IsoQuant: A tool for isoform assignment and quantification for long and barcoded reads
Copyright (c) 2022-2025 University of Helsinki
Copyright (c) 2020-2022 Saint Petersburg State University


IsoQuant is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License, Version 2,
dated June 1991, as published by the Free Software Foundation.

IsoQuant is distributed in the hope that it will be useful, but
WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
General Public License for more details.

You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.

-------------------------------------------------------------------------------

IsoQuant
A tool for transcript discovery, quantification and read-to-isoform assignment for PacBio and Nanopore data
Version: see VERSION

Developed in
Department of Computer Science, University of Helsinki and
Hagen Tilgner Lab, Brain and Mind Research Institute, Weill Cornell Medicine

Previously developed in
Center for Algorithmic Biotechnology, Institute of Translational Biomedicine, St. Petersburg State University

Current contributors:

    Andrey Prjibelski,
    Jack Freeman,
    Arina Coroliuc,
    Lieke Michielsen,
    Careen Foord,
    Alla Mikheenko,
    Rebecca Pfeil,
    Alexandru Tomescu
    and
    Hagen Tilgner

Also contributed:

    Maria Burunducova,
    Anoushka Joglekar,
    Alexander Smetanin,
    Artyom Kaltovich,
    James Webber


Installation instructions and manual can be found on the website:
https://github.com/ablab/IsoQuant

Address for communication: 
isoquant.rna@gmail.com