPD) of the 3'UTR,Cis-reg;
RF01083,Viruses/Mixed,Viruses (100.0%),"Viruses (63.64%), Eukaryota (27.27%), Bacteria (9.09%)",UPD-PK2,Pseudoknot of upstream pseudoknot domain (UPD) of the 3'UTR,Cis-reg;
RF01084,Viruses,Viruses (100.0%),"Viruses (94.12%), Eukaryota (5.88%)",TLS-PK3,Pseudoknot of tRNA-like structure,Cis-reg;
RF01085,Viruses,Viruses (100.0%),Viruses (100.0%),TLS-PK4,Pseudoknot of tRNA-like structure,Cis-reg;
RF01088,Viruses,Viruses (100.0%),Viruses (100.0%),TLS-PK5,Pseudoknot of tRNA-like structure,Cis-reg;
RF01091,Viruses/Mixed,Viruses (100.0%),"Viruses (87.5%), Eukaryota (12.5%)",PK-SPCSV,3'-terminal pseudoknot in SPCSV,Cis-reg;
RF01092,Viruses,Viruses (100.0%),Viruses (100.0%),GP_knot2,Gag/pol translational readthrough site,Cis-reg;
RF01094,Viruses,Viruses (100.0%),Viruses (100.0%),RF_site6,Polymerase ribosomal frameshift site,Cis-reg; frameshift_element;
RF01095,Viruses,Viruses (100.0%),Viruses (100.0%),PK-CuYV_BPYV,3'-terminal pseudoknot of CuYV/BPYV,Cis-reg;
RF01096,Viruses,Viruses (100.0%),Viruses (100.0%),PK-HAV,HepA virus 3'-terminal pseudoknot,Cis-reg;
RF01097,Viruses/Eukaryota,Viruses (100.0%),"Eukaryota (99.44%), Viruses (0.56%)",RF_site8,Gag/pro ribosomal frameshift site,Cis-reg; frameshift_element;
RF01098,Viruses/Mixed,Viruses (100.0%),"Eukaryota (50.0%), Viruses (50.0%)",RF_site9,Gag/pro ribosomal frameshift site,Cis-reg; frameshift_element;
RF01099,Viruses,Viruses (100.0%),Viruses (100.0%),PK-IAV,Pseudoknot of influenza A virus gene,Cis-reg;
RF01100,Viruses,Viruses (100.0%),Viruses (100.0%),PK-BYV,3'-terminal pseudoknot in BYV,Cis-reg;
RF01101,Viruses,Viruses (100.0%),Viruses (100.0%),TLS-PK6,Pseudoknot of tRNA-like structure,Cis-reg;
RF01102,Viruses/Mixed,Viruses (100.0%),"Viruses (66.67%), Eukaryota (33.33%)",PK1-TEV_CVMV,5'-leader pseudoknot of TEV/CVMV,Cis-reg; leader;
RF01103,Viruses,Viruses (100.0%),Viruses (100.0%),UPD-PKc,Pseudoknot of upstream pseudoknot domain (UPD) of the 3'UTR,Cis-reg;
RF01104,Viruses,Viruses (100.0%),Viruses (100.0%),SBWMV2_UPD-PKb,Pseudoknot of upstream pseudoknot domain (UPD) of the 3'UTR,Cis-reg;
RF01105,Viruses,Viruses (100.0%),Viruses (100.0%),SBWMV2_UPD-PKl,Pseudoknot of upstream pseudoknot domain (UPD) of the 3'UTR,Cis-reg;
RF01106,Viruses,Viruses (100.0%),Viruses (100.0%),SBWMV1_UPD-PKb,Pseudoknot of upstream pseudoknot domain (UPD) of the 3'UTR,Cis-reg;
RF01107,Viruses,Viruses (100.0%),Viruses (100.0%),SBRMV1_UPD-PKf,Pseudoknot of upstream pseudoknot domain (UPD) of the 3'UTR,Cis-reg;
RF01108,Viruses,Viruses (100.0%),Viruses (100.0%),BMV3_UPD-PK1,Pseudoknot of upstream pseudoknot domain (UPD) of the 3'UTR,Cis-reg;
RF01109,Viruses,Viruses (100.0%),Viruses (100.0%),SBRMV1_UPD-PKd,Pseudoknot of upstream pseudoknot domain (UPD) of the 3'UTR,Cis-reg;
RF01111,Viruses,Viruses (100.0%),Viruses (100.0%),SBWMV2_UPD-PKk,Pseudoknot of upstream pseudoknot domain (UPD) of the 3'UTR,Cis-reg;
RF01113,Viruses/Mixed,Viruses (100.0%),"Viruses (75.0%), Eukaryota (25.0%)",BMV3_UPD-PK3,Pseudoknot of upstream pseudoknot domain (UPD) of the 3'UTR,Cis-reg;
RF01114,Viruses/Mixed,Viruses (100.0%),"Viruses (75.0%), Bacteria (25.0%)",TMV_UPD-PK1,Pseudoknot of upstream pseudoknot domain (UPD) of the 3'UTR,Cis-reg;
RF01313,Viruses,Viruses (100.0%),Viruses (100.0%),AHBV_epsilon,Avian HBV RNA encapsidation signal epsilon,Cis-reg;
RF01380,Viruses/Mixed,Viruses (100.0%),"Viruses (50.0%), Eukaryota (20.83%), Bacteria (20.83%), Archaea (8.33%)",HIV-1_SD,Human immunodeficiency virus type 1 major splice donor,Cis-reg;
RF01381,Viruses,Viruses (100.0%),"Viruses (90.91%), Eukaryota (9.09%)",HIV-1_SL3,HIV-1 stem-loop 3 Psi packaging signal,Cis-reg;
RF01382,Viruses/Mixed,Viruses (100.0%),"Viruses (79.55%), Eukaryota (20.45%)",HIV-1_SL4,HIV-1 stem-loop 4 packaging signal,Cis-reg;
RF01415,Viruses,Viruses (100.0%),Viruses (100.0%),Flavivirus_SLIV,Flavivirus 3'UTR stem loop IV,Cis-reg;
RF01417,Viruses/Mixed,Viruses (100.0%),"Eukaryota (88.61%), Viruses (11.39%)",RSV_RNA,Retroviral 3'UTR stability element,Cis-reg;
RF01418,Viruses,Viruses (100.0%),Viruses (100.0%),HIV_POL-1_SL,HIV pol-1 stem loop,Cis-reg;
RF01453,Viruses,Viruses (100.0%),Viruses (100.0%),RCNMV_TE_DR1,3'TE-DR1 translation enhancer element,Cis-reg;
RF01454,Viruses,Viruses (100.0%),Viruses (100.0%),RCNMV_5UTR,5'UTR enhancer element,Cis-reg;
RF01508,Viruses,Viruses (100.0%),Viruses (100.0%),BYDV_5_UTR,Barley yellow dwarf virus 5'UTR,Cis-reg;
RF01516,Viruses,Viruses (100.0%),Viruses (100.0%),v-snoRNA-1,Human herpesvirus 1 small nucleolar RNA,Gene; snRNA; snoRNA; CD-box;
RF01768,Viruses,Viruses (100.0%),Viruses (100.0%),flavi_FSE,ribosomal frameshift site,Cis-reg; frameshift_element;
RF01785,Viruses/Mixed,Viruses (100.0%),"Viruses (75.0%), Eukaryota (25.0%)",blv_FSE,ribosomal frameshift site,Cis-reg; frameshift_element;
RF01789,Viruses,Viruses (100.0%),Viruses (100.0%),EBER1,Epstein-Barr virus EBER1,Gene; sRNA;
RF01790,Viruses,Viruses (100.0%),Viruses (100.0%),htlv_FSE,ribosomal frameshift site,Cis-reg; frameshift_element;
RF01792,Viruses,Viruses (100.0%),Viruses (100.0%),eiav_FSE,ribosomal frameshift site,Cis-reg; frameshift_element;
RF01802,Viruses,Viruses (100.0%),Viruses (100.0%),HSUR,Herpesvirus saimiri U RNA1/RNA2,Gene; snRNA;
RF01833,Viruses,Viruses (100.0%),Viruses (100.0%),astro_FSE,ribosomal frameshift site,Cis-reg; frameshift_element;
RF01834,Viruses,Viruses (100.0%),Viruses (100.0%),fiv_FSE,ribosomal frameshift site,Cis-reg; frameshift_element;
RF01835,Viruses,Viruses (100.0%),Viruses (100.0%),HIV_FS2,ribosomal frameshift site,Cis-reg; frameshift_element;
RF01836,Viruses/Mixed,Viruses (100.0%),"Viruses (77.78%), Bacteria (22.22%)",weev_FSE,ribosomal frameshift site,Cis-reg; frameshift_element;
RF01837,Viruses,Viruses (100.0%),Viruses (100.0%),toga_FSE,togavirus ribosomal frameshift element,Cis-reg; frameshift_element;
RF01838,Viruses,Viruses (100.0%),Viruses (100.0%),sobemo_FSE,sobemovirus ribosomal frameshift elemental,Cis-reg; frameshift_element;
RF01839,Viruses,Viruses (100.0%),Viruses (100.0%),eeev_FSE,eastern equine encephalitis ribosomal frameshift element,Cis-reg; frameshift_element;
RF01840,Viruses,Viruses (100.0%),Viruses (100.0%),ovine_lenti_FSE,ribosomal frameshift element,Cis-reg; frameshift_element;
RF01841,Viruses,Viruses (100.0%),Viruses (100.0%),veev_FSE,venezuelan equine encephalitis virus ribosomal frameshift element,Cis-reg; frameshift_element;
RF01852,Mixed,"Bacteria (68.81%), Eukaryota (29.36%), Archaea (1.83%)","Bacteria (73.5%), Eukaryota (25.86%), Archaea (0.43%), Viruses (0.22%)",tRNA-Sec,Selenocysteine transfer RNA,Gene; tRNA;
RF01940,Viruses,Viruses (100.0%),Viruses (100.0%),hvt-mir-H,microRNA hvt-mir-H9,Gene; miRNA;
RF02340,Viruses/Mixed,Viruses (100.0%),"Viruses (89.29%), Other (9.52%), Eukaryota (1.19%)",DENV_SLA,Dengue virus SLA,Cis-reg;
RF02359,Viruses,Viruses (100.0%),Viruses (100.0%),MS2,Bacteriophage MS2 operator hairpin,Cis-reg;
RF02416,Viruses,Viruses (100.0%),Viruses (100.0%),TCV_H4,Turnip crinkle virus 3'UTR,Cis-reg;
RF02455,Viruses,Viruses (100.0%),Viruses (100.0%),Virus_CITE_1,Dianthovirus RNA2 cap-independent translation element,Cis-reg;
RF02456,Viruses,Viruses (100.0%),Viruses (100.0%),Diantho_3_UTR,Dianthovirus RNA2 3'UTR stem loops,Cis-reg;
RF02457,Viruses,Viruses (100.0%),Viruses (100.0%),Virus_CITE_2,Tombusvirus 3' cap-independent translation element,Cis-reg;
RF02458,Viruses,Viruses (100.0%),Viruses (100.0%),Virus_CITE_3,Aureusvirus cap-independent translation element,Cis-reg;
RF02459,Viruses,Viruses (100.0%),Viruses (100.0%),Virus_CITE_4,Necrovirus cap-independent translation element,Cis-reg;
RF02460,Viruses,Viruses (100.0%),Viruses (100.0%),Virus_CITE_5,Satellite tobacco necrosis virus cap-independent translation element,Cis-reg;
RF02461,Viruses,Viruses (100.0%),Viruses (100.0%),Virus_CITE_6,Blackcurrant reversion virus cap-independent translation element,Cis-reg;
RF02521,Viruses,Viruses (100.0%),Viruses (100.0%),Virus_CITE_7,Pea enation mosaic virus-2 cap-independent translation element,Cis-reg;
RF02522,Viruses,Viruses (100.0%),Viruses (100.0%),Virus_CITE_8,Pea enation mosaic virus-2 cap-independent translation element,Cis-reg;
RF02532,Viruses,Viruses (100.0%),Viruses (100.0%),MNV_3UTR,Murine norovirus 3'UTR,Cis-reg;
RF02533,Viruses,Viruses (100.0%),Viruses (100.0%),HAV_CRE,Hepatitis A virus (HAV) cis-acting replication element (CRE),Cis-reg;
RF02534,Viruses,Viruses (100.0%),"Viruses (95.45%), Eukaryota (4.55%)",Noro_CRE,Norovirus cis-acting replication element (CRE),Cis-reg;
RF02536,Viruses,Viruses (100.0%),Viruses (100.0%),AEV_CRE,Avian encephalitis virus (AEV) cis-acting replication element (CRE),Cis-reg;
RF02595,Viruses,Viruses (100.0%),Viruses (100.0%),EBv-sisRNA-1,Epstein-Barr virus stable intronic sequence RNA 1,Gene;
RF02598,Viruses/Mixed,Viruses (100.0%),"Viruses (72.6%), Eukaryota (26.03%), Bacteria (1.37%)",EBv-sisRNA-2,Epstein-Barr virus stable intronic sequence RNA 2,Gene;
RF02658,Viruses,Viruses (100.0%),Viruses (100.0%),IRES_RhPV,Rhopalosiphum padi virus 5'UTR internal ribosome entry site,Cis-reg; IRES;
RF02712,Viruses,Viruses (100.0%),Viruses (100.0%),EBER2,Epstein-Barr virus EBER2,Gene; sRNA;
RF02816,Viruses,Viruses (100.0%),Viruses (100.0%),HBV_PRE_1151-1410,Hepatitis B virus post-transcriptional regulatory element 1151-1410,Cis-reg;
RF02897,Mixed/Viruses,"Viruses (75.0%), Bacteria (25.0%)","Viruses (92.31%), Bacteria (7.69%)",S808,Staphylococcus sRNA 808,Gene; sRNA;
RF02911,Viruses,Viruses (100.0%),Viruses (100.0%),Baculoviridae_NAE,Baculoviridae Nucleocapsid Assembly essential Element,Cis-reg;
RF03116,Viruses,Viruses (100.0%),Viruses (100.0%),aCoV-5UTR,Alphacoronavirus 5'UTR,Cis-reg;
RF03117,Viruses,Viruses (100.0%),Viruses (100.0%),bCoV-5UTR,Betacoronavirus 5'UTR,Cis-reg;
RF03118,Viruses,Viruses (100.0%),Viruses (100.0%),gCoV-5UTR,Gammacoronavirus 5'UTR,Cis-reg;
RF03119,Viruses,Viruses (100.0%),Viruses (100.0%),dCoV-5UTR,Deltacoronavirus 5'UTR,Cis-reg;
RF03120,Viruses,Viruses (100.0%),Viruses (100.0%),Sarbecovirus-5UTR,Sarbecovirus 5'UTR,Cis-reg;
RF03121,Viruses,Viruses (100.0%),Viruses (100.0%),aCoV-3UTR,Alphacoronavirus 3'UTR,Cis-reg;
RF03122,Viruses,Viruses (100.0%),Viruses (100.0%),bCoV-3UTR,Betacoronavirus 3'UTR,Cis-reg;
RF03123,Viruses,Viruses (100.0%),Viruses (100.0%),gCoV-3UTR,Gammacoronavirus 3'UTR,Cis-reg;
RF03124,Viruses,Viruses (100.0%),Viruses (100.0%),dCoV-3UTR,Deltacoronavirus 3'UTR,Cis-reg;
RF03125,Viruses,Viruses (100.0%),Viruses (100.0%),Sarbecovirus-3UTR,Sarbecovirus 3'UTR,Cis-reg;
RF03200,Viruses,Viruses (100.0%),Viruses (100.0%),mir-BART13,mir-BART13 microRNA precursor family,Gene; miRNA;
RF03216,Viruses,Viruses (100.0%),Viruses (100.0%),mir-BART10,mir-BART10 microRNA precursor family,Gene; miRNA;
RF03233,Viruses,Viruses (100.0%),Viruses (100.0%),hvt-mir-H16,hvt-mir-H16 microRNA precursor family,Gene; miRNA;
RF03294,Viruses,Viruses (100.0%),Viruses (100.0%),mir-H3,mir-H3 microRNA precursor family,Gene; miRNA;
RF03484,Viruses,Viruses (100.0%),Viruses (100.0%),mir-K12-10,mir-K12-10 microRNA precursor family,Gene; miRNA;
RF03539,Viruses,Viruses (100.0%),Viruses (100.0%),Flavi_NKV_xrRNA,No-known vector Flavivirus exoribonuclease-resistant RNA element,Cis-reg;
RF03540,Viruses,Viruses (100.0%),Viruses (100.0%),Flavi_NKV_CRE,No-Known-Vector Flavivirus 3' UTR cis-acting replication element (CRE),Cis-reg;
RF03541,Viruses,Viruses (100.0%),Viruses (100.0%),Flavi_ISFV_xrRNA,Insect-specific Flavivirus exoribonuclease-resistant RNA element,Cis-reg;
RF03542,Viruses,Viruses (100.0%),Viruses (100.0%),Flavi_ISFV_repeat_Ra_Rb,Insect-Specific Flavivirus 3' UTR repeats Ra and Rb elements,Cis-reg;
RF03543,Viruses,Viruses (100.0%),Viruses (100.0%),Flavi_ISFV_repeat_Rb,Insect-Specific Flavivirus 3' UTR repeats Rb,Cis-reg;
RF03544,Viruses,Viruses (100.0%),Viruses (100.0%),Flavi_ISFV_repeat_Ra,Insect-Specific Flavivirus 3' UTR repeats Ra,Cis-reg;
RF03546,Viruses,Viruses (100.0%),Viruses (100.0%),Flavivirus-5UTR,Flavivirus 5' UTR,Cis-reg;
RF03547,Viruses,Viruses (100.0%),Viruses (100.0%),Flavi_xrRNA,General Flavivirus exoribonuclease-resistant RNA element,Cis-reg;
RF03563,Viruses,Viruses (100.0%),Viruses (100.0%),mir-BART16,mir-BART16 microRNA precursor family,Gene; miRNA;
RF03575,Viruses,Viruses (100.0%),Viruses (100.0%),mir-rL1-14,mir-rL1-14 microRNA precursor family,Gene; miRNA;
RF03582,Viruses,Viruses (100.0%),Viruses (100.0%),mir-m22-1,mir-m22-1 microRNA precursor family,Gene; miRNA;
RF03610,Viruses,Viruses (100.0%),Viruses (100.0%),mir-H7,mir-H7 microRNA precursor family,Gene; miRNA;
RF03726,Viruses,Viruses (100.0%),Viruses (100.0%),mir-m21-1,mir-m21-1 microRNA precursor family,Gene; miRNA;
RF03733,Viruses,Viruses (100.0%),Viruses (100.0%),mir-BART14,mir-BART14 microRNA precursor family,Gene; miRNA;
RF03805,Viruses,Viruses (100.0%),Viruses (100.0%),bpcv-mir-B1,bpcv-mir-B1 microRNA precursor family,Gene; miRNA;
RF03812,Viruses,Viruses (100.0%),Viruses (100.0%),mir-BART19,mir-BART19 microRNA precursor family,Gene; miRNA;
RF03819,Viruses/Mixed,Viruses (100.0%),"Viruses (80.0%), Bacteria (20.0%)",mir-Ro6-3,mir-Ro6-3 microRNA precursor family,Gene; miRNA;
RF03832,Viruses,Viruses (100.0%),Viruses (100.0%),mir-H4,mir-H4 microRNA precursor family,Gene; miRNA;
RF03864,Viruses,Viruses (100.0%),Viruses (100.0%),mir-BART9,mir-BART9 microRNA precursor family,Gene; miRNA;
RF03868,Viruses,Viruses (100.0%),Viruses (100.0%),mir-H2,mir-H2 microRNA precursor family,Gene; miRNA;
RF03878,Viruses,Viruses (100.0%),Viruses (100.0%),mir-B6,mir-B6 microRNA precursor family,Gene; miRNA;
RF03890,Viruses,Viruses (100.0%),Viruses (100.0%),mir-B8,mir-B8 microRNA precursor family,Gene; miRNA;
RF03901,Viruses,Viruses (100.0%),Viruses (100.0%),mir-BART18,mir-BART18 microRNA precursor family,Gene; miRNA;
RF03910,Viruses,Viruses (100.0%),Viruses (100.0%),mir-H5,mir-H5 microRNA precursor family,Gene; miRNA;
RF03914,Viruses,Viruses (100.0%),Viruses (100.0%),mir-BART21,mir-BART21 microRNA precursor family,Gene; miRNA;
RF03934,Viruses,Viruses (100.0%),Viruses (100.0%),mir-m107-1,mir-m107-1 microRNA precursor family,Gene; miRNA;
RF03964,Viruses,Viruses (100.0%),Viruses (100.0%),mir-H1,mir-H1 microRNA precursor family,Gene; miRNA;
RF04076,Viruses,Viruses (100.0%),Viruses (100.0%),mir-H11,mir-H11 microRNA precursor family,Gene; miRNA;
RF04218,Viruses,Viruses (100.0%),Viruses (100.0%),HCV_5BSL1,Hepatitis C virus stem-loop I,Cis-reg;
RF04219,Viruses,Viruses (100.0%),Viruses (100.0%),HCV_J750,J750 non-coding RNA (containing SLSL761 and SL783),Cis-reg;
RF04220,Viruses,Viruses (100.0%),Viruses (100.0%),HCV_SL588,SL588 non-coding RNA,Cis-reg;
RF04221,Viruses,Viruses (100.0%),Viruses (100.0%),HCV_SL669,SL669 non-coding RNA,Cis-reg;
RF04222,Viruses/Mixed,Viruses (100.0%),"Viruses (82.5%), Eukaryota (17.5%)",PLRV_xrRNA,Flavivirus Potato leading responsible virus exoribonuclease-resistant RNA,Cis-reg;
RF04279,Viruses,Viruses (100.0%),Viruses (100.0%),mir-H20,mir-H20 microRNA precursor family,Gene; miRNA;