title: ExamplePhenotypeDefinition
author:
- Author1
- Author2
sex:
- Female
- Male
valid_event_data_range: 01/01/2000 - 01/01/2022
agreement_date: 01/01/2000
type: Disease or Syndrome
tags:
- 1
collections:
- 1
description: |-
  ## Header
  Descriptions are formatted in markdown

  ### Subheader
  Continued description, multiline descriptions are allowed
implementation: |-
  ## Implementation of phenotype
  As in the description field, formatted as markdown and multiline implementations are allowed
validation:
- prognostic
phenoflowid: 1
primary_publication: "primary publication"
primary_publication_link: "https://www.primary_publication.com"
primary_publication_doi: "doi:10.1000/11"
publications:
- "publication 1"
- "publication 2"
concepts:
- File (auto-pick columns) - test:
   - type: csv
   - coding_system: 3
   - filepath: ./path/to/file.csv
- File (specify code & description columns) - test:
   - type: csv
   - coding_system: 3
   - code_column: ICD10_CD
   - description_column: ICD10_DEFINITION
   - filepath: ./path/to/file.csv
- Inline (str) - test:
   - type: inline
   - coding_system: 3
   - codes: E10, E11, E12
- Inline (list) - test:
   - type: inline
   - coding_system: 3
   - codes:
      - E10
      - E11
      - E12
- Existing - test:
   - type: existing_concept
   - concept_id: C28771
data_sources:
- 5