project_name publication_year publication_doi site_name latitude longitude geo_loc_name sample_name sample_host sample_age sample_age_doi singlegenome_domain singlegenome_species material genome_type archive data_type archive_project archive_accession Schuenemann2013 2013 10.1126/science.1238286 Sigtuna 59.618 17.726 Sweden 3077 Homo sapiens 900 10.1126/science.1238286 bacteria Mycobacterium leprae bone chromosome SRA raw PRJNA200950 SRS418834 Schuenemann2013 2013 10.1126/science.1238286 St. Jørgen cemetery, Odense 55.399 10.406 Denmark Jorgen_625 Homo sapiens 600 10.1126/science.1238286 bacteria Mycobacterium leprae tooth chromosome SRA raw PRJNA200950 SRS418854 Schuenemann2013 2013 10.1126/science.1238286 Refshale 56.193 9.394 Denmark Refshale_16 Homo sapiens 900 10.1126/science.1238286 bacteria Mycobacterium leprae tooth chromosome SRA raw PRJNA200950 SRS419262,SRS418858,SRS418859 Schuenemann2013 2013 10.1126/science.1238286 St. Mary Magdalene leprosarium, Winchester 51.059 -1.308 United Kingdom SK2 Homo sapiens 700 10.1126/science.1238286 bacteria Mycobacterium leprae bone chromosome SRA raw PRJNA200950 SRS418843 Schuenemann2013 2013 10.1126/science.1238286 St. Mary Magdalene leprosarium, Winchester 51.059 -1.308 United Kingdom SK8 Homo sapiens 1000 10.1126/science.1238286 bacteria Mycobacterium leprae tooth chromosome SRA raw PRJNA200950 SRS418845 Schuenemann2018 2018 10.1371/journal.ppat.1006997 Szentes-Kistőke 46.715 20.281 Hungary SK11 Homo sapiens 1300 10.1016/j.meegid.2015.02.001 bacteria Mycobacterium leprae bone chromosome SRA raw PRJNA417381 SRS2667046 Schuenemann2018 2018 10.1371/journal.ppat.1006997 Necropoli Vicenne Campochiaro 41.564 14.498 Italy T18 Homo sapiens 1300 10.1016/j.meegid.2015.02.001 bacteria Mycobacterium leprae bone chromosome SRA raw PRJNA417381 SRS2667044 Schuenemann2018 2018 10.1371/journal.ppat.1006997 Prušánky 48.831 16.982 Czech Republic Body 188 Homo sapiens 1100 10.1016/j.meegid.2015.02.001 bacteria Mycobacterium leprae bone chromosome SRA raw PRJNA417381 SRS2667047 Schuenemann2018 2018 10.1371/journal.ppat.1006997 Great Chesterford 52.063 0.193 United Kingdom GC96 Homo sapiens 1500 10.1371/journal.pone.0124282 bacteria Mycobacterium leprae bone chromosome SRA raw PRJNA417381 SRS2667045 Warinner2014 2014 10.1038/ng.2906 Dalheim 51.565 8.84 Germany G12 Homo sapiens 900 10.1038/ng.2906 bacteria Tannerella forsythia tooth chromosome SRA raw PRJNA216965 SRS473747,SRS473746,SRS473748,SRS473749,SRS473750 Bos2014 2014 10.1038/nature13591 El Yaral -17.41 -71.092 Peru 64 Homo sapiens 900 10.1038/nature13591 bacteria Mycobacterium pinnipedii bone chromosome SRA raw PRJNA244165 SRS592075 Bos2014 2014 10.1038/nature13591 El Algodonal -17.583 -71.21 Peru 58 Homo sapiens 1000 10.1038/nature13591 bacteria Mycobacterium pinnipedii bone chromosome SRA raw PRJNA244165 SRS591992 Bos2014 2014 10.1038/nature13591 Chiribaya Alta -17.621 -71.269 Peru 54 Homo sapiens 900 10.1038/nature13591 bacteria Mycobacterium pinnipedii bone chromosome SRA raw PRJNA244165 SRS591994 AndradesValtuena2017 2017 10.1016/j.cub.2017.10.025 Rasshevatskiy 45.569 41.03 Russia RK1001 Homo sapiens 4200 10.1016/j.cub.2017.10.025 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB19335 ERS1892069 AndradesValtuena2017 2017 10.1016/j.cub.2017.10.025 Beli Manastir-Popova zemlja 45.77 18.61 Croatia GEN72 Homo sapiens 4200 10.1016/j.cub.2017.10.025 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB19335 ERS1892068 AndradesValtuena2017 2017 10.1016/j.cub.2017.10.025 Gyvakarai 55.913 24.89 Lithuania Gyvakarai1 Homo sapiens 4000 10.1016/j.cub.2017.10.025 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB19335 ERS1892064 AndradesValtuena2017 2017 10.1016/j.cub.2017.10.025 Kunila 58.616 23.796 Estonia KunilaII Homo sapiens 4000 10.1016/j.cub.2017.10.025 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB19335 ERS1892065 AndradesValtuena2017 2017 10.1016/j.cub.2017.10.025 Haunstetten Unterer Talweg 85 48.318 10.891 Germany 1343UnTal85 Homo sapiens 3800 10.1371/journal.pone.0139705 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB19335 ERS1892067 AndradesValtuena2017 2017 10.1016/j.cub.2017.10.025 Haunstetten Postillionstrasse 6 48.308 10.893 Germany 6Post Homo sapiens 3600 10.1371/journal.pone.0139705 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB19335 ERS1892066 Spyrou2018 2018 10.1038/s41467-018-04550-9 Mikhailovsky II burial site 53.2 50.2 Russia RT5 Homo sapiens 3500 10.1038/s41467-018-04550-9 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB24296 ERS2106903 Spyrou2018 2018 10.1038/s41467-018-04550-9 Mikhailovsky II burial site 53.2 50.2 Russia RT6 Homo sapiens 3500 10.1038/s41467-018-04550-9 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB24296 ERS2106904 Rascovan2019 2019 10.1016/j.cell.2018.11.005 Gökhem 94:1, Frälsegården 58.173 13.407 Sweden Gok2 Homo sapiens 4400 10.1016/j.cell.2018.11.005 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB6090 ERS434180 Rasmussen2015 2015 10.1016/j.cell.2015.10.009 Sope 59.408 27.026 Estonia RISE00 Homo sapiens 4000 10.1038/nature14507 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB10885 ERS848971 Rasmussen2015 2015 10.1016/j.cell.2015.10.009 Chociwel 50.796 17.094 Poland RISE139 Homo sapiens 3600 10.1038/nature14507 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB10885 ERS848972 Rasmussen2015 2015 10.1016/j.cell.2015.10.009 Bulanovo 52.453 55.16 Russia RISE386 Homo sapiens 3800 10.1038/nature14507 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB10885 ERS848973 Rasmussen2015 2015 10.1016/j.cell.2015.10.009 Kapan 39.2 46.4 Armenia RISE397 Homo sapiens 2800 10.1038/nature14507 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB10885 ERS848974 Rasmussen2015 2015 10.1016/j.cell.2015.10.009 Kytmanovo 53.456 85.447 Russia RISE505 Homo sapiens 3400 10.1038/nature14507 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB10885 ERS848975 Rasmussen2015 2015 10.1016/j.cell.2015.10.009 Bateni 54.584 90.775 Russia RISE509 Homo sapiens 4200 10.1038/nature14507 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB10885 ERS848976 Rasmussen2015 2015 10.1016/j.cell.2015.10.009 Bateni 54.584 90.775 Russia RISE511 Homo sapiens 2900 10.1038/nature14507 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB10885 ERS848977 Yu2020 2020 10.1016/j.cell.2020.04.037 Glazkovskoe Predmestie Site 52.279 104.251 Russia GLZ001 Homo sapiens 4600 10.1016/j.cell.2020.04.037 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB37007 ERS4540520 Yu2020 2020 10.1016/j.cell.2020.04.037 Glazkovskoe Predmestie Site 52.279 104.251 Russia GLZ002 Homo sapiens 4400 10.1016/j.cell.2020.04.037 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB37007 ERS4540521 Devault2017 2017 10.7554/eLife.20983 Troy 39.953 26.236 Turkey Nod1 Homo sapiens 800 10.7554/eLife.20983 bacteria Gardnerella vaginalis calcified nodule chromosome SRA raw PRJNA352376 SRS1779841,SRS1779840 Devault2017 2017 10.7554/eLife.20983 Troy 39.953 26.236 Turkey Nod1 Homo sapiens 800 10.7554/eLife.20983 bacteria Staphylococcus saprophyticus calcified nodule chromosome SRA raw PRJNA352376 SRS1779841,SRS1779840 Devault2017 2017 10.7554/eLife.20983 Troy 39.953 26.236 Turkey Nod2 Homo sapiens 800 10.7554/eLife.20983 bacteria Gardnerella vaginalis calcified nodule chromosome SRA raw PRJNA352376 SRS1779846,SRS1779844 Devault2017 2017 10.7554/eLife.20983 Troy 39.953 26.236 Turkey Nod2 Homo sapiens 800 10.7554/eLife.20983 bacteria Staphylococcus saprophyticus calcified nodule chromosome SRA raw PRJNA352376 SRS1779846,SRS1779844 Muhlemann2018 2018 10.1038/s41586-018-0097-z Bulanovo 52.453 55.16 Russia RISE387 Homo sapiens 3800 10.1038/s41586-018-0097-z virus Hepatitis B virus tooth chromosome GenBank consensus,assembly PRJEB25584 LT992447 Muhlemann2018 2018 10.1038/s41586-018-0097-z Sandorfalva-Eperjes 46.344 20.162 Hungary DA195 Homo sapiens 2500 10.1038/s41586-018-0097-z virus Hepatitis B virus unknown chromosome GenBank consensus,assembly PRJEB25584 LT992441 Muhlemann2018 2018 10.1038/s41586-018-0097-z Osterhofen-Altenmarkt 48.691 13.061 Germany RISE563 Homo sapiens 4000 10.1038/s41586-018-0097-z virus Hepatitis B virus tooth chromosome GenBank consensus,assembly PRJEB25584 LT992443 Muhlemann2018 2018 10.1038/s41586-018-0097-z Szàzhalombatta-Földvàr 47.372 18.962 Hungary RISE254 Homo sapiens 3600 10.1038/s41586-018-0097-z virus Hepatitis B virus bone chromosome GenBank consensus,assembly PRJEB25584 LT992459 Muhlemann2018 2018 10.1038/s41586-018-0097-z Karasyur 46.997 66.285 Kazakhstan DA29 Homo sapiens 800 10.1038/s41586-018-0097-z virus Hepatitis B virus unknown chromosome GenBank consensus,assembly PRJEB25584 LT992438 Muhlemann2018 2018 10.1038/s41586-018-0097-z Halvay 3 52.836 62.893 Kazakhstan DA27 Homo sapiens 1600 10.1038/s41586-018-0097-z virus Hepatitis B virus unknown chromosome GenBank consensus,assembly PRJEB25584 LT992439 Muhlemann2018 2018 10.1038/s41586-018-0097-z Poprad 49.077 20.317 Slovakia DA119 Homo sapiens 1500 10.1038/s41586-018-0097-z virus Hepatitis B virus unknown chromosome GenBank consensus,assembly PRJEB25584 LT992440 Muhlemann2018 2018 10.1038/s41586-018-0097-z Omnogobi 42.525 105.18 Mongolia DA45 Homo sapiens 2000 10.1038/s41586-018-0097-z virus Hepatitis B virus bone chromosome GenBank consensus,assembly PRJEB25584 LT992442 Muhlemann2018 2018 10.1038/s41586-018-0097-z Szczepankowice 50.948 16.943 Poland RISE154 Homo sapiens 3500 10.1038/s41586-018-0097-z virus Hepatitis B virus tooth chromosome GenBank consensus,assembly PRJEB25584 LT992455 Muhlemann2018 2018 10.1038/s41586-018-0097-z Keden 41.428 75.329 Kyrgyzstan DA51 Homo sapiens 2200 10.1038/s41586-018-0097-z virus Hepatitis B virus unknown chromosome GenBank consensus,assembly PRJEB25584 LT992444 Muhlemann2018 2018 10.1038/s41586-018-0097-z Bulanovo 52.453 55.16 Russia RISE386 Homo sapiens 3800 10.1038/s41586-018-0097-z virus Hepatitis B virus tooth chromosome GenBank consensus,assembly PRJEB25584 LT992448 Muhlemann2018 2018 10.1038/s41586-018-0097-z Butakty 43.202 76.981 Kazakhstan DA222 Homo sapiens 1100 10.1038/s41586-018-0097-z virus Hepatitis B virus unknown chromosome GenBank consensus,assembly PRJEB25584 LT992454 Dux2020 2020 10.1126/science.aba9411 Berlin 52.51 13.4 Germany BMM 655/1912 Homo sapiens 100 10.1126/science.aba9411 virus Measles morbillivirus lung tissue chromosome ENA raw PRJEB36265 ERS4249335 Dux2020 2020 10.1126/science.aba9411 Prague 50.06 14.46 Czech Republic MVi/Prague.CZE/60/1 Homo sapiens 100 10.1126/science.aba9411 virus Measles morbillivirus isolate chromosome ENA raw PRJEB36265 ERS4249362 Dux2020 2020 10.1126/science.aba9411 Prague 50.06 14.46 Czech Republic Mvi/Prague.CZE/60/2 Homo sapiens 100 10.1126/science.aba9411 virus Measles morbillivirus isolate chromosome ENA raw PRJEB36265 ERS4249363 Maixner2016 2016 10.1126/science.aad2545 Hauslabjoch 46.773 10.837 Italy Iceman Stomach/Intestine (1054/1051/1063/1036) Homo sapiens 5300 10.1126/science.aad2545 bacteria Helicobacter pylori digestive tract contents chromosome ENA raw PRJEB11511 ERS942275,ERS942266,ERS942283,ERS942284,ERS942285,ERS942286,ERS942287,ERS942288,ERS942289,ERS942290,ERS942291,ERS942292,ERS942293,ERS942294,ERS942267,ERS942277,ERS942270,ERS942274,ERS942269,ERS942268,ERS942271,ERS942265,ERS942273,ERS942272,ERS942281,ERS942282 Guellil2018 2018 10.1073/pnas.1807266115 St Nicolay’s ALT St Clement's Church, Oslo 59.904 10.765 Norway OSL9a Homo sapiens 400 10.1073/pnas.1807266115 bacteria Borrelia recurrentis tooth chromosome ENA raw PRJEB24501 ERS2591211 Guellil2018 2018 10.1073/pnas.1807266115 St Nicolay’s ALT St Clement's Church, Oslo 59.904 10.765 Norway OSL9b Homo sapiens 400 10.1073/pnas.1807266116 bacteria Borrelia recurrentis tooth chromosome ENA raw PRJEB24501 ERS2591210 Duggan2016 2016 10.1016/j.cub.2016.10.061 Dominican Church of the Holy Spirit of Vilnius 54.681 25.284 Lithuania VD21 Homo sapiens 300 10.1016/j.cub.2016.10.061 virus Variola virus skin chromosome SRA raw PRJNA348754 SRS1749354 deBarrosDamgaard2018 2018 10.1038/s41586-018-0094-2 Uch-Kurbu 42.159 77.406 Kyrgyzstan DA101 Homo sapiens 1800 10.1038/s41586-018-0094-2 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB25891 ERS2367268 deBarrosDamgaard2018 2018 10.1038/s41586-018-0094-2 Unknown 42.861 44.185 Russia DA147 Homo sapiens 1300 10.1038/s41586-018-0094-2 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB25891 ERS2367269 Key2020 2020 10.1038/s41559-020-1106-9 Murzikhinsky II 55.304 50.086 Russia MUR009 Homo sapiens 5700 10.1038/s41559-020-1106-9 bacteria Salmonella enterica tooth chromosome ENA raw PRJEB35216 ERS3967963 Key2020 2020 10.1038/s41559-020-1106-9 Murzikhinsky II 55.304 50.086 Russia MUR019 Homo sapiens 5600 10.1038/s41559-020-1106-9 bacteria Salmonella enterica tooth chromosome ENA raw PRJEB35216 ERS3967964 Key2020 2020 10.1038/s41559-020-1106-9 Ipatovo 3 45.685 42.921 Russia IV3002 Homo sapiens 4600 10.1038/s41559-020-1106-9 bacteria Salmonella enterica tooth chromosome ENA raw PRJEB35216 ERS3967967 Key2020 2020 10.1038/s41559-020-1106-9 Ikiztepe 41.612 35.87 Turkey IKI003 Homo sapiens 4500 10.1038/s41559-020-1106-9 bacteria Salmonella enterica tooth chromosome ENA raw PRJEB35216 ERS3967961 Key2020 2020 10.1038/s41559-020-1106-9 Oberbipp 47.262 7.659 Switzerland OBP001 Homo sapiens 4600 10.1038/s41559-020-1106-9 bacteria Salmonella enterica tooth chromosome ENA raw PRJEB35216 ERS3967965 Key2020 2020 10.1038/s41559-020-1106-9 Su Asedazzu 39.512 9.145 Italy SUA004 Homo sapiens 3800 10.1038/s41559-020-1106-9 bacteria Salmonella enterica tooth chromosome ENA raw PRJEB35216 ERS3967966 Key2020 2020 10.1038/s41559-020-1106-9 Marinskaya 3 43.905 43.521 Russia MK3001 Homo sapiens 2800 10.1038/s41559-020-1106-9 bacteria Salmonella enterica tooth chromosome ENA raw PRJEB35216 ERS3967962 Key2020 2020 10.1038/s41559-020-1106-9 Chiusi 43.016 11.95 Italy ETR001 Homo sapiens 1800 10.1038/s41559-020-1106-9 bacteria Salmonella enterica tooth chromosome ENA raw PRJEB35216 ERS3967960 Barquera2020 2020 10.1016/j.cub.2020.04.002 Hospital Real de San José de los Naturales 19.43 -99.14 Mexico SJN003 Homo sapiens 500 10.1016/j.cub.2020.04.002 bacteria Treponema pallidum tooth chromosome ENA raw PRJEB37490 ERS4529000,ERS4529001 Barquera2020 2020 10.1016/j.cub.2020.04.002 Hospital Real de San José de los Naturales 19.43 -99.14 Mexico SJN001 Homo sapiens 500 10.1016/j.cub.2020.04.002 virus Hepatitis B virus tooth chromosome ENA raw PRJEB37490 ERS4528997,ERS4528998 KrauseKyora2018 2018 10.7554/eLife.36666 Karsdorf 51.27 11.65 Germany Karsdorf Homo sapiens 7000 10.7554/eLife.36666 virus Hepatitis B virus tooth chromosome ENA raw PRJEB24921 ERS2200179 KrauseKyora2018 2018 10.7554/eLife.36666 Sorsum 52.27 9.61 Germany Sorsum Homo sapiens 5100 10.7554/eLife.36666 virus Hepatitis B virus tooth chromosome ENA raw PRJEB24921 ERS2200180 KrauseKyora2018 2018 10.7554/eLife.36666 Petersberg 47.71 12.12 Germany Petersberg Homo sapiens 900 10.7554/eLife.36666 virus Hepatitis B virus tooth chromosome ENA raw PRJEB24921 ERS2200178 Giffin2020 2020 10.1038/s41598-020-66012-x Aguonu g. 10 54.675 25.277 Lithuania AGU007 Homo sapiens 400 10.1038/s41598-020-66012-x bacteria Yersinia pestis tooth chromosome ENA raw PRJEB37508 ERS4398261 Giffin2020 2020 10.1038/s41598-020-66012-x Aguonu g. 10 54.675 25.277 Lithuania AGU010 Homo sapiens 400 10.1038/s41598-020-66012-x bacteria Yersinia pestis tooth chromosome ENA raw PRJEB37508 ERS4410876 Giffin2020 2020 10.1038/s41598-020-66012-x Aguonu g. 10 54.675 25.277 Lithuania AGU020 Homo sapiens 400 10.1038/s41598-020-66012-x bacteria Yersinia pestis tooth chromosome ENA raw PRJEB37508 ERS4398262 Giffin2020 2020 10.1038/s41598-020-66012-x Aguonu g. 10 54.675 25.277 Lithuania AGU025 Homo sapiens 400 10.1038/s41598-020-66012-x bacteria Yersinia pestis tooth chromosome ENA raw PRJEB37508 ERS4398263 Giffin2020 2020 10.1038/s41598-020-66012-x Aguonu g. 10 54.675 25.277 Lithuania AGU007 Homo sapiens 400 10.1038/s41598-020-66012-x bacteria Treponema pallidum tooth chromosome ENA raw PRJEB37508 ERS4398260 Feldman2016 2016 10.1093/molbev/msw170 Altenerding 48.287 11.903 Germany AE1175 Homo sapiens 1500 10.1093/molbev/msw170 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB14851 ERS1266114 BarGal2012 2012 10.1002/hep.25852 Yangju 37.8 127.0 South Korea Yangju child mummy Homo sapiens 300 10.1002/hep.25852 virus Hepatitis B virus liver chromosome GenBank consensus Unknown JN315779 Keller2019 2019 10.1073/pnas.1820447116 Dittenheim 49.055 10.792 Germany DIT003.B Homo sapiens 1500 10.1073/pnas.1820447116 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB29991 ERS3465379 Keller2019 2019 10.1073/pnas.1820447116 Dittenheim 49.055 10.792 Germany DIT004 merged Homo sapiens 1500 10.1073/pnas.1820447116 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB29991 ERS3465380,ERS3465381 Keller2019 2019 10.1073/pnas.1820447116 Edix Hill, Cambridgeshire 52.136 -0.011 United Kingdom EDI001.A Homo sapiens 1500 10.1073/pnas.1820447116 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB29991 ERS3465382 Keller2019 2019 10.1073/pnas.1820447116 Edix Hill, Cambridgeshire 52.136 -0.011 United Kingdom EDI003.A Homo sapiens 1500 10.1073/pnas.1820447116 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB29991 ERS3465383 Keller2019 2019 10.1073/pnas.1820447116 Edix Hill, Cambridgeshire 52.136 -0.011 United Kingdom EDI004.A Homo sapiens 1500 10.1073/pnas.1820447116 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB29991 ERS3465384 Keller2019 2019 10.1073/pnas.1820447116 Edix Hill, Cambridgeshire 52.136 -0.011 United Kingdom EDI005.A Homo sapiens 1500 10.1073/pnas.1820447116 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB29991 ERS3465385 Keller2019 2019 10.1073/pnas.1820447116 Saint-Doulchard Le Pressoir 47.105 2.357 France LSD001.A Homo sapiens 1300 10.1073/pnas.1820447116 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB29991 ERS3465386 Keller2019 2019 10.1073/pnas.1820447116 Saint-Doulchard Le Pressoir 47.105 2.357 France LSD002.A Homo sapiens 1300 10.1073/pnas.1820447116 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB29991 ERS3465387 Keller2019 2019 10.1073/pnas.1820447116 Saint-Doulchard Le Pressoir 47.105 2.357 France LSD007.A Homo sapiens 1300 10.1073/pnas.1820447116 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB29991 ERS3465388 Keller2019 2019 10.1073/pnas.1820447116 Saint-Doulchard Le Pressoir 47.105 2.357 France LSD013.A Homo sapiens 1300 10.1073/pnas.1820447116 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB29991 ERS3465389 Keller2019 2019 10.1073/pnas.1820447116 Saint-Doulchard Le Pressoir 47.105 2.357 France LSD019.A Homo sapiens 1300 10.1073/pnas.1820447116 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB29991 ERS3465390 Keller2019 2019 10.1073/pnas.1820447116 Saint-Doulchard Le Pressoir 47.105 2.357 France LSD020.A Homo sapiens 1300 10.1073/pnas.1820447116 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB29991 ERS3465391 Keller2019 2019 10.1073/pnas.1820447116 Saint-Doulchard Le Pressoir 47.105 2.357 France LSD021.A Homo sapiens 1300 10.1073/pnas.1820447116 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB29991 ERS3465392 Keller2019 2019 10.1073/pnas.1820447116 Saint-Doulchard Le Pressoir 47.105 2.357 France LSD022.A Homo sapiens 1300 10.1073/pnas.1820447116 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB29991 ERS3465393 Keller2019 2019 10.1073/pnas.1820447116 Saint-Doulchard Le Pressoir 47.105 2.357 France LSD023.A Homo sapiens 1300 10.1073/pnas.1820447116 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB29991 ERS3465394 Keller2019 2019 10.1073/pnas.1820447116 Saint-Doulchard Le Pressoir 47.105 2.357 France LSD024.A Homo sapiens 1300 10.1073/pnas.1820447116 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB29991 ERS3465395 Keller2019 2019 10.1073/pnas.1820447116 Saint-Doulchard Le Pressoir 47.105 2.357 France LSD026.A Homo sapiens 1300 10.1073/pnas.1820447116 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB29991 ERS3465396 Keller2019 2019 10.1073/pnas.1820447116 Lunel-Viel (Quartier centrale) 43.677 4.092 France LVC001 merged Homo sapiens 1500 10.1073/pnas.1820447116 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB29991 ERS3465397,ERS3465398 Keller2019 2019 10.1073/pnas.1820447116 Lunel-Viel (Quartier centrale) 43.677 4.092 France LVC005 merged Homo sapiens 1500 10.1073/pnas.1820447116 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB29991 ERS3465399,ERS3465400,ERS3465401 Keller2019 2019 10.1073/pnas.1820447116 Lunel-Viel (Quartier centrale) 43.677 4.092 France LVC006.A Homo sapiens 1500 10.1073/pnas.1820447116 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB29991 ERS3465402 Keller2019 2019 10.1073/pnas.1820447116 Petting 47.912 12.816 Germany PET004.A Homo sapiens 1500 10.1073/pnas.1820447116 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB29991 ERS3465404 Keller2019 2019 10.1073/pnas.1820447116 Petting 47.912 12.816 Germany PET005.A Homo sapiens 1500 10.1073/pnas.1820447116 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB29991 ERS3465405 Keller2019 2019 10.1073/pnas.1820447116 Petting 47.912 12.816 Germany PET006.A Homo sapiens 1500 10.1073/pnas.1820447116 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB29991 ERS3465406 Keller2019 2019 10.1073/pnas.1820447116 Unterthürheim 48.599 10.706 Germany UNT002.A Homo sapiens 1600 10.1073/pnas.1820447116 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB29991 ERS3465407 Keller2019 2019 10.1073/pnas.1820447116 Unterthürheim 48.599 10.706 Germany UNT003.A Homo sapiens 1500 10.1073/pnas.1820447116 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB29991 ERS3465408 Keller2019 2019 10.1073/pnas.1820447116 Unterthürheim 48.599 10.706 Germany UNT004.A Homo sapiens 1600 10.1073/pnas.1820447116 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB29991 ERS3465409 Keller2019 2019 10.1073/pnas.1820447116 Unterthürheim 48.599 10.706 Germany UNT005.A Homo sapiens 1500 10.1073/pnas.1820447116 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB29991 ERS3465410 Keller2019 2019 10.1073/pnas.1820447116 Unterthürheim 48.599 10.706 Germany UNT006.A Homo sapiens 1500 10.1073/pnas.1820447116 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB29991 ERS3465411 Keller2019 2019 10.1073/pnas.1820447116 Valencia 39.476 -0.374 Spain VAL001.B Homo sapiens 1500 10.1073/pnas.1820447116 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB29991 ERS3465403 Keller2019 2019 10.1073/pnas.1820447116 Waging 47.934 12.733 Germany WAG001.A Homo sapiens 1500 10.1073/pnas.1820447116 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB29991 ERS3465412 Muhlemann2018b 2018 10.1073/pnas.1804921115 Tian Shan 41.501 75.794 Kyrgyzstan DA66 Homo sapiens 1500 10.1073/pnas.1804921115 virus Parvovirus B19 unknown chromosome GitHub reference_aligned,consensus acorg/parvo-2018 DA66 Muhlemann2018b 2018 10.1073/pnas.1804921115 Lake Baikal (Shamanka II) 51.698 103.703 Russia DA337 Homo sapiens 4000 10.1073/pnas.1804921115 virus Parvovirus B19 unknown chromosome GitHub reference_aligned,consensus acorg/parvo-2018 DA337 Muhlemann2018b 2018 10.1073/pnas.1804921115 Gotland 57.63 18.28 Sweden VK477 Homo sapiens 1000 10.1073/pnas.1804921115 virus Parvovirus B19 tooth chromosome GitHub reference_aligned,consensus acorg/parvo-2018 VK477 Muhlemann2018b 2018 10.1073/pnas.1804921115 Brandýsek 50.18 14.15 Czech Republic RISE569 Homo sapiens 1300 10.1073/pnas.1804921115 virus Parvovirus B19 tooth chromosome GitHub reference_aligned,consensus acorg/parvo-2018 RISE569 Muhlemann2018b 2018 10.1073/pnas.1804921115 Bazaiha, Krasnoyarsk 55.951 92.784 Russia NEO105 Homo sapiens 500 10.1073/pnas.1804921115 virus Parvovirus B19 tooth chromosome GitHub reference_aligned,consensus acorg/parvo-2018 NEO105 Muhlemann2018b 2018 10.1073/pnas.1804921115 Lake Baikal (Shamanka II) 51.698 103.703 Russia DA251 Homo sapiens 6900 10.1073/pnas.1804921115 virus Parvovirus B19 tooth chromosome GitHub reference_aligned,consensus acorg/parvo-2018 DA251 Muhlemann2018b 2018 10.1073/pnas.1804921115 Eastern Settlement 60.99 -45.42 Greenland VK6 Homo sapiens 1000 10.1073/pnas.1804921115 virus Parvovirus B19 tooth chromosome GitHub reference_aligned,consensus acorg/parvo-2018 VK6 Muhlemann2018b 2018 10.1073/pnas.1804921115 Bodzia 52.703 18.887 Poland VK154 Homo sapiens 1000 10.1073/pnas.1804921115 virus Parvovirus B19 tooth chromosome GitHub reference_aligned,consensus acorg/parvo-2018 VK154 Muhlemann2018b 2018 10.1073/pnas.1804921115 Oxford 51.756 -1.257 United Kingdom VK143 Homo sapiens 1100 10.1073/pnas.1804921115 virus Parvovirus B19 tooth chromosome GitHub reference_aligned,consensus acorg/parvo-2018 VK143 Muhlemann2018b 2018 10.1073/pnas.1804921115 Lake Baikal (Shamanka II) 51.698 103.703 Russia DA336 Homo sapiens 4100 10.1073/pnas.1804921115 virus Parvovirus B19 unknown chromosome GitHub reference_aligned,consensus acorg/parvo-2018 DA336 Wagner2014 2014 10.1016/S1473-3099(13)70323-2 Aschheim-Bajuwarenring 48.172 11.715 Germany A120 Homo sapiens 1400 10.1016/S1473-3099(13)70323-2 bacteria Yersinia pestis tooth chromosome SRA raw PRJNA231474 SRS514388,SRS514389,SRS514393,SRS514395,SRS514397,SRS514398,SRS514399,SRS514400,SRS514401,SRS514402,SRS514403,SRS514404,SRS514423,SRS514424,SRS514425,SRS514426,SRS514427,SRS514429,SRS514430,SRS514431,SRS514435,SRS514436,SRS514437,SRS514438,SRS514439,SRS514440,SRS514441,SRS514442,SRS514507,SRS514506,SRS514505,SRS514444 Wagner2014 2014 10.1016/S1473-3099(13)70323-2 Aschheim-Bajuwarenring 48.172 11.715 Germany A76 Homo sapiens 1400 10.1016/S1473-3099(13)70323-2 bacteria Yersinia pestis tooth chromosome SRA raw PRJNA231474 SRS514391,SRS514392,SRS514432,SRS514443,SRS514508 Bos2011 2011 10.1038/nature10549 East Smithfield Cemetery 51.508 -0.069 United Kingdom ES_11972 Homo sapiens 600 10.1038/nature10549 bacteria Yersinia pestis tooth chromosome SRA raw SRP008060 SRS259946 Bos2011 2011 10.1038/nature10549 Abbey St. Mary Graces 51.508 -0.069 United Kingdom ES_6330 Homo sapiens 600 10.1038/nature10549 bacteria Yersinia pestis tooth chromosome SRA raw SRP008060 SRS259944 Bos2011 2011 10.1038/nature10549 East Smithfield Cemetery 51.508 -0.069 United Kingdom ES_8124 Homo sapiens 600 10.1038/nature10549 bacteria Yersinia pestis tooth chromosome SRA raw SRP008060 SRS259947 Bos2011 2011 10.1038/nature10549 East Smithfield Cemetery 51.508 -0.069 United Kingdom ES_8291 Homo sapiens 600 10.1038/nature10549 bacteria Yersinia pestis tooth chromosome SRA raw SRP008060 SRS259945 Bos2016 2016 10.7554/eLife.12994.001 l'Observance 43.301 5.367 France OBS107 Homo sapiens 200 10.7554/eLife.12994.001 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB12163 ERS1020860 Bos2016 2016 10.7554/eLife.12994.001 l'Observance 43.301 5.367 France OBS110 Homo sapiens 200 10.7554/eLife.12994.001 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB12163 ERS1020861 Bos2016 2016 10.7554/eLife.12994.001 l'Observance 43.301 5.367 France OBS116 Homo sapiens 200 10.7554/eLife.12994.001 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB12163 ERS1020862 Bos2016 2016 10.7554/eLife.12994.001 l'Observance 43.301 5.367 France OBS124 Homo sapiens 200 10.7554/eLife.12994.001 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB12163 ERS1020863 Bos2016 2016 10.7554/eLife.12994.001 l'Observance 43.301 5.367 France OBS137 Homo sapiens 200 10.7554/eLife.12994.001 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB12163 ERS1020864 PattersonRoss2018 2018 10.1371/journal.ppat.1006750 Basilica of St. Domenico Maggiore, Naples 40.848 14.254 Italy NASD24 Homo sapiens 400 10.1371/journal.ppat.1006750 virus Hepatitis B virus tissue chromosome GenBank consensus Unknown MG585269 Vagene2018 2018 10.1038/s41559-017-0446-6 Teposcolula-Yucundaa 17.499 -97.467 Mexico Tepos_10 Homo sapiens 400 10.1038/s41559-017-0446-6 bacteria Salmonella enterica tooth chromosome ENA raw PRJEB23438 ERS2020211 Vagene2018 2018 10.1038/s41559-017-0446-6 Teposcolula-Yucundaa 17.499 -97.467 Mexico Tepos_11 Homo sapiens 400 10.1038/s41559-017-0446-6 bacteria Salmonella enterica tooth chromosome ENA raw PRJEB23438 ERS2020212 Vagene2018 2018 10.1038/s41559-017-0446-6 Teposcolula-Yucundaa 17.499 -97.467 Mexico Tepos_14 Homo sapiens 400 10.1038/s41559-017-0446-6 bacteria Salmonella enterica tooth chromosome ENA raw PRJEB23438 ERS2020215 Vagene2018 2018 10.1038/s41559-017-0446-6 Teposcolula-Yucundaa 17.499 -97.467 Mexico Tepos_20 Homo sapiens 400 10.1038/s41559-017-0446-6 bacteria Salmonella enterica tooth chromosome ENA raw PRJEB23438 ERS2020221 Vagene2018 2018 10.1038/s41559-017-0446-6 Teposcolula-Yucundaa 17.499 -97.467 Mexico Tepos_34 Homo sapiens 400 10.1038/s41559-017-0446-6 bacteria Salmonella enterica tooth chromosome ENA raw PRJEB23438 ERS2020226 Vagene2018 2018 10.1038/s41559-017-0446-6 Teposcolula-Yucundaa 17.499 -97.467 Mexico Tepos_35 Homo sapiens 400 10.1038/s41559-017-0446-6 bacteria Salmonella enterica tooth chromosome ENA raw PRJEB23438 ERS2020227 Vagene2018 2018 10.1038/s41559-017-0446-6 Teposcolula-Yucundaa 17.499 -97.467 Mexico Tepos_36 Homo sapiens 400 10.1038/s41559-017-0446-6 bacteria Salmonella enterica tooth chromosome ENA raw PRJEB23438 ERS2020228 Vagene2018 2018 10.1038/s41559-017-0446-6 Teposcolula-Yucundaa 17.499 -97.467 Mexico Tepos_37 Homo sapiens 400 10.1038/s41559-017-0446-6 bacteria Salmonella enterica tooth chromosome ENA raw PRJEB23438 ERS2020229 Vagene2018 2018 10.1038/s41559-017-0446-6 Teposcolula-Yucundaa 17.499 -97.467 Mexico Tepos_38 Homo sapiens 400 10.1038/s41559-017-0446-6 bacteria Salmonella enterica tooth chromosome ENA raw PRJEB23438 ERS2020230 Vagene2018 2018 10.1038/s41559-017-0446-6 Teposcolula-Yucundaa 17.499 -97.467 Mexico Tepos_41 Homo sapiens 400 10.1038/s41559-017-0446-6 bacteria Salmonella enterica tooth chromosome ENA raw PRJEB23438 ERS2020231 DeDios2020 2020 10.1016/j.meegid.2020.104209 Musées Royaux des Beaux-Arts de Belgique 50.842 4.358 Belgium Marat Homo sapiens 200 10.1016/j.meegid.2020.104209 eukaryota Malassezia restricta blood chromosome ENA raw PRJEB32319 ERS4278128,ERS4278129,ERS4278130 DeDios2020 2020 10.1016/j.meegid.2020.104209 Musées Royaux des Beaux-Arts de Belgique 50.842 4.358 Belgium Marat Homo sapiens 200 10.1016/j.meegid.2020.104209 bacteria Cutibacterium acnes blood chromosome ENA raw PRJEB32319 ERS4278128,ERS4278129,ERS4278130 Zhou2018 2018 10.1016/j.cub.2018.05.058 St. Olav's Cathedral 63.425 10.392 Norway SK152 Homo sapiens 800 10.1016/j.cub.2018.05.058 bacteria Salmonella enterica tooth chromosome UCPH ERDA raw E56xgi8CEl dentine_lib1,dentine_lib2,femur_lib1,new_lib1,new_lib2,pulp_lib1,whole_root_lib1,whole_root_lib2 Sabin2020 2020 10.1186/s13059-020-02112-1 Lund Cathedral 55.704 13.193 Sweden Bishop Peder Winstrup Homo sapiens 300 10.1186/s13059-020-02112-1 bacteria Mycobacterium tuberculosis calcified nodule chromosome SRA raw PRJNA517266 SRS6462469 Kay2014 2014 10.1128/mBio.01337-14 Geridu, Sardinia 40.78 8.574 Italy 2568 Homo sapiens 600 10.1128/mBio.01337-14 bacteria Brucella melitensis calcified nodule chromosome ENA raw PRJEB6045 ERS430636 Devault2014 2014 10.1056/NEJMoa1308663 Mütter Museum, College of Physicians of Philadelphia 39.953 -75.176 USA 3090.13 Homo sapiens 100 10.1056/NEJMoa1308663 bacteria Vibrio cholerae intestine chromosome SRA raw PRJNA219007 SRS480102 Kay2015 2015 10.1038/ncomms7717 Dominican church of Vác 47.777 19.127 Hungary body_121 Homo sapiens 200 10.1038/ncomms7717 bacteria Mycobacterium tuberculosis bone chromosome ENA raw PRJEB7454 ERS563413,ERS563414,ERS563415 Kay2015 2015 10.1038/ncomms7717 Dominican church of Vác 47.777 19.127 Hungary body_68 Homo sapiens 200 10.1038/ncomms7717 bacteria Mycobacterium tuberculosis lung tissue chromosome ENA raw PRJEB7454 ERS563404,ERS563405,ERS563406 Kay2015 2015 10.1038/ncomms7717 Dominican church of Vác 47.777 19.127 Hungary body_78 Homo sapiens 200 10.1038/ncomms7717 bacteria Mycobacterium tuberculosis bone chromosome ENA raw PRJEB7454 ERS563407 Kay2015 2015 10.1038/ncomms7717 Dominican church of Vác 47.777 19.127 Hungary body_28 Homo sapiens 200 10.1038/ncomms7717 bacteria Mycobacterium tuberculosis abdomen chromosome ENA raw PRJEB7454 ERS563385,ERS563386,ERS563387 Kay2015 2015 10.1038/ncomms7717 Dominican church of Vác 47.777 19.127 Hungary body_25 Homo sapiens 200 10.1038/ncomms7717 bacteria Mycobacterium tuberculosis abdomen chromosome ENA raw PRJEB7454 ERS563382,ERS563383 Kay2015 2015 10.1038/ncomms7717 Dominican church of Vác 47.777 19.127 Hungary body_80 Homo sapiens 100 10.1038/ncomms7717 bacteria Mycobacterium tuberculosis thoracic segment of trunk chromosome ENA raw PRJEB7454 ERS563408 Kay2015 2015 10.1038/ncomms7717 Dominican church of Vác 47.777 19.127 Hungary body_23 Homo sapiens 200 10.1038/ncomms7717 bacteria Mycobacterium tuberculosis abdomen chromosome ENA raw PRJEB7454 ERS563378,ERS563379 Kay2015 2015 10.1038/ncomms7717 Dominican church of Vác 47.777 19.127 Hungary body_92 Homo sapiens 200 10.1038/ncomms7717 bacteria Mycobacterium tuberculosis thoracic segment of trunk chromosome ENA raw PRJEB7454 ERS563409 vanDorp2020 2020 10.1093/molbev/msz264 Sant Jaume d’Enveja 40.705 0.727 Spain Ebro-1944 Homo sapiens 100 10.1093/molbev/msz264 eukaryota Plasmodium vivax blood chromosome ENA raw PRJEB30878 ERS3037135,ERS3037137,ERS3037139,ERS3037136,ERS3037140,ERS3037138,ERS3037141 Kerudin2019 2019 10.1016/j.jas.2019.105035 Hospital of St James and St Mary Magdalene 50.842 -0.759 United Kingdom C21 Homo sapiens 400 10.1016/j.jas.2019.105035 bacteria Mycobacterium leprae bone chromosome ENA raw PRJEB35037 ERS3908875 Kerudin2019 2019 10.1016/j.jas.2019.105035 Hospital of St James and St Mary Magdalene 50.842 -0.759 United Kingdom C48 Homo sapiens 400 10.1016/j.jas.2019.105035 bacteria Mycobacterium leprae bone chromosome ENA raw PRJEB35037 ERS3908876 Kerudin2019 2019 10.1016/j.jas.2019.105035 Raunds Furnells cemetary 52.349 -0.534 United Kingdom R5046 Homo sapiens 800 10.1016/j.jas.2019.105035 bacteria Mycobacterium leprae bone chromosome ENA raw PRJEB35037 ERS3908877 Worobey2016 2016 10.1038/nature19827 San Francisco Cohort 37.77 -122.42 USA SF20 Homo sapiens 100 10.1038/nature19827 virus Human immunodeficiency virus 1 blood chromosome GenBank consensus Unknown KJ704794 Worobey2016 2016 10.1038/nature19827 New York Cohort 40.69 -73.98 USA NYC7 Homo sapiens 100 10.1038/nature19827 virus Human immunodeficiency virus 1 blood chromosome GenBank consensus Unknown KJ704791 Worobey2016 2016 10.1038/nature19827 New York Cohort 40.69 -73.98 USA NYC16 Homo sapiens 100 10.1038/nature19827 virus Human immunodeficiency virus 1 blood chromosome GenBank consensus Unknown KJ704790 Worobey2016 2016 10.1038/nature19827 New York Cohort 40.69 -73.98 USA NYC12 Homo sapiens 100 10.1038/nature19827 virus Human immunodeficiency virus 1 blood chromosome GenBank consensus Unknown KJ704789 Worobey2016 2016 10.1038/nature19827 New York Cohort 40.69 -73.98 USA NYC4 Homo sapiens 100 10.1038/nature19827 virus Human immunodeficiency virus 1 blood chromosome GenBank consensus Unknown KJ704792 Worobey2016 2016 10.1038/nature19827 New York Cohort 40.69 -73.98 USA Patient0 (PZconservative040513) Homo sapiens 100 10.1038/nature19827 virus Human immunodeficiency virus 1 blood chromosome GenBank consensus Unknown KJ704787,KJ704788,KJ704797 DeDios2019 2019 10.1099/mgen.0.000289 Sant Jaume d’Enveja 40.705 0.727 Spain Ebro-1944 Homo sapiens 100 10.1099/mgen.0.000289 eukaryota Plasmodium falciparum blood chromosome ENA raw PRJEB32165 ERS3369379,ERS3369380,ERS3369382,ERS3369383 Schuenemann2011 2011 10.1073/pnas.1105107108 East Smithfield Cemetery 51.508 -0.069 United Kingdom ES 1-5 Homo sapiens 600 10.1073/pnas.1105107108 bacteria Yersinia pestis tooth organelle GenBank consensus Unknown HE576987 Duggan2020 2020 10.1186/s13059-020-02079-z Mütter Museum, College of Physicians of Philadelphia 39.953 -75.176 USA VK01 Homo sapiens 100 10.1186/s13059-020-02079-z virus Vaccinia virus bodily fluid material chromosome SRA raw,consensus PRJNA561155 SRS5298897 Duggan2020 2020 10.1186/s13059-020-02079-z Mütter Museum, College of Physicians of Philadelphia 39.953 -75.176 USA VK02 Homo sapiens 100 10.1186/s13059-020-02079-z virus Vaccinia virus bodily fluid material chromosome SRA raw PRJNA561155 SRS5298896 Duggan2020 2020 10.1186/s13059-020-02079-z Mütter Museum, College of Physicians of Philadelphia 39.953 -75.176 USA VK05 Homo sapiens 100 10.1186/s13059-020-02079-z virus Vaccinia virus bodily fluid material chromosome SRA raw PRJNA561155 SRS5298895 Duggan2020 2020 10.1186/s13059-020-02079-z Mütter Museum, College of Physicians of Philadelphia 39.953 -75.176 USA VK08 Homo sapiens 100 10.1186/s13059-020-02079-z virus Vaccinia virus bodily fluid material chromosome SRA raw PRJNA561155 SRS5298894 Duggan2020 2020 10.1186/s13059-020-02079-z Mütter Museum, College of Physicians of Philadelphia 39.953 -75.176 USA VK12 Homo sapiens 100 10.1186/s13059-020-02079-z virus Vaccinia virus medical instrument chromosome SRA raw PRJNA561155 SRS5298893 Namouchi2018 2018 10.1073/pnas.1812865115 Abbadia San Salvatore 42.88 11.676 Italy BSS31 Homo sapiens 600 10.1073/pnas.1812865115 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB24499 ERS2865269 Namouchi2018 2018 10.1073/pnas.1812865115 Saint-Laurent-de-la-Cabrerisse 43.087 2.72 France SLC1006 Homo sapiens 600 10.1073/pnas.1812865115 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB24499 ERS2865271 Namouchi2018 2018 10.1073/pnas.1812865115 St Nicolay and St Clement 59.904 10.765 Norway OSL1 Homo sapiens 600 10.1073/pnas.1812865115 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB24499 ERS2865270 Namouchi2018 2018 10.1073/pnas.1812865115 Bergen op Zoom 51.494 4.287 Netherlands Ber45 Homo sapiens 600 10.1073/pnas.1812865115 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB24499 ERS2865268 Namouchi2018 2018 10.1073/pnas.1812865115 Bergen op Zoom 51.494 4.287 Netherlands Ber37 Homo sapiens 600 10.1073/pnas.1812865115 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB24499 ERS2865267 Spyrou2016 2016 10.1016/j.chom.2016.05.012 Sants Màrtirs Just i Pastor 41.382 2.178 Spain Barcelona_3031 Homo sapiens 600 10.1016/j.chom.2016.05.012 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB13664 ERS1124787 Spyrou2016 2016 10.1016/j.chom.2016.05.012 Ust-Jerusalem necropolis 54.967 49.034 Russia Bolgar_2370 Homo sapiens 600 10.1016/j.chom.2016.05.012 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB13664 ERS1124788 Spyrou2016 2016 10.1016/j.chom.2016.05.012 “Marktplatz” Ellwangen 48.962 10.131 Germany Ellwangen 549_O Homo sapiens 400 10.1016/j.chom.2016.05.012 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB13664 ERS1124790,ERS1124789 Martin2013 2013 10.1038/ncomms3172 Audernade 50.86 3.63 Belgium Pi1845A Solanum tuberosum 100 10.1038/ncomms3172 eukaryota Phytophthora infestans leaf chromosome ENA raw PRJEB4015 ERS258003 Martin2013 2013 10.1038/ncomms3172 Unknown 51.52 -0.13 United Kingdom Pi1845B Solanum tuberosum 100 10.1038/ncomms3172 eukaryota Phytophthora infestans leaf chromosome ENA raw PRJEB4015 ERS258004 Martin2013 2013 10.1038/ncomms3172 Skårop 55.09 10.69 Denmark Pi1876 Solanum tuberosum 100 10.1038/ncomms3172 eukaryota Phytophthora infestans leaf chromosome ENA raw PRJEB4015 ERS258005 Martin2013 2013 10.1038/ncomms3172 Stockholm 59.33 18.07 Sweden Pi1882 Solanum tuberosum 100 10.1038/ncomms3172 eukaryota Phytophthora infestans leaf chromosome ENA raw PRJEB4015 ERS258006 Martin2013 2013 10.1038/ncomms3172 Unknown 50.11 8.65 Germany Pi1889 Solanum tuberosum 100 10.1038/ncomms3172 eukaryota Phytophthora infestans leaf chromosome ENA raw PRJEB4015 ERS258007 Spyrou2019 2019 10.1038/s41467-019-12154-0 “Marktplatz” Ellwangen 48.962 10.131 Germany Ellwangen 549_O Homo sapiens 400 10.1038/s41467-019-12154-0 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB29990 ERS3607398 Spyrou2019 2019 10.1038/s41467-019-12154-0 New Churchyard (Bedlam) burial ground 51.517 -0.083 United Kingdom BED030.A0102 Homo sapiens 400 10.1038/s41467-019-12154-0 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB29990 ERS3607393 Spyrou2019 2019 10.1038/s41467-019-12154-0 New Churchyard (Bedlam) burial ground 51.517 -0.083 United Kingdom BED028.A0102 Homo sapiens 400 10.1038/s41467-019-12154-0 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB29990 ERS3607392 Spyrou2019 2019 10.1038/s41467-019-12154-0 New Churchyard (Bedlam) burial ground 51.517 -0.083 United Kingdom BED034.A0102 Homo sapiens 400 10.1038/s41467-019-12154-0 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB29990 ERS3607394 Spyrou2019 2019 10.1038/s41467-019-12154-0 New Churchyard (Bedlam) burial ground 51.517 -0.083 United Kingdom BED024.A0102 Homo sapiens 400 10.1038/s41467-019-12154-0 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB29990 ERS3607391 Spyrou2019 2019 10.1038/s41467-019-12154-0 New Churchyard (Bedlam) burial ground 51.517 -0.083 United Kingdom BED038.A0102 Homo sapiens 400 10.1038/s41467-019-12154-0 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB29990 ERS3607395 Spyrou2019 2019 10.1038/s41467-019-12154-0 Domlinden 12 52.414 12.567 Germany BRA001.A0101 Homo sapiens 300 10.1038/s41467-019-12154-0 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB29990 ERS3607396 Spyrou2019 2019 10.1038/s41467-019-12154-0 Domlinden 12 52.414 12.567 Germany BRA003.A0101 Homo sapiens 300 10.1038/s41467-019-12154-0 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB29990 ERS3607397 Spyrou2019 2019 10.1038/s41467-019-12154-0 Laishevo III cemetery 55.401 49.549 Russia LAI009.A0101 Homo sapiens 600 10.1038/s41467-019-12154-0 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB29990 ERS3607399 Spyrou2019 2019 10.1038/s41467-019-12154-0 Laishevo III cemetery 55.401 49.549 Russia LAI010.A0101 Homo sapiens 600 10.1038/s41467-019-12154-0 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB29990 ERS3607400 Spyrou2019 2019 10.1038/s41467-019-12154-0 Kirchhof St. Johannis 48.05 10.868 Germany LBG002.A0101 Homo sapiens 400 10.1038/s41467-019-12154-0 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB29990 ERS3607401 Spyrou2019 2019 10.1038/s41467-019-12154-0 St. Leonhardi 48.717 11.495 Germany MAN008.B0101 Homo sapiens 600 10.1038/s41467-019-12154-0 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB29990 ERS3607402 Spyrou2019 2019 10.1038/s41467-019-12154-0 St. Leonhardi 48.717 11.495 Germany MAN015.A0101 Homo sapiens 600 10.1038/s41467-019-12154-0 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB29990 ERS3607403 Spyrou2019 2019 10.1038/s41467-019-12154-0 Sankt Johans Freidhof 49.451 12.177 Germany NAB005.A/B0101 Homo sapiens 600 10.1038/s41467-019-12154-0 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB29990 ERS3607406 Spyrou2019 2019 10.1038/s41467-019-12154-0 Sankt Johans Freidhof 49.451 12.177 Germany NAB003.B0101 Homo sapiens 600 10.1038/s41467-019-12154-0 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB29990 ERS3607404 Spyrou2019 2019 10.1038/s41467-019-12154-0 Sankt Johans Freidhof 49.451 12.177 Germany NAB004.A0101 Homo sapiens 600 10.1038/s41467-019-12154-0 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB29990 ERS3607405 Spyrou2019 2019 10.1038/s41467-019-12154-0 Augustinian Friary 52.202 0.12 United Kingdom NMS002.A0101 Homo sapiens 400 10.1038/s41467-019-12154-0 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB29990 ERS3607408 Spyrou2019 2019 10.1038/s41467-019-12154-0 Augustinian Friary 52.202 0.12 United Kingdom NMS003.A0101 Homo sapiens 600 10.1038/s41467-019-12154-0 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB29990 ERS3607409 Spyrou2019 2019 10.1038/s41467-019-12154-0 Possenhofener Str. 3 47.995 11.339 Germany STA001.A0101 Homo sapiens 400 10.1038/s41467-019-12154-0 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB29990 ERS3607410 Spyrou2019 2019 10.1038/s41467-019-12154-0 Nägeligasse, St. Peter and Paul churchyard 46.956 8.365 Switzerland STN014.A0101 Homo sapiens 400 10.1038/s41467-019-12154-0 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB29990 ERS3607419 Spyrou2019 2019 10.1038/s41467-019-12154-0 Nägeligasse, St. Peter and Paul churchyard 46.956 8.365 Switzerland STN020.A0101 Homo sapiens 400 10.1038/s41467-019-12154-0 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB29990 ERS3607422 Spyrou2019 2019 10.1038/s41467-019-12154-0 Nägeligasse, St. Peter and Paul churchyard 46.956 8.365 Switzerland STN021.A0101 Homo sapiens 400 10.1038/s41467-019-12154-0 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB29990 ERS3607423 Spyrou2019 2019 10.1038/s41467-019-12154-0 Nägeligasse, St. Peter and Paul churchyard 46.956 8.365 Switzerland STN019.A0101 Homo sapiens 400 10.1038/s41467-019-12154-0 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB29990 ERS3607421 Spyrou2019 2019 10.1038/s41467-019-12154-0 Nägeligasse, St. Peter and Paul churchyard 46.956 8.365 Switzerland STN007.A0101 Homo sapiens 400 10.1038/s41467-019-12154-0 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB29990 ERS3607414 Spyrou2019 2019 10.1038/s41467-019-12154-0 Nägeligasse, St. Peter and Paul churchyard 46.956 8.365 Switzerland STN002.A0101 Homo sapiens 400 10.1038/s41467-019-12154-0 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB29990 ERS3607411 Spyrou2019 2019 10.1038/s41467-019-12154-0 Nägeligasse, St. Peter and Paul churchyard 46.956 8.365 Switzerland STN008.A0101 Homo sapiens 400 10.1038/s41467-019-12154-0 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB29990 ERS3607415 Spyrou2019 2019 10.1038/s41467-019-12154-0 Nägeligasse, St. Peter and Paul churchyard 46.956 8.365 Switzerland STN013.A0101 Homo sapiens 400 10.1038/s41467-019-12154-0 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB29990 ERS3607418 Spyrou2019 2019 10.1038/s41467-019-12154-0 Nägeligasse, St. Peter and Paul churchyard 46.956 8.365 Switzerland STN011.A0101 Homo sapiens 400 10.1038/s41467-019-12154-0 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB29990 ERS3607416 Spyrou2019 2019 10.1038/s41467-019-12154-0 Nägeligasse, St. Peter and Paul churchyard 46.956 8.365 Switzerland STN004.A0101 Homo sapiens 400 10.1038/s41467-019-12154-0 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB29990 ERS3607412 Spyrou2019 2019 10.1038/s41467-019-12154-0 Nägeligasse, St. Peter and Paul churchyard 46.956 8.365 Switzerland STN032.A0101 Homo sapiens 400 10.1038/s41467-019-12154-0 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB29990 ERS3607425 Spyrou2019 2019 10.1038/s41467-019-12154-0 Nägeligasse, St. Peter and Paul churchyard 46.956 8.365 Switzerland STN031.A0101 Homo sapiens 400 10.1038/s41467-019-12154-0 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB29990 ERS3607424 Spyrou2019 2019 10.1038/s41467-019-12154-0 Nägeligasse, St. Peter and Paul churchyard 46.956 8.365 Switzerland STN005.A0101 Homo sapiens 400 10.1038/s41467-019-12154-0 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB29990 ERS3607413 Spyrou2019 2019 10.1038/s41467-019-12154-0 Nägeligasse, St. Peter and Paul churchyard 46.956 8.365 Switzerland STN018.A0101 Homo sapiens 400 10.1038/s41467-019-12154-0 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB29990 ERS3607420 Spyrou2019 2019 10.1038/s41467-019-12154-0 Nägeligasse, St. Peter and Paul churchyard 46.956 8.365 Switzerland STN012.A0101 Homo sapiens 400 10.1038/s41467-019-12154-0 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB29990 ERS3607417 Spyrou2019 2019 10.1038/s41467-019-12154-0 16 rue des Trente Six Ponts 43.592 1.446 France TRP002.A0101/02 Homo sapiens 600 10.1038/s41467-019-12154-0 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB29990 ERS3607426 KrauseKyora2018b 2018 10.1038/s41467-018-03857-x St. Jørgen cemetery, Odense 55.399 10.406 Denmark G34 Homo sapiens 500 10.1038/s41467-018-03857-x bacteria Mycobacterium leprae tooth chromosome ENA raw PRJEB19769 ERS1574242 KrauseKyora2018b 2018 10.1038/s41467-018-03857-x St. Jørgen cemetery, Odense 55.399 10.406 Denmark G154 Homo sapiens 500 10.1038/s41467-018-03857-x bacteria Mycobacterium leprae tooth chromosome ENA raw PRJEB19769 ERS1574227 KrauseKyora2018b 2018 10.1038/s41467-018-03857-x St. Jørgen cemetery, Odense 55.399 10.406 Denmark G404 / Jorgen_404 Homo sapiens 700 10.1371/journal.ppat.1006997 bacteria Mycobacterium leprae tooth chromosome ENA raw PRJEB19769 ERS1574247 KrauseKyora2018b 2018 10.1038/s41467-018-03857-x St. Jørgen cemetery, Odense 55.399 10.406 Denmark G427 / Jorgen_427 Homo sapiens 700 10.1371/journal.ppat.1006997 bacteria Mycobacterium leprae tooth chromosome ENA raw PRJEB19769 ERS1574249 KrauseKyora2018b 2018 10.1038/s41467-018-03857-x St. Jørgen cemetery, Odense 55.399 10.406 Denmark G507 / Jorgen_507 Homo sapiens 800 10.1371/journal.ppat.1006997 bacteria Mycobacterium leprae tooth chromosome ENA raw PRJEB19769 ERS1574253 KrauseKyora2018b 2018 10.1038/s41467-018-03857-x St. Jørgen cemetery, Odense 55.399 10.406 Denmark G533 / Jorgen_533 Homo sapiens 800 10.1371/journal.ppat.1006997 bacteria Mycobacterium leprae tooth chromosome ENA raw PRJEB19769 ERS1574254 KrauseKyora2018b 2018 10.1038/s41467-018-03857-x St. Jørgen cemetery, Odense 55.399 10.406 Denmark G722 / Jorgen_722 Homo sapiens 600 10.1371/journal.ppat.1006997 bacteria Mycobacterium leprae tooth chromosome ENA raw PRJEB19769 ERS1574259 KrauseKyora2018b 2018 10.1038/s41467-018-03857-x St. Jørgen cemetery, Odense 55.399 10.406 Denmark G749 / Jorgen_749 Homo sapiens 700 10.1371/journal.ppat.1006997 bacteria Mycobacterium leprae tooth chromosome ENA raw PRJEB19769 ERS1574262 KrauseKyora2018b 2018 10.1038/s41467-018-03857-x St. Jørgen cemetery, Odense 55.399 10.406 Denmark G1083 Homo sapiens 500 10.1038/s41467-018-03857-x bacteria Mycobacterium leprae tooth chromosome ENA raw PRJEB19769 ERS1574217 KrauseKyora2018b 2018 10.1038/s41467-018-03857-x St. Jørgen cemetery, Odense 55.399 10.406 Denmark G1149 Homo sapiens 500 10.1038/s41467-018-03857-x bacteria Mycobacterium leprae tooth chromosome ENA raw PRJEB19769 ERS1574219 Majander2020 2020 10.1016/j.cub.2020.07.058 Holy Ghost Chapel, Turku 60.45 22.27 Finland CHS119 Homo sapiens 400 10.1016/j.cub.2020.07.058 bacteria Treponema pallidum tooth chromosome ENA raw PRJEB35855 ERS4982024,ERS4982025,ERS4982023,ERS4982027,ERS4982028,ERS4982026,ERS4982029,ERS4982032,ERS4982033,ERS4982034,ERS4982035,ERS4982036,ERS4982037,ERS4982038,ERS4982039,ERS4982040,ERS4982041,ERS4982042,ERS4982043,ERS4982044,ERS4982045,ERS4982046,ERS4982047,ERS4982048,ERS4982049,ERS4982050,ERS4982052,ERS4982051,ERS4982030,ERS4982031 Majander2020 2020 10.1016/j.cub.2020.07.058 Porvoo Dome cemetery, Porvoo 60.397 25.658 Finland PD28 Homo sapiens 200 10.1016/j.cub.2020.07.058 bacteria Treponema pallidum bone chromosome ENA raw PRJEB35855 ERS4982084,ERS4982081,ERS4982082,ERS4982083 Majander2020 2020 10.1016/j.cub.2020.07.058 St. Jacob’s cemetery, Tartu 58.38 26.71 Estonia SJ219 Homo sapiens 400 10.1016/j.cub.2020.07.058 bacteria Treponema pallidum bone chromosome ENA raw PRJEB35855 ERS4982086,ERS4982087,ERS4982085,ERS4982089,ERS4982090,ERS4982088,ERS4982091,ERS4982092,ERS4982093,ERS4982094,ERS4982095,ERS4982096,ERS4982097,ERS4982098,ERS4982099,ERS4982100,ERS4982101,ERS4982102,ERS4982103,ERS4982104,ERS4982105,ERS4982106,ERS4982107,ERS4982108,ERS4982109,ERS4982110,ERS4982113,ERS4982112,ERS4982111 Majander2020 2020 10.1016/j.cub.2020.07.058 Gertrude’s Infirmary, Kampen 52.55 5.91 Netherlands KM14-7 Homo sapiens 400 10.1016/j.cub.2020.07.058 bacteria Treponema pallidum bone chromosome ENA raw PRJEB35855 ERS4982054,ERS4982053,ERS4982055,ERS4982056,ERS4982057,ERS4982058,ERS4982059,ERS4982060,ERS4982061,ERS4982062,ERS4982063,ERS4982064,ERS4982065,ERS4982066,ERS4982067,ERS4982068,ERS4982069,ERS4982070,ERS4982071,ERS4982072,ERS4982073,ERS4982074,ERS4982075,ERS4982076,ERS4982077,ERS4982078,ERS4982079,ERS4982080 Yoshida2013 2013 10.7554/eLife.00731.002 England (in Kew Royal Botanical Gardens herbarium) 53.0 -1.0 United Kingdom KM177500 Solanum tuberosum 100 10.7554/eLife.00731.002 eukaryota Phytophthora infestans leaf chromosome ENA raw PRJEB1877 ERS241528 Yoshida2013 2013 10.7554/eLife.00731.002 Ireland (in Kew Royal Botanical Gardens herbarium) 53.0 -8.0 Ireland KM177513 Solanum tuberosum 100 10.7554/eLife.00731.002 eukaryota Phytophthora infestans leaf chromosome ENA raw PRJEB1877 ERS241529 Yoshida2013 2013 10.7554/eLife.00731.002 England (in Kew Royal Botanical Gardens herbarium) 53.0 -1.0 United Kingdom KM177497 Solanum tuberosum 100 10.7554/eLife.00731.002 eukaryota Phytophthora infestans leaf chromosome ENA raw PRJEB1877 ERS788351 Yoshida2013 2013 10.7554/eLife.00731.002 Ireland (in Kew Royal Botanical Gardens herbarium) 53.0 -8.0 Ireland KM177514 Solanum tuberosum 100 10.7554/eLife.00731.002 eukaryota Phytophthora infestans leaf chromosome ENA raw PRJEB1877 ERS241530 Yoshida2013 2013 10.7554/eLife.00731.002 England (in Kew Royal Botanical Gardens herbarium) 53.0 -1.0 United Kingdom KM177548 Solanum tuberosum 100 10.7554/eLife.00731.002 eukaryota Phytophthora infestans leaf chromosome ENA raw PRJEB1877 ERS241531 Yoshida2013 2013 10.7554/eLife.00731.002 Germany (in Botanische Staatssammlung München herbarium) 51.0 10.0 Germany M-0182898 Solanum tuberosum 100 10.7554/eLife.00731.002 eukaryota Phytophthora infestans leaf chromosome ENA raw PRJEB1877 ERS241532 Yoshida2013 2013 10.7554/eLife.00731.002 England (in Kew Royal Botanical Gardens herbarium) 53.0 -1.0 United Kingdom KM177509 Solanum tuberosum 100 10.7554/eLife.00731.002 eukaryota Phytophthora infestans leaf chromosome ENA raw PRJEB1877 ERS241533 Yoshida2013 2013 10.7554/eLife.00731.002 Germany (in Botanische Staatssammlung München herbarium) 51.0 10.0 Germany M-0182900 Solanum lycopersicum 100 10.7554/eLife.00731.002 eukaryota Phytophthora infestans leaf chromosome ENA raw PRJEB1877 ERS241534 Yoshida2013 2013 10.7554/eLife.00731.002 Germany (in Kew Royal Botanical Gardens herbarium) 51.0 10.0 Germany M-0182907 Solanum tuberosum 100 10.7554/eLife.00731.002 eukaryota Phytophthora infestans leaf chromosome ENA raw PRJEB1877 ERS241535 Yoshida2013 2013 10.7554/eLife.00731.002 Wales (in Kew Royal Botanical Gardens herbarium) 52.3 -3.5 United Kingdom KM177517 Solanum tuberosum 100 10.7554/eLife.00731.002 eukaryota Phytophthora infestans leaf chromosome ENA raw PRJEB1877 ERS241536 Yoshida2013 2013 10.7554/eLife.00731.002 USA (in Botanische Staatssammlung München herbarium) 40.0 -101.0 USA M-0182897 Solanum lycopersicum 100 10.7554/eLife.00731.002 eukaryota Phytophthora infestans leaf chromosome ENA raw PRJEB1877 ERS241537 Yoshida2013 2013 10.7554/eLife.00731.002 Germany (in Botanische Staatssammlung München herbarium) 51.0 10.0 Germany M-0182906 Solanum tuberosum 100 10.7554/eLife.00731.002 eukaryota Phytophthora infestans leaf chromosome ENA raw PRJEB1877 ERS241538 Yoshida2013 2013 10.7554/eLife.00731.002 Germany (in Botanische Staatssammlung München herbarium) 51.0 10.0 Germany M-0182896 Solanum tuberosum 100 10.7554/eLife.00731.002 eukaryota Phytophthora infestans leaf chromosome ENA raw PRJEB1877 ERS241539 Yoshida2013 2013 10.7554/eLife.00731.002 Austria (in Botanische Staatssammlung München herbarium) 47.5 14.0 Austria M-0182904 Solanum tuberosum 100 10.7554/eLife.00731.002 eukaryota Phytophthora infestans leaf chromosome ENA raw PRJEB1877 ERS241540 Yoshida2013 2013 10.7554/eLife.00731.002 Canada (in Botanische Staatssammlung München herbarium) 58.0 -109.0 Canada M-0182903 Solanum tuberosum 100 10.7554/eLife.00731.002 eukaryota Phytophthora infestans leaf chromosome ENA raw PRJEB1877 ERS241541 Yoshida2013 2013 10.7554/eLife.00731.002 England (in Kew Royal Botanical Gardens herbarium) 53.0 -1.0 United Kingdom KM177512 Solanum tuberosum 100 10.7554/eLife.00731.003 eukaryota Phytophthora infestans leaf chromosome ENA raw PRJEB1877 ERS241542 Muhlemann2020 2020 10.1126/science.aaw8977 Nabberör, Böda 57.244 17.059 Sweden VK382 Homo sapiens 1300 10.1126/science.aaw8977 virus Variola virus tooth chromosome SRA reference_aligned PRJEB38129 ERS4540432 Muhlemann2020 2020 10.1126/science.aaw8977 Lødingen,, Nordland 68.411 15.988 Norway VK388 Homo sapiens 1300 10.1126/science.aaw8977 virus Variola virus tooth chromosome SRA reference_aligned PRJEB38129 ERS4540433 Muhlemann2020 2020 10.1126/science.aaw8977 Gnezdovo 54.784 31.865 Russia VK470 Homo sapiens 1000 10.1126/science.aaw8977 virus Variola virus tooth chromosome SRA reference_aligned PRJEB38129 ERS4540435 Muhlemann2020 2020 10.1126/science.aaw8977 Bårse ‘Tyvestensagern’ 55.125 11.951 Denmark VK281 Homo sapiens 1000 10.1126/science.aaw8977 virus Variola virus tooth chromosome SRA reference_aligned PRJEB38129 ERS4540431 Muhlemann2020 2020 10.1126/science.aaw8977 St. John’s College, Oxford 51.756 -1.259 United Kingdom VK168 Homo sapiens 1000 10.1126/science.aaw8977 virus Variola virus bone chromosome SRA reference_aligned PRJEB38129 ERS4540429 Muhlemann2020 2020 10.1126/science.aaw8977 Sörby-Störlinge 56.81 16.735 Sweden VK533 Homo sapiens 1000 10.1126/science.aaw8977 virus Variola virus tooth chromosome SRA reference_aligned PRJEB38129 ERS4540437 Muhlemann2020 2020 10.1126/science.aaw8977 Bodø 67.279 14.404 Norway VK515 Homo sapiens 1200 10.1126/science.aaw8977 virus Variola virus tooth chromosome SRA reference_aligned PRJEB38129 ERS4540436 Muhlemann2020 2020 10.1126/science.aaw8977 Gnezdovo 54.784 31.865 Russia VK255 Homo sapiens 1000 10.1126/science.aaw8977 virus Variola virus tooth chromosome SRA reference_aligned PRJEB38129 ERS4540430 Muhlemann2020 2020 10.1126/science.aaw8977 Varzino 68.37 38.38 Russia FIN1 Homo sapiens 100 10.1126/science.aaw8977 virus Variola virus tooth chromosome SRA reference_aligned PRJEB38129 ERS4540426 Muhlemann2020 2020 10.1126/science.aaw8977 Khalas-Pugor, Salekhard 66.546 66.605 Russia KHA1 Homo sapiens 100 10.1126/science.aaw8977 virus Variola virus bone chromosome SRA reference_aligned PRJEB38129 ERS4540425 Muhlemann2020 2020 10.1126/science.aaw8977 Forgalla skepp, Böda 57.244 17.059 Sweden VK443 Homo sapiens 1000 10.1126/science.aaw8977 virus Variola virus tooth chromosome SRA reference_aligned PRJEB38129 ERS4540434 Muhlemann2020 2020 10.1126/science.aaw8977 Ljungbacka, Lockarp 55.532 13.032 Sweden VK108 Homo sapiens 1000 10.1126/science.aaw8977 virus Variola virus tooth chromosome SRA reference_aligned PRJEB38129 ERS4540427 Muhlemann2020 2020 10.1126/science.aaw8977 Galgedil, Funen 55.524 10.386 Denmark VK138 Homo sapiens 1000 10.1126/science.aaw8977 virus Variola virus tooth chromosome SRA reference_aligned PRJEB38129 ERS4540428 Mendum2014 2014 10.1186/1471-2164-15-270 St. Mary Magdalene leprosarium, Winchester 51.059 -1.308 United Kingdom Sk14 Homo sapiens 1000 10.1186/1471-2164-15-270 bacteria Mycobacterium leprae bone chromosome ENA raw PRJNA200950 SRS418847 Neukamm2020 2020 10.1186/s12915-020-00839-8 Abusir el-Meleq 29.24 31.1 Egypt Abusir1630 Homo sapiens 2200 10.1038/ncomms15694 bacteria Mycobacterium leprae bone chromosome ENA raw PRJEB33848 ERS3635976,ERS3636087,ERS3636088,ERS3636089 Neukamm2020 2020 10.1186/s12915-020-00839-8 Abusir el-Meleq 29.24 31.1 Egypt Abusir1543 Homo sapiens 1900 10.1371/journal.pone.0060307 virus Hepatitis B virus tissue chromosome ENA raw PRJEB33848 ERS3636018,ERS3636097,ERS3636099,ERS3636100,ERS3636098,ERS3636101,ERS3636093,ERS3636094,ERS3636095,ERS3636096,ERS3636025 Eerkens2018 2018 10.1016/j.ijpp.2018.05.001 CA-SCL-919, Santa Clara County 37.3 -121.8 USA 16 Homo sapiens 400 10.1016/j.ijpp.2018.05.001 bacteria Neisseria meningitidis dental calculus chromosome SRA raw PRJNA377320 SRS2006287 Susat2020 2020 10.1038/s41598-020-71530-9 Mass grave 1, St. Gertrude's Cemetery, Riga 56.954 24.119 Latvia G488 Homo sapiens 400 10.1038/s41598-020-71530-9 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB36413 ERS4266556 Susat2020 2020 10.1038/s41598-020-71530-9 Burial pit, St. Gertrude's Cemetery, Riga 56.954 24.119 Latvia G701 Homo sapiens 400 10.1038/s41598-020-71530-9 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB36413 ERS4266549 Eisenhofer2020 2020 10.1098/rstb.2019.0578 Tokyo 35.71 139.78 Japan A18023_Japan_Edo_4 Homo sapiens 200 10.1098/rstb.2019.0578 bacteria Anaerolineaceae bacterium oral taxon 439 dental calculus chromosome SRA raw PRJNA608555 SRS6212663 Eisenhofer2020 2020 10.1098/rstb.2019.0578 Tokyo 35.71 139.78 Japan A18021_Japan_Edo_2 Homo sapiens 200 10.1098/rstb.2019.0578 bacteria Anaerolineaceae bacterium oral taxon 439 dental calculus chromosome SRA raw PRJNA608555 SRS6212661 Eisenhofer2020 2020 10.1098/rstb.2019.0578 Tokyo 35.71 139.78 Japan A18020_Japan_Edo_1 Homo sapiens 200 10.1098/rstb.2019.0578 bacteria Anaerolineaceae bacterium oral taxon 439 dental calculus chromosome SRA raw PRJNA608555 SRS6212660 Eisenhofer2020 2020 10.1098/rstb.2019.0578 Miyano 39.12 141.81 Japan A18018_Japan_Jomon_4 Homo sapiens 2700 10.1098/rstb.2019.0578 bacteria Anaerolineaceae bacterium oral taxon 439 dental calculus chromosome SRA raw PRJNA608555 SRS6212658 Eisenhofer2020 2020 10.1098/rstb.2019.0578 Ikawazu 34.64 137.14 Japan A18016_Japan_Jomon_2 Homo sapiens 2700 10.1098/rstb.2019.0578 bacteria Anaerolineaceae bacterium oral taxon 439 dental calculus chromosome SRA raw PRJNA608555 SRS6212656 Eisenhofer2020 2020 10.1098/rstb.2019.0578 Tokyo 35.71 139.78 Japan A18033_Japan_Edo_10 Homo sapiens 200 10.1098/rstb.2019.0578 bacteria Anaerolineaceae bacterium oral taxon 439 dental calculus chromosome SRA raw PRJNA608555 SRS6212655 Eisenhofer2020 2020 10.1098/rstb.2019.0578 Tokyo 35.71 139.78 Japan A18032_Japan_Edo_9 Homo sapiens 200 10.1098/rstb.2019.0578 bacteria Anaerolineaceae bacterium oral taxon 439 dental calculus chromosome SRA raw PRJNA608555 SRS6212654 Eisenhofer2020 2020 10.1098/rstb.2019.0578 Tokyo 35.71 139.78 Japan A18027_Japan_Edo_8 Homo sapiens 200 10.1098/rstb.2019.0578 bacteria Anaerolineaceae bacterium oral taxon 439 dental calculus chromosome SRA raw PRJNA608555 SRS6212652 Eisenhofer2020 2020 10.1098/rstb.2019.0578 Tokyo 35.71 139.78 Japan A18026_Japan_Edo_7 Homo sapiens 200 10.1098/rstb.2019.0578 bacteria Anaerolineaceae bacterium oral taxon 439 dental calculus chromosome SRA raw PRJNA608555 SRS6212651 Eisenhofer2020 2020 10.1098/rstb.2019.0578 Tokyo 35.71 139.78 Japan A18025_Japan_Edo_6 Homo sapiens 200 10.1098/rstb.2019.0578 bacteria Anaerolineaceae bacterium oral taxon 439 dental calculus chromosome SRA raw PRJNA608555 SRS6212650 Eisenhofer2020 2020 10.1098/rstb.2019.0578 Tokyo 35.713 139.767 Japan A18024_Japan_Edo_5 Homo sapiens 200 10.1098/rstb.2019.0578 bacteria Anaerolineaceae bacterium oral taxon 439 dental calculus chromosome SRA raw PRJNA608555 SRS6212649 Eisenhofer2020 2020 10.1098/rstb.2019.0578 Miyano 39.12 141.81 Japan A18015_Japan_Jomon_1 Homo sapiens 2700 10.1098/rstb.2019.0578 bacteria Anaerolineaceae bacterium oral taxon 439 dental calculus chromosome SRA raw PRJNA608555 SRS6212648 Morozova2020 2020 10.1098/rstb.2019.0569 St. Dmitry Rostovsky fortress, Rostov-on-Don 47.23 39.68 Russia Rostov1639 Homo sapiens 200 10.1098/rstb.2019.0569 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB35426 ERS5071778,ERS5071779,ERS5071780,ERS5071772 Morozova2020 2020 10.1098/rstb.2019.0569 St. Dmitry Rostovsky fortress, Rostov-on-Don 47.23 39.68 Russia Rostov2033 Homo sapiens 200 10.1098/rstb.2019.0570 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB35426 ERS5071781,ERS5071782,ERS5071783,ERS5071773 Morozova2020 2020 10.1098/rstb.2019.0569 St. Dmitry Rostovsky fortress, Rostov-on-Don 47.23 39.68 Russia Rostov2039 Homo sapiens 200 10.1098/rstb.2019.0571 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB35426 ERS5071784,ERS5071785,ERS5071786,ERS5071787,ERS5071774 Morozova2020 2020 10.1098/rstb.2019.0569 Azov city, Rostov-on-Don 47.1 39.41 Russia Azov38 Homo sapiens 500 10.1098/rstb.2019.0572 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB35426 ERS5071788,ERS5071789,ERS5071790,ERS5071775 Morozova2020 2020 10.1098/rstb.2019.0569 Gdańsk ossuaries, Dominican Square 54.352 16.652 Poland Gdansk8 Homo sapiens 500 10.1098/rstb.2019.0573 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB35426 ERS5071791,ERS5071792,ERS5071793,ERS5071794,ERS5071776 Morozova2020 2020 10.1098/rstb.2019.0569 Gdańsk ossuaries, Dominican Square 54.352 16.652 Poland Rat Rattus rattus 500 10.1098/rstb.2019.0574 bacteria Yersinia pestis bone chromosome ENA raw PRJEB35426 ERS5071795,ERS5071796,ERS5071797,ERS5071770,ERS5071771,ERS5071777 Schuenemann2018b 2018 10.1371/journal.pntd.0006447 Convent of Santa Isabel, Mexico City 19.435 -99.141 Mexico 94A Homo sapiens 300 10.1371/journal.pntd.0006447 bacteria Treponema pallidum bone chromosome ENA raw PRJEB21276 ERS2470993 Schuenemann2018b 2018 10.1371/journal.pntd.0006447 Convent of Santa Isabel, Mexico City 19.435 -99.141 Mexico 94B Homo sapiens 300 10.1371/journal.pntd.0006447 bacteria Treponema pallidum bone chromosome ENA raw PRJEB21276 ERS2470994 Schuenemann2018b 2018 10.1371/journal.pntd.0006447 Convent of Santa Isabel, Mexico City 19.435 -99.141 Mexico 133 Homo sapiens 300 10.1371/journal.pntd.0006447 bacteria Treponema pallidum bone chromosome ENA raw PRJEB21276 ERS2470995 Ferrari2020 2020 10.1098/rstb.2019.0572 Hunterian Museum, Royal College of Surgeons, London 51.516 -0.116 United Kingdom RCSHC/P 328 Homo sapiens 200 10.1098/rstb.2019.0572 virus Variola virus tissue chromosome ENA raw PRJEB35140 ERS3935826,ERS3935827,ERS3935828,ERS3935829,ERS3935830,ERS3935831 Williams2020 2020 10.1128/mra.00850-20 Kodiak Island Collection, National Museum of Natural History (Washington D.C.) 38.891 -77.026 USA 364459 Homo sapiens 100 10.1128/mra.00850-20 bacteria Stenotrophomonas maltophilia dental calculus chromosome SRA raw,binned_mag,consensus PRJNA643812 SRS6939171 Williams2020 2020 10.1128/mra.00850-20 Medical Collection, American Museum of Natural History (New York) 40.781 -73.974 USA AMNH98137_Q01 Homo sapiens 100 10.1128/mra.00850-20 bacteria Acinetobacter baumannii dental calculus chromosome SRA raw,binned_mag,consensus PRJNA643812 SRS6939170 Fotakis2020 2020 10.1098/rstb.2019.0584 Library site, Trondheim 63.431 10.401 Norway SK92 Homo sapiens 400 10.1098/rstb.2019.0584 bacteria Mycobacterium leprae dental calculus chromosome ENA raw PRJEB37995 ERS5113011 Marciniak2016 2016 10.1016/j.cub.2016.10.016 Velia 40.158 15.159 Italy LV13 Homo sapiens 1800 10.1016/j.cub.2016.10.016 eukaryota Plasmodium falciparum tooth organelle SRA raw PRJNA348634 SRS1747845 Marciniak2016 2016 10.1016/j.cub.2016.10.016 Vagnari 40.85 16.28 Italy LG20 Homo sapiens 1700 10.1016/j.cub.2016.10.016 eukaryota Plasmodium falciparum tooth organelle SRA raw PRJNA348634 SRS1747846 Gelabert2016 2016 10.1073/pnas.1611017113 Sant Jaume d’Enveja, Ebro Delta 40.706 0.721 Spain CA, CM, POS Homo sapiens 100 10.1073/pnas.1611017113 eukaryota Plasmodium falciparum blood organelle SRA reference_aligned PRJNA338278 SRS1609867 Gelabert2016 2016 10.1073/pnas.1611017113 Sant Jaume d’Enveja, Ebro Delta 40.706 0.721 Spain CA, CM, POS Homo sapiens 100 10.1073/pnas.1611017113 eukaryota Plasmodium vivax blood organelle SRA reference_aligned PRJNA338278 SRS1607662 Taubenberger2005 2005 10.1038/nature04230 Armed Forces Institute of Pathology, Washington DC 38.975 -77.031 USA A/Brevig Mission/1/1918(H1N1) Homo sapiens 100 10.1073/pnas.96.4.1651 virus Influenza A virus lung tissue chromosome GenBank consensus Unknown DQ208309.1,DQ208310.1,DQ208311.1,AF116575.1,AY744935.1,AF250356.2,AY130766.1,AF333238.1 Lugli2017 2017 10.1186/s40168-016-0221-y Hauslabjoch 46.773 10.837 Italy Iceman Intestine (B0621,C1824,C1825,B0625) Homo sapiens 5300 10.1126/science.aad2545 bacteria Clostridium perfringens digestive tract contents chromosome ENA raw PRJEB11511 ERS942272,ERS942281,ERS942282,ERS942276 Lugli2017 2017 10.1186/s40168-016-0221-y Hauslabjoch 46.773 10.837 Italy Iceman Intestine (B0621,C1824,C1825,B0625) Homo sapiens 5300 10.1126/science.aad2545 bacteria Pseudomonas veronii digestive tract contents chromosome ENA raw PRJEB11511 ERS942272,ERS942281,ERS942282,ERS942276 BravoLopez2020 2020 10.1098/rstb.2019.0580 Cañada de La virgen 20.858 -100.928 Mexico CA_13 Homo sapiens 2500 10.1098/rstb.2019.0580 bacteria Tannerella forsythia tooth chromosome SRA reference_aligned PRJNA660267 SRS7288481 BravoLopez2020 2020 10.1098/rstb.2019.0580 Tabuco 20.959 -97.339 Mexico VE_42 Homo sapiens 3000 10.1098/rstb.2019.0580 bacteria Tannerella forsythia dental calculus chromosome SRA reference_aligned PRJNA660267 SRS7288482 BravoLopez2020 2020 10.1098/rstb.2019.0580 Toluquilla 20.883 -99.53 Mexico TO_2417Q Homo sapiens 700 10.1098/rstb.2019.0580 bacteria Tannerella forsythia tooth chromosome SRA reference_aligned PRJNA660267 SRS7288476 BravoLopez2020 2020 10.1098/rstb.2019.0580 Toluquilla 20.883 -99.53 Mexico TO_2417J Homo sapiens 2800 10.1098/rstb.2019.0580 bacteria Tannerella forsythia tooth chromosome SRA reference_aligned PRJNA660267 SRS7326368 BravoLopez2020 2020 10.1098/rstb.2019.0580 Toluquilla 20.883 -99.53 Mexico TO_333O Homo sapiens 2600 10.1098/rstb.2019.0580 bacteria Tannerella forsythia dental calculus chromosome SRA reference_aligned PRJNA660267 SRS7288477 BravoLopez2020 2020 10.1098/rstb.2019.0580 Tepeticpac 19.348 -98.235 Mexico TLA_01 Homo sapiens 500 10.1098/rstb.2019.0580 bacteria Tannerella forsythia dental calculus chromosome SRA reference_aligned PRJNA660267 SRS7288484 BravoLopez2020 2020 10.1098/rstb.2019.0580 Tepeticpac 19.348 -98.235 Mexico TLA_22 Homo sapiens 500 10.1098/rstb.2019.0580 bacteria Tannerella forsythia dental calculus chromosome SRA reference_aligned PRJNA660267 SRS7288483 BravoLopez2020 2020 10.1098/rstb.2019.0580 Hospital Real de San José de los Naturales 19.43 -99.14 Mexico HSJN_194 Homo sapiens 400 10.1098/rstb.2019.0580 bacteria Tannerella forsythia tooth chromosome SRA reference_aligned PRJNA660267 SRS7288487 BravoLopez2020 2020 10.1098/rstb.2019.0580 Hospital Real de San José de los Naturales 19.43 -99.14 Mexico HSJN_240 Homo sapiens 400 10.1098/rstb.2019.0580 bacteria Tannerella forsythia tooth chromosome SRA reference_aligned PRJNA660267 SRS7288488 BravoLopez2020 2020 10.1098/rstb.2019.0580 Temple of Immaculate Conception 19.347 -99.158 Mexico CO_09 Homo sapiens 200 10.1098/rstb.2019.0580 bacteria Tannerella forsythia tooth chromosome SRA reference_aligned PRJNA660267 SRS7288485 BravoLopez2020 2020 10.1098/rstb.2019.0580 Temple of Immaculate Conception 19.347 -99.158 Mexico CO_20 Homo sapiens 200 10.1098/rstb.2019.0580 bacteria Tannerella forsythia tooth chromosome SRA reference_aligned PRJNA660267 SRS7288486 BravoLopez2020 2020 10.1098/rstb.2019.0580 Ex College of San Ignacio of Loyola 20.592 -100.409 Mexico UAQG Homo sapiens 300 10.1098/rstb.2019.0580 bacteria Tannerella forsythia tooth chromosome SRA reference_aligned PRJNA660267 SRS7288478 Philips2020 2020 10.1186/s12864-020-06810-9 Masłomęcz 50.722 23.892 Poland PCA0088 Homo sapiens 1700 10.1186/s12864-020-06810-9 bacteria Tannerella forsythia tooth chromosome SRA reference_aligned PRJNA354503 SRS1815293 Kilinc2021 2021 10.1126/sciadv.abc4587 Anosovo (Angara river, Irkutsk Oblast, Cis-Baikal) 54.665 103.232 Russia Anosovo-1 (irk050) Homo sapiens 4000 10.1126/sciadv.abc4587 bacteria Yersinia pestis tooth chromosome ENA reference_aligned PRJEB39378 ERS4827048 Kilinc2021 2021 10.1126/sciadv.abc4587 Kamenka (Kolyma river, Yakutia, Far Eastern Federal District) 66.8 152.633333 Russia Kamenka-2 (yak023) Homo sapiens 3500 10.1126/sciadv.abc4587 bacteria Yersinia pestis tooth chromosome ENA reference_aligned PRJEB39378 ERS4827062 Haller2021 2021 10.1016/j.isci.2021.102419 Heiligen-Geist-Hospital, Lübeck 53.871 10.69 Germany HGH-1429 Homo sapiens 600 10.1016/j.isci.2021.102419 bacteria Salmonella enterica tooth chromosome ENA raw PRJEB41353 ERS5335226 Haller2021 2021 10.1016/j.isci.2021.102419 Heiligen-Geist-Hospital, Lübeck 53.871 10.69 Germany HGH-1510 Homo sapiens 600 10.1016/j.isci.2021.102419 bacteria Salmonella enterica tooth chromosome ENA raw PRJEB41353 ERS5335227 Haller2021 2021 10.1016/j.isci.2021.102419 Heiligen-Geist-Hospital, Lübeck 53.871 10.69 Germany HGH-1558 Homo sapiens 600 10.1016/j.isci.2021.102419 bacteria Salmonella enterica tooth chromosome ENA raw PRJEB41353 ERS5335228 Haller2021 2021 10.1016/j.isci.2021.102419 Heiligen-Geist-Hospital, Lübeck 53.871 10.69 Germany HGH-1579 Homo sapiens 600 10.1016/j.isci.2021.102419 bacteria Salmonella enterica tooth chromosome ENA raw PRJEB41353 ERS5335229 Haller2021 2021 10.1016/j.isci.2021.102419 Heiligen-Geist-Hospital, Lübeck 53.871 10.69 Germany HGH-1599 Homo sapiens 600 10.1016/j.isci.2021.102419 bacteria Salmonella enterica tooth chromosome ENA raw PRJEB41353 ERS5335230 Haller2021 2021 10.1016/j.isci.2021.102419 Heiligen-Geist-Hospital, Lübeck 53.871 10.69 Germany HGH-1600 Homo sapiens 600 10.1016/j.isci.2021.102419 bacteria Salmonella enterica tooth chromosome ENA raw PRJEB41353 ERS5335231 Haller2021 2021 10.1016/j.isci.2021.102419 Heiligen-Geist-Hospital, Lübeck 53.871 10.69 Germany HGH-1607 Homo sapiens 600 10.1016/j.isci.2021.102419 bacteria Salmonella enterica tooth chromosome ENA raw PRJEB41353 ERS5335232 Haller2021 2021 10.1016/j.isci.2021.102419 Heiligen-Geist-Hospital, Lübeck 53.871 10.69 Germany HGH-1638 Homo sapiens 600 10.1016/j.isci.2021.102419 bacteria Salmonella enterica tooth chromosome ENA raw PRJEB41353 ERS5335233 SeguinOrlando2021 2021 10.1016/j.isci.2021.102383 Lariey, Puy-Saint-Pierre, Hautes-Alpes 44.899 6.615 France LAR11 Homo sapiens 300 10.1016/j.isci.2021.102383 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB43291 ERS5823072 SeguinOrlando2021 2021 10.1016/j.isci.2021.102383 Lariey, Puy-Saint-Pierre, Hautes-Alpes 44.899 6.615 France LAR8 Homo sapiens 300 10.1016/j.isci.2021.102383 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB43291 ERS5823096 Guellil2020 2020 10.1073/pnas.2009677117 Maist, Chechnya 42.691 45.332 Russia CHE1 Homo sapiens 200 10.1073/pnas.2009677117 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB27821 ERS5051705 Guellil2020 2020 10.1073/pnas.2009677117 San Giovani in Fistola, Collalto Sabino 42.13 13.04 Italy COL001 Homo sapiens 600 10.1073/pnas.2009677117 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB27821 ERS5051706 Guellil2020 2020 10.1073/pnas.2009677117 Pestbacken, Holje 56.283 14.516 Sweden PEB10 Homo sapiens 200 10.1073/pnas.2009677117 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB27821 ERS5051704 Guellil2020 2020 10.1073/pnas.2009677117 San Procolo a Naturno, Naturns 46.652 11.009 Italy SPN1 Homo sapiens 300 10.1073/pnas.2009677117 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB27821 ERS5051707 Guellil2020 2020 10.1073/pnas.2009677117 San Procolo a Naturno, Naturns 46.652 11.009 Italy SPN7 Homo sapiens 300 10.1073/pnas.2009677117 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB27821 ERS5051708 Guellil2020 2020 10.1073/pnas.2009677117 San Procolo a Naturno, Naturns 46.652 11.009 Italy SPN8 Homo sapiens 300 10.1073/pnas.2009677117 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB27821 ERS5051709 Guellil2020 2020 10.1073/pnas.2009677117 San Procolo a Naturno, Naturns 46.652 11.009 Italy SPN13 Homo sapiens 300 10.1073/pnas.2009677117 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB27821 ERS5051710 Guellil2020 2020 10.1073/pnas.2009677117 San Procolo a Naturno, Naturns 46.652 11.009 Italy SPN14 Homo sapiens 300 10.1073/pnas.2009677117 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB27821 ERS5051711 Guellil2020 2020 10.1073/pnas.2009677117 San Procolo a Naturno, Naturns 46.652 11.009 Italy SPN19 Homo sapiens 300 10.1073/pnas.2009677117 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB27821 ERS5051712 Danneels2021 2021 10.1016/j.cub.2021.03.049 Lushoto District -4.8 38.29 Tanzania Herb4 Dioscorea sansibarensis 100 10.1016/j.cub.2021.03.049 bacteria Orrella dioscoreae leaf chromosome SRA raw PRJNA646369 SRS7008173 Danneels2021 2021 10.1016/j.cub.2021.03.049 Unknown 0.22 6.58 Sao Tome and Principe Herb5 Dioscorea sansibarensis 100 10.1016/j.cub.2021.03.049 bacteria Orrella dioscoreae leaf chromosome SRA raw PRJNA646369 SRS7008179 Danneels2021 2021 10.1016/j.cub.2021.03.049 Kitobola -5.36 14.51 Democratic Republic of the Congo Herb9 Dioscorea sansibarensis 100 10.1016/j.cub.2021.03.049 bacteria Orrella dioscoreae leaf chromosome SRA raw PRJNA646369 SRS7008183 Danneels2021 2021 10.1016/j.cub.2021.03.049 Yangambi 0.8 24.45 Democratic Republic of the Congo MK003 Dioscorea sansibarensis 100 10.1016/j.cub.2021.03.049 bacteria Orrella dioscoreae leaf chromosome SRA raw PRJNA646369 SRS7008154 Danneels2021 2021 10.1016/j.cub.2021.03.049 Unknown -4.03 21.75 Democratic Republic of the Congo MK011 Dioscorea sansibarensis 100 10.1016/j.cub.2021.03.049 bacteria Orrella dioscoreae leaf chromosome SRA raw PRJNA646369 SRS7008163 Danneels2021 2021 10.1016/j.cub.2021.03.049 Unknown -6.36 34.89 Tanzania MK012 Dioscorea sansibarensis 100 10.1016/j.cub.2021.03.049 bacteria Orrella dioscoreae leaf chromosome SRA raw PRJNA646369 SRS7008164 Danneels2021 2021 10.1016/j.cub.2021.03.049 Mikumi National Park -7.4 37.4 Tanzania MK014 Dioscorea sansibarensis 100 10.1016/j.cub.2021.03.049 bacteria Orrella dioscoreae leaf chromosome SRA raw PRJNA646369 SRS7008166 Danneels2021 2021 10.1016/j.cub.2021.03.049 Tukpwo 4.4 25.8 Democratic Republic of the Congo MK015 Dioscorea sansibarensis 100 10.1016/j.cub.2021.03.049 bacteria Orrella dioscoreae leaf chromosome SRA raw PRJNA646369 SRS7008167 Danneels2021 2021 10.1016/j.cub.2021.03.049 Unknown -4.03 21.75 Democratic Republic of the Congo MK016 Dioscorea sansibarensis 100 10.1016/j.cub.2021.03.049 bacteria Orrella dioscoreae leaf chromosome SRA raw PRJNA646369 SRS7008168 Danneels2021 2021 10.1016/j.cub.2021.03.049 Kidatu -7.7 36.96 Tanzania MK017 Dioscorea sansibarensis 100 10.1016/j.cub.2021.03.049 bacteria Orrella dioscoreae leaf chromosome SRA raw PRJNA646369 SRS7008169 Danneels2021 2021 10.1016/j.cub.2021.03.049 Kidatu -7.7 36.96 Tanzania MK019 Dioscorea sansibarensis 100 10.1016/j.cub.2021.03.049 bacteria Orrella dioscoreae leaf chromosome SRA raw PRJNA646369 SRS7008171 Danneels2021 2021 10.1016/j.cub.2021.03.049 Unknown -4.03 21.75 Democratic Republic of the Congo MK020 Dioscorea sansibarensis 100 10.1016/j.cub.2021.03.049 bacteria Orrella dioscoreae leaf chromosome SRA raw PRJNA646369 SRS7008172 Danneels2021 2021 10.1016/j.cub.2021.03.049 Mahenge -8.68 36.71 Tanzania MK023 Dioscorea sansibarensis 100 10.1016/j.cub.2021.03.049 bacteria Orrella dioscoreae leaf chromosome SRA raw PRJNA646369 SRS7008175 Danneels2021 2021 10.1016/j.cub.2021.03.049 Madanga -5.35 38.98 Tanzania MK025 Dioscorea sansibarensis 100 10.1016/j.cub.2021.03.049 bacteria Orrella dioscoreae leaf chromosome SRA raw PRJNA646369 SRS7008177 Susat2021 2021 10.1016/j.celrep.2021.109278 Riņņukalns 57.793 25.153 Latvia RV2039 Homo sapiens 5200 10.1007/s12520-020-01049-7 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB42185 ERS6638365 DeDios2021 2021 10.1016/j.isci.2021.103021 La Sagrera (Sant Martí de Provençals), Barcelona 41.42 2.19 Spain F1691-1810 Homo sapiens 400 10.1016/j.isci.2021.103021 bacteria Salmonella enterica tooth chromosome ENA raw PRJEB43276 ERS6464927 Campos2021 2021 10.1371/journal.ppat.1009714 Phoenix -20.285 57.512 Mauritius HERB_1937 Citrus sp. 100 10.1371/journal.ppat.1009714 bacteria Xanthomonas citri leaf chromosome SRA raw PRJNA668001 SRS7491184 GuzmanSolis2021 2021 10.7554/eLife.68612 Temple of Immaculate Conception 19.347 -99.158 Mexico COYC4 Homo sapiens 300 10.7554/eLife.68612 virus Parvovirus B19 tooth chromosome Dryad reference_aligned 10.5061/dryad.5x69p8d2s 864574 GuzmanSolis2021 2021 10.7554/eLife.68612 Hospital Real de San José de los Naturales 19.43 -99.14 Mexico HSJN194 Homo sapiens 400 10.7554/eLife.68612 virus Hepatitis B virus tooth chromosome Dryad reference_aligned 10.5061/dryad.5x69p8d2s 864575 GuzmanSolis2021 2021 10.7554/eLife.68612 Hospital Real de San José de los Naturales 19.43 -99.14 Mexico HSJN240 Homo sapiens 400 10.7554/eLife.68612 virus Parvovirus B19 tooth chromosome Dryad reference_aligned 10.5061/dryad.5x69p8d2s 864576 GuzmanSolis2021 2021 10.7554/eLife.68612 Hospital Real de San José de los Naturales 19.43 -99.14 Mexico HSJNC81 Homo sapiens 300 10.7554/eLife.68612 virus Parvovirus B19 tooth chromosome Dryad reference_aligned 10.5061/dryad.5x69p8d2s 864577 Wu2021 2021 10.1371/journal.ppat.1009886 Quanergou cemetery, Xinjiang 43.523 93.288 China XBQM20 Homo sapiens 3000 10.1371/journal.ppat.1009886 bacteria Salmonella enterica tooth chromosome SRA raw PRJNA730407 SRS9000645,SRS9000646 Wu2021 2021 10.1371/journal.ppat.1009886 Quanergou cemetery, Xinjiang 43.523 93.288 China XBQM90 Homo sapiens 3000 10.1371/journal.ppat.1009886 bacteria Salmonella enterica tooth chromosome SRA raw PRJNA730407 SRS9000648,SRS9000650 Wu2021 2021 10.1371/journal.ppat.1009886 Quanergou cemetery, Xinjiang 43.523 93.288 China XBQM7 Homo sapiens 3100 10.1371/journal.ppat.1009886 bacteria Salmonella enterica tooth chromosome SRA raw PRJNA730407 SRS9000651,SRS9000652 Wu2021 2021 10.1371/journal.ppat.1009886 Quanergou cemetery, Xinjiang 43.523 93.288 China XBQM83 Homo sapiens 3000 10.1371/journal.ppat.1009886 bacteria Salmonella enterica tooth chromosome SRA raw PRJNA730407 SRS9000653,SRS9000656 Wu2021 2021 10.1371/journal.ppat.1009886 Quanergou cemetery, Xinjiang 43.523 93.288 China XBQM11 Homo sapiens 3100 10.1371/journal.ppat.1009886 bacteria Salmonella enterica tooth chromosome SRA raw PRJNA730407 SRS9000654,SRS9000655 Wu2021 2021 10.1371/journal.ppat.1009886 Quanergou cemetery, Xinjiang 43.523 93.288 China XBQM64 Homo sapiens 3000 10.1371/journal.ppat.1009886 bacteria Salmonella enterica tooth chromosome SRA raw PRJNA730407 SRS9000647,SRS9000649 Kocher2021 2021 10.1126/science.abi5658 Alto de Rodilla 42.419 -3.485 Spain ADR001 Homo sapiens 7100 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597748 Kocher2021 2021 10.1126/science.abi5658 Akbeit 48.937 74.759 Kazakhstan AKB003 Homo sapiens 2600 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597749 Kocher2021 2021 10.1126/science.abi5658 Alalakh 36.238 36.385 Turkey ALA098 Homo sapiens 3700 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597750 Kocher2021 2021 10.1126/science.abi5658 Alalakh 36.238 36.385 Turkey ALA110 Homo sapiens 3900 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597751 Kocher2021 2021 10.1126/science.abi5658 Kaps 40.867 43.717 Armenia ARM001 Homo sapiens 5500 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597752 Kocher2021 2021 10.1126/science.abi5658 Kaps 40.867 43.717 Armenia ARM0023 Homo sapiens 5200 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597753 Kocher2021 2021 10.1126/science.abi5658 Arslantepe 38.382 38.361 Turkey ART005 Homo sapiens 5700 10.1126/science.abi5658 virus Hepatitis B virus bone chromosome ENA reference_aligned PRJEB45699 ERS6597754 Kocher2021 2021 10.1126/science.abi5658 Arslantepe 38.382 38.361 Turkey ART024 Homo sapiens 5400 10.1126/science.abi5658 virus Hepatitis B virus bone chromosome ENA reference_aligned PRJEB45699 ERS6597755 Kocher2021 2021 10.1126/science.abi5658 Brandýs nad Labem 50.187 14.664 Czech Republic BNL005 Homo sapiens 4100 10.1126/science.abi5658 virus Hepatitis B virus bone chromosome ENA reference_aligned PRJEB45699 ERS6597756 Kocher2021 2021 10.1126/science.abi5658 Boncuklu Hoyuk 37.752 32.865 Turkey BON020 Homo sapiens 10100 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597757 Kocher2021 2021 10.1126/science.abi5658 Bolshoy Oleni Ostrov 69.224 33.485 Russia BOO006 Homo sapiens 3500 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597758 Kocher2021 2021 10.1126/science.abi5658 Bolshoy Oleni Ostrov 69.224 33.485 Russia BOO008 Homo sapiens 3500 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597759 Kocher2021 2021 10.1126/science.abi5658 Berel 49.343 86.365 Kazakhstan BRE008 Homo sapiens 1700 10.1126/science.abi5658 virus Hepatitis B virus bone chromosome ENA reference_aligned PRJEB45699 ERS6597760 Kocher2021 2021 10.1126/science.abi5658 Berel 49.343 86.365 Kazakhstan BRE026 Homo sapiens 2300 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597761 Kocher2021 2021 10.1126/science.abi5658 Berel 49.343 86.365 Kazakhstan BRE028 Homo sapiens 2300 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597762 Kocher2021 2021 10.1126/science.abi5658 Carolinas II 22.985 -81.462 Cuba CAA002 Homo sapiens 1600 10.1126/science.abi5658 virus Hepatitis B virus bone chromosome ENA reference_aligned PRJEB45699 ERS6597763 Kocher2021 2021 10.1126/science.abi5658 Canimar abajo 23.038 -81.497 Cuba CAO009 Homo sapiens 1400 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597764 Kocher2021 2021 10.1126/science.abi5658 Cueva de Chaves 42.215 -0.139 Spain CHA003 Homo sapiens 7100 10.1126/science.abi5658 virus Hepatitis B virus bone chromosome ENA reference_aligned PRJEB45699 ERS6597765 Kocher2021 2021 10.1126/science.abi5658 Chotìn 47.809 18.224 Slovakia CHT001 Homo sapiens 2200 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597766 Kocher2021 2021 10.1126/science.abi5658 Cueva de las Lechuzas 38.646 -0.893 Spain CLL005 Homo sapiens 4900 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597767 Kocher2021 2021 10.1126/science.abi5658 Cuncaicha -15.33 -72.59 Peru CUN002 Homo sapiens 9100 10.1126/science.abi5658 virus Hepatitis B virus bone chromosome ENA reference_aligned PRJEB45699 ERS6597768 Kocher2021 2021 10.1126/science.abi5658 Derenburg 51.87 10.91 Germany DER027 Homo sapiens 4000 10.1126/science.abi5658 virus Hepatitis B virus bone chromosome ENA reference_aligned PRJEB45699 ERS6597769 Kocher2021 2021 10.1126/science.abi5658 Doggerland 53.0 2.54 Netherlands DOG007 Homo sapiens 9400 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597770 Kocher2021 2021 10.1126/science.abi5658 Els Trocs 42.496 0.507 Spain ELT005 Homo sapiens 7200 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597771 Kocher2021 2021 10.1126/science.abi5658 Els Trocs 42.496 0.507 Spain ELT006 Homo sapiens 5800 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597772 Kocher2021 2021 10.1126/science.abi5658 Gougenheim 48.7 7.57 France GGN005 Homo sapiens 5700 10.1126/science.abi5658 virus Hepatitis B virus bone chromosome ENA reference_aligned PRJEB45699 ERS6597773 Kocher2021 2021 10.1126/science.abi5658 Gurgy Les Noisats 47.864 3.56 France GRG001 Homo sapiens 7000 10.1126/science.abi5658 virus Hepatitis B virus bone chromosome ENA reference_aligned PRJEB45699 ERS6597774 Kocher2021 2021 10.1126/science.abi5658 Gurgy Les Noisats 47.864 3.56 France GRG036 Homo sapiens 6800 10.1126/science.abi5658 virus Hepatitis B virus bone chromosome ENA reference_aligned PRJEB45699 ERS6597775 Kocher2021 2021 10.1126/science.abi5658 Halberstadt 51.896 11.047 Germany HAL05 Homo sapiens 7100 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597776 Kocher2021 2021 10.1126/science.abi5658 Halberstadt 51.896 11.047 Germany HAL15 Homo sapiens 7000 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597777 Kocher2021 2021 10.1126/science.abi5658 Hostivice-Palouky 50.08 14.281 Czech Republic HOP004 Homo sapiens 4300 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597778 Kocher2021 2021 10.1126/science.abi5658 Ölsund, Hälsingland 61.632 16.36 Sweden HSL001 Homo sapiens 4400 10.1126/science.abi5658 virus Hepatitis B virus bone chromosome ENA reference_aligned PRJEB45699 ERS6597779 Kocher2021 2021 10.1126/science.abi5658 Vegachayoq Moqo, Huari -13.06 -74.2 Peru HUA056 Homo sapiens 600 10.1126/science.abi5658 virus Hepatitis B virus bone chromosome ENA reference_aligned PRJEB45699 ERS6597780 Kocher2021 2021 10.1126/science.abi5658 Vegachayoq Moqo, Huari -13.06 -74.2 Peru HUA063 Homo sapiens 600 10.1126/science.abi5658 virus Hepatitis B virus bone chromosome ENA reference_aligned PRJEB45699 ERS6597781 Kocher2021 2021 10.1126/science.abi5658 Yuzhny Oleni Ostrov 61.65 35.65 Russia I0061 Homo sapiens 8300 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597782 Kocher2021 2021 10.1126/science.abi5658 Halberstadt 51.896 11.047 Germany I0100 Homo sapiens 7000 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597783 Kocher2021 2021 10.1126/science.abi5658 Esperstedt 51.42 11.68 Germany I0104 Homo sapiens 4400 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597784 Kocher2021 2021 10.1126/science.abi5658 Rothenschirmbach 51.45 11.54 Germany I0111 Homo sapiens 4300 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597785 Kocher2021 2021 10.1126/science.abi5658 Hinxton 52.08 0.18 United Kingdom I0157 Homo sapiens 1200 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597786 Kocher2021 2021 10.1126/science.abi5658 Hinxton 52.08 0.18 United Kingdom I0161 Homo sapiens 1200 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597787 Kocher2021 2021 10.1126/science.abi5658 Oberwiederstedt-Schrammhoehe 51.666 11.532 Germany I0162 Homo sapiens 6400 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597788 Kocher2021 2021 10.1126/science.abi5658 Oberwiederstedt-Schrammhoehe 51.666 11.532 Germany I0163 Homo sapiens 6400 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597789 Kocher2021 2021 10.1126/science.abi5658 Latsch, Vinschgau 46.64 10.859 Italy I0216 Homo sapiens 2700 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597790 Kocher2021 2021 10.1126/science.abi5658 Latsch, Vinschgau 46.64 10.859 Italy I0217 Homo sapiens 2700 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597791 Kocher2021 2021 10.1126/science.abi5658 Els Trocs 42.496 0.507 Spain I0411 Homo sapiens 7200 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597792 Kocher2021 2021 10.1126/science.abi5658 Arroyal I 42.4 -3.75 Spain I0461 Homo sapiens 4300 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597793 Kocher2021 2021 10.1126/science.abi5658 Salzmuende 51.533 11.833 Germany I0551 Homo sapiens 5200 10.1126/science.abi5658 virus Hepatitis B virus bone chromosome ENA reference_aligned PRJEB45699 ERS6597794 Kocher2021 2021 10.1126/science.abi5658 Salzmuende 51.533 11.833 Germany I0554 Homo sapiens 5200 10.1126/science.abi5658 virus Hepatitis B virus bone chromosome ENA reference_aligned PRJEB45699 ERS6597795 Kocher2021 2021 10.1126/science.abi5658 Yunatsite 42.232 24.263 Bulgaria I0784 Homo sapiens 6300 10.1126/science.abi5658 virus Hepatitis B virus bone chromosome ENA reference_aligned PRJEB45699 ERS6597796 Kocher2021 2021 10.1126/science.abi5658 Karsdorf 51.283 11.65 Germany I0795 Homo sapiens 7100 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597797 Kocher2021 2021 10.1126/science.abi5658 Karsdorf 51.283 11.65 Germany I0796 Homo sapiens 7100 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597798 Kocher2021 2021 10.1126/science.abi5658 Karsdorf 51.283 11.65 Germany I0797 Homo sapiens 7100 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597799 Kocher2021 2021 10.1126/science.abi5658 Salzmuende 51.533 11.833 Germany I0798 Homo sapiens 5200 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597800 Kocher2021 2021 10.1126/science.abi5658 Semikarakorsk, Donskoy 47.236 39.702 Russia I0960 Homo sapiens 2600 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597801 Kocher2021 2021 10.1126/science.abi5658 Huaca Pucllana -12.115 -77.034 Peru I0972 Homo sapiens 700 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597802 Kocher2021 2021 10.1126/science.abi5658 Samtavro 41.851 44.719 Georgia I1321 Homo sapiens 1900 10.1126/science.abi5658 virus Hepatitis B virus bone chromosome ENA reference_aligned PRJEB45699 ERS6597803 Kocher2021 2021 10.1126/science.abi5658 Verchnyaya Koban, North Ossetia 42.9 44.46 Russia I1344 Homo sapiens 700 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597804 Kocher2021 2021 10.1126/science.abi5658 Halberstadt 51.896 11.047 Germany I2005 Homo sapiens 7200 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597805 Kocher2021 2021 10.1126/science.abi5658 Halberstadt 51.896 11.047 Germany I2006 Homo sapiens 7200 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597806 Kocher2021 2021 10.1126/science.abi5658 Halberstadt 51.896 11.047 Germany I2017 Homo sapiens 7200 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597807 Kocher2021 2021 10.1126/science.abi5658 Halberstadt 51.896 11.047 Germany I2020 Homo sapiens 7200 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597808 Kocher2021 2021 10.1126/science.abi5658 Halberstadt 51.896 11.047 Germany I2027 Homo sapiens 7200 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597809 Kocher2021 2021 10.1126/science.abi5658 Halberstadt 51.896 11.047 Germany I2031 Homo sapiens 7200 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597810 Kocher2021 2021 10.1126/science.abi5658 Halberstadt 51.896 11.047 Germany I2032 Homo sapiens 7200 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597811 Kocher2021 2021 10.1126/science.abi5658 İkiztepe 41.614 35.871 Turkey IKI009 Homo sapiens 5200 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597812 Kocher2021 2021 10.1126/science.abi5658 Is Bittuleris 39.868 9.236 Italy ISB002 Homo sapiens 3700 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597813 Kocher2021 2021 10.1126/science.abi5658 Jazikovo 57.121 38.152 Russia JAZ001 Homo sapiens 7300 10.1126/science.abi5658 virus Hepatitis B virus bone chromosome ENA reference_aligned PRJEB45699 ERS6597814 Kocher2021 2021 10.1126/science.abi5658 Karanaevskiy 55.639 58.297 Russia KAP002 Homo sapiens 3500 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597815 Kocher2021 2021 10.1126/science.abi5658 Kabardinka 43.826 42.717 Russia KBD002 Homo sapiens 4100 10.1126/science.abi5658 virus Hepatitis B virus bone chromosome ENA reference_aligned PRJEB45699 ERS6597816 Kocher2021 2021 10.1126/science.abi5658 Kudachurt 43.354 43.722 Russia KDC001 Homo sapiens 3900 10.1126/science.abi5658 virus Hepatitis B virus bone chromosome ENA reference_aligned PRJEB45699 ERS6597817 Kocher2021 2021 10.1126/science.abi5658 Kamid el-Loz 33.622 35.823 Lebanon KEL045 Homo sapiens 3800 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597818 Kocher2021 2021 10.1126/science.abi5658 Kilteasheen 54.007 -8.202 Ireland KIL044 Homo sapiens 800 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597819 Kocher2021 2021 10.1126/science.abi5658 Kleinaitingen 48.218 10.846 Germany KLE031 Homo sapiens 3900 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597820 Kocher2021 2021 10.1126/science.abi5658 Krakauer Berg 51.755 11.727 Germany KRA001 Homo sapiens 800 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597821 Kocher2021 2021 10.1126/science.abi5658 Krakauer Berg 51.755 11.727 Germany KRA010 Homo sapiens 700 10.1126/science.abi5658 virus Hepatitis B virus bone chromosome ENA reference_aligned PRJEB45699 ERS6597822 Kocher2021 2021 10.1126/science.abi5658 Kuelap -6.418 -77.924 Peru KUE033 Homo sapiens 600 10.1126/science.abi5658 virus Hepatitis B virus bone chromosome ENA reference_aligned PRJEB45699 ERS6597823 Kocher2021 2021 10.1126/science.abi5658 Khvalynsk 52.501 48.094 Russia KVK001 Homo sapiens 10300 10.1126/science.abi5658 virus Hepatitis B virus bone chromosome ENA reference_aligned PRJEB45699 ERS6597824 Kocher2021 2021 10.1126/science.abi5658 Leubingen 51.206 11.183 Germany LEU065 Homo sapiens 4100 10.1126/science.abi5658 virus Hepatitis B virus bone chromosome ENA reference_aligned PRJEB45699 ERS6597825 Kocher2021 2021 10.1126/science.abi5658 Loschbour rock shelter 49.77 6.24 Luxembourg Loschbour Homo sapiens 8100 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597826 Kocher2021 2021 10.1126/science.abi5658 Machu Picchu -13.163 -72.546 Peru MAP007 Homo sapiens 600 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597827 Kocher2021 2021 10.1126/science.abi5658 Mayachnyiy bugor 47.095 47.211 Russia MAY017 Homo sapiens 600 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597828 Kocher2021 2021 10.1126/science.abi5658 Mikulovice 49.992 15.777 Czech Republic MIB003 Homo sapiens 3900 10.1126/science.abi5658 virus Hepatitis B virus bone chromosome ENA reference_aligned PRJEB45699 ERS6597829 Kocher2021 2021 10.1126/science.abi5658 Mikulovice 49.992 15.777 Czech Republic MIB011 Homo sapiens 3800 10.1126/science.abi5658 virus Hepatitis B virus bone chromosome ENA reference_aligned PRJEB45699 ERS6597830 Kocher2021 2021 10.1126/science.abi5658 Mikulovice 49.992 15.777 Czech Republic MIB040 Homo sapiens 3900 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597831 Kocher2021 2021 10.1126/science.abi5658 Mikulovice 49.992 15.777 Czech Republic MIB041 Homo sapiens 3800 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597832 Kocher2021 2021 10.1126/science.abi5658 Mikulovice 49.992 15.777 Czech Republic MIS002 Homo sapiens 3900 10.1126/science.abi5658 virus Hepatitis B virus bone chromosome ENA reference_aligned PRJEB45699 ERS6597833 Kocher2021 2021 10.1126/science.abi5658 Maryinskaya 5 43.905 43.522 Russia MK5004 Homo sapiens 5200 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597834 Kocher2021 2021 10.1126/science.abi5658 Maryinskaya 5 43.905 43.522 Russia MK5009 Homo sapiens 4800 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597835 Kocher2021 2021 10.1126/science.abi5658 Mikulovice 49.992 15.777 Czech Republic MKL025 Homo sapiens 3800 10.1126/science.abi5658 virus Hepatitis B virus bone chromosome ENA reference_aligned PRJEB45699 ERS6597836 Kocher2021 2021 10.1126/science.abi5658 Malaya Ryazan' 53.224 49.315 Russia MLR005 Homo sapiens 700 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597837 Kocher2021 2021 10.1126/science.abi5658 Minino II 59.382 39.396 Russia MN2003 Homo sapiens 10600 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597838 Kocher2021 2021 10.1126/science.abi5658 Kanaljorden, Motala 58.548 14.972 Sweden MOT001 Homo sapiens 7800 10.1126/science.abi5658 virus Hepatitis B virus bone chromosome ENA reference_aligned PRJEB45699 ERS6597839 Kocher2021 2021 10.1126/science.abi5658 Malonne petit Ry 50.474 4.873 Belgium MPR001 Homo sapiens 10500 10.1126/science.abi5658 virus Hepatitis B virus bone chromosome ENA reference_aligned PRJEB45699 ERS6597840 Kocher2021 2021 10.1126/science.abi5658 Murzihinskiy II tomb 55.735 51.65 Russia MUR007 Homo sapiens 6500 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597841 Kocher2021 2021 10.1126/science.abi5658 Nevinnomyskiy 3 44.735 41.939 Russia NV3001 Homo sapiens 4000 10.1126/science.abi5658 virus Hepatitis B virus bone chromosome ENA reference_aligned PRJEB45699 ERS6597842 Kocher2021 2021 10.1126/science.abi5658 Oakington 52.26 0.061 United Kingdom OAI017 Homo sapiens 1500 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597843 Kocher2021 2021 10.1126/science.abi5658 Oberottmarshausen 48.233 10.861 Germany OOH025 Homo sapiens 3600 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597844 Kocher2021 2021 10.1126/science.abi5658 Orenburg 51.81 55.18 Russia ORE002 Homo sapiens 2600 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597845 Kocher2021 2021 10.1126/science.abi5658 Prague 8 - Ďáblice 50.148 14.485 Czech Republic PDA001 Homo sapiens 4100 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597846 Kocher2021 2021 10.1126/science.abi5658 Prague 8 - Ďáblice 50.148 14.485 Czech Republic PDA003 Homo sapiens 4200 10.1126/science.abi5658 virus Hepatitis B virus bone chromosome ENA reference_aligned PRJEB45699 ERS6597847 Kocher2021 2021 10.1126/science.abi5658 Pendimoun 43.81 7.51 France PEN003 Homo sapiens 7400 10.1126/science.abi5658 virus Hepatitis B virus bone chromosome ENA reference_aligned PRJEB45699 ERS6597848 Kocher2021 2021 10.1126/science.abi5658 Purun Llacta de Soloco -6.3 -77.701 Peru PLS004 Homo sapiens 400 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597849 Kocher2021 2021 10.1126/science.abi5658 Peñón de la Zorra 38.645 -0.87 Spain PLZ001 Homo sapiens 3600 10.1126/science.abi5658 virus Hepatitis B virus bone chromosome ENA reference_aligned PRJEB45699 ERS6597850 Kocher2021 2021 10.1126/science.abi5658 Quedlinburg 51.787 11.154 Germany QUE004 Homo sapiens 4300 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597851 Kocher2021 2021 10.1126/science.abi5658 Regensburg Minoritenweg 49.017 12.105 Germany RMI002 Homo sapiens 600 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597852 Kocher2021 2021 10.1126/science.abi5658 Serra Crabiles (Sennori) 40.79 8.59 Italy SEC006 Homo sapiens 4400 10.1126/science.abi5658 virus Hepatitis B virus bone chromosome ENA reference_aligned PRJEB45699 ERS6597853 Kocher2021 2021 10.1126/science.abi5658 Sedgeford 52.9 0.544 United Kingdom SED009 Homo sapiens 1200 10.1126/science.abi5658 virus Hepatitis B virus bone chromosome ENA reference_aligned PRJEB45699 ERS6597854 Kocher2021 2021 10.1126/science.abi5658 Shagara 55.237 40.1 Russia SGR003 Homo sapiens 3900 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597855 Kocher2021 2021 10.1126/science.abi5658 Shagara 55.132 40.175 Russia SGR004 Homo sapiens 5000 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597856 Kocher2021 2021 10.1126/science.abi5658 Sheksovo II 56.528 40.179 Russia SHK001 Homo sapiens 800 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597857 Kocher2021 2021 10.1126/science.abi5658 S'isteridolzu 40.624 8.636 Italy SID005 Homo sapiens 6100 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597858 Kocher2021 2021 10.1126/science.abi5658 Hospital Real de San José de los Naturales 19.43 -99.14 Mexico SJN005 Homo sapiens 400 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597859 Kocher2021 2021 10.1126/science.abi5658 Hospital Real de San José de los Naturales 19.43 -99.14 Mexico SJN013 Homo sapiens 500 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597860 Kocher2021 2021 10.1126/science.abi5658 Stuttgart-Mühlhausen I 48.84 9.228 Germany SMH004 Homo sapiens 7200 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597861 Kocher2021 2021 10.1126/science.abi5658 St. Rombout's churchyard 51.029 4.479 Belgium STR144 Homo sapiens 400 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597862 Kocher2021 2021 10.1126/science.abi5658 Su Asedazzu 39.417 9.236 Italy SUA002 Homo sapiens 4100 10.1126/science.abi5658 virus Hepatitis B virus bone chromosome ENA reference_aligned PRJEB45699 ERS6597863 Kocher2021 2021 10.1126/science.abi5658 Su Asedazzu 39.417 9.236 Italy SUA007 Homo sapiens 4000 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597864 Kocher2021 2021 10.1126/science.abi5658 Trinitapoli 41.355 16.088 Italy TRI011 Homo sapiens 3300 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597865 Kocher2021 2021 10.1126/science.abi5658 Tutkaul 38.3 69.283 Tajikistan TTK002 Homo sapiens 8300 10.1126/science.abi5658 virus Hepatitis B virus bone chromosome ENA reference_aligned PRJEB45699 ERS6597866 Kocher2021 2021 10.1126/science.abi5658 Yuzhny Oleni Ostrov 61.938 35.261 Russia UOO011 Homo sapiens 8100 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597867 Kocher2021 2021 10.1126/science.abi5658 Yuzhny Oleni Ostrov 61.938 35.261 Russia UOO024 Homo sapiens 8100 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597868 Kocher2021 2021 10.1126/science.abi5658 Yuzhny Oleni Ostrov 61.938 35.261 Russia UOO033 Homo sapiens 8100 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597869 Kocher2021 2021 10.1126/science.abi5658 Grotta dell'Uzzo 38.11 12.787 Italy UZZ061 Homo sapiens 6700 10.1126/science.abi5658 virus Hepatitis B virus bone chromosome ENA reference_aligned PRJEB45699 ERS6597870 Kocher2021 2021 10.1126/science.abi5658 Grotta dell'Uzzo 38.11 12.787 Italy UZZ075 Homo sapiens 7300 10.1126/science.abi5658 virus Hepatitis B virus bone chromosome ENA reference_aligned PRJEB45699 ERS6597871 Kocher2021 2021 10.1126/science.abi5658 Grotta dell'Uzzo 38.11 12.787 Italy UZZ081 Homo sapiens 8600 10.1126/science.abi5658 virus Hepatitis B virus bone chromosome ENA reference_aligned PRJEB45699 ERS6597872 Kocher2021 2021 10.1126/science.abi5658 Grotta dell'Uzzo 38.11 12.787 Italy UZZ099 Homo sapiens 6000 10.1126/science.abi5658 virus Hepatitis B virus bone chromosome ENA reference_aligned PRJEB45699 ERS6597873 Kocher2021 2021 10.1126/science.abi5658 Varna 43.219 27.914 Bulgaria VAR021 Homo sapiens 6500 10.1126/science.abi5658 virus Hepatitis B virus bone chromosome ENA reference_aligned PRJEB45699 ERS6597874 Kocher2021 2021 10.1126/science.abi5658 Vliněves 50.373 14.449 Czech Republic VLI016 Homo sapiens 4400 10.1126/science.abi5658 virus Hepatitis B virus bone chromosome ENA reference_aligned PRJEB45699 ERS6597875 Kocher2021 2021 10.1126/science.abi5658 Vliněves 50.373 14.449 Czech Republic VLI060 Homo sapiens 3900 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597876 Kocher2021 2021 10.1126/science.abi5658 Vertaizon 45.774 3.287 France VTZ008 Homo sapiens 6400 10.1126/science.abi5658 virus Hepatitis B virus bone chromosome ENA reference_aligned PRJEB45699 ERS6597877 Kocher2021 2021 10.1126/science.abi5658 Vertaizon 45.774 3.287 France VTZ011 Homo sapiens 6600 10.1126/science.abi5658 virus Hepatitis B virus bone chromosome ENA reference_aligned PRJEB45699 ERS6597878 Kocher2021 2021 10.1126/science.abi5658 Wehringen-Hochfeld 48.247 10.801 Germany WEH008 Homo sapiens 3900 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597879 Kocher2021 2021 10.1126/science.abi5658 Wehringen-Hochfeld 48.247 10.801 Germany WEH009 Homo sapiens 4000 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597880 Kocher2021 2021 10.1126/science.abi5658 Wenigensömmern 51.174 11.136 Germany WSN010 Homo sapiens 420 10.1126/science.abi5658 virus Hepatitis B virus bone chromosome ENA reference_aligned PRJEB45699 ERS6597881 Kocher2021 2021 10.1126/science.abi5658 Wenigensömmern 51.174 11.136 Germany WSN012 Homo sapiens 4200 10.1126/science.abi5658 virus Hepatitis B virus bone chromosome ENA reference_aligned PRJEB45699 ERS6597882 Kocher2021 2021 10.1126/science.abi5658 Yunatsite 42.23 24.26 Bulgaria YUN048 Homo sapiens 6500 10.1126/science.abi5658 virus Hepatitis B virus bone chromosome ENA reference_aligned PRJEB45699 ERS6597883 Kocher2021 2021 10.1126/science.abi5658 Zweisimmen Kirchgasse 46.554 7.372 Switzerland ZWE008 Homo sapiens 600 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597884 AndradesValtuena2022 2022 10.1073/pnas.2116722119 Dereivka I 48.91 33.76 Ukraine I5884 Homo sapiens 4200 10.1073/pnas.2116722119 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB51099 ERS10777163 AndradesValtuena2022 2022 10.1073/pnas.2116722119 Vlineves 50.373 14.449 Czech Republic VLI092 Homo sapiens 4200 10.1073/pnas.2116722119 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB51099 ERS10777164 AndradesValtuena2022 2022 10.1073/pnas.2116722119 Krasnogvardeyskoe 45.825 41.582 Russia KNK001 Homo sapiens 4200 10.1073/pnas.2116722119 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB51099 ERS10777165 AndradesValtuena2022 2022 10.1073/pnas.2116722119 Großstorkwitz 51.189 12.267 Germany GRS004 Homo sapiens 4100 10.1073/pnas.2116722119 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB51099 ERS10777166 AndradesValtuena2022 2022 10.1073/pnas.2116722119 Hostivice-Palouky 50.08 14.281 Czech Republic HOP001 Homo sapiens 3800 10.1073/pnas.2116722119 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB51099 ERS10777167 AndradesValtuena2022 2022 10.1073/pnas.2116722119 Hostivice-Palouky 50.08 14.281 Czech Republic HOP004 Homo sapiens 3800 10.1073/pnas.2116722119 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB51099 ERS10777168 AndradesValtuena2022 2022 10.1073/pnas.2116722119 Kaluzhnyy 1 44.848 42.219 Russia KLZ001 Homo sapiens 3800 10.1073/pnas.2116722119 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB51099 ERS10777169 AndradesValtuena2022 2022 10.1073/pnas.2116722119 Chociwel 50.796 17.094 Poland CHC004 Homo sapiens 3600 10.1073/pnas.2116722119 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB51099 ERS10777170 AndradesValtuena2022 2022 10.1073/pnas.2116722119 Kleinaitingen 48.218 10.846 Germany KLE031 Homo sapiens 3500 10.1073/pnas.2116722119 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB51099 ERS10777171 AndradesValtuena2022 2022 10.1073/pnas.2116722119 Mikulovice 49.992 15.777 Czech Republic MIB054 Homo sapiens 3600 10.1073/pnas.2116722119 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB51099 ERS10777172,ERS10777173,ERS10777174 AndradesValtuena2022 2022 10.1073/pnas.2116722119 Kleinaitingen 48.218 10.846 Germany KLE048 Homo sapiens 3400 10.1073/pnas.2116722119 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB51099 ERS10777175 AndradesValtuena2022 2022 10.1073/pnas.2116722119 Oberottmarshausen 48.233 10.861 Germany OOH003 Homo sapiens 3300 10.1073/pnas.2116722119 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB51099 ERS10777176 AndradesValtuena2022 2022 10.1073/pnas.2116722119 Dolmen “El Sotillo” 42.573 -2.621 Spain I2470 Homo sapiens 3100 10.1073/pnas.2116722119 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB51099 ERS10777177 AndradesValtuena2022 2022 10.1073/pnas.2116722119 Arbulag sum, Khövsgöl 49.65 99.72 Mongolia ARS007 Homo sapiens 3000 10.1073/pnas.1813608115 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB51099 ERS10777178 AndradesValtuena2022 2022 10.1073/pnas.2116722119 Kyzyl 48.278 75.356 Kazakhstan KZL002 Homo sapiens 2500 10.1073/pnas.2116722119 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB51099 ERS10777179 AndradesValtuena2022 2022 10.1073/pnas.2116722119 Velešovice 49.178 16.848 Czech Republic VEL003 Homo sapiens 4000 10.1073/pnas.2116722119 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB51099 ERS10777180 AndradesValtuena2022 2022 10.1073/pnas.2116722119 Grushevskoe 45.063 41.54 Russia GRH001 Homo sapiens 2700 10.1073/pnas.2116722119 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB51099 ERS10777181 Granehall2021 2021 10.1186/s40168-021-01132-8 Isarco valley, Bressanone Elvas necropoli 17/Brixen Elvas 46.73 11.67 Italy 2102 Homo sapiens 1300 10.1016/j.quaint.2013.07.052 archaea Methanobrevibacter oralis dental calculus chromosome ENA raw PRJEB43389 ERS6205401 Pfrengle2021 2021 10.1186/s12915-021-01120-2 Studzenka 53.585 30.029 Belarus BEL024 Homo sapiens 800 10.1186/s12915-021-01120-2 bacteria Mycobacterium leprae bone chromosome SRA raw PRJNA721828 SRS9825982 Pfrengle2021 2021 10.1186/s12915-021-01120-2 Nonneseter, Bergen 60.39 5.333 Norway Bergen Homo sapiens 700 10.1186/s12915-021-01120-2 bacteria Mycobacterium leprae tooth chromosome SRA raw PRJNA721828 SRS9826036,SRS9826037,SRS9826038 Pfrengle2021 2021 10.1186/s12915-021-01120-2 Church End, Cherry Hinton, Cambridge 52.196 0.174 United Kingdom CHRY023 Homo sapiens 900 10.1186/s12915-021-01120-2 bacteria Mycobacterium leprae bone chromosome SRA raw PRJNA721828 SRS9826045,SRS9825983 Pfrengle2021 2021 10.1186/s12915-021-01120-2 Church End, Cherry Hinton, Cambridge 52.196 0.174 United Kingdom CHRY044 Homo sapiens 900 10.1186/s12915-021-01120-2 bacteria Mycobacterium leprae tooth chromosome SRA raw PRJNA721828 SRS9826047 Pfrengle2021 2021 10.1186/s12915-021-01120-2 Barrejo, Cordiñanes de Valdeón, León 43.167 -4.903 Spain COR_XVIII Homo sapiens 800 10.1186/s12915-021-01120-2 bacteria Mycobacterium leprae bone chromosome SRA raw PRJNA721828 SRS9826000,SRS9826002 Pfrengle2021 2021 10.1186/s12915-021-01120-2 Edix Hill, Cambridgeshire 52.136 -0.011 United Kingdom EDI006 Homo sapiens 1400 10.1186/s12915-021-01120-2 bacteria Mycobacterium leprae tooth chromosome SRA raw PRJNA721828 SRS9826051 Pfrengle2021 2021 10.1186/s12915-021-01120-2 Hospital of St John the Evangelist, Cambridge 52.207 0.118 United Kingdom JDS097 Homo sapiens 700 10.1186/s12915-021-01120-2 bacteria Mycobacterium leprae tooth chromosome SRA raw PRJNA721828 SRS9826001 Pfrengle2021 2021 10.1186/s12915-021-01120-2 Kirk Hill, St Andrews 56.339 -2.785 United Kingdom KirkHill Homo sapiens 900 10.1186/s12915-021-01120-2 bacteria Mycobacterium leprae bone chromosome SRA raw PRJNA721828 SRS9825996,SRS9825997,SRS9825998 Pfrengle2021 2021 10.1186/s12915-021-01120-2 Valle da Gafaria, Lagos 37.098 -8.674 Portugal PAVd09_I.5 Homo sapiens 600 10.1186/s12915-021-01120-2 bacteria Mycobacterium leprae bone chromosome SRA raw PRJNA721828 SRS9826040,SRS9826041 Pfrengle2021 2021 10.1186/s12915-021-01120-2 St. Petersburg 59.9 30.3 Russia R7546-671 Homo sapiens 100 10.1186/s12915-021-01120-2 bacteria Mycobacterium leprae tooth chromosome SRA raw PRJNA721828 SRS9826003,SRS9826004,SRS9826044 Pfrengle2021 2021 10.1186/s12915-021-01120-2 Hospital of Sant Llàtzer / Santa Margarida, Barcelona 41.38 2.16 Spain UF101 Homo sapiens 1000 10.1186/s12915-021-01120-2 bacteria Mycobacterium leprae tissue chromosome SRA raw PRJNA721828 SRS9826022,SRS9826023 Pfrengle2021 2021 10.1186/s12915-021-01120-2 Hospital of Sant Llàtzer / Santa Margarida, Barcelona 41.38 2.16 Spain UF11 Homo sapiens 200 10.1186/s12915-021-01120-2 bacteria Mycobacterium leprae tissue chromosome SRA raw PRJNA721828 SRS9826014,SRS9826015 Pfrengle2021 2021 10.1186/s12915-021-01120-2 Hospital of Sant Llàtzer / Santa Margarida, Barcelona 41.38 2.16 Spain UF21 Homo sapiens 400 10.1186/s12915-021-01120-2 bacteria Mycobacterium leprae tissue chromosome SRA raw PRJNA721828 SRS9826017,SRS9826018 Pfrengle2021 2021 10.1186/s12915-021-01120-2 Hospital of Sant Llàtzer / Santa Margarida, Barcelona 41.38 2.16 Spain UF25 Homo sapiens 500 10.1186/s12915-021-01120-2 bacteria Mycobacterium leprae tissue chromosome SRA raw PRJNA721828 SRS9826019,SRS9826020 Pfrengle2021 2021 10.1186/s12915-021-01120-2 Hospital of Sant Llàtzer / Santa Margarida, Barcelona 41.38 2.16 Spain UF700 Homo sapiens 900 10.1186/s12915-021-01120-2 bacteria Mycobacterium leprae bone chromosome SRA raw PRJNA721828 SRS9825988,SRS9825989 Pfrengle2021 2021 10.1186/s12915-021-01120-2 Hospital of Sant Llàtzer / Santa Margarida, Barcelona 41.38 2.16 Spain UF703 Homo sapiens 900 10.1186/s12915-021-01120-2 bacteria Mycobacterium leprae tissue chromosome SRA raw PRJNA721828 SRS9825992,SRS9825993 Pfrengle2021 2021 10.1186/s12915-021-01120-2 Hospital of Sant Llàtzer / Santa Margarida, Barcelona 41.38 2.16 Spain UF8 Homo sapiens 400 10.1186/s12915-021-01120-2 bacteria Mycobacterium leprae tissue chromosome SRA raw PRJNA721828 SRS9826012,SRS9826013 Pfrengle2021 2021 10.1186/s12915-021-01120-2 Hospital of Sant Llàtzer / Santa Margarida, Barcelona 41.38 2.16 Spain UF800 Homo sapiens 800 10.1186/s12915-021-01120-2 bacteria Mycobacterium leprae bone chromosome SRA raw PRJNA721828 SRS9826024,SRS9825995 Pfrengle2021 2021 10.1186/s12915-021-01120-2 Hospital of Sant Llàtzer / Santa Margarida, Barcelona 41.38 2.16 Spain UF803 Homo sapiens 900 10.1186/s12915-021-01120-2 bacteria Mycobacterium leprae tissue chromosome SRA raw PRJNA721828 SRS9826029,SRS9826030 Jager2022 2022 10.1016/j.tube.2022.102181 Dominican church of Vác 47.777 19.127 Hungary body_210 Homo sapiens 200 10.1016/j.tube.2022.102181 bacteria Mycobacterium tuberculosis bone chromosome SRA raw PRJNA795622 SRS11554883 Rieux2021 2021 10.1038/s41598-021-00518-w Bambari 5.766 20.661 Central African Republic P04808771 Manihot glaziovii 100 10.1038/s41598-021-00518-w virus African cassava mosaic virus leaf chromosome SRA raw PRJNA698751 SRS8172159 Guellil2021 2021 10.1038/s41598-021-98214-2 Lazaretto dell’Osservanza, Imola 44.349 11.707 Italy IMO2 Homo sapiens 300 10.1038/s41598-021-98214-2 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB27822 ERS8555205,ERS8555208,ERS8555209,ERS8555210,ERS8555211 Guellil2022 2022 10.1186/s13059-021-02580-z Edix Hill, Cambridgeshire 52.136 -0.011 United Kingdom EDI064 Homo sapiens 1500 10.1186/s13059-021-02580-z bacteria Haemophilus influenzae tooth chromosome ENA raw PRJEB45013 ERS8968539 Guellil2022 2022 10.1186/s13059-021-02580-z Edix Hill, Cambridgeshire 52.136 -0.011 United Kingdom EDI064 Homo sapiens 1500 10.1186/s13059-021-02580-z bacteria Yersinia pestis tooth chromosome ENA raw PRJEB45013 ERS8968539 Spyrou2022 2022 10.1038/s41586-022-04800-3 Kara-Djigach cemetery (Chapel 1), Chüy Valley 42.805 74.685 Kyrgyzstan BSK001 (176/4; Grave 19/20) Homo sapiens 600 10.1038/s41586-022-04800-3 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB46734 ERS11205112 Spyrou2022 2022 10.1038/s41586-022-04800-3 Kara-Djigach cemetery (Chapel 1), Chüy Valley 42.805 74.685 Kyrgyzstan BSK003 (176/7; Grave 28/29) Homo sapiens 600 10.1038/s41586-022-04800-3 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB46734 ERS11205113 Spyrou2022 2022 10.1038/s41586-022-04800-3 Kara-Djigach cemetery (Chapel 1), Chüy Valley 42.805 74.685 Kyrgyzstan BSK007 (5559/2; Grave 9) Homo sapiens 600 10.1038/s41586-022-04800-3 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB46734 ERS11205114 Neumann2022 2022 10.1016/j.cub.2022.06.094 Hagios Charalambos cave, Crete 35.177 25.444 Greece HGC009 Homo sapiens 4100 10.1016/j.cub.2022.06.094 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB52494 ERS11891570 Neumann2022 2022 10.1016/j.cub.2022.06.094 Hagios Charalambos cave, Crete 35.177 25.444 Greece HGC068 Homo sapiens 4200 10.1016/j.cub.2022.06.094 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB52494 ERS11891571 Neumann2022 2022 10.1016/j.cub.2022.06.094 Hagios Charalambos cave, Crete 35.177 25.444 Greece HGC004 Homo sapiens 4100 10.1016/j.cub.2022.06.094 bacteria Salmonella enterica tooth chromosome ENA raw PRJEB52494 ERS11891572 Neumann2022 2022 10.1016/j.cub.2022.06.094 Hagios Charalambos cave, Crete 35.177 25.444 Greece HGC040 Homo sapiens 4100 10.1016/j.cub.2022.06.094 bacteria Salmonella enterica tooth chromosome ENA raw PRJEB52494 ERS11891573 Vagene2022 2022 10.1038/s41467-022-28562-8 Moquegua, M6-Estuquiña -17.199 -70.943 Peru 82 Homo sapiens 700 10.1038/s41467-022-28562-8 bacteria Mycobacterium pinnipedii bone chromosome SRA raw PRJNA779792 SRS11049946 Vagene2022 2022 10.1038/s41467-022-28562-8 Las Delicias, Bogotá 4.601 -74.146 Colombia 281 Homo sapiens 700 10.1038/s41467-022-28562-8 bacteria Mycobacterium pinnipedii bone chromosome SRA raw PRJNA779792 SRS11049948 Vagene2022 2022 10.1038/s41467-022-28562-8 Candelaria La Nueva, Bogotá 4.57 -74.149 Colombia 386 Homo sapiens 500 10.1038/s41467-022-28562-8 bacteria Mycobacterium pinnipedii bone chromosome SRA raw PRJNA779792 SRS11049947 Guellil2022b 2022 10.1126/sciadv.abo4435 Hospital of St John the Evangelist, Cambridge 52.207 0.118 United Kingdom JDS005 Homo sapiens 600 10.1126/sciadv.abo4435 virus Human alphaherpesvirus 1 tooth chromosome ENA raw PRJEB46097 ERS12438280 Guellil2022b 2022 10.1126/sciadv.abo4435 Edix Hill, Cambridgeshire 52.136 -0.011 United Kingdom EDI111 Homo sapiens 1500 10.1126/sciadv.abo4435 virus Human alphaherpesvirus 1 tooth chromosome ENA raw PRJEB46097 ERS12438281 Austin2022 2022 10.1038/s42003-022-03890-z City Hospital #2, St. Louis, Missouri 38.632 -90.222 USA St.LI Homo sapiens 100 10.1038/s42003-022-03890-z bacteria Klebsiella pneumoniae dental calculus chromosome SRA raw PRJNA851947 SRS13524932 Austin2022 2022 10.1038/s42003-022-03890-z City Hospital #2, St. Louis, Missouri 38.632 -90.222 USA St.LI Homo sapiens 100 10.1038/s42003-022-03890-z bacteria Acinetobacter nosocomialis dental calculus chromosome SRA raw PRJNA851947 SRS13524932 Austin2022 2022 10.1038/s42003-022-03890-z City Hospital #2, St. Louis, Missouri 38.632 -90.222 USA St.LI Homo sapiens 100 10.1038/s42003-022-03890-z bacteria Acinetobacter junii dental calculus chromosome SRA raw PRJNA851947 SRS13524932 Long2022 2022 10.1038/s42003-022-03527-1 Basilica of St. Domenico Maggiore, Naples 40.848 14.254 Italy NASD1 Homo sapiens 400 10.1038/s42003-022-03527-1 bacteria Escherichia coli calcified nodule chromosome SRA raw PRJNA810725 SRS12115743 Quagliariello2022 2022 10.1038/s41467-022-34416-0 Fermo, Marche 43.16 13.71 Italy Fer.T75 Homo sapiens 4400 10.1038/s41467-022-34416-0 bacteria Olsenella sp. oral taxon 807 dental calculus chromosome SRA raw PRJNA791766 SRS11653538 Quagliariello2022 2022 10.1038/s41467-022-34416-0 Ripatetta, Lucera, Foggia 41.3 15.2 Italy Rip.USD618 Homo sapiens 6100 10.1038/s41467-022-34416-0 bacteria Olsenella sp. oral taxon 807 dental calculus chromosome SRA raw PRJNA791766 SRS11653590 Quagliariello2022 2022 10.1038/s41467-022-34416-0 Ripatetta, Lucera, Foggia 41.3 15.2 Italy Rip.USD628 Homo sapiens 6100 10.1038/s41467-022-34416-0 bacteria Olsenella sp. oral taxon 807 dental calculus chromosome SRA raw PRJNA791766 SRS11653591 Quagliariello2022 2022 10.1038/s41467-022-34416-0 Bandita San Pantaleo, Tarquinia, Latium 42.25 11.75 Italy Tar.T71 Homo sapiens 4700 10.1038/s41467-022-34416-0 bacteria Olsenella sp. oral taxon 807 dental calculus chromosome SRA raw PRJNA791766 SRS11653602 Quagliariello2022 2022 10.1038/s41467-022-34416-0 Torre de Rubeis, Troia 41.22 15.18 Italy TR177 Homo sapiens 5200 10.1038/s41467-022-34416-0 bacteria Olsenella sp. oral taxon 807 dental calculus chromosome SRA raw PRJNA791766 SRS11653605 Quagliariello2022 2022 10.1038/s41467-022-34416-0 Passo di Corvo, Amendola plain 41.553 15.611 Italy PC-T5 Homo sapiens 7400 10.1038/s41467-022-34416-0 bacteria Olsenella sp. oral taxon 807 dental calculus chromosome SRA raw PRJNA791766 SRS11653578 Bonczarowska2022 2022 10.1186/s13059-022-02806-8 Lauchheim Mittelhofen settlement, Baden-Württemberg 48.872 10.25 Germany G78T Homo sapiens 1300 10.1186/s13059-022-02806-8 virus Hepatitis B virus tooth chromosome ENA raw PRJEB49149 ERS9069028 Bonczarowska2022 2022 10.1186/s13059-022-02806-8 Lauchheim Mittelhofen settlement, Baden-Württemberg 48.872 10.25 Germany G79T Homo sapiens 1300 10.1186/s13059-022-02806-8 virus Hepatitis B virus tissue chromosome ENA raw PRJEB49149 ERS9069039 Bonczarowska2022 2022 10.1186/s13059-022-02806-8 Lauchheim Mittelhofen settlement, Baden-Württemberg 48.872 10.25 Germany G27T Homo sapiens 1300 10.1186/s13059-022-02806-8 virus Hepatitis B virus tooth chromosome ENA raw PRJEB49149 ERS9069033 Bonczarowska2022 2022 10.1186/s13059-022-02806-8 Lauchheim Mittelhofen settlement, Baden-Württemberg 48.872 10.25 Germany G83T Homo sapiens 1300 10.1186/s13059-022-02806-8 virus Hepatitis B virus tissue chromosome ENA raw PRJEB49149 ERS9069041 Bonczarowska2022 2022 10.1186/s13059-022-02806-8 Lauchheim Mittelhofen settlement, Baden-Württemberg 48.872 10.25 Germany G31T Homo sapiens 1200 10.1186/s13059-022-02806-8 virus Variola virus tissue chromosome ENA raw PRJEB49149 ERS9069030 Bonczarowska2022 2022 10.1186/s13059-022-02806-8 Lauchheim Mittelhofen settlement, Baden-Württemberg 48.872 10.25 Germany G83T Homo sapiens 1300 10.1186/s13059-022-02806-8 bacteria Mycobacterium leprae tissue chromosome ENA raw PRJEB49149 ERS9069041 Bonczarowska2022 2022 10.1186/s13059-022-02806-8 Lauchheim Mittelhofen settlement, Baden-Württemberg 48.872 10.25 Germany G83T Homo sapiens 1300 10.1186/s13059-022-02806-8 virus Parvovirus B19 tissue chromosome ENA raw PRJEB49149 ERS9069041 Braun2020 2020 10.3390/microorganisms8020298 Chemnitz, Sachsen 50.83 12.92 Germany Chemnitz 1878 (M-0290509) Bovidae 140 10.3390/microorganisms8020298 bacteria Bacillus anthracis blood chromosome SRA raw PRJNA309927 SRS5865127 Eaton2023 2023 10.1016/j.cub.2023.01.064 Hågerup , Faaborg-Midtfyn Municipality 55.17 10.35 Denmark A19 x21 Homo sapiens 800 10.1016/j.cub.2023.01.064 bacteria Yersinia pestis tooth chromosome SRA raw PRJNA926136 SRS16579972 Eaton2023 2023 10.1016/j.cub.2023.01.064 Faldborg, Viborg Municipality 56.45 9.40 Denmark Gr GCx15 Homo sapiens 600 10.1016/j.cub.2023.01.064 bacteria Yersinia pestis tooth chromosome SRA raw PRJNA926136 SRS16579984 Eaton2023 2023 10.1016/j.cub.2023.01.064 Ribe Gråbrødre, Esbjerg Municipality 55.32 8.76 Denmark G.25A Homo sapiens 600 10.1016/j.cub.2023.01.064 bacteria Yersinia pestis tooth chromosome SRA raw PRJNA926136 SRS16579986 Eaton2023 2023 10.1016/j.cub.2023.01.064 Ribe Gråbrødre, Esbjerg Municipality 55.32 8.76 Denmark G. 16 Homo sapiens 600 10.1016/j.cub.2023.01.064 bacteria Yersinia pestis tooth chromosome SRA raw PRJNA926136 SRS16580002 Eaton2023 2023 10.1016/j.cub.2023.01.064 Ribe Gråbrødre, Esbjerg Municipality 55.32 8.76 Denmark G207 Homo sapiens 600 10.1016/j.cub.2023.01.064 bacteria Yersinia pestis tooth chromosome SRA raw PRJNA926136 SRS16579991 Eaton2023 2023 10.1016/j.cub.2023.01.064 Ribe Gråbrødre, Esbjerg Municipality 55.32 8.76 Denmark G. 861 x1035 Homo sapiens 600 10.1016/j.cub.2023.01.064 bacteria Yersinia pestis tooth chromosome SRA raw PRJNA926136 SRS16579973 Eaton2023 2023 10.1016/j.cub.2023.01.064 Faldborg, Viborg Municipality 56.45 9.40 Denmark ID 319 Homo sapiens 600 10.1016/j.cub.2023.01.064 bacteria Yersinia pestis tooth chromosome SRA raw PRJNA926136 SRS16579981 Eaton2023 2023 10.1016/j.cub.2023.01.064 Ribe Gråbrødre, Esbjerg Municipality 55.32 8.76 Denmark G. 25B x98 Homo sapiens 600 10.1016/j.cub.2023.01.064 bacteria Yersinia pestis tooth chromosome SRA raw PRJNA926136 SRS16579982 Eaton2023 2023 10.1016/j.cub.2023.01.064 Sejet, Horsens Municipality 55.81 9.92 Denmark A146x3011 Homo sapiens 600 10.1016/j.cub.2023.01.064 bacteria Yersinia pestis tooth chromosome SRA raw PRJNA926136 SRS16579983 Eaton2023 2023 10.1016/j.cub.2023.01.064 Tirup, Horsens Municipality 55.86 9.81 Denmark G371 Homo sapiens 700 10.1016/j.cub.2023.01.064 bacteria Yersinia pestis tooth chromosome SRA raw PRJNA926136 SRS16579985 Eaton2023 2023 10.1016/j.cub.2023.01.064 Ribe Lindegården, Esbjerg Municipality 55.32 8.78 Denmark x1265 Homo sapiens 600 10.1016/j.cub.2023.01.064 bacteria Yersinia pestis tooth chromosome SRA raw PRJNA926136 SRS16579987 Eaton2023 2023 10.1016/j.cub.2023.01.064 Ole Wormsgade, Horsens Municipality 55.86 9.86 Denmark x1155 A1155 Homo sapiens 700 10.1016/j.cub.2023.01.064 bacteria Yersinia pestis tooth chromosome SRA raw PRJNA926136 SRS16580001 Eaton2023 2023 10.1016/j.cub.2023.01.064 Ole Wormsgade, Horsens Municipality 55.86 9.86 Denmark A1480 x1480 Homo sapiens 700 10.1016/j.cub.2023.01.064 bacteria Yersinia pestis tooth chromosome SRA raw PRJNA926136 SRS16579988 Rifkin2023 2023 10.1038/s42003-023-04582-y Ballito Bay -29.53 31.21 South Africa BBayA Homo sapiens 1900 10.1038/s42003-023-04582-y bacteria Rickettsia felis tissue chromosome SRA raw PRJNA930765 SRS16665771 Sarhan2023 2023 10.1186/s12915-022-01509-7 Barfüsserkirche/Franciscan church of Basel 47.554 7.589 Switzerland 3045 Homo sapiens 200 10.1186/s12915-022-01509-7 bacteria Mycolicibacterium sp. brain chromosome ENA raw PRJEB44723 ERS10216488 Swali2023 2023 10.1038/s41467-023-38393-w Charterhouse Warren, Mendip Hills, Somerset 51.299 -2.715 United Kingdom C10091 Homo sapiens 4000 10.1038/s41467-023-38393-w bacteria Yersinia pestis tooth chromosome ENA raw PRJEB61230 ERS14891340 Swali2023 2023 10.1038/s41467-023-38393-w Charterhouse Warren, Mendip Hills, Somerset 51.299 -2.715 United Kingdom C10098 Homo sapiens 4000 10.1038/s41467-023-38393-w bacteria Yersinia pestis tooth chromosome ENA raw PRJEB61230 ERS14891341,ERS14891342 Swali2023 2023 10.1038/s41467-023-38393-w Levens Deer Park ring cairn, Leven, Cumbria 54.268 -2.761 United Kingdom C10928 Homo sapiens 3900 10.1038/s41467-023-38393-w bacteria Yersinia pestis tooth chromosome ENA raw PRJEB61230 ERS14909714,ERS14891343 Clavel2023 2023 10.1016/j.isci.2023.106787 La Major Cathedral, Marseille, Bouches-du-Rhône 43.3 5.365 France MAJ75 Homo sapiens 300 10.1016/j.isci.2023.106787 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB59233 ERS14555610,ERS14555611,ERS14555612,ERS14555613,ERS14555614,ERS14555615,ERS14555616,ERS14555617 Clavel2023 2023 10.1016/j.isci.2023.106787 La Major Cathedral, Marseille, Bouches-du-Rhône 43.3 5.365 France MAJ46 Homo sapiens 300 10.1016/j.isci.2023.106787 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB59233 ERS14555595,ERS14555596,ERS14555597,ERS14555598,ERS14555599,ERS14555600,ERS14555601,ERS14555602,ERS14555603,ERS14555604 Clavel2023 2023 10.1016/j.isci.2023.106787 La Major Cathedral, Marseille, Bouches-du-Rhône 43.3 5.365 France MAJ38 Homo sapiens 300 10.1016/j.isci.2023.106787 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB59233,PRJEB59234 ERS14555592,ERS14555591,ERS14555590,ERS14555589,ERS14555588,ERS14555587 Clavel2023 2023 10.1016/j.isci.2023.106787 Hôtel-Dieu Saint-Jean-Baptiste, Amiens 49.898 2.299 France AMIENS268 Homo sapiens 400 10.1016/j.isci.2023.106787 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB59233 ERS14555669,ERS14555670,ERS14555671 Clavel2023 2023 10.1016/j.isci.2023.106787 Les Rayettes, Martigues 43.415 5.039 France RAY1015 Homo sapiens 300 10.1016/j.isci.2023.106787 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB59233 ERS14555624,ERS14555625,ERS14555626 Clavel2023 2023 10.1016/j.isci.2023.106787 Les Rayettes, Martigues 43.415 5.039 France RAY1028 Homo sapiens 300 10.1016/j.isci.2023.106787 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB59233 ERS14555627,ERS14555628 Clavel2023 2023 10.1016/j.isci.2023.106787 Les Rayettes, Martigues 43.415 5.039 France RAY3030 Homo sapiens 300 10.1016/j.isci.2023.106787 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB59233 ERS14555635,ERS14555636 Clavel2023 2023 10.1016/j.isci.2023.106787 Lariey, Puy-Saint-Pierre, Hautes-Alpes 44.899 6.615 France LAR8 Homo sapiens 400 10.1016/j.isci.2023.106787 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB59233 ERS5823096 Clavel2023 2023 10.1016/j.isci.2023.106787 Lariey, Puy-Saint-Pierre, Hautes-Alpes 44.899 6.615 France LAR11 Homo sapiens 400 10.1016/j.isci.2023.106787 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB59233 ERS5823072 Clavel2023 2023 10.1016/j.isci.2023.106787 Lariey, Puy-Saint-Pierre, Hautes-Alpes 44.899 6.615 France LAR27 Homo sapiens 400 10.1016/j.isci.2023.106787 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB59233 ERS5823086,ERS14555637,ERS14555638 Clavel2023 2023 10.1016/j.isci.2023.106787 Maladrerie Saint-Lazare, Beauvais 49.415 2.101 France SQ8723 Homo sapiens 400 10.1016/j.isci.2023.106787 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB59233 ERS14555652,ERS14555653,ERS14555654 Clavel2023 2023 10.1016/j.isci.2023.106787 Maladrerie Saint-Lazare, Beauvais 49.415 2.101 France SQ8833 Homo sapiens 400 10.1016/j.isci.2023.106787 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB59233 ERS14555642 Clavel2023 2023 10.1016/j.isci.2023.106787 Maladrerie Saint-Lazare, Beauvais 49.415 2.101 France SQ8962 Homo sapiens 400 10.1016/j.isci.2023.106787 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB59233 ERS14555651 Neumann2023 2023 10.1553/archaeologia107 Drasenhofen 48.758 16.651 Austria DSH008 Homo sapiens 3900 10.1553/archaeologia107 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB61070 ERS15547237,ERS15547235 Neumann2023 2023 10.1553/archaeologia107 Drasenhofen 48.758 16.651 Austria DSH025 Homo sapiens 3900 10.1553/archaeologia107 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB61070 ERS15547238,ERS15547236 Bonczarowska2023 2023 10.1098/rspb.2023.0622 Sct. Trinitatis/Drotten,Viborg 56.45 9.4 Denmark X52 Homo sapiens 500 10.1098/rspb.2023.0622 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB60595 ERS14773586 Bonczarowska2023 2023 10.1098/rspb.2023.0622 Sejet Ødekirkegård 55.816 9.925 Denmark X3003 Homo sapiens 400 10.1098/rspb.2023.0622 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB60595 ERS14773585 Parker2023 2023 10.1371/journal.ppat.1011404 Krakauer Berg, Peißen, Halle (Saale), Saxony-Anhalt 51.5 12.05 Germany KRA004 Homo sapiens 600 10.1371/journal.ppat.1011404 bacteria Yersinia pestis skeleton chromosome ENA raw PRJEB61096 ERS14884856,ERS14884857,ERS14884858,ERS14884859,ERS14884860 Parker2023 2023 10.1371/journal.ppat.1011404 Krakauer Berg, Peißen, Halle (Saale), Saxony-Anhalt 51.5 12.05 Germany KRA008 Homo sapiens 600 10.1371/journal.ppat.1011404 bacteria Yersinia pestis skeleton chromosome ENA raw PRJEB61096 ERS14884861 Parker2023 2023 10.1371/journal.ppat.1011404 Krakauer Berg, Peißen, Halle (Saale), Saxony-Anhalt 51.5 12.05 Germany KRA018 Homo sapiens 600 10.1371/journal.ppat.1011404 bacteria Yersinia pestis skeleton chromosome ENA raw PRJEB61096 ERS14884862 Parker2023 2023 10.1371/journal.ppat.1011404 Krakauer Berg, Peißen, Halle (Saale), Saxony-Anhalt 51.5 12.05 Germany KRA028 Homo sapiens 600 10.1371/journal.ppat.1011404 bacteria Yersinia pestis skeleton chromosome ENA raw PRJEB61096 ERS14884863 Parker2023 2023 10.1371/journal.ppat.1011404 Krakauer Berg, Peißen, Halle (Saale), Saxony-Anhalt 51.5 12.05 Germany KRA032 Homo sapiens 600 10.1371/journal.ppat.1011404 bacteria Yersinia pestis skeleton chromosome ENA raw PRJEB61096 ERS14884864 Long2023 2023 10.1371/journal.ppat.1011538 Convento del Beato Sante, Mombaroccio, Pesaro e Urbino 43.789 12.861 Italy Sante Brancorsini Homo sapiens 600 10.1371/journal.ppat.1011538 bacteria Brucella melitensis kidney stone chromosome SRA raw PRJNA966239 SRS17532534 Campos2023 2023 10.1038/s41467-023-39950-z Java -7.23 109.72 Indonesia HERB_1845 Citrus aurantiifolia 200 10.1038/s41467-023-39950-z bacteria Xanthomonas citri pv. citri leaf chromosome SRA raw PRJNA883598 SRS15248955 Campos2023 2023 10.1038/s41467-023-39950-z Khasi hills 25.58 91.63 India HERB_1852 Citrus medica 100 10.1038/s41467-023-39950-z bacteria Xanthomonas citri pv. citri leaf chromosome SRA raw PRJNA883598 SRS15248956 Campos2023 2023 10.1038/s41467-023-39950-z Java -7.23 109.72 Indonesia HERB_1854 Citrus aurantiifolia 100 10.1038/s41467-023-39950-z bacteria Xanthomonas citri pv. citri leaf chromosome SRA raw PRJNA883598 SRS15248959 Campos2023 2023 10.1038/s41467-023-39950-z Bangladesh 24 90 Bangladesh HERB_1859 Citrus medica 100 10.1038/s41467-023-39950-z bacteria Xanthomonas citri pv. citri leaf chromosome SRA raw PRJNA883598 SRS15248960 Campos2023 2023 10.1038/s41467-023-39950-z India 22 79 India HERB_1865 Citrus medica 100 10.1038/s41467-023-39950-z bacteria Xanthomonas citri pv. citri leaf chromosome SRA raw PRJNA883598 SRS15248961 Campos2023 2023 10.1038/s41467-023-39950-z Luzon 16.5 122.2 Philippines HERB_1884 Citrus medica 100 10.1038/s41467-023-39950-z bacteria Xanthomonas citri pv. citri leaf chromosome SRA raw PRJNA883598 SRS15248962 Campos2023 2023 10.1038/s41467-023-39950-z Java -7.23 109.72 Indonesia HERB_1911 Citrus aurantiifolia 100 10.1038/s41467-023-39950-z bacteria Xanthomonas citri pv. citri leaf chromosome SRA raw PRJNA883598 SRS15248963 Campos2023 2023 10.1038/s41467-023-39950-z Philippines 15 120 Philippines HERB_1915 Citrus sp. 100 10.1038/s41467-023-39950-z bacteria Xanthomonas citri pv. citri leaf chromosome SRA raw PRJNA883598 SRS15248964 Campos2023 2023 10.1038/s41467-023-39950-z Yunnan 24.55 101.45 China HERB_1922 Citrus medica 100 10.1038/s41467-023-39950-z bacteria Xanthomonas citri pv. citri leaf chromosome SRA raw PRJNA883598 SRS15248965 Campos2023 2023 10.1038/s41467-023-39950-z Tlofofo 13.33 144.73 Guam HERB_1946 Citrus sp. 100 10.1038/s41467-023-39950-z bacteria Xanthomonas citri pv. citri leaf chromosome SRA raw PRJNA883598 SRS15248966 Campos2023 2023 10.1038/s41467-023-39950-z Sanichare 26.67 88.02 Nepal HERB_1963 Citrus medica 100 10.1038/s41467-023-39950-z bacteria Xanthomonas citri pv. citri leaf chromosome SRA raw PRJNA883598 SRS15248957 Campos2023 2023 10.1038/s41467-023-39950-z Mauritius -20.3 57.6 Mauritius HERB_1974 Citrus sp. 100 10.1038/s41467-023-39950-z bacteria Xanthomonas citri pv. citri leaf chromosome SRA raw PRJNA883598 SRS15248958 Hodgkins2023 2023 10.1038/s41467-023-41174-0 Sanganji Shell Mound 37.87 140.91 Japan Sanganji-A1-Tooth Homo sapiens 3000 10.1038/jhg.2016.110 bacteria Clostridium tetani tooth chromosome SRA raw PRJDB4223 DRS021185 Hodgkins2023 2023 10.1038/s41467-023-41174-0 Sanganji Shell Mound 37.87 140.91 Japan Sanganji-A2-Tooth Homo sapiens 3000 10.1038/jhg.2016.110 bacteria Clostridium tetani tooth chromosome SRA raw PRJDB4223 DRS021186 Hodgkins2023 2023 10.1038/s41467-023-41174-0 Deir Rifeh Cemetery 27.097 31.207 Egypt Deir-Rifeh-KNIII-Tooth Homo sapiens 3800 10.1016/j.jasrep.2017.12.025 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB20294 ERS1647163 Hodgkins2023 2023 10.1038/s41467-023-41174-0 Deir Rifeh Cemetery 27.097 31.207 Egypt Deir-Rifeh-KNII-Tooth Homo sapiens 3800 10.1016/j.jasrep.2017.12.025 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB20294 ERS1660772 Hodgkins2023 2023 10.1038/s41467-023-41174-0 Haunstetten Unterer Talweg 85 48.318 10.891 Germany Augsburg-Tooth Homo sapiens 4200 10.1016/j.cub.2017.10.025 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB19335 ERS1892067 Hodgkins2023 2023 10.1038/s41467-023-41174-0 Tenerife 28.291 -16.629 Spain Tenerife-011-Tooth Homo sapiens 1200 10.1016/j.cub.2017.09.059 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB86458 ERS1906197 Hodgkins2023 2023 10.1038/s41467-023-41174-0 Tenerife 28.291 -16.629 Spain Tenerife-004-Tooth Homo sapiens 1200 10.1016/j.cub.2017.09.059 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB86458 ERS1906198 Hodgkins2023 2023 10.1038/s41467-023-41174-0 Gran Canaria 27.92 -15.547 Spain GranCanaria-005-Tooth Homo sapiens 1000 10.1016/j.cub.2017.09.059 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB86458 ERS1906199 Hodgkins2023 2023 10.1038/s41467-023-41174-0 Gran Canaria 27.92 -15.547 Spain GranCanaria-008-Tooth Homo sapiens 1000 10.1016/j.cub.2017.09.059 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB86458 ERS1906202 Hodgkins2023 2023 10.1038/s41467-023-41174-0 Tenerife 28.291 -16.629 Spain Tenerife-012-Tooth Homo sapiens 1300 10.1016/j.cub.2017.09.059 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB86458 ERS1906203 Hodgkins2023 2023 10.1038/s41467-023-41174-0 Tenerife 28.291 -16.629 Spain Tenerife-013-Tooth Homo sapiens 1300 10.1016/j.cub.2017.09.059 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB86458 ERS1906204 Hodgkins2023 2023 10.1038/s41467-023-41174-0 Teposcolula-Yucundaa; Mixteca Alta region, Oaxaca 17.502 -97.467 Mexico Tepos_35-Tooth Homo sapiens 400 10.1038/s41559-017-0446-6 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB23438 ERS2020227 Hodgkins2023 2023 10.1038/s41467-023-41174-0 Cueva de los Lagos 41.962 -1.993 Spain Cueva_de_los_Lagos-Tooth Homo sapiens 4000 10.1073/pnas.1717762115 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB23467 ERS2059523 Hodgkins2023 2023 10.1038/s41467-023-41174-0 Yámana 54.933 -67.616 Chile Yámana-Tooth Homo sapiens 800 10.1186/s40168-016-0221-y bacteria Clostridium tetani tooth chromosome ENA raw PRJEB24629 ERS2160137 Hodgkins2023 2023 10.1038/s41467-023-41174-0 Vác 47.784 19.135 Hungary Vác-Mummy-Tissue Homo sapiens 200 10.1038/ncomms7717 bacteria Clostridium tetani tissue chromosome ENA raw PRJEB7454 ERS563409 Hodgkins2023 2023 10.1038/s41467-023-41174-0 Maderas Enco -18.478 -70.312 Chile Chinchorro-Mummy-Bone Homo sapiens 200 10.1126/science.aab3884 bacteria Clostridium tetani bone chromosome ENA raw PRJEB9733 ERS793932 Hodgkins2023 2023 10.1038/s41467-023-41174-0 Piedra Gorda 23.6 -109.6 Mexico Pericues-BC28-Bone Homo sapiens 550 10.1126/science.aab3884 bacteria Clostridium tetani bone chromosome ENA raw PRJEB9733 ERS793942 Hodgkins2023 2023 10.1038/s41467-023-41174-0 l’Observance in Marseille 43.296 5.369 France Marseille-Tooth Homo sapiens 200 10.7554/eLife.12994 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB12163 ERS1020860 Hodgkins2023 2023 10.1038/s41467-023-41174-0 Saints Màrtirs Just i Pastor, Barcelona 41.387 2.168 Spain Barcelona-3031-Tooth Homo sapiens 1400 10.1016/j.chom.2016.05.012 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB13664 ERS1124787 Hodgkins2023 2023 10.1038/s41467-023-41174-0 Saint-Laurent-de-la-Cabrerisse 43.084 2.7 France SLC-France-Tooth Homo sapiens 1300 10.1073/pnas.1812865115 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB24499 ERS2865271 Hodgkins2023 2023 10.1038/s41467-023-41174-0 Karlova, Tartu 58.371 26.732 Estonia Karolva-Tooth Homo sapiens 4200 10.1098/rspb.2019.1528 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB32786 ERS3568107 Hodgkins2023 2023 10.1038/s41467-023-41174-0 Abusir el-Meleq, Middle Egypt 29.9 31.2 Egypt Abusir1655-Tooth Homo sapiens 3100 10.1038/ncomms15694 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB33848 ERS3635957 Hodgkins2023 2023 10.1038/s41467-023-41174-0 Abusir el-Meleq, Middle Egypt 29.9 31.2 Egypt Abusir1595-Tooth Homo sapiens 2900 10.1038/ncomms15694 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB33848 ERS3635963 Hodgkins2023 2023 10.1038/s41467-023-41174-0 Abusir el-Meleq, Middle Egypt 29.9 31.2 Egypt Abusir1668-Tooth Homo sapiens 2200 10.1038/ncomms15694 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB33848 ERS3635986,ERS3636003 Hodgkins2023 2023 10.1038/s41467-023-41174-0 Abusir el-Meleq, Middle Egypt 29.9 31.2 Egypt Abusir1671-Tooth Homo sapiens 2100 10.1038/ncomms15694 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB33848 ERS3636004 Hodgkins2023 2023 10.1038/s41467-023-41174-0 Abusir el-Meleq, Middle Egypt 29.9 31.2 Egypt Abusir1607-Tooth Homo sapiens 1900 10.1186/s12915-020-00839-8 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB33848 ERS3636032 Hodgkins2023 2023 10.1038/s41467-023-41174-0 Dacaozi site, Pingan county, Qinghai province 36.5 102.108 China Dacaozi-Tooth Homo sapiens 1900 10.1371/journal.pone.0060307 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB36297 ERS4255307 Hodgkins2023 2023 10.1038/s41467-023-41174-0 Riga 56.95 24.121 Latvia Riga_Cemetery-Tooth Homo sapiens 300 10.1038/s41598-020-71530-9 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB36413 ERS4266549 Hodgkins2023 2023 10.1038/s41467-023-41174-0 Chincha -13.476 -76.016 Peru Chincha-UC12-12-Tooth Homo sapiens 400 10.1073/pnas.2005965117 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB37726 ERS4421181 Hodgkins2023 2023 10.1038/s41467-023-41174-0 Chincha -13.476 -76.016 Peru Chincha-UC12-24-Tooth Homo sapiens 400 10.1073/pnas.2005965117 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB37726 ERS4421183 Hodgkins2023 2023 10.1038/s41467-023-41174-0 Chincha -13.477 -76.025 Peru Chincha-UC8-8168-Tooth Homo sapiens 300 10.1073/pnas.2005965117 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB37726 ERS4421185 Hodgkins2023 2023 10.1038/s41467-023-41174-0 Chiribaya Alta, Cemetery 1 -17.635 -71.293 Peru Chiribaya_Alta-Bone Homo sapiens 800 10.1038/nature13591 bacteria Clostridium tetani bone chromosome SRA raw PRJNA244165 SRS591994 Hodgkins2023 2023 10.1038/s41467-023-41174-0 El Yaral, Cemetery 2 -17.149 -70.924 Peru El_Yaral-Bone Homo sapiens 700 10.1038/nature13591 bacteria Clostridium tetani bone chromosome SRA raw PRJNA244165 SRS592075 Hodgkins2023 2023 10.1038/s41467-023-41174-0 Laguna de los Condores -6.848 -77.698 Peru Peru-NA40-Bone Homo sapiens 1100 10.1016/j.ajhg.2013.10.002 bacteria Clostridium tetani bone chromosome SRA raw PRJNA246597 SRS620293 Hodgkins2023 2023 10.1038/s41467-023-41174-0 Laguna de los Condores -6.848 -77.698 Peru Peru-NA42-Bone Homo sapiens 1100 10.1016/j.ajhg.2013.10.002 bacteria Clostridium tetani bone chromosome SRA raw PRJNA246597 SRS620295 Hodgkins2023 2023 10.1038/s41467-023-41174-0 Pueblo Bonito, New Mexico 36.06 -107.961 USA Pueblo_Bonito-Tooth Homo sapiens 900 10.1371/journal.pone.0060307 bacteria Clostridium tetani tooth chromosome SRA raw PRJNA353635 SRS1853899 Hodgkins2023 2023 10.1038/s41467-023-41174-0 Gniezno, Wielkopolska 52.54 17.59 Poland Gniezno-Tooth Homo sapiens 1000 10.1093/gigascience/gix044 bacteria Clostridium tetani tooth chromosome SRA raw PRJNA354503 SRS1815300 Hodgkins2023 2023 10.1038/s41467-023-41174-0 Punta Candelero 18.091 -65.789 Puerto Rico Punta_Candelero-Tooth Homo sapiens 1100 10.1093/molbev/msz267 bacteria Clostridium tetani tooth chromosome SRA raw PRJNA557308 SRS5212084 Majander2024 2024 10.1038/s41586-023-06965-x Jabuticabeira II (UTM 22 J) -28.588 -48.96 Brazil ZH1541 Homo sapiens 2000 10.1038/s41586-023-06965-x bacteria Treponema pallidum bone chromosome ENA raw PRJEB62647 ERS15463028 Majander2024 2024 10.1038/s41586-023-06965-x Jabuticabeira II (UTM 22 J) -28.588 -48.96 Brazil ZH1557 Homo sapiens 2000 10.1038/s41586-023-06965-x bacteria Treponema pallidum bone chromosome ENA raw PRJEB62647 ERS15463030 Majander2024 2024 10.1038/s41586-023-06965-x Jabuticabeira II (UTM 22 J) -28.588 -48.96 Brazil ZH1390 Homo sapiens 2300 10.1038/s41586-023-06965-x bacteria Treponema pallidum bone chromosome ENA raw PRJEB62647 ERS15463029 Majander2024 2024 10.1038/s41586-023-06965-x Jabuticabeira II (UTM 22 J) -28.588 -48.96 Brazil ZH1540 Homo sapiens 1800 10.1038/s41586-023-06965-x bacteria Treponema pallidum bone chromosome ENA raw PRJEB62647 ERS15463027 Rozwalak2024 2024 10.1038/s41467-023-44370-0 Cueva de los Muertos Chiquitos (Zape) 25.771 -105.786 Mexico Zape3 Homo sapiens 1300 10.1038/s41586-021-03532-0 virus Mushuvirus mushu palaeofaeces chromosome GenBank assembly PRJNA561510 BK063464 Jackson2024 2024 10.1093/molbev/msae017 Killuragh 52.6 -8.33 Ireland KGH2-F Homo sapiens 3800 10.1093/molbev/msae017 bacteria Tannerella forsythia tooth chromosome ENA raw,reference_aligned PRJEB64128 ERS15977755 Jackson2024 2024 10.1093/molbev/msae017 Killuragh 52.6 -8.33 Ireland KGH2-B Homo sapiens 3800 10.1093/molbev/msae017 bacteria Streptococcus mutans tooth chromosome ENA raw,reference_aligned PRJEB64128 ERS15977754 Jackson2024 2024 10.1093/molbev/msae017 Killuragh 52.6 -8.33 Ireland KGH1-E Homo sapiens 3800 10.1093/molbev/msae017 bacteria Tannerella forsythia tooth chromosome ENA raw,reference_aligned PRJEB64128 ERS15977753