//run("Close All"); run("Set Measurements...", "area display redirect=None decimal=5"); a = getTitle(); selectImage(a); // předávám název obrázku // TODO: upravit paramery' probThresh':'0.x', 'nmsThresh':'0.x' run("Command From Macro", "command=[de.csbdresden.stardist.StarDist2D], args=['input':'"+a+"', 'modelChoice':'Versatile (fluorescent nuclei)', 'normalizeInput':'true', 'percentileBottom':'1.0', 'percentileTop':'99.8', 'probThresh':'0.5', 'nmsThresh':'0.7', 'outputType':'Both', 'nTiles':'1', 'excludeBoundary':'2', 'roiPosition':'Automatic', 'verbose':'false', 'showCsbdeepProgress':'true', 'showProbAndDist':'false'], process=[false]"); selectImage("Label Image"); roiManager("Measure"); count = roiManager("count"); print(a +"; " + count);