None Compositional Dietary Nutrition Ontology definition definition term replaced by term replaced by If R <- P o Q is a defining property chain axiom, then it also holds that R -> P o Q. Note that this cannot be expressed directly in OWL is a defining property chain axiom If R <- P o Q is a defining property chain axiom, then (1) R -> P o Q holds and (2) Q is either reflexive or locally reflexive. A corollary of this is that P SubPropertyOf R. is a defining property chain axiom where second argument is reflexive is part of my brain is part of my body (continuant parthood, two material entities) my stomach cavity is part of my stomach (continuant parthood, immaterial entity is part of material entity) this day is part of this year (occurrent parthood) a core relation that holds between a part and its whole Everything is part of itself. Any part of any part of a thing is itself part of that thing. Two distinct things cannot be part of each other. Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/ Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.) A continuant cannot be part of an occurrent: use 'participates in'. An occurrent cannot be part of a continuant: use 'has participant'. A material entity cannot be part of an immaterial entity: use 'has location'. A specifically dependent continuant cannot be part of an independent continuant: use 'inheres in'. An independent continuant cannot be part of a specifically dependent continuant: use 'bearer of'. part_of BFO:0000050 external quality uberon part_of part_of part of part of part_of http://www.obofoundry.org/ro/#OBO_REL:part_of has part my body has part my brain (continuant parthood, two material entities) my stomach has part my stomach cavity (continuant parthood, material entity has part immaterial entity) this year has part this day (occurrent parthood) a core relation that holds between a whole and its part Everything has itself as a part. Any part of any part of a thing is itself part of that thing. Two distinct things cannot have each other as a part. Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/ Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime Parthood requires the part and the whole to have compatible classes: only an occurrent have an occurrent as part; only a process can have a process as part; only a continuant can have a continuant as part; only an independent continuant can have an independent continuant as part; only a specifically dependent continuant can have a specifically dependent continuant as part; only a generically dependent continuant can have a generically dependent continuant as part. (This list is not exhaustive.) A continuant cannot have an occurrent as part: use 'participates in'. An occurrent cannot have a continuant as part: use 'has participant'. An immaterial entity cannot have a material entity as part: use 'location of'. An independent continuant cannot have a specifically dependent continuant as part: use 'bearer of'. A specifically dependent continuant cannot have an independent continuant as part: use 'inheres in'. has_part BFO:0000051 chebi_ontology external quality uberon has_part false has_part has part has part has_part preceded by x is preceded by y if and only if the time point at which y ends is before or equivalent to the time point at which x starts. Formally: x preceded by y iff ω(y) <= α(x), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point. An example is: translation preceded_by transcription; aging preceded_by development (not however death preceded_by aging). Where derives_from links classes of continuants, preceded_by links classes of processes. Clearly, however, these two relations are not independent of each other. Thus if cells of type C1 derive_from cells of type C, then any cell division involving an instance of C1 in a given lineage is preceded_by cellular processes involving an instance of C. The assertion P preceded_by P1 tells us something about Ps in general: that is, it tells us something about what happened earlier, given what we know about what happened later. Thus it does not provide information pointing in the opposite direction, concerning instances of P1 in general; that is, that each is such as to be succeeded by some instance of P. Note that an assertion to the effect that P preceded_by P1 is rather weak; it tells us little about the relations between the underlying instances in virtue of which the preceded_by relation obtains. Typically we will be interested in stronger relations, for example in the relation immediately_preceded_by, or in relations which combine preceded_by with a condition to the effect that the corresponding instances of P and P1 share participants, or that their participants are connected by relations of derivation, or (as a first step along the road to a treatment of causality) that the one process in some way affects (for example, initiates or regulates) the other. is preceded by preceded_by http://www.obofoundry.org/ro/#OBO_REL:preceded_by BFO:0000062 external uberon preceded_by preceded_by preceded by preceded by precedes x precedes y if and only if the time point at which x ends is before or equivalent to the time point at which y starts. Formally: x precedes y iff ω(x) <= α(y), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point. BFO:0000063 external uberon precedes precedes precedes precedes occurs in b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t occurs_in unfolds in unfolds_in Paraphrase of definition: a relation between a process and an independent continuant, in which the process takes place entirely within the independent continuant occurs in site of [copied from inverse property 'occurs in'] b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t Paraphrase of definition: a relation between an independent continuant and a process, in which the process takes place entirely within the independent continuant contains process A duck swimming in a pond is partially surrounded by air and partially surrounded by water. x partially_surrounded_by y if and only if (1) x is adjacent to y and for the region r that is adjacent to x, r partially overlaps y (2) the shared boundary between x and y occupies a non-trivial proportion of the outermost boundary of x Definition modified from 'surrounded by'. partially_surrounded_by inheres in this fragility inheres in this vase this fragility is a characteristic of this vase this red color inheres in this apple this red color is a characteristic of this apple a relation between a specifically dependent continuant (the characteristic) and any other entity (the bearer), in which the characteristic depends on the bearer for its existence. a relation between a specifically dependent continuant (the dependent) and an independent continuant (the bearer), in which the dependent specifically depends on the bearer for its existence A dependent inheres in its bearer at all times for which the dependent exists. inheres_in Note that this relation was previously called "inheres in", but was changed to be called "characteristic of" because BFO2 uses "inheres in" in a more restricted fashion. This relation differs from BFO2:inheres_in in two respects: (1) it does not impose a range constraint, and thus it allows qualities of processes, as well as of information entities, whereas BFO2 restricts inheres_in to only apply to independent continuants (2) it is declared functional, i.e. something can only be a characteristic of one thing. characteristic of inheres in bearer of this apple is bearer of this red color this vase is bearer of this fragility Inverse of characteristic_of a relation between an independent continuant (the bearer) and a specifically dependent continuant (the dependent), in which the dependent specifically depends on the bearer for its existence A bearer can have many dependents, and its dependents can exist for different periods of time, but none of its dependents can exist when the bearer does not exist. bearer_of is bearer of RO:0000053 external bearer_of bearer_of bearer of bearer of has characteristic participates in this blood clot participates in this blood coagulation this input material (or this output material) participates in this process this investigator participates in this investigation a relation between a continuant and a process, in which the continuant is somehow involved in the process participates_in RO:0000056 external uberon participates_in participates_in participates in participates in has participant this blood coagulation has participant this blood clot this investigation has participant this investigator this process has participant this input material (or this output material) a relation between a process and a continuant, in which the continuant is somehow involved in the process Has_participant is a primitive instance-level relation between a process, a continuant, and a time at which the continuant participates in some way in the process. The relation obtains, for example, when this particular process of oxygen exchange across this particular alveolar membrane has_participant this particular sample of hemoglobin at this particular time. has_participant http://www.obofoundry.org/ro/#OBO_REL:has_participant RO:0000057 external has_participant has_participant has participant has participant this catalysis function is a function of this enzyme a relation between a function and an independent continuant (the bearer), in which the function specifically depends on the bearer for its existence A function inheres in its bearer at all times for which the function exists, however the function need not be realized at all the times that the function exists. function_of is function of This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020. function of this red color is a quality of this apple a relation between a quality and an independent continuant (the bearer), in which the quality specifically depends on the bearer for its existence A quality inheres in its bearer at all times for which the quality exists. is quality of quality_of This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020. quality of this investigator role is a role of this person a relation between a role and an independent continuant (the bearer), in which the role specifically depends on the bearer for its existence A role inheres in its bearer at all times for which the role exists, however the role need not be realized at all the times that the role exists. is role of role_of This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020. role of this enzyme has function this catalysis function (more colloquially: this enzyme has this catalysis function) a relation between an independent continuant (the bearer) and a function, in which the function specifically depends on the bearer for its existence A bearer can have many functions, and its functions can exist for different periods of time, but none of its functions can exist when the bearer does not exist. A function need not be realized at all the times that the function exists. has_function has function this apple has quality this red color a relation between an independent continuant (the bearer) and a quality, in which the quality specifically depends on the bearer for its existence A bearer can have many qualities, and its qualities can exist for different periods of time, but none of its qualities can exist when the bearer does not exist. has_quality RO:0000086 uberon has_quality has_quality has quality has quality this person has role this investigator role (more colloquially: this person has this role of investigator) a relation between an independent continuant (the bearer) and a role, in which the role specifically depends on the bearer for its existence A bearer can have many roles, and its roles can exist for different periods of time, but none of its roles can exist when the bearer does not exist. A role need not be realized at all the times that the role exists. has_role RO:0000087 chebi_ontology has_role false false has_role has role has role a relation between an independent continuant (the bearer) and a disposition, in which the disposition specifically depends on the bearer for its existence has disposition inverse of has disposition This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020. disposition of this cell derives from this parent cell (cell division) this nucleus derives from this parent nucleus (nuclear division) a relation between two distinct material entities, the new entity and the old entity, in which the new entity begins to exist when the old entity ceases to exist, and the new entity inherits the significant portion of the matter of the old entity This is a very general relation. More specific relations are preferred when applicable, such as 'directly develops from'. derives_from This relation is taken from the RO2005 version of RO. It may be obsoleted and replaced by relations with different definitions. See also the 'develops from' family of relations. derives from located in my brain is located in my head this rat is located in this cage a relation between two independent continuants, the target and the location, in which the target is entirely within the location Location as a relation between instances: The primitive instance-level relation c located_in r at t reflects the fact that each continuant is at any given time associated with exactly one spatial region, namely its exact location. Following we can use this relation to define a further instance-level location relation - not between a continuant and the region which it exactly occupies, but rather between one continuant and another. c is located in c1, in this sense, whenever the spatial region occupied by c is part_of the spatial region occupied by c1. Note that this relation comprehends both the relation of exact location between one continuant and another which obtains when r and r1 are identical (for example, when a portion of fluid exactly fills a cavity), as well as those sorts of inexact location relations which obtain, for example, between brain and head or between ovum and uterus Most location relations will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime located_in http://www.obofoundry.org/ro/#OBO_REL:located_in located in X outer_layer_of Y iff: . X :continuant that bearer_of some PATO:laminar . X part_of Y . exists Z :surface . X has_boundary Z . Z boundary_of Y has_boundary: http://purl.obolibrary.org/obo/RO_0002002 boundary_of: http://purl.obolibrary.org/obo/RO_0002000 David Osumi-Sutherland A relationship that applies between a continuant and its outer, bounding layer. Examples include the relationship between a multicellular organism and its integument, between an animal cell and its plasma membrane, and between a membrane bound organelle and its outer/bounding membrane. bounding layer of A 'has regulatory component activity' B if A and B are GO molecular functions (GO_0003674), A has_component B and A is regulated by B. dos 2017-05-24T09:30:46Z RO:0002013 external has_regulatory_component_activity has_regulatory_component_activity has regulatory component activity A relationship that holds between a GO molecular function and a component of that molecular function that negatively regulates the activity of the whole. More formally, A 'has regulatory component activity' B iff :A and B are GO molecular functions (GO_0003674), A has_component B and A is negatively regulated by B. dos 2017-05-24T09:31:01Z RO:0002014 external has_negative_regulatory_component_activity has_negative_regulatory_component_activity By convention GO molecular functions are classified by their effector function. Internal regulatory functions are treated as components. For example, NMDA glutmate receptor activity is a cation channel activity with positive regulatory component 'glutamate binding' and negative regulatory components including 'zinc binding' and 'magnesium binding'. has negative regulatory component activity A relationship that holds between a GO molecular function and a component of that molecular function that positively regulates the activity of the whole. More formally, A 'has regulatory component activity' B iff :A and B are GO molecular functions (GO_0003674), A has_component B and A is positively regulated by B. dos 2017-05-24T09:31:17Z By convention GO molecular functions are classified by their effector function and internal regulatory functions are treated as components. So, for example calmodulin has a protein binding activity that has positive regulatory component activity calcium binding activity. Receptor tyrosine kinase activity is a tyrosine kinase activity that has positive regulatory component 'ligand binding'. has positive regulatory component activity dos 2017-05-24T09:44:33Z A 'has component activity' B if A is A and B are molecular functions (GO_0003674) and A has_component B. has component activity w 'has process component' p if p and w are processes, w 'has part' p and w is such that it can be directly disassembled into into n parts p, p2, p3, ..., pn, where these parts are of similar type. dos 2017-05-24T09:49:21Z has component process dos 2017-09-17T13:52:24Z Process(P2) is directly regulated by process(P1) iff: P1 regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding regulates the kinase activity (P2) of protein B then P1 directly regulates P2. directly regulated by Process(P2) is directly regulated by process(P1) iff: P1 regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding regulates the kinase activity (P2) of protein B then P1 directly regulates P2. GOC:dos Process(P2) is directly negatively regulated by process(P1) iff: P1 negatively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding negatively regulates the kinase activity (P2) of protein B then P2 directly negatively regulated by P1. dos 2017-09-17T13:52:38Z directly negatively regulated by Process(P2) is directly negatively regulated by process(P1) iff: P1 negatively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding negatively regulates the kinase activity (P2) of protein B then P2 directly negatively regulated by P1. GOC:dos Process(P2) is directly postively regulated by process(P1) iff: P1 positively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding positively regulates the kinase activity (P2) of protein B then P2 is directly postively regulated by P1. dos 2017-09-17T13:52:47Z directly positively regulated by Process(P2) is directly postively regulated by process(P1) iff: P1 positively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding positively regulates the kinase activity (P2) of protein B then P2 is directly postively regulated by P1. GOC:dos A 'has effector activity' B if A and B are GO molecular functions (GO_0003674), A 'has component activity' B and B is the effector (output function) of B. Each compound function has only one effector activity. dos 2017-09-22T14:14:36Z This relation is designed for constructing compound molecular functions, typically in combination with one or more regulatory component activity relations. has effector activity A 'has effector activity' B if A and B are GO molecular functions (GO_0003674), A 'has component activity' B and B is the effector (output function) of B. Each compound function has only one effector activity. GOC:dos David Osumi-Sutherland Previously had ID http://purl.obolibrary.org/obo/RO_0002122 in test files in sandpit - but this seems to have been dropped from ro-edit.owl at some point. No re-use under this ID AFAIK, but leaving note here in case we run in to clashes down the line. Official ID now chosen from DOS ID range. during which ends David Osumi-Sutherland X ends_after Y iff: end(Y) before_or_simultaneous_with end(X) ends after David Osumi-Sutherland starts_at_end_of RO:0002087 external uberon immediately_preceded_by immediately_preceded_by X immediately_preceded_by Y iff: end(X) simultaneous_with start(Y) immediately preceded by immediately preceded by David Osumi-Sutherland ends_at_start_of meets RO:0002090 external immediately_precedes immediately_precedes X immediately_precedes_Y iff: end(X) simultaneous_with start(Y) immediately precedes immediately precedes x overlaps y if and only if there exists some z such that x has part z and z part of y http://purl.obolibrary.org/obo/BFO_0000051 some (http://purl.obolibrary.org/obo/BFO_0000050 some ?Y) RO:0002131 external uberon overlaps overlaps overlaps overlaps true lactation SubClassOf 'only in taxon' some 'Mammalia' x only in taxon y if and only if x is in taxon y, and there is no other organism z such that y!=z a and x is in taxon z. The original intent was to treat this as a macro that expands to 'in taxon' only ?Y - however, this is not necessary if we instead have supplemental axioms that state that each pair of sibling tax have a disjointness axiom using the 'in taxon' property - e.g. 'in taxon' some Eukaryota DisjointWith 'in taxon' some Eubacteria Chris Mungall RO:0002160 uberon only_in_taxon only_in_taxon only in taxon x is in taxon y if an only if y is an organism, and the relationship between x and y is one of: part of (reflexive), developmentally preceded by, derives from, secreted by, expressed. Chris Mungall Jennifer Deegan RO:0002162 uberon in_taxon in_taxon Connects a biological entity to its taxon of origin. in taxon A is spatially_disjoint_from B if and only if they have no parts in common There are two ways to encode this as a shortcut relation. The other possibility to use an annotation assertion between two classes, and expand this to a disjointness axiom. Chris Mungall Note that it would be possible to use the relation to label the relationship between a near infinite number of structures - between the rings of saturn and my left earlobe. The intent is that this is used for parsiomoniously for disambiguation purposes - for example, between siblings in a jointly exhaustive pairwise disjointness hierarchy BFO_0000051 exactly 0 (BFO_0000050 some ?Y) spatially disjoint from https://github.com/obophenotype/uberon/wiki/Part-disjointness-Design-Pattern w 'has component' p if w 'has part' p and w is such that it can be directly disassembled into into n parts p, p2, p3, ..., pn, where these parts are of similar type. The definition of 'has component' is still under discussion. The challenge is in providing a definition that does not imply transitivity. For use in recording has_part with a cardinality constraint, because OWL does not permit cardinality constraints to be used in combination with transitive object properties. In situations where you would want to say something like 'has part exactly 5 digit, you would instead use has_component exactly 5 digit. RO:0002180 external uberon has_component has_component has component has component x develops from y if and only if either (a) x directly develops from y or (b) there exists some z such that x directly develops from z and z develops from y Chris Mungall David Osumi-Sutherland Melissa Haendel Terry Meehan This is the transitive form of the develops from relation develops from inverse of develops from Chris Mungall David Osumi-Sutherland Terry Meehan develops into p regulates q iff p is causally upstream of q, the execution of p is not constant and varies according to specific conditions, and p influences the rate or magnitude of execution of q due to an effect either on some enabler of q or some enabler of a part of q. Chris Mungall David Hill Tanya Berardini GO Regulation precludes parthood; the regulatory process may not be within the regulated process. regulates (processual) false RO:0002211 external regulates regulates regulates regulates p negatively regulates q iff p regulates q, and p decreases the rate or magnitude of execution of q. Chris Mungall negatively regulates (process to process) RO:0002212 external negatively_regulates negatively_regulates negatively regulates negatively regulates p positively regulates q iff p regulates q, and p increases the rate or magnitude of execution of q. Chris Mungall positively regulates (process to process) RO:0002213 external positively_regulates positively_regulates positively regulates positively regulates mechanosensory neuron capable of detection of mechanical stimulus involved in sensory perception (GO:0050974) osteoclast SubClassOf 'capable of' some 'bone resorption' A relation between a material entity (such as a cell) and a process, in which the material entity has the ability to carry out the process. Chris Mungall has function realized in For compatibility with BFO, this relation has a shortcut definition in which the expression "capable of some P" expands to "bearer_of (some realized_by only P)". RO:0002215 external uberon capable_of capable_of capable of capable of c stands in this relationship to p if and only if there exists some p' such that c is capable_of p', and p' is part_of p. Chris Mungall has function in RO:0002216 external uberon capable_of_part_of capable_of_part_of capable of part of capable of part of true x surrounded_by y if and only if (1) x is adjacent to y and for every region r that is adjacent to x, r overlaps y (2) the shared boundary between x and y occupies the majority of the outermost boundary of x Chris Mungall surrounded by surrounded by A caterpillar walking on the surface of a leaf is adjacent_to the leaf, if one of the caterpillar appendages is touching the leaf. In contrast, a butterfly flying close to a flower is not considered adjacent, unless there are any touching parts. The epidermis layer of a vertebrate is adjacent to the dermis. The plasma membrane of a cell is adjacent to the cytoplasm, and also to the cell lumen which the cytoplasm occupies. The skin of the forelimb is adjacent to the skin of the torso if these are considered anatomical subdivisions with a defined border. Otherwise a relation such as continuous_with would be used. x adjacent to y if and only if x and y share a boundary. This relation acts as a join point with BSPO Chris Mungall adjacent to A caterpillar walking on the surface of a leaf is adjacent_to the leaf, if one of the caterpillar appendages is touching the leaf. In contrast, a butterfly flying close to a flower is not considered adjacent, unless there are any touching parts. Chris Mungall Do not use this relation directly. It is ended as a grouping for relations between occurrents involving the relative timing of their starts and ends. https://docs.google.com/document/d/1kBv1ep_9g3sTR-SD3jqzFqhuwo9TPNF-l-9fUDbO6rM/edit?pli=1 A relation that holds between two occurrents. This is a grouping relation that collects together all the Allen relations. temporally related to inverse of starts with Chris Mungall Allen RO:0002223 uberon starts starts starts starts Every insulin receptor signaling pathway starts with the binding of a ligand to the insulin receptor x starts with y if and only if x has part y and the time point at which x starts is equivalent to the time point at which y starts. Formally: α(y) = α(x) ∧ ω(y) < ω(x), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point. Chris Mungall started by RO:0002224 external uberon starts_with starts_with starts with starts with inverse of ends with Chris Mungall RO:0002229 uberon ends ends ends ends x ends with y if and only if x has part y and the time point at which x ends is equivalent to the time point at which y ends. Formally: α(y) > α(x) ∧ ω(y) = ω(x), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point. Chris Mungall finished by RO:0002230 external uberon ends_with ends_with ends with ends with p has input c iff: p is a process, c is a material entity, c is a participant in p, c is present at the start of p, and the state of c is modified during p. Chris Mungall consumes RO:0002233 external has_input has_input has input has input p has output c iff c is a participant in p, c is present at the end of p, and c is not present at the beginning of p. p has output c iff c is a participant in p, c is present at the end of p, and c is not present in the same state at the beginning of p. Chris Mungall produces RO:0002234 external has_output has_output has output has output Mammalian thymus has developmental contribution from some pharyngeal pouch 3; Mammalian thymus has developmental contribution from some pharyngeal pouch 4 [Kardong] x has developmental contribution from y iff x has some part z such that z develops from y Chris Mungall has developmental contribution from inverse of has developmental contribution from Chris Mungall developmentally contributes to Candidate definition: x developmentally related to y if and only if there exists some developmental process (GO:0032502) p such that x and y both participates in p, and x is the output of p and y is the input of p false Chris Mungall In general you should not use this relation to make assertions - use one of the more specific relations below this one This relation groups together various other developmental relations. It is fairly generic, encompassing induction, developmental contribution and direct and transitive develops from developmentally preceded by A faulty traffic light (material entity) whose malfunctioning (a process) is causally upstream of a traffic collision (a process): the traffic light acts upstream of the collision. c acts upstream of p if and only if c enables some f that is involved in p' and p' occurs chronologically before p, is not part of p, and affects the execution of p. c is a material entity and f, p, p' are processes. acts upstream of A gene product that has some activity, where that activity may be a part of a pathway or upstream of the pathway. c acts upstream of or within p if c is enables f, and f is causally upstream of or within p. c is a material entity and p is an process. affects acts upstream of or within Inverse of developmentally preceded by Chris Mungall developmentally succeeded by p results in the developmental progression of s iff p is a developmental process and s is an anatomical structure and p causes s to undergo a change in state at some point along its natural developmental cycle (this cycle starts with its formation, through the mature structure, and ends with its loss). This property and its subproperties are being used primarily for the definition of GO developmental processes. The property hierarchy mirrors the core GO hierarchy. In future we may be able to make do with a more minimal set of properties, but due to the way GO is currently structured we require highly specific relations to avoid incorrect entailments. To avoid this, the corresponding genus terms in GO should be declared mutually disjoint. Chris Mungall RO:0002295 external results_in_developmental_progression_of results_in_developmental_progression_of results in developmental progression of results in developmental progression of an annotation of gene X to anatomical structure formation with results_in_formation_of UBERON:0000007 (pituitary gland) means that at the beginning of the process a pituitary gland does not exist and at the end of the process a pituitary gland exists. every "endocardial cushion formation" (GO:0003272) results_in_formation_of some "endocardial cushion" (UBERON:0002062) Chris Mungall GOC:mtg_berkeley_2013 RO:0002297 external results_in_formation_of results_in_formation_of results in formation of results in formation of Hydrozoa (NCBITaxon_6074) SubClassOf 'has habitat' some 'Hydrozoa habitat' where 'Hydrozoa habitat' SubClassOf overlaps some ('marine environment' (ENVO_00000569) and 'freshwater environment' (ENVO_01000306) and 'wetland' (ENVO_00000043)) and 'has part' some (freshwater (ENVO_00002011) or 'sea water' (ENVO_00002149)) -- http://eol.org/pages/1795/overview x 'has habitat' y if and only if: x is an organism, y is a habitat, and y can sustain and allow the growth of a population of xs. Pier Buttigieg adapted for living in A population of xs will possess adaptations (either evolved naturally or via artifical selection) which permit it to exist and grow in y. has habitat has habitat p is causally upstream of, positive effect q iff p is casually upstream of q, and the execution of p is required for the execution of q. cjm RO:0002304 external causally_upstream_of,_positive_effect causally_upstream_of,_positive_effect holds between x and y if and only if x is causally upstream of y and the progression of x increases the frequency, rate or extent of y causally upstream of, positive effect p is causally upstream of, negative effect q iff p is casually upstream of q, and the execution of p decreases the execution of q. cjm RO:0002305 external causally_upstream_of,_negative_effect causally_upstream_of,_negative_effect causally upstream of, negative effect q characteristic of part of w if and only if there exists some p such that q inheres in p and p part of w. q inheres in part of w if and only if there exists some p such that q inheres in p and p part of w. Because part_of is transitive, inheres in is a sub-relation of characteristic of part of Because part_of is transitive, inheres in is a sub-relation of inheres in part of Chris Mungall inheres in part of characteristic of part of inheres in part of true A relationship that holds via some environmental process Chris Mungall Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving the process of evolution. evolutionarily related to A relationship that is mediated in some way by the environment or environmental feature (ENVO:00002297) Awaiting class for domain/range constraint, see: https://github.com/OBOFoundry/Experimental-OBO-Core/issues/6 Chris Mungall Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving ecological interactions ecologically related to A mereological relationship or a topological relationship Chris Mungall Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving parthood or connectivity relationships mereotopologically related to A relationship that holds between entities participating in some developmental process (GO:0032502) Chris Mungall Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving organismal development developmentally related to a particular instances of akt-2 enables some instance of protein kinase activity c enables p iff c is capable of p and c acts to execute p. Chris Mungall catalyzes executes has is catalyzing is executing This relation differs from the parent relation 'capable of' in that the parent is weaker and only expresses a capability that may not be actually realized, whereas this relation is always realized. enables A grouping relationship for any relationship directly involving a function, or that holds because of a function of one of the related entities. Chris Mungall This is a grouping relation that collects relations used for the purpose of connecting structure and function RO:0002328 uberon functionally_related_to functionally_related_to functionally related to functionally related to this relation holds between c and p when c is part of some c', and c' is capable of p. Chris Mungall false part of structure that is capable of true c involved_in p if and only if c enables some process p', and p' is part of p Chris Mungall actively involved in enables part of involved in inverse of enables Chris Mungall enabled by inverse of regulates Chris Mungall regulated by (processual) RO:0002334 external regulated_by regulated_by regulated by regulated by inverse of negatively regulates Chris Mungall RO:0002335 external negatively_regulated_by negatively_regulated_by negatively regulated by negatively regulated by inverse of positively regulates Chris Mungall RO:0002336 external positively_regulated_by positively_regulated_by positively regulated by positively regulated by has member is a mereological relation between a collection and an item. SIO has member inverse of has input Chris Mungall RO:0002352 uberon input_of input_of input of input of inverse of has output Chris Mungall RO:0002353 external uberon output_of output_of output of output of Chris Mungall formed as result of x has developmental potential involving y iff x is capable of a developmental process with output y. y may be the successor of x, or may be a different structure in the vicinity (as for example in the case of developmental induction). Chris Mungall has developmental potential involving x has potential to developmentrally contribute to y iff x developmentally contributes to y or x is capable of developmentally contributing to y Chris Mungall has potential to developmentally contribute to x has the potential to develop into y iff x develops into y or if x is capable of developing into y Chris Mungall has potential to develop into x has potential to directly develop into y iff x directly develops into y or x is capable of directly developing into y Chris Mungall has potential to directly develop into inverse of upstream of Chris Mungall RO:0002404 external causally_downstream_of causally_downstream_of causally downstream of causally downstream of Chris Mungall RO:0002405 external immediately_causally_downstream_of immediately_causally_downstream_of immediately causally downstream of immediately causally downstream of p indirectly positively regulates q iff p is indirectly causally upstream of q and p positively regulates q. Chris Mungall indirectly activates indirectly positively regulates p indirectly negatively regulates q iff p is indirectly causally upstream of q and p negatively regulates q. Chris Mungall indirectly inhibits indirectly negatively regulates This relation groups causal relations between material entities and causal relations between processes relation that links two events, processes, states, or objects such that one event, process, state, or object (a cause) contributes to the production of another event, process, state, or object (an effect) where the cause is partly or wholly responsible for the effect, and the effect is partly or wholly dependent on the cause. This branch of the ontology deals with causal relations between entities. It is divided into two branches: causal relations between occurrents/processes, and causal relations between material entities. We take an 'activity flow-centric approach', with the former as primary, and define causal relations between material entities in terms of causal relations between occurrents. To define causal relations in an activity-flow type network, we make use of 3 primitives: * Temporal: how do the intervals of the two occurrents relate? * Is the causal relation regulatory? * Is the influence positive or negative The first of these can be formalized in terms of the Allen Interval Algebra. Informally, the 3 bins we care about are 'direct', 'indirect' or overlapping. Note that all causal relations should be classified under a RO temporal relation (see the branch under 'temporally related to'). Note that all causal relations are temporal, but not all temporal relations are causal. Two occurrents can be related in time without being causally connected. We take causal influence to be primitive, elucidated as being such that has the upstream changed, some qualities of the donwstream would necessarily be modified. For the second, we consider a relationship to be regulatory if the system in which the activities occur is capable of altering the relationship to achieve some objective. This could include changing the rate of production of a molecule. For the third, we consider the effect of the upstream process on the output(s) of the downstream process. If the level of output is increased, or the rate of production of the output is increased, then the direction is increased. Direction can be positive, negative or neutral or capable of either direction. Two positives in succession yield a positive, two negatives in succession yield a positive, otherwise the default assumption is that the net effect is canceled and the influence is neutral. Each of these 3 primitives can be composed to yield a cross-product of different relation types. This branch of the ontology deals with causal relations between entities. It is divided into two branches: causal relations between occurrents/processes, and causal relations between material entities. We take an 'activity flow-centric approach', with the former as primary, and define causal relations between material entities in terms of causal relations between occurrents. To define causal relations in an activity-flow type network, we make use of 3 primitives: * Temporal: how do the intervals of the two occurrents relate? * Is the causal relation regulatory? * Is the influence positive or negative? The first of these can be formalized in terms of the Allen Interval Algebra. Informally, the 3 bins we care about are 'direct', 'indirect' or overlapping. Note that all causal relations should be classified under a RO temporal relation (see the branch under 'temporally related to'). Note that all causal relations are temporal, but not all temporal relations are causal. Two occurrents can be related in time without being causally connected. We take causal influence to be primitive, elucidated as being such that has the upstream changed, some qualities of the donwstream would necessarily be modified. For the second, we consider a relationship to be regulatory if the system in which the activities occur is capable of altering the relationship to achieve some objective. This could include changing the rate of production of a molecule. For the third, we consider the effect of the upstream process on the output(s) of the downstream process. If the level of output is increased, or the rate of production of the output is increased, then the direction is increased. Direction can be positive, negative or neutral or capable of either direction. Two positives in succession yield a positive, two negatives in succession yield a positive, otherwise the default assumption is that the net effect is canceled and the influence is neutral. Each of these 3 primitives can be composed to yield a cross-product of different relation types. Chris Mungall Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect. causally related to relation that links two events, processes, states, or objects such that one event, process, state, or object (a cause) contributes to the production of another event, process, state, or object (an effect) where the cause is partly or wholly responsible for the effect, and the effect is partly or wholly dependent on the cause. https://en.wikipedia.org/wiki/Causality p is causally upstream of q iff p is causally related to q, the end of p precedes the end of q, and p is not an occurrent part of q. Chris Mungall RO:0002411 external causally_upstream_of causally_upstream_of causally upstream of causally upstream of p is immediately causally upstream of q iff p is causally upstream of q, and the end of p is coincident with the beginning of q. Chris Mungall RO:0002412 external immediately_causally_upstream_of immediately_causally_upstream_of immediately causally upstream of immediately causally upstream of p is 'causally upstream or within' q iff p is causally related to q, and the end of p precedes, or is coincident with, the end of q. We would like to make this disjoint with 'preceded by', but this is prohibited in OWL2 Chris Mungall influences (processual) RO:0002418 external affects causally_upstream_of_or_within causally_upstream_of_or_within causally upstream of or within inverse of causally upstream of or within Chris Mungall RO:0002427 external causally_downstream_of_or_within causally_downstream_of_or_within causally downstream of or within c involved in regulation of p if c is involved in some p' and p' regulates some p Chris Mungall involved in regulation of c involved in regulation of p if c is involved in some p' and p' positively regulates some p Chris Mungall involved in positive regulation of c involved in regulation of p if c is involved in some p' and p' negatively regulates some p Chris Mungall involved in negative regulation of c involved in or regulates p if and only if either (i) c is involved in p or (ii) c is involved in regulation of p OWL does not allow defining object properties via a Union Chris Mungall involved in or reguates involved in or involved in regulation of A relationship that holds between two entities in which the processes executed by the two entities are causally connected. Considering relabeling as 'pairwise interacts with' This relation and all sub-relations can be applied to either (1) pairs of entities that are interacting at any moment of time (2) populations or species of entity whose members have the disposition to interact (3) classes whose members have the disposition to interact. Chris Mungall Note that this relationship type, and sub-relationship types may be redundant with process terms from other ontologies. For example, the symbiotic relationship hierarchy parallels GO. The relations are provided as a convenient shortcut. Consider using the more expressive processual form to capture your data. In the future, these relations will be linked to their cognate processes through rules. in pairwise interaction with interacts with http://purl.obolibrary.org/obo/ro/docs/interaction-relations/ http://purl.obolibrary.org/obo/MI_0914 An interaction relationship in which the two partners are molecular entities that directly physically interact with each other for example via a stable binding interaction or a brief interaction during which one modifies the other. Chris Mungall binds molecularly binds with molecularly interacts with http://purl.obolibrary.org/obo/MI_0915 Axiomatization to GO to be added later Chris Mungall An interaction relation between x and y in which x catalyzes a reaction in which a phosphate group is added to y. phosphorylates The entity A, immediately upstream of the entity B, has an activity that regulates an activity performed by B. For example, A and B may be gene products and binding of B by A regulates the kinase activity of B. A and B can be physically interacting but not necessarily. Immediately upstream means there are no intermediate entity between A and B. Chris Mungall Vasundra Touré molecularly controls directly regulates activity of The entity A, immediately upstream of the entity B, has an activity that negatively regulates an activity performed by B. For example, A and B may be gene products and binding of B by A negatively regulates the kinase activity of B. Chris Mungall Vasundra Touré directly inhibits molecularly decreases activity of directly negatively regulates activity of The entity A, immediately upstream of the entity B, has an activity that positively regulates an activity performed by B. For example, A and B may be gene products and binding of B by A positively regulates the kinase activity of B. Chris Mungall Vasundra Touré directly activates molecularly increases activity of directly positively regulates activity of Chris Mungall This property or its subproperties is not to be used directly. These properties exist as helper properties that are used to support OWL reasoning. helper property (not for use in curation) 'otolith organ' SubClassOf 'composed primarily of' some 'calcium carbonate' x composed_primarily_of y if and only if more than half of the mass of x is made from y or units of the same type as y. Chris Mungall composed primarily of Chris Mungall is kinase activity A relationship between a material entity and a process where the material entity has some causal role that influences the process causal agent in process p is causally related to q if and only if p or any part of p and q or any part of q are linked by a chain of events where each event pair is one where the execution of p influences the execution of q. p may be upstream, downstream, part of, or a container of q. Chris Mungall Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect. causal relation between processes Chris Mungall depends on The intent is that the process branch of the causal property hierarchy is primary (causal relations hold between occurrents/processes), and that the material branch is defined in terms of the process branch Chris Mungall Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect. causal relation between entities A coral reef environment is determined by a particular coral reef s determined by f if and only if s is a type of system, and f is a material entity that is part of s, such that f exerts a strong causal influence on the functioning of s, and the removal of f would cause the collapse of s. The label for this relation is probably too general for its restricted use, where the domain is a system. It may be relabeled in future Chris Mungall determined by (system to material entity) Chris Mungall Pier Buttigieg determined by s 'determined by part of' w if and only if there exists some f such that (1) s 'determined by' f and (2) f part_of w, or f=w. Chris Mungall determined by part of Chris Mungall causally influenced by (entity-centric) causally influenced by Chris Mungall interaction relation helper property http://purl.obolibrary.org/obo/ro/docs/interaction-relations/ Chris Mungall molecular interaction relation helper property The entity or characteristic A is causally upstream of the entity or characteristic B, A having an effect on B. An entity corresponds to any biological type of entity as long as a mass is measurable. A characteristic corresponds to a particular specificity of an entity (e.g., phenotype, shape, size). Chris Mungall Vasundra Touré causally influences (entity-centric) causally influences p directly regulates q iff p is immediately causally upstream of q and p regulates q. Chris Mungall directly regulates (processual) directly regulates gland SubClassOf 'has part structure that is capable of' some 'secretion by cell' s 'has part structure that is capable of' p if and only if there exists some part x such that s 'has part' x and x 'capable of' p Chris Mungall has part structure that is capable of p results in breakdown of c if and only if the execution of p leads to c no longer being present at the end of p results in breakdown of RO:0002588 external results_in_assembly_of results_in_assembly_of results in assembly of RO:0002590 external results_in_disassembly_of results_in_disassembly_of results in disassembly of p results in organization of c iff p results in the assembly, arrangement of constituent parts, or disassembly of c RO:0002592 external results_in_organization_of results_in_organization_of results in organization of A relationship that holds between a material entity and a process in which causality is involved, with either the material entity or some part of the material entity exerting some influence over the process, or the process influencing some aspect of the material entity. Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect. Chris Mungall causal relation between material entity and a process pyrethroid -> growth Holds between c and p if and only if c is capable of some activity a, and a regulates p. capable of regulating Holds between c and p if and only if c is capable of some activity a, and a negatively regulates p. capable of negatively regulating renin -> arteriolar smooth muscle contraction Holds between c and p if and only if c is capable of some activity a, and a positively regulates p. capable of positively regulating Inverse of 'causal agent in process' RO:0002608 external process_has_causal_agent process_has_causal_agent process has causal agent p directly positively regulates q iff p is immediately causally upstream of q, and p positively regulates q. directly positively regulates (process to process) directly positively regulates p directly negatively regulates q iff p is immediately causally upstream of q, and p negatively regulates q. directly negatively regulates (process to process) directly negatively regulates p 'has primary input ot output' c iff either (a) p 'has primary input' c or (b) p 'has primary output' c. cjm 2018-12-13T11:26:17Z RO:0004007 external has_primary_input_or_output has_primary_input_or_output has primary input or output p has primary output c if (a) p has output c and (b) the goal of process is to modify, produce, or transform c. cjm 2018-12-13T11:26:32Z RO:0004008 external has_primary_output has_primary_output has primary output p has primary output c if (a) p has output c and (b) the goal of process is to modify, produce, or transform c. GOC:cjm GOC:dph GOC:kva GOC:pt PMID:27812932 Holds between an entity and an process P where the entity enables some larger compound process, and that larger process has-part P. cjm 2018-01-25T23:20:13Z enables subfunction cjm 2018-01-26T23:49:30Z acts upstream of or within, positive effect cjm 2018-01-26T23:49:51Z acts upstream of or within, negative effect c 'acts upstream of, positive effect' p if c is enables f, and f is causally upstream of p, and the direction of f is positive cjm 2018-01-26T23:53:14Z acts upstream of, positive effect c 'acts upstream of, negative effect' p if c is enables f, and f is causally upstream of p, and the direction of f is negative cjm 2018-01-26T23:53:22Z acts upstream of, negative effect cjm 2018-03-13T23:55:05Z causally upstream of or within, negative effect cjm 2018-03-13T23:55:19Z causally upstream of or within, positive effect The entity A has an activity that regulates an activity of the entity B. For example, A and B are gene products where the catalytic activity of A regulates the kinase activity of B. Vasundra Touré regulates activity of p is indirectly causally upstream of q iff p is causally upstream of q and there exists some process r such that p is causally upstream of r and r is causally upstream of q. pg 2022-09-26T06:07:17Z indirectly causally upstream of p indirectly regulates q iff p is indirectly causally upstream of q and p regulates q. pg 2022-09-26T06:08:01Z indirectly regulates A diagnostic testing device utilizes a specimen. X device utilizes material Y means X and Y are material entities, and X is capable of some process P that has input Y. https://orcid.org/0000-0001-9625-1899 https://orcid.org/0000-0003-2620-0345 A diagnostic testing device utilizes a specimen means that the diagnostic testing device is capable of an assay, and this assay a specimen as its input. See github ticket https://github.com/oborel/obo-relations/issues/497 2021-11-08T12:00:00Z utilizes device utilizes material A relationship that holds between a process and a characteristic in which process (P) regulates characteristic (C) iff: P results in the existence of C OR affects the intensity or magnitude of C. RO:0019000 gene_ontology regulates_characteristic regulates_characteristic regulates characteristic A relationship that holds between a process and a characteristic in which process (P) positively regulates characteristic (C) iff: P results in an increase in the intensity or magnitude of C. RO:0019001 gene_ontology positively_regulates_characteristic positively_regulates_characteristic positively regulates characteristic A relationship that holds between a process and a characteristic in which process (P) negatively regulates characteristic (C) iff: P results in a decrease in the intensity or magnitude of C. RO:0019002 gene_ontology negatively_regulates_characteristic negatively_regulates_characteristic negatively regulates characteristic p has anatomical participant c iff p has participant c, and c is an anatomical entity cjm 2018-09-26T01:08:58Z RO:0040036 external results_in_changes_to_anatomical_or_cellular_structure results_in_changes_to_anatomical_or_cellular_structure results in changes to anatomical or cellular structure chebi_ontology has_functional_parent false false has functional parent chebi_ontology has_parent_hydride false false has parent hydride chebi_ontology is_conjugate_acid_of true false is conjugate acid of chebi_ontology is_conjugate_base_of true false is conjugate base of chebi_ontology is_enantiomer_of true false is enantiomer of chebi_ontology is_substituent_group_from false false is substituent group from chebi_ontology is_tautomer_of true is tautomer of A realizable entity the manifestation of which brings about some result or end that is not essential to a continuant in virtue of the kind of thing that it is but that can be served or participated in by that kind of continuant in some kinds of natural, social or institutional contexts. role An independent continuant that is spatially extended whose identity is independent of that of other entities and can be maintained through time. material entity A material entity that is ingested and contributes to survival, growth and development dietary chemical component Material which remains after the removal of water from plant matter. dry matter dry plant matter Carbohydrates that are absorbed in the small intestine and provide carbohydrate for metabolism in monogastric animals. digestible carbohydrate available carbohydrate Carbohydrates that are absorbed in the small intestine and provide carbohydrate for metabolism in monogastric animals. Available carbohydrate in monosaccharide and disaccharide form free sugar Available carbohydrate in monosaccharide and disaccharide form A carbohydrate that resists enzymatic digestion in the digestive systems of humans and other monogastric species. dietary fibre A carbohydrate that resists enzymatic digestion in the digestive systems of humans and other monogastric species. Dietary fibre which dissolves in water and is primarily fermented in the colon of monogastric animals by gut bacteria soluble dietary fibre Dietary fibre which dissolves in water and is primarily fermented in the colon of monogastric animals by gut bacteria A portion of starch that cannot be digested by amylases in the small intestine resistant starch A portion of starch that cannot be digested by amylases in the small intestine Dietary fibre which does not dissolve in water and is inert to digestive enzymes in the upper gastrointestinal tract of monogastric animals. insoluble dietary fibre Dietary fibre which does not dissolve in water and is inert to digestive enzymes in the upper gastrointestinal tract of monogastric animals. A protein that accumulates in developing seeds or grains. seed storage protein A protein that accumulates in developing seeds or grains. A mineral nutrient that represents a major proportion of the minerals required in the diet macromineral macro element Mineral nutrient that is present in a very low concentration within the diet micromineral trace element A plant metabolite that is not essential for growth or division of plant cells. secondary metabolite plant secondary metabolite An organic molecule that has a vitamin(role) This term can be assigned to CHEBI or any other ontology that claims it vitamin (molecular entity) Calcium ingested by an organism that contributes to the survival, growth, development, or other biological function of itself, its bionts, or its holobionts dietary calcium Calcium ingested by an organism that contributes to the survival, growth, development, or other biological function of itself, its bionts, or its holobionts Chlorine ingested by an organism that contributes to the survival, growth, development, or other biological function of itself, its bionts, or its holobionts dietary chlorine Chlorine ingested by an organism that contributes to the survival, growth, development, or other biological function of itself, its bionts, or its holobionts Magnesium ingested by an organism that contributes to the survival, growth, development, or other biological function of itself, its bionts, or its holobionts dietary magnesium Magnesium ingested by an organism that contributes to the survival, growth, development, or other biological function of itself, its bionts, or its holobionts Phosphorus ingested by an organism that contributes to the survival, growth, development, or other biological function of itself, its bionts, or its holobionts dietary phosphorus Phosphorus ingested by an organism that contributes to the survival, growth, development, or other biological function of itself, its bionts, or its holobionts Potassium ingested by an organism that contributes to the survival, growth, development, or other biological function of itself, its bionts, or its holobionts dietary potassium Sodium ingested by an organism that contributes to the survival, growth, development, or other biological function of itself, its bionts, or its holobionts dietary sodium Sulfur ingested by an organism that contributes to the survival, growth, development, or other biological function of itself, its bionts, or its holobionts dietary sulfur Sulfur ingested by an organism that contributes to the survival, growth, development, or other biological function of itself, its bionts, or its holobionts Chromium ingested by an organism that contributes to the survival, growth, development, or other biological function of itself, its bionts, or its holobionts dietary chromium Chromium ingested by an organism that contributes to the survival, growth, development, or other biological function of itself, its bionts, or its holobionts Copper ingested by an organism that contributes to the survival, growth, development, or other biological function of itself, its bionts, or its holobionts dietary copper Copper ingested by an organism that contributes to the survival, growth, development, or other biological function of itself, its bionts, or its holobionts Fluorine ingested by an organism that contributes to the survival, growth, development, or other biological function of itself, its bionts, or its holobionts dietary fluorine Fluorine ingested by an organism that contributes to the survival, growth, development, or other biological function of itself, its bionts, or its holobionts Iodine ingested by an organism that contributes to the survival, growth, development, or other biological function of itself, its bionts, or its holobionts dietary iodine Iodine ingested by an organism that contributes to the survival, growth, development, or other biological function of itself, its bionts, or its holobionts Iron ingested by an organism that contributes to the survival, growth, development, or other biological function of itself, its bionts, or its holobionts dietary iron Manganese ingested by an organism that contributes to the survival, growth, development, or other biological function of itself, its bionts, or its holobionts dietary manganese Manganese ingested by an organism that contributes to the survival, growth, development, or other biological function of itself, its bionts, or its holobionts Molybdenum ingested by an organism that contributes to the survival, growth, development, or other biological function of itself, its bionts, or its holobionts dietary molybdenum Molybdenum ingested by an organism that contributes to the survival, growth, development, or other biological function of itself, its bionts, or its holobionts Selenium ingested by an organism that contributes to the survival, growth, development, or other biological function of itself, its bionts, or its holobionts dietary selenium Selenium ingested by an organism that contributes to the survival, growth, development, or other biological function of itself, its bionts, or its holobionts Zinc ingested by an organism that contributes to the survival, growth, development, or other biological function of itself, its bionts, or its holobionts dietary zinc A complex carbohydrate with various rheological properties that result in viscoelastic behavior gum A complex carbohydrate with various rheological properties that result in viscoelastic behavior Amylopectin which is derived from starch. amylopectin derived from starch Amylose which is derived from starch. amylose derived from starch Galacturonan which is derived from pectin. galacturonan derived from pectin Rhamnogalacturonan which is derived from pectin. rhamnogalacturonan derived from pectin Mannan which is derived from hemicellulose. mannan derived from hemicellulose Xylan which is derived from hemicellulose. xylan derived from hemicellulose Xyloglucan which is derived from hemicellulose. xyloglucan derived from hemicellulose Glucomannan which is derived from hemicellulose. glucomannan derived from hemicellulose Arabinoxylan which is derived from hemicellulose. arabinoxylan derived from hemicellulose Fructan which is derived from hemicellulose. fructan derived from hemicellulose Arabinan which is derived from hemicellulose. arabinan derived from hemicellulose Galactomannan which is derived from hemicellulose. galactomannan derived from hemicellulose Galactan which is derived from hemicellulose. galactan derived from hemicellulose Glucose which is derived from amylopectin derived from starch. glucose derived from amylopectin derived from starch Glucose which is derived from amylose derived from starch. glucose derived from amylose derived from starch Glucose which is derived from sucrose. glucose derived from sucrose Fructose which is derived from sucrose. fructose derived from sucrose Glucose which is derived from maltose. glucose derived from maltose Galacturonic acid which is derived from galacturonan derived from pectin. galacturonic acid derived from galacturonan derived from pectin Rhamnose which is derived from rhamnogalacturonan derived from pectin. rhamnose derived from rhamnogalacturonan derived from pectin D-apiose which is derived from rhamnogalacturonan derived from pectin. D-apiose derived from rhamnogalacturonan derived from pectin Galacturonic acid which is derived from rhamnogalacturonan derived from pectin. galacturonic acid derived from rhamnogalacturonan derived from pectin Fucose which is derived from rhamnogalacturonan derived from pectin. fucose derived from rhamnogalacturonan derived from pectin Xylose which is derived from rhamnogalacturonan derived from pectin. xylose derived from rhamnogalacturonan derived from pectin Arabinose which is derived from rhamnogalacturonan derived from pectin. arabinose derived from rhamnogalacturonan derived from pectin Galactose which is derived from rhamnogalacturonan derived from pectin. galactose derived from rhamnogalacturonan derived from pectin Raffinose which is derived from raffinose family oligosaccharide. raffinose derived from raffinose family oligosaccharide Galactose which is derived from raffinose derived from raffinose family oligosaccharide. galactose derived from raffinose derived from raffinose family oligosaccharide Glucose which is derived from raffinose derived from raffinose family oligosaccharide. glucose derived from raffinose derived from raffinose family oligosaccharide Fructose which is derived from raffinose derived from raffinose family oligosaccharide. fructose derived from raffinose derived from raffinose family oligosaccharide Stachyose which is derived from raffinose family oligosaccharide. stachyose derived from raffinose family oligosaccharide Galactose which is derived from stachyose derived from raffinose family oligosaccharide. galactose derived from stachyose derived from raffinose family oligosaccharide Glucose which is derived from stachyose derived from raffinose family oligosaccharide. glucose derived from stachyose derived from raffinose family oligosaccharidee Fructose which is derived from stachyose derived from raffinose family oligosaccharide. fructose derived from stachyose derived from raffinose family oligosaccharide Verbascose which is derived from raffinose family oligosaccharide. verbascose derived from raffinose family oligosaccharide Galactose which is derived from verbascose derived from raffinose family oligosaccharide. galactose derived from verbascose derived from raffinose family oligosaccharide Glucose which is derived from verbascose derived from raffinose family oligosaccharide. glucose derived from verbascose derived from raffinose family oligosaccharide Fructose which is derived from verbascose derived from raffinose family oligosaccharide. fructose derived from verbascose derived from raffinose family oligosaccharide Glucose which is derived from amorphous cellulose. glucose derived from amorphous cellulose Mannose which is derived from mannan derived from hemicellulose. mannose derived from mannan derived from hemicellulose Glucose which is derived from xylan derived from hemicellulose. glucose derived from xylan derived from hemicellulose Xylose which is derived from xylan derived from hemicellulose. xylose derived from xylan derived from hemicellulose Glucose which is derived from xyloglucan derived from hemicellulose. glucose derived from xyloglucan derived from hemicellulose Xylose which is derived from xyloglucan derived from hemicellulose. xylose derived from xyloglucan derived from hemicellulose Glucose which is derived from glucomannan derived from hemicellulose. glucose derived from glucomannan derived from hemicellulose Mannose which is derived from glucomannan derived from hemicellulose. mannose derived from glucomannan derived from hemicellulose Arabinose which is derived from arabinoxylan derived from hemicellulose. arabinose derived from arabinoxylan derived from hemicellulose Xylose which is derived from arabinoxylan derived from hemicellulose. xylose derived from arabinoxylan derived from hemicellulose Inulin which is derived from fructan. inulin derived from fructan Fructose which is derived from inulin derived from fructan. fructose derived from inulin derived from fructan Amino acid which is derived from protein. amino acid derived from protein The concentration of dietary chemical component when measured in some material entity. material entity dietary chemical component concentration concentration of dietary chemical component in material entity The concentration of water when measured in some material entity. INFOODs:WATER USDA_NDB:1051 material entity water concentration concentration of water in material entity The concentration of dry plant matter when measured in some material entity. INFOODs:DM INFOODs:SOLID INFOODs:SOLO material entity dry plant matter concentration concentration of dry plant matter in material entity The concentration of ash when measured in some material entity. INFOODs:ASH USDA_NDB:1007 material entity ash concentration concentration of ash in material entity The concentration of carbohydrate when measured in some material entity. USDA_NDB:2039 material entity carbohydrate concentration concentration of carbohydrate in material entity The concentration of polysaccharide when measured in some material entity. INFOODs:POLYSAC material entity polysaccharide concentration concentration of polysaccharide in material entity The concentration of starch when measured in some material entity. INFOODs:STARCH INFOODs:STARCH- INFOODs:STARCHM USDA_NDB:1009 material entity starch concentration concentration of starch in material entity The concentration of pectin when measured in some material entity. INFOODs:PECT USDA_NDB:1017 material entity pectin concentration concentration of pectin in material entity The concentration of amorphous cellulose when measured in some material entity. INFOODs:CELLU material entity amorphous cellulose concentration concentration of amorphous cellulose in material entity The concentration of hemicellulose when measured in some material entity. INFOODs:HEMCEL material entity hemicellulose concentration concentration of hemicellulose in material entity The concentration of inulin when measured in some material entity. INFOODs:INULN USDA_NDB:1403 material entity inulin concentration concentration of inulin in material entity The concentration of monosaccharide when measured in some material entity. INFOODs:MNSAC material entity monosaccharide concentration concentration of monosaccharide in material entity The concentration of glucose when measured in some material entity. INFOODs:GLUFB INFOODs:GLUS USDA_NDB:1011 material entity glucose concentration concentration of glucose in material entity The concentration of fructose when measured in some material entity. INFOODs:FRUFB INFOODs:FRUS USDA_NDB:1012 material entity fructose concentration concentration of fructose in material entity The concentration of rhamnose when measured in some material entity. INFOODs:RHAFB INFOODs:RHAS material entity rhamnose concentration concentration of rhamnose in material entity The concentration of D-apiose when measured in some material entity. material entity D-apiose concentration concentration of D-apiose in material entity The concentration of galacturonic acid when measured in some material entity. INFOODs:GALAAC USDA_NDB:1034 material entity galacturonic acid concentration concentration of galacturonic acid in material entity The concentration of fucose when measured in some material entity. INFOODs:FUCOS material entity fucose concentration concentration of fucose in material entity The concentration of xylose when measured in some material entity. INFOODs:XYLFB USDA_NDB:1074 material entity xylose concentration concentration of xylose in material entity The concentration of arabinose when measured in some material entity. INFOODs:ARAFB INFOODs:ARAS USDA_NDB:1073 material entity arabinose concentration concentration of arabinose in material entity The concentration of galactose when measured in some material entity. INFOODs:GALS USDA_NDB:1075 material entity galactose concentration concentration of galactose in material entity The concentration of mannose when measured in some material entity. INFOODs:MANFB INFOODs:MANS USDA_NDB:1399 material entity mannose concentration concentration of mannose in material entity The concentration of ribose when measured in some material entity. INFOODs:RIBS USDA_NDB:1081 material entity ribose concentration concentration of ribose in material entity The concentration of disaccharide when measured in some material entity. INFOODs:DISAC material entity disaccharide concentration concentration of disaccharide in material entity The concentration of sucrose when measured in some material entity. INFOODs:SUCS USDA_NDB:1010 material entity sucrose concentration concentration of sucrose in material entity The concentration of trehalose when measured in some material entity. INFOODs:TRES material entity trehalose concentration concentration of trehalose in material entity The concentration of maltose when measured in some material entity. INFOODs:MALS USDA_NDB:1014 material entity maltose concentration concentration of maltose in material entity The concentration of oligosaccharide when measured in some material entity. INFOODs:OLSAC INFOODs:OLSACM USDA_NDB:1069 material entity oligosaccharide concentration concentration of oligosaccharide in material entity The concentration of raffinose family oligosaccharide when measured in some material entity. INFOODs:RAFS material entity raffinose family oligosaccharide concentration concentration of raffinose family oligosaccharide in material entity The concentration of raffinose when measured in some material entity. INFOODs:RAFS USDA_NDB:1076 material entity raffinose concentration concentration of raffinose in material entity The concentration of stachyose when measured in some material entity. INFOODs:STAS INFOODs:STASM USDA_NDB:1077 material entity stachyose concentration concentration of stachyose in material entity The concentration of verbascose when measured in some material entity. INFOODs:VERS INFOODs:VERSM USDA_NDB:2063 material entity verbascose concentration concentration of verbascose in material entity The concentration of available carbohydrate when measured in some material entity. INFOODs:CHOAVL INFOODs:CHOAVL- INFOODs:CHOAVLDF INFOODs:CHOAVLM INFOODs:CHOAVLO USDA_NDB:1005 material entity available carbohydrate concentration concentration of available carbohydrate in material entity The concentration of free sugar when measured in some material entity. INFOODs:SUGAR INFOODs:SUGAR- INFOODs:SUGARM USDA_NDB:1063 material entity free sugar concentration concentration of free sugar in material entity The concentration of dietary fibre when measured in some material entity. INFOODs:FIB- INFOODs:FIBC INFOODs:FIBDF INFOODs:FIBTGLC USDA_NDB:1079 USDA_NDB:2033 USDA_NDB:3020 material entity dietary fibre concentration concentration of dietary fibre in material entity The concentration of soluble dietary fibre when measured in some material entity. INFOODs:FIBGLCSSOL INFOODs:PSACNSS USDA_NDB:1082 material entity soluble dietary fibre concentration concentration of soluble dietary fibre in material entity The concentration of resistant starch when measured in some material entity. INFOODs:STARES INFOODs:STARES1 INFOODs:STARES2 INFOODs:STARES3 INFOODs:STARES4 USDA_NDB:1009 material entity resistant starch concentration concentration of resistant starch in material entity The concentration of insoluble dietary fibre when measured in some material entity. INFOODs:FIBC INFOODs:FIBGLCSINS INFOODs:FIBGLCSINSOL INFOODs:FIBINS INFOODs:FIBTGLCS USDA_NDB:1084 USDA_NDB:2034 material entity insoluble dietary fibre concentration concentration of insoluble dietary fibre in material entity The concentration of fructan when measured in some material entity. INFOODs:FRUTN INFOODs:FRUTNM material entity fructan concentration concentration of fructan in material entity The concentration of protein when measured in some material entity. INFOODs:PROT- USDA_NDB:1003 material entity protein concentration concentration of protein in material entity The concentration of seed storage protein when measured in some material entity. INFOODs:PROTA INFOODs:PROTPL USDA_NDB:1003 material entity seed storage protein concentration concentration of seed storage protein in material entity The concentration of albumin type when measured in some material entity. INFOODs:ALBU material entity albumin type concentration concentration of albumin type in material entity The concentration of globulin type when measured in some material entity. INFOODs:GLOB material entity globulin type concentration concentration of globulin type in material entity The concentration of prolamin when measured in some material entity. material entity prolamin concentration concentration of prolamin in material entity The concentration of cruciferin when measured in some material entity. material entity cruciferin concentration concentration of cruciferin in material entity The concentration of glutenin when measured in some material entity. INFOODs:GLUTN material entity glutenin concentration concentration of glutenin in material entity The concentration of alanine when measured in some material entity. INFOODs:ALA USDA_NDB:1222 material entity alanine concentration concentration of alanine in material entity The concentration of arginine when measured in some material entity. INFOODs:ARG USDA_NDB:1220 material entity arginine concentration concentration of arginine in material entity The concentration of asparagine when measured in some material entity. INFOODs:ASN USDA_NDB:1231 material entity asparagine concentration concentration of asparagine in material entity The concentration of aspartic acid when measured in some material entity. INFOODs:ASP USDA_NDB:1223 material entity aspartic acid concentration concentration of aspartic acid in material entity The concentration of cysteine when measured in some material entity. INFOODs:CYSTE USDA_NDB:1232 material entity cysteine concentration concentration of cysteine in material entity The concentration of glutamic acid when measured in some material entity. INFOODs:GLU USDA_NDB:1224 material entity glutamic acid concentration concentration of glutamic acid in material entity The concentration of glutamine when measured in some material entity. INFOODs:GLN USDA_NDB:1233 material entity glutamine concentration concentration of glutamine in material entity The concentration of glycine when measured in some material entity. INFOODs:GLY USDA_NDB:1225 material entity glycine concentration concentration of glycine in material entity The concentration of histidine when measured in some material entity. INFOODs:HIS USDA_NDB:1221 material entity histidine concentration concentration of histidine in material entity The concentration of hydroxyproline when measured in some material entity. INFOODs:HYP USDA_NDB:1228 material entity hydroxyproline concentration concentration of hydroxyproline in material entity The concentration of isoleucine when measured in some material entity. INFOODs:ILE USDA_NDB:1212 material entity isoleucine concentration concentration of isoleucine in material entity The concentration of leucine when measured in some material entity. INFOODs:LEU USDA_NDB:1213 material entity leucine concentration concentration of leucine in material entity The concentration of lysine when measured in some material entity. INFOODs:LYS USDA_NDB:1214 material entity lysine concentration concentration of lysine in material entity The concentration of methionine when measured in some material entity. INFOODs:MET USDA_NDB:1215 material entity methionine concentration concentration of methionine in material entity The concentration of phenylalanine when measured in some material entity. INFOODs:PHE USDA_NDB:1217 material entity phenylalanine concentration concentration of phenylalanine in material entity The concentration of proline when measured in some material entity. INFOODs:PRO USDA_NDB:1226 material entity proline concentration concentration of proline in material entity The concentration of serine when measured in some material entity. INFOODs:SER USDA_NDB:1227 material entity serine concentration concentration of serine in material entity The concentration of threonine when measured in some material entity. INFOODs:THR USDA_NDB:1211 material entity threonine concentration concentration of threonine in material entity The concentration of tryptophan when measured in some material entity. INFOODs:TRP USDA_NDB:1210 material entity tryptophan concentration concentration of tryptophan in material entity The concentration of tyrosine when measured in some material entity. INFOODs:TYR USDA_NDB:1218 material entity tyrosine concentration concentration of tyrosine in material entity The concentration of valine when measured in some material entity. INFOODs:VAL USDA_NDB:1219 material entity valine concentration concentration of valine in material entity The concentration of lipid when measured in some material entity. INFOODs:FATPL USDA_NDB:2044 material entity lipid concentration concentration of lipid in material entity The concentration of diglyceride when measured in some material entity. INFOODs:DGLY material entity diglyceride concentration concentration of diglyceride in material entity The concentration of cis-fatty acid when measured in some material entity. INFOODs:FACIS material entity cis-fatty acid concentration concentration of cis-fatty acid in material entity The concentration of octanoic acid when measured in some material entity. material entity octanoic acid concentration concentration of octanoic acid in material entity The concentration of pentadecanoic acid when measured in some material entity. material entity pentadecanoic acid concentration concentration of pentadecanoic acid in material entity The concentration of tetracosanoic acid when measured in some material entity. material entity tetracosanoic acid concentration concentration of tetracosanoic acid in material entity The concentration of dodecanoic acid when measured in some material entity. material entity dodecanoic acid concentration concentration of dodecanoic acid in material entity The concentration of tetradecanoic acid when measured in some material entity. material entity tetradecanoic acid concentration concentration of tetradecanoic acid in material entity The concentration of hexadecanoic acid when measured in some material entity. material entity hexadecanoic acid concentration concentration of hexadecanoic acid in material entity The concentration of heptadecanoic acid when measured in some material entity. material entity heptadecanoic acid concentration concentration of heptadecanoic acid in material entity The concentration of octadecanoic acid when measured in some material entity. material entity octadecanoic acid concentration concentration of octadecanoic acid in material entity The concentration of icosanoic acid when measured in some material entity. material entity icosanoic acid concentration concentration of icosanoic acid in material entity The concentration of docosanoic acid when measured in some material entity. material entity docosanoic acid concentration concentration of docosanoic acid in material entity The concentration of propionic acid when measured in some material entity. INFOODs:PROPAC material entity propionic acid concentration concentration of propionic acid in material entity The concentration of myristoleic acid when measured in some material entity. material entity myristoleic acid concentration concentration of myristoleic acid in material entity The concentration of palmitoleic acid when measured in some material entity. material entity palmitoleic acid concentration concentration of palmitoleic acid in material entity The concentration of oleic acid when measured in some material entity. material entity oleic acid concentration concentration of oleic acid in material entity The concentration of palmitelaidic acid when measured in some material entity. material entity palmitelaidic acid concentration concentration of palmitelaidic acid in material entity The concentration of elaidic acid when measured in some material entity. material entity elaidic acid concentration concentration of elaidic acid in material entity The concentration of vaccenic acid when measured in some material entity. material entity vaccenic acid concentration concentration of vaccenic acid in material entity The concentration of (11Z)-icos-11-enoic acid when measured in some material entity. material entity (11Z)-icos-11-enoic acid concentration concentration of (11Z)-icos-11-enoic acid in material entity The concentration of erucic acid when measured in some material entity. material entity erucic acid concentration concentration of erucic acid in material entity The concentration of (15Z)-tetracosenoic acid when measured in some material entity. material entity (15Z)-tetracosenoic acid concentration concentration of (15Z)-tetracosenoic acid in material entity The concentration of ω−3 fatty acid when measured in some material entity. material entity ω−3 fatty acid concentration concentration of ω−3 fatty acid in material entity The concentration of all-cis-octadeca-6,9,12,15-tetraenoic acid when measured in some material entity. material entity all-cis-octadeca-6,9,12,15-tetraenoic acid concentration concentration of all-cis-octadeca-6,9,12,15-tetraenoic acid in material entity The concentration of all-cis-icosa-11,14,17-trienoic acid when measured in some material entity. material entity all-cis-icosa-11,14,17-trienoic acid concentration concentration of all-cis-icosa-11,14,17-trienoic acid in material entity The concentration of eicosatetraenoic acid when measured in some material entity. material entity eicosatetraenoic acid concentration concentration of eicosatetraenoic acid in material entity The concentration of 6Z,9Z,12Z,15Z,18Z,21Z-tetracosahexaenoic acid when measured in some material entity. material entity 6Z,9Z,12Z,15Z,18Z,21Z-tetracosahexaenoic acid concentration concentration of 6Z,9Z,12Z,15Z,18Z,21Z-tetracosahexaenoic acid in material entity The concentration of α-linolenic acid when measured in some material entity. material entity α-linolenic acid concentration concentration of α-linolenic acid in material entity The concentration of icosapentaenoic acid when measured in some material entity. material entity icosapentaenoic acid concentration concentration of icosapentaenoic acid in material entity The concentration of docosapentaenoic acid when measured in some material entity. material entity docosapentaenoic acid concentration concentration of docosapentaenoic acid in material entity The concentration of docosahexaenoic acid when measured in some material entity. material entity docosahexaenoic acid concentration concentration of docosahexaenoic acid in material entity The concentration of 9-hydroxy-5E,7Z,11Z,14Z-eicosatetraenoic acid when measured in some material entity. material entity 9-hydroxy-5E,7Z,11Z,14Z-eicosatetraenoic acid concentration concentration of 9-hydroxy-5E,7Z,11Z,14Z-eicosatetraenoic acid in material entity The concentration of linolenic acid when measured in some material entity. material entity linolenic acid concentration concentration of linolenic acid in material entity The concentration of ω−6 fatty acid when measured in some material entity. material entity ω−6 fatty acid concentration concentration of ω−6 fatty acid in material entity The concentration of linoleic acid when measured in some material entity. material entity linoleic acid concentration concentration of linoleic acid in material entity The concentration of all-cis-icosa-8,11,14-trienoic acid when measured in some material entity. material entity all-cis-icosa-8,11,14-trienoic acid concentration concentration of all-cis-icosa-8,11,14-trienoic acid in material entity The concentration of γ-linolenic acid when measured in some material entity. material entity γ-linolenic acid concentration concentration of γ-linolenic acid in material entity The concentration of icosadienoic acid when measured in some material entity. material entity icosadienoic acid concentration concentration of icosadienoic acid in material entity The concentration of arachidonic acid when measured in some material entity. material entity arachidonic acid concentration concentration of arachidonic acid in material entity The concentration of docosadienoic acid when measured in some material entity. material entity docosadienoic acid concentration concentration of docosadienoic acid in material entity The concentration of 7,10,13,16-docosatetraenoic acid when measured in some material entity. material entity 7,10,13,16-docosatetraenoic acid concentration concentration of 7,10,13,16-docosatetraenoic acid in material entity The concentration of trans-fatty acid when measured in some material entity. INFOODs:FATRN USDA_NDB:1257 material entity trans-fatty acid concentration concentration of trans-fatty acid in material entity The concentration of capsaicin when measured in some material entity. INFOODs:CAPSA material entity capsaicin concentration concentration of capsaicin in material entity The concentration of phospholipid when measured in some material entity. INFOODs:PHOLIP USDA_NDB:1255 material entity phospholipid concentration concentration of phospholipid in material entity The concentration of phosphatidylcholine when measured in some material entity. INFOODs:CHLNP material entity phosphatidylcholine concentration concentration of phosphatidylcholine in material entity The concentration of phosphatidylethanolamine when measured in some material entity. INFOODs:PHOETHN material entity phosphatidylethanolamine concentration concentration of phosphatidylethanolamine in material entity The concentration of phosphatidyl-L-serine when measured in some material entity. INFOODs:PHOSER material entity phosphatidyl-L-serine concentration concentration of phosphatidyl-L-serine in material entity The concentration of phosphatidylinositol when measured in some material entity. INFOODs:PHOINOTL material entity phosphatidylinositol concentration concentration of phosphatidylinositol in material entity The concentration of lysophosphatidylcholine when measured in some material entity. material entity lysophosphatidylcholine concentration concentration of lysophosphatidylcholine in material entity The concentration of glycolipid when measured in some material entity. INFOODs:GLYLIP USDA_NDB:1256 material entity glycolipid concentration concentration of glycolipid in material entity The concentration of glycoglycerolipid when measured in some material entity. material entity glycoglycerolipid concentration concentration of glycoglycerolipid in material entity The concentration of sterol when measured in some material entity. INFOODs:STEOTH INFOODs:STERFRE INFOODs:STERT USDA_NDB:3007 material entity sterol concentration concentration of sterol in material entity The concentration of campestanol when measured in some material entity. USDA_NDB:1289 material entity campestanol concentration concentration of campestanol in material entity The concentration of cholesterol when measured in some material entity. INFOODs:CHOLEST USDA_NDB:1253 material entity cholesterol concentration concentration of cholesterol in material entity The concentration of lupeol when measured in some material entity. material entity lupeol concentration concentration of lupeol in material entity The concentration of phytosterols when measured in some material entity. INFOODs:PHYSTR USDA_NDB:1283 material entity phytosterols concentration concentration of phytosterols in material entity The concentration of avenasterol when measured in some material entity. INFOODs:AVEDT USDA_NDB:3011 material entity avenasterol concentration concentration of avenasterol in material entity The concentration of isofucosterol when measured in some material entity. INFOODs:AVED5 USDA_NDB:1296 material entity isofucosterol concentration concentration of isofucosterol in material entity The concentration of delta7-avenasterol when measured in some material entity. INFOODs:AVED7 USDA_NDB:1295 material entity delta7-avenasterol concentration concentration of delta7-avenasterol in material entity The concentration of brassicasterol when measured in some material entity. INFOODs:BRASTR USDA_NDB:1287 material entity brassicasterol concentration concentration of brassicasterol in material entity The concentration of campesterol when measured in some material entity. INFOODs:CAMT USDA_NDB:1286 material entity campesterol concentration concentration of campesterol in material entity The concentration of ergosterol when measured in some material entity. INFOODs:ERGSTR USDA_NDB:1284 material entity ergosterol concentration concentration of ergosterol in material entity The concentration of sitosterol when measured in some material entity. INFOODs:SITSTR USDA_NDB:3010 material entity sitosterol concentration concentration of sitosterol in material entity The concentration of stigmastanol when measured in some material entity. material entity stigmastanol concentration concentration of stigmastanol in material entity The concentration of stigmasterol when measured in some material entity. INFOODs:STGSTR USDA_NDB:1285 material entity stigmasterol concentration concentration of stigmasterol in material entity The concentration of delta7-stigmasterol when measured in some material entity. INFOODs:STID7 material entity delta7-stigmasterol concentration concentration of delta7-stigmasterol in material entity The concentration of mineral nutrient when measured in some material entity. USDA_NDB:2043 material entity mineral nutrient concentration concentration of mineral nutrient in material entity The concentration of macro element when measured in some material entity. material entity macro element concentration concentration of macro element in material entity The concentration of calcium(2+) when measured in some material entity. INFOODs:CA USDA_NDB:1087 material entity calcium(2+) concentration concentration of calcium(2+) in material entity The concentration of chloride when measured in some material entity. INFOODs:CLD material entity chloride concentration concentration of chloride in material entity The concentration of magnesium(2+) when measured in some material entity. material entity magnesium(2+) concentration concentration of magnesium(2+) in material entity The concentration of nitrogen atom when measured in some material entity. INFOODs:NAM INFOODs:NT USDA_NDB:1002 material entity nitrogen atom concentration concentration of nitrogen atom in material entity The concentration of phosphide(3−) when measured in some material entity. material entity phosphide(3−) concentration concentration of phosphide(3−) in material entity The concentration of potassium(1+) when measured in some material entity. INFOODs:K USDA_NDB:1092 material entity potassium(1+) concentration concentration of potassium(1+) in material entity The concentration of sodium(1+) when measured in some material entity. INFOODs:NA USDA_NDB:1093 material entity sodium(1+) concentration concentration of sodium(1+) in material entity The concentration of sulfide(2−) when measured in some material entity. INFOODs:S USDA_NDB:1094 material entity sulfide(2−) concentration concentration of sulfide(2−) in material entity The concentration of trace element when measured in some material entity. material entity trace element concentration concentration of trace element in material entity The concentration of aluminium(3+) when measured in some material entity. INFOODs:AL material entity aluminium(3+) concentration concentration of aluminium(3+) in material entity The concentration of antimony(3+) when measured in some material entity. INFOODs:SB material entity antimony(3+) concentration concentration of antimony(3+) in material entity The concentration of arsenic(3+) when measured in some material entity. INFOODs:AS material entity arsenic(3+) concentration concentration of arsenic(3+) in material entity The concentration of boron(3+) when measured in some material entity. INFOODs:B USDA_NDB:1137 material entity boron(3+) concentration concentration of boron(3+) in material entity The concentration of cadmium(2+) when measured in some material entity. INFOODs:CD material entity cadmium(2+) concentration concentration of cadmium(2+) in material entity The concentration of chromium(2+) when measured in some material entity. INFOODs:CR USDA_NDB:1096 material entity chromium(2+) concentration concentration of chromium(2+) in material entity The concentration of cobalt(2+) when measured in some material entity. INFOODs:CO USDA_NDB:1097 material entity cobalt(2+) concentration concentration of cobalt(2+) in material entity The concentration of copper(2+) when measured in some material entity. INFOODs:CU USDA_NDB:1098 material entity copper(2+) concentration concentration of copper(2+) in material entity The concentration of fluoride when measured in some material entity. INFOODs:FD USDA_NDB:1099 material entity fluoride concentration concentration of fluoride in material entity The concentration of iodide when measured in some material entity. INFOODs:ID USDA_NDB:1100 material entity iodide concentration concentration of iodide in material entity The concentration of iron(2+) when measured in some material entity. INFOODs:FE USDA_NDB:1089 material entity iron(2+) concentration concentration of iron(2+) in material entity The concentration of lead(2+) when measured in some material entity. INFOODs:PB material entity lead(2+) concentration concentration of lead(2+) in material entity The concentration of lithium(1+) when measured in some material entity. INFOODs:LI material entity lithium(1+) concentration concentration of lithium(1+) in material entity The concentration of manganese atom when measured in some material entity. INFOODs:MN USDA_NDB:1101 material entity manganese atom concentration concentration of manganese atom in material entity The concentration of mercury(2+) when measured in some material entity. INFOODs:HG material entity mercury(2+) concentration concentration of mercury(2+) in material entity The concentration of molybdenum(4+) when measured in some material entity. INFOODs:MO USDA_NDB:1102 material entity molybdenum(4+) concentration concentration of molybdenum(4+) in material entity The concentration of nickel(2+) when measured in some material entity. INFOODs:NI USDA_NDB:1146 material entity nickel(2+) concentration concentration of nickel(2+) in material entity The concentration of rubidium(1+) when measured in some material entity. INFOODs:RB material entity rubidium(1+) concentration concentration of rubidium(1+) in material entity The concentration of selenium(2+) when measured in some material entity. INFOODs:SE USDA_NDB:1103 material entity selenium(2+) concentration concentration of selenium(2+) in material entity The concentration of strontium(2+) when measured in some material entity. INFOODs:SR material entity strontium(2+) concentration concentration of strontium(2+) in material entity The concentration of tin(2+) when measured in some material entity. INFOODs:SN material entity tin(2+) concentration concentration of tin(2+) in material entity The concentration of titanium(3+) when measured in some material entity. INFOODs:TI material entity titanium(3+) concentration concentration of titanium(3+) in material entity The concentration of vanadium(2+) when measured in some material entity. INFOODs:V material entity vanadium(2+) concentration concentration of vanadium(2+) in material entity The concentration of zinc(2+) when measured in some material entity. INFOODs:ZN USDA_NDB:1095 material entity zinc(2+) concentration concentration of zinc(2+) in material entity The concentration of barium(2+) when measured in some material entity. INFOODs:BA material entity barium(2+) concentration concentration of barium(2+) in material entity The concentration of caesium(1+) when measured in some material entity. INFOODs:CS material entity caesium(1+) concentration concentration of caesium(1+) in material entity The concentration of bismuth(3+) when measured in some material entity. INFOODs:BI material entity bismuth(3+) concentration concentration of bismuth(3+) in material entity The concentration of lanthanum(2+) when measured in some material entity. INFOODs:LA material entity lanthanum(2+) concentration concentration of lanthanum(2+) in material entity The concentration of salt when measured in some material entity. INFOODs:NACL USDA_NDB:1149 material entity salt concentration concentration of salt in material entity The concentration of sodium chloride when measured in some material entity. material entity sodium chloride concentration concentration of sodium chloride in material entity The concentration of inorganic nitrate salt when measured in some material entity. INFOODs:NITRA INFOODs:NITRI material entity inorganic nitrate salt concentration concentration of inorganic nitrate salt in material entity The concentration of bromide when measured in some material entity. INFOODs:BRD material entity bromide concentration concentration of bromide in material entity The concentration of vitamin (molecular entity) when measured in some material entity. USDA_NDB:2046 material entity vitamin (molecular entity) concentration concentration of vitamin (molecular entity) in material entity The concentration of 5-formyltetrahydrofolic acid when measured in some material entity. USDA_NDB:1192 material entity 5-formyltetrahydrofolic acid concentration concentration of 5-formyltetrahydrofolic acid in material entity The concentration of B vitamin when measured in some material entity. USDA_NDB:3002 material entity B vitamin concentration concentration of B vitamin in material entity The concentration of (6R)-5,10-methenyltetrahydrofolate when measured in some material entity. material entity (6R)-5,10-methenyltetrahydrofolate concentration concentration of (6R)-5,10-methenyltetrahydrofolate in material entity The concentration of vitamin B1 when measured in some material entity. INFOODs:THIA- USDA_NDB:1165 material entity vitamin B1 concentration concentration of vitamin B1 in material entity The concentration of riboflavin when measured in some material entity. INFOODs:RIBF USDA_NDB:1166 material entity riboflavin concentration concentration of riboflavin in material entity The concentration of nicotinic acid when measured in some material entity. INFOODs:NIA- USDA_NDB:1167 material entity nicotinic acid concentration concentration of nicotinic acid in material entity The concentration of (R)-pantothenic acid when measured in some material entity. INFOODs:PANTAC USDA_NDB:1170 material entity (R)-pantothenic acid concentration concentration of (R)-pantothenic acid in material entity The concentration of pyridoxine when measured in some material entity. INFOODs:PYRXN material entity pyridoxine concentration concentration of pyridoxine in material entity The concentration of biotin when measured in some material entity. INFOODs:BIOT USDA_NDB:1176 material entity biotin concentration concentration of biotin in material entity The concentration of folic acid when measured in some material entity. INFOODs:FOLAC USDA_NDB:1186 material entity folic acid concentration concentration of folic acid in material entity The concentration of cyanocob(III)alamin when measured in some material entity. material entity cyanocob(III)alamin concentration concentration of cyanocob(III)alamin in material entity The concentration of vitamin C when measured in some material entity. INFOODs:VITC INFOODs:VITC- USDA_NDB:1162 USDA_NDB:3003 material entity vitamin C concentration concentration of vitamin C in material entity The concentration of L-ascorbic acid when measured in some material entity. INFOODs:ASCL USDA_NDB:1162 material entity L-ascorbic acid concentration concentration of L-ascorbic acid in material entity The concentration of vitamin A when measured in some material entity. INFOODs:VITA INFOODs:VITA- INFOODs:VITAA USDA_NDB:1104 USDA_NDB:1106 USDA_NDB:1156 ex:3001 material entity vitamin A concentration concentration of vitamin A in material entity The concentration of carotenoid when measured in some material entity. INFOODs:CARTOID material entity carotenoid concentration concentration of carotenoid in material entity The concentration of α-carotene when measured in some material entity. INFOODs:CARTA USDA_NDB:1108 material entity α-carotene concentration concentration of α-carotene in material entity The concentration of β-carotene when measured in some material entity. INFOODs:CARTB USDA_NDB:1107 material entity β-carotene concentration concentration of β-carotene in material entity The concentration of 4-hydroxy-all-trans-β-carotene when measured in some material entity. INFOODs:CARTB USDA_NDB:2028 material entity 4-hydroxy-all-trans-β-carotene concentration concentration of 4-hydroxy-all-trans-β-carotene in material entity The concentration of 9-cis-β-carotene when measured in some material entity. INFOODs:CARTBCIS USDA_NDB:1159 material entity 9-cis-β-carotene concentration concentration of 9-cis-β-carotene in material entity The concentration of vitamin D when measured in some material entity. INFOODs:VITD INFOODs:VITD- USDA_NDB:1110 USDA_NDB:3004 material entity vitamin D concentration concentration of vitamin D in material entity The concentration of calcidiol when measured in some material entity. material entity calcidiol concentration concentration of calcidiol in material entity The concentration of vitamin E when measured in some material entity. INFOODs:VITE INFOODs:VITE- INFOODs:VITEA USDA_NDB:1124 USDA_NDB:1158 material entity vitamin E concentration concentration of vitamin E in material entity The concentration of tocopherol when measured in some material entity. INFOODs:TOCPHT material entity tocopherol concentration concentration of tocopherol in material entity The concentration of α-tocopherol when measured in some material entity. INFOODs:TOCPHA USDA_NDB:1109 material entity α-tocopherol concentration concentration of α-tocopherol in material entity The concentration of β-tocopherol when measured in some material entity. INFOODs:TOCPHB USDA_NDB:1125 material entity β-tocopherol concentration concentration of β-tocopherol in material entity The concentration of γ-tocopherol when measured in some material entity. INFOODs:TOCPHG USDA_NDB:1126 material entity γ-tocopherol concentration concentration of γ-tocopherol in material entity The concentration of δ-tocopherol when measured in some material entity. INFOODs:TOCPHD USDA_NDB:1127 material entity δ-tocopherol concentration concentration of δ-tocopherol in material entity The concentration of tocotrienol when measured in some material entity. INFOODs:TOCTRT material entity tocotrienol concentration concentration of tocotrienol in material entity The concentration of α-tocotrienol when measured in some material entity. INFOODs:TOCTRA USDA_NDB:1128 material entity α-tocotrienol concentration concentration of α-tocotrienol in material entity The concentration of β-tocotrienol when measured in some material entity. INFOODs:TOCTRB USDA_NDB:1129 material entity β-tocotrienol concentration concentration of β-tocotrienol in material entity The concentration of γ-tocotrienol when measured in some material entity. INFOODs:TOCTRG USDA_NDB:1130 material entity γ-tocotrienol concentration concentration of γ-tocotrienol in material entity The concentration of δ-tocotrienol when measured in some material entity. INFOODs:TOCTRD USDA_NDB:1131 material entity δ-tocotrienol concentration concentration of δ-tocotrienol in material entity The concentration of vitamin K when measured in some material entity. INFOODs:VITK USDA_NDB:1183 USDA_NDB:3006 material entity vitamin K concentration concentration of vitamin K in material entity The concentration of plant secondary metabolite when measured in some material entity. USDA_NDB:3008 material entity plant secondary metabolite concentration concentration of plant secondary metabolite in material entity The concentration of alkaloid when measured in some material entity. USDA_NDB:3013 material entity alkaloid concentration concentration of alkaloid in material entity The concentration of caffeine when measured in some material entity. INFOODs:CAFFN USDA_NDB:1057 material entity caffeine concentration concentration of caffeine in material entity The concentration of mescaline when measured in some material entity. material entity mescaline concentration concentration of mescaline in material entity The concentration of theobromine when measured in some material entity. INFOODs:THEBRN USDA_NDB:1058 material entity theobromine concentration concentration of theobromine in material entity The concentration of phenols when measured in some material entity. USDA_NDB:3019 material entity phenols concentration concentration of phenols in material entity The concentration of polyphenol when measured in some material entity. INFOODs:POLYPHENT USDA_NDB:1209 material entity polyphenol concentration concentration of polyphenol in material entity The concentration of tannin when measured in some material entity. INFOODs:TAN USDA_NDB:3021 material entity tannin concentration concentration of tannin in material entity The concentration of chlorogenic acid when measured in some material entity. INFOODs:CHLRAC USDA_NDB:1030 material entity chlorogenic acid concentration concentration of chlorogenic acid in material entity The concentration of proanthocyanidin when measured in some material entity. INFOODs:PAPOLY INFOODs:TAN USDA_NDB:3017 material entity proanthocyanidin concentration concentration of proanthocyanidin in material entity The concentration of hydrolysable tannin when measured in some material entity. INFOODs:TAN material entity hydrolysable tannin concentration concentration of hydrolysable tannin in material entity The concentration of ellagitannin when measured in some material entity. INFOODs:ELLAC material entity ellagitannin concentration concentration of ellagitannin in material entity The concentration of gallotannin when measured in some material entity. material entity gallotannin concentration concentration of gallotannin in material entity The concentration of phlorotannin when measured in some material entity. material entity phlorotannin concentration concentration of phlorotannin in material entity The concentration of catechol when measured in some material entity. material entity catechol concentration concentration of catechol in material entity The concentration of phloroglucinol when measured in some material entity. material entity phloroglucinol concentration concentration of phloroglucinol in material entity The concentration of (−)-epigallocatechin 3-gallate when measured in some material entity. INFOODs:EPICATEGC USDA_NDB:1368 material entity (−)-epigallocatechin 3-gallate concentration concentration of (−)-epigallocatechin 3-gallate in material entity The concentration of phenolic acid when measured in some material entity. USDA_NDB:3015 material entity phenolic acid concentration concentration of phenolic acid in material entity The concentration of gallic acid when measured in some material entity. INFOODs:GALLAC USDA_NDB:1035 material entity gallic acid concentration concentration of gallic acid in material entity The concentration of hydroxybenzoic acid when measured in some material entity. material entity hydroxybenzoic acid concentration concentration of hydroxybenzoic acid in material entity The concentration of salicylic acid when measured in some material entity. INFOODs:SALAC USDA_NDB:1045 material entity salicylic acid concentration concentration of salicylic acid in material entity The concentration of hydroquinone O-β-D-glucopyranoside when measured in some material entity. material entity hydroquinone O-β-D-glucopyranoside concentration concentration of hydroquinone O-β-D-glucopyranoside in material entity The concentration of vanillic acid when measured in some material entity. INFOODs:VANAC USDA_NDB:1207 material entity vanillic acid concentration concentration of vanillic acid in material entity The concentration of syringic acid when measured in some material entity. INFOODs:SYRAC material entity syringic acid concentration concentration of syringic acid in material entity The concentration of methyl ketone when measured in some material entity. material entity methyl ketone concentration concentration of methyl ketone in material entity The concentration of acetophenone when measured in some material entity. material entity acetophenone concentration concentration of acetophenone in material entity The concentration of phenylacetic acid when measured in some material entity. material entity phenylacetic acid concentration concentration of phenylacetic acid in material entity The concentration of hydroxycinnamic acid when measured in some material entity. USDA_NDB:3014 material entity hydroxycinnamic acid concentration concentration of hydroxycinnamic acid in material entity The concentration of caffeic acid when measured in some material entity. INFOODs:CAFFAC USDA_NDB:1201 material entity caffeic acid concentration concentration of caffeic acid in material entity The concentration of sinapic acid when measured in some material entity. INFOODs:SINPAC material entity sinapic acid concentration concentration of sinapic acid in material entity The concentration of chromones when measured in some material entity. material entity chromones concentration concentration of chromones in material entity The concentration of Chicoric acid when measured in some material entity. material entity Chicoric acid concentration concentration of Chicoric acid in material entity The concentration of coumaric acid when measured in some material entity. material entity coumaric acid concentration concentration of coumaric acid in material entity