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   "source": [
    "<!--NOTEBOOK_HEADER-->\n",
    "*This notebook contains material from [PyRosetta](https://RosettaCommons.github.io/PyRosetta.notebooks);\n",
    "content is available [on Github](https://github.com/RosettaCommons/PyRosetta.notebooks.git).*"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "<!--NAVIGATION-->\n",
    "< [How to Get Started](http://nbviewer.jupyter.org/github/RosettaCommons/PyRosetta.notebooks/blob/master/notebooks/01.00-How-to-Get-Started.ipynb) | [Contents](toc.ipynb) | [Index](index.ipynb) | [Jupyter Notebooks, Python, and Google Colaboratory](http://nbviewer.jupyter.org/github/RosettaCommons/PyRosetta.notebooks/blob/master/notebooks/01.02-Notebooks-Python-Colab.ipynb) ><p><a href=\"https://colab.research.google.com/github/RosettaCommons/PyRosetta.notebooks/blob/master/notebooks/01.01-How-to-Get-Local-PyRosetta.ipynb\"><img align=\"left\" src=\"https://colab.research.google.com/assets/colab-badge.svg\" alt=\"Open in Colab\" title=\"Open in Google Colaboratory\"></a>"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "# How to Get PyRosetta on Your Personal Computer"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "## Download the main necessary packages to work locally on your machine"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "### Python 3.9 (and preferably IPython for tab-completion)"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "Select the latest Python-3.9.x version to download from https://www.python.org/downloads/. For IPython, you should be able to type `pip install ipython` in your terminal."
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "### PyMOL \n"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "Here is the link to the free educational version: https://pymol.org/edu/?q=educational/. "
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "### PyRosetta-3.9.Release"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "1) Go to https://els.comotion.uw.edu/licenses/88 and fill out the form for a free academic license for PyRosetta\n",
    "\n",
    "2) Download PyRosetta correct PyRosetta-wheel (ie version that match your operation system and Python version) from https://www.pyrosetta.org/downloads and use your terminal to execute `pip install <downloaded-wheel>` ((you may need to add sudo before the `pip` part if your computer says you don’t have permission)\n",
    "\n"
   ]
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  {
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   "metadata": {},
   "source": [
    "<!--NAVIGATION-->\n",
    "< [How to Get Started](http://nbviewer.jupyter.org/github/RosettaCommons/PyRosetta.notebooks/blob/master/notebooks/01.00-How-to-Get-Started.ipynb) | [Contents](toc.ipynb) | [Index](index.ipynb) | [Jupyter Notebooks, Python, and Google Colaboratory](http://nbviewer.jupyter.org/github/RosettaCommons/PyRosetta.notebooks/blob/master/notebooks/01.02-Notebooks-Python-Colab.ipynb) ><p><a href=\"https://colab.research.google.com/github/RosettaCommons/PyRosetta.notebooks/blob/master/notebooks/01.01-How-to-Get-Local-PyRosetta.ipynb\"><img align=\"left\" src=\"https://colab.research.google.com/assets/colab-badge.svg\" alt=\"Open in Colab\" title=\"Open in Google Colaboratory\"></a>"
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  }
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