Regions:
  -   seg value: 0
      seg name: "Irrelevant"
      synthseg_labels:
        - background

  -   seg value: 1
      seg name: "White Matter"
      synthseg_labels:
        - brain-stem 
        - left cerebral white matter
        - right cerebellum white matter
        - left cerebellum white matter
        - right cerebral white matter
        - optic chiasm
        - left ventral DC
        - right ventral DC
      # - right thalamus
      # - left thalamus
      # - left pallidum
      # - right pallidum

  -   seg value: 2
      seg name: "Gray Matter"
      synthseg_labels:
        - left cerebellum cortex
        - right cerebellum cortex
        - left cerebral cortex
        - right cerebral cortex
        - left amygdala
        - right amygdala
        - left hippocampus
        - right hippocampus
        - right accumbens area
        - left accumbens area
        - right caudate
        - left caudate
      # - right thalamus
      # - left thalamus

  -   seg value: 3
      seg name: "Cerebro-Spinal Fluid"
      synthseg_labels:
        - CSF
        - fluid inside eyes
        - 3rd ventricle
        - 4th ventricle 
        - 5th ventricle
        - left lateral ventricle
        - right lateral ventricle
        - right inferior lateral ventricle
        - left inferior lateral ventricle
        - right choroid plexus
        - left choroid plexus
        - right vessel
        - left vessel

# - # Add new regions here

# TO ADD A NEW REGION
# Copy paste the following lines, uncomment and edit it
# 0000000000000000
#  - seg value: 1 # uint8; voxel value of the nifti segmentation
#    seg name: "White Matter" # str; human readable name for the region
#    synthseg_labels: # all the synthseg anatomical region from above that are part of this region 
#     - brain-stem 
#     - left cerebral white matter
#     - right cerebellum white matter
#     - left cerebellum white matter
#     - right cerebral white matter
# 0000000000000000

# IMPORTANT:
# - seg value need to be unique 
# - a synthseg label cannot be part of 2 different regions yet
# - a list of all synthseg elements is given below
# - synthseg labels are case and charecter sensitive

## BE CAREFUL HERE!
## Values come from Synthseg! 
## Do not edit below this line ##
SYNTHSEG_MAP:
  background : 0
  left cerebral white matter : 2
  left cerebral cortex : 3
  left lateral ventricle : 4
  left cerebellum white matter : 7
  left inferior lateral ventricle: 5
  left cerebellum cortex: 8
  left thalamus : 10
  left caudate : 11
  left putamen : 12
  left pallidum :  13
  3rd ventricle : 14
  4th ventricle : 15
  brain-stem : 16
  left hippocampus : 17
  left amygdala : 18
  left accumbens area : 26
  left ventral DC : 28
  right cerebral white matter : 41
  right cerebral cortex : 42
  right lateral ventricle : 43
  right inferior lateral ventricle: 44 
  right cerebellum white matter : 46
  right cerebellum cortex : 47
  right thalamus : 49
  right caudate : 50
  right putamen : 51
  right pallidum : 52
  right hippocampus : 53
  right amygdala : 54
  right accumbens area : 58
  right ventral DC : 60 
  optic chiasm : 85
  CSF : 24
  fluid inside eyes: 259
  5th ventricle: 72
  right choroid plexus: 63 
  left choroid plexus: 31
  right vessel: 62
  left vessel: 30