{
 "cells": [
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "Before you turn this problem in, make sure everything runs as expected. First, **restart the kernel** (in the menubar, select Kernel$\\rightarrow$Restart) and then **run all cells** (in the menubar, select Cell$\\rightarrow$Run All).\n",
    "\n",
    "Make sure you fill in any place that says `YOUR CODE HERE` or \"YOUR ANSWER HERE\", as well as your name and collaborators below:"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "NAME = \"\"\n",
    "COLLABORATORS = \"\""
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "---"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "<!--NOTEBOOK_HEADER-->\n",
    "*This notebook contains material from [PyRosetta](https://RosettaCommons.github.io/PyRosetta.notebooks);\n",
    "content is available [on Github](https://github.com/RosettaCommons/PyRosetta.notebooks.git).*"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "<!--NAVIGATION-->\n",
    "< [PyRosetta Google Drive Setup](http://nbviewer.jupyter.org/github/RosettaCommons/PyRosetta.notebooks/blob/master/notebooks/01.01-PyRosetta-Google-Drive-Setup.ipynb) | [Contents](toc.ipynb) | [Index](index.ipynb) | [How to Get PyRosetta on Your Personal Computer](http://nbviewer.jupyter.org/github/RosettaCommons/PyRosetta.notebooks/blob/master/notebooks/01.03-How-to-Get-Local-PyRosetta.ipynb) ><p><a href=\"https://colab.research.google.com/github/RosettaCommons/PyRosetta.notebooks/blob/master/notebooks/01.02-PyRosetta-Google-Drive-Usage-Example.ipynb\"><img align=\"left\" src=\"https://colab.research.google.com/assets/colab-badge.svg\" alt=\"Open in Colab\" title=\"Open in Google Colaboratory\"></a>"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "# PyRosetta Google Drive Usage Example"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "After installing PyRosetta in Colab, here is an example for how you would initialize PyRosetta in Colab and use it."
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {
    "colab": {},
    "colab_type": "code",
    "id": "m1KtbxmLzV5p"
   },
   "outputs": [],
   "source": [
    "# Notebook setup\n",
    "import sys\n",
    "if 'google.colab' in sys.modules:\n",
    "    !pip install pyrosettacolabsetup\n",
    "    import pyrosettacolabsetup\n",
    "    pyrosettacolabsetup.setup()\n",
    "    print (\"Notebook is set for PyRosetta use in Colab.  Have fun!\")"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {
    "colab": {},
    "colab_type": "code",
    "id": "O4-UKoGw1CbX"
   },
   "outputs": [],
   "source": [
    "from pyrosetta import *\n",
    "pyrosetta.init()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {
    "colab": {},
    "colab_type": "code",
    "id": "GMsbR0atbGzM"
   },
   "outputs": [],
   "source": [
    "test = Pose() # to check that it works"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "<!--NAVIGATION-->\n",
    "< [PyRosetta Google Drive Setup](http://nbviewer.jupyter.org/github/RosettaCommons/PyRosetta.notebooks/blob/master/notebooks/01.01-PyRosetta-Google-Drive-Setup.ipynb) | [Contents](toc.ipynb) | [Index](index.ipynb) | [How to Get PyRosetta on Your Personal Computer](http://nbviewer.jupyter.org/github/RosettaCommons/PyRosetta.notebooks/blob/master/notebooks/01.03-How-to-Get-Local-PyRosetta.ipynb) ><p><a href=\"https://colab.research.google.com/github/RosettaCommons/PyRosetta.notebooks/blob/master/notebooks/01.02-PyRosetta-Google-Drive-Usage-Example.ipynb\"><img align=\"left\" src=\"https://colab.research.google.com/assets/colab-badge.svg\" alt=\"Open in Colab\" title=\"Open in Google Colaboratory\"></a>"
   ]
  }
 ],
 "metadata": {
  "colab": {
   "collapsed_sections": [],
   "name": "_PyRosetta on google drive usage example.ipynb",
   "provenance": [
    {
     "file_id": "1T_Nh8rTpXVfqbQ0PwWwjzn30gQDVj4cF",
     "timestamp": 1563909512528
    }
   ],
   "version": "0.3.2"
  },
  "kernelspec": {
   "display_name": "Python 3",
   "language": "python",
   "name": "python3"
  },
  "language_info": {
   "codemirror_mode": {
    "name": "ipython",
    "version": 3
   },
   "file_extension": ".py",
   "mimetype": "text/x-python",
   "name": "python",
   "nbconvert_exporter": "python",
   "pygments_lexer": "ipython3",
   "version": "3.6.0"
  },
  "toc": {
   "base_numbering": 1,
   "nav_menu": {},
   "number_sections": true,
   "sideBar": true,
   "skip_h1_title": false,
   "title_cell": "Table of Contents",
   "title_sidebar": "Contents",
   "toc_cell": false,
   "toc_position": {},
   "toc_section_display": true,
   "toc_window_display": false
  }
 },
 "nbformat": 4,
 "nbformat_minor": 1
}