name: nature-academic-search
version: 2.0.0
description: >
  Declarative manifest for the static/dynamic split. SKILL.md uses this to
  decide which fragments to load for a literature-search request. The main axis
  is the workflow: the user's need maps to one of six coordinated workflows,
  each already a self-contained file.

# Note on axis paths: the workflow files live in references/workflows/ and
# cross-reference the shared modules with ../ relative links. The workflow axis
# therefore points at them in place rather than moving them into
# static/fragments/, which would break those internal links. nature-academic-
# search does not use the prose-oriented nature-shared layer.

always_load:
  - static/core/tools.md
  - static/core/routing-and-ops.md

axes:
  workflow:
    detect: |
      Map the user's need to one workflow. Multiple may apply for a combined
      request (for example search then export); load each that applies.
        multi-source-search   — find literature across PubMed/CrossRef/arXiv and more
        citation-verification — verify or check citations extracted from a document
        mesh-strategy         — build a MeSH/PubMed search strategy
        citation-file-mgmt    — convert/manage .nbib/.ris/.bib citation files
        reference-mgmt        — BibTeX, related-article discovery, ID conversion
        strict-other-citation-impact-audit — audit strict independent citations,
                             influential citers, and citation context
    values:
      multi-source-search:   references/workflows/wf1-multi-source-search.md
      citation-verification: references/workflows/wf2-citation-verification.md
      mesh-strategy:         references/workflows/wf3-mesh-strategy.md
      citation-file-mgmt:    references/workflows/wf4-citation-file-mgmt.md
      reference-mgmt:        references/workflows/wf5-reference-mgmt.md
      strict-other-citation-impact-audit: references/workflows/wf6-strict-other-citation-impact-audit.md
    multi: true

references:
  on_demand:
    - condition: full source reliability tiers (T1/T2/T3) and fallback routing rules
      path: references/source-tiers.md
    - condition: deduplication across sources (used by WFs 1, 2, 5a)
      path: references/dedup-engine.md
    - condition: extracting citations from documents (WF 2)
      path: references/citation-parser.md
    - condition: query construction, source selection, and result ranking
      path: references/search-strategy.md
    - condition: strict other-citation, high-profile citer, and citation-context audit workflow
      path: references/workflows/wf6-strict-other-citation-impact-audit.md
    - condition: RIS/BibTeX format specifications and field mappings
      path: references/ris-bibtex-format.md
    - condition: no-MCP fallback discovery search (OpenAlex, stdlib) when the MCP server is unavailable
      path: scripts/academic_search.py
    - condition: multi-source .nbib/.ris/.bib downloading and conversion
      path: scripts/format-converter.py
    - condition: pre-flight check that API endpoints are reachable before batch operations
      path: scripts/preflight.py