{
 "cells": [
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "# Notebook to Set-up and Run Ariane for Mixing Paper"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 3,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "import os\n",
    "import RunAriane"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 4,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "def _make_namelist (minvalue, maxvalue, dir_name):\n",
    "    template_filename = 'namelist_template'\n",
    "    namelist_filename = 'namelist'\n",
    "    with open(os.path.join(dir_name, namelist_filename), 'wt') as namelist:\n",
    "        with open(os.path.join(dir_name, template_filename)) as template:\n",
    "            for line in template.readlines():\n",
    "                if line[2:6] == 'lmin':\n",
    "                    namelist.writelines('  lmin= {},\\n'.format(minvalue))\n",
    "                elif line[2:6] == 'lmax':\n",
    "                    namelist.writelines('  lmax= {},\\n'.format(maxvalue))\n",
    "                else:\n",
    "                    namelist.writelines(line)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 8,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "/ocean/sallen/allen/research/Meopar/Ariane/mixing_paper/base_jul/FluxesSouth\n",
      "Start 1\n",
      "End 1\n"
     ]
    }
   ],
   "source": [
    "dir_name = './'\n",
    "! pwd\n",
    "#for nday in range(args.numberofdays):\n",
    "for nday in range(1):\n",
    "    print ('Start', nday+1)\n",
    "    _make_namelist(nday+1, nday+2, dir_name)\n",
    "    RunAriane.run_ariane()\n",
    "    RunAriane.rename_results(nday=nday, labeltype='day')\n",
    "    print ('End', nday+1)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {
    "collapsed": true
   },
   "outputs": [],
   "source": [
    "if __name__ == '__main__':\n",
    "    parser = argparse.ArgumentParser()\n",
    "    parser.add_argument(\n",
    "        'numberofdays', help='Number of different dates to do', type=int)\n",
    "    args = parser.parse_args()\n",
    "    main(args)"
   ]
  }
 ],
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