#This config will demultiplex single end reads based on a radseq file, using ApeKI enzyme, then launch a QC
$order
1=processRadtags
2=fastqc

$processRadtags
-i fastq
-e 'apeKI'
--retain_header

#PUT YOUR OWN SCHEDULER CONFIGURATION HERE
#Example for SGE
#$sge
#-q YOURQUEUE.q
#-b Y