{ "cells": [ { "cell_type": "markdown", "metadata": {}, "source": [ "# Aestimo Tutorial #4" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "In this tutorial, we are going to model optical intersubband transitions between the conduction subbands of a quantum well. In the conduction band, intersubband transitions only couple to the electric field component across the structure (along the growth direction/perpendicular to the plane of the quantum well etc)[ref]. This means that the medium is anisotropic which leads to interesting properties like a shift in the absorption frequency due to a 'depolarisation shift'[ref] as well as standing wave effects[ref]. I could go on about this for a while [my ref] but instead, let's cut straight to the action.\n", "\n", "First we will model a 'normal' quantum well structure" ] }, { "cell_type": "code", "execution_count": 1, "metadata": {}, "outputs": [ { "name": "stderr", "output_type": "stream", "text": [ "WARNING aestimo logs automatically to aestimo.log in the current working directory.\n", "INFO using psi_at_inf_cython module\n", "WARNING aestimo_eh logs automatically to aestimo.log in the current working directory.\n" ] } ], "source": [ "import aestimo.aestimo as solver\n", "import aestimo.config as ac\n", "ac.messagesoff = True # turn off logging in order to keep notebook from being flooded with messages.\n", "import aestimo.database as adatabase\n", "import numpy as np\n", "import matplotlib.pyplot as plt\n", "import copy\n", "from pprint import pprint\n", "%matplotlib notebook" ] }, { "cell_type": "code", "execution_count": 2, "metadata": {}, "outputs": [], "source": [ "class Structure(object): pass\n", "s1 = Structure() # this will be our datastructure\n", "\n", "# TEMPERATURE\n", "s1.T = 15.0 #Kelvin\n", "\n", "# COMPUTATIONAL SCHEME\n", "# 0: Schrodinger\n", "# 1: Schrodinger + nonparabolicity\n", "# 2: Schrodinger-Poisson\n", "# 3: Schrodinger-Poisson with nonparabolicity\n", "# 4: Schrodinger-Exchange interaction\n", "# 5: Schrodinger-Poisson + Exchange interaction\n", "# 6: Schrodinger-Poisson + Exchange interaction with nonparabolicity\n", "s1.computation_scheme = 6\n", "\n", "# Non-parabolic effective mass function\n", "# 0: no energy dependence\n", "# 1: Nelson's effective 2-band model\n", "# 2: k.p model from Vurgaftman's 2001 paper\n", "s1.meff_method = 2\n", "\n", "# Non-parabolic Dispersion Calculations for Fermi-Dirac\n", "s1.fermi_np_scheme = True #needed only for aestimo_numpy2.py\n", "\n", "# QUANTUM\n", "# Total subband number to be calculated for electrons\n", "s1.subnumber_e = 3\n", "\n", "# APPLIED ELECTRIC FIELD\n", "s1.Fapplied = 0.00 # (V/m)\n", "\n", "# GRID\n", "# For 1D, z-axis is choosen\n", "s1.gridfactor = 0.1 #nm\n", "s1.maxgridpoints = 200000 #for controlling the size\n", "\n", "# REGIONS\n", "# Region input is a two-dimensional list input.\n", "# | Thickness (nm) | Material | Alloy fraction | Doping(cm^-3) | n or p type |\n", "s1.material =[\n", " [ 20.0, 'AlGaAs', 0.3, 0.0, 'n'],\n", " [ 11.0, 'GaAs', 0, 2e18, 'n'],\n", " [ 20.0, 'AlGaAs', 0.3, 0.0, 'n'],\n", " ]\n", "\n", "structure1 = s1" ] }, { "cell_type": "code", "execution_count": 3, "metadata": {}, "outputs": [ { "name": "stderr", "output_type": "stream", "text": [ "INFO Total layer number: 3\n", "INFO Total number of materials in database: 23\n", "WARNING The calculation of Vxc depends upon m*, however when non-parabolicity is also \n", " considered m* becomes energy dependent which would make Vxc energy dependent.\n", " Currently this effect is ignored and Vxc uses the effective masses from the \n", " bottom of the conduction bands even when non-parabolicity is considered \n", " elsewhere.\n", "INFO calculation time 3.39166 s\n" ] }, { "data": { "application/javascript": [ "/* Put everything inside the global mpl namespace */\n", "window.mpl = {};\n", "\n", "\n", "mpl.get_websocket_type = function() {\n", " if (typeof(WebSocket) !== 'undefined') {\n", " return WebSocket;\n", " } else if (typeof(MozWebSocket) !== 'undefined') {\n", " return MozWebSocket;\n", " } else {\n", " alert('Your browser does not have WebSocket support.' +\n", " 'Please try Chrome, Safari or Firefox ≥ 6. ' +\n", " 'Firefox 4 and 5 are also supported but you ' +\n", " 'have to enable WebSockets in about:config.');\n", " };\n", "}\n", "\n", "mpl.figure = function(figure_id, websocket, ondownload, parent_element) {\n", " this.id = figure_id;\n", "\n", " this.ws = websocket;\n", "\n", " this.supports_binary = (this.ws.binaryType != undefined);\n", "\n", " if (!this.supports_binary) {\n", " var warnings = document.getElementById(\"mpl-warnings\");\n", " if (warnings) {\n", " warnings.style.display = 'block';\n", " warnings.textContent = (\n", " \"This browser does not support binary websocket messages. \" +\n", " \"Performance may be slow.\");\n", " }\n", " }\n", "\n", " this.imageObj = new Image();\n", "\n", " this.context = undefined;\n", " this.message = undefined;\n", " this.canvas = undefined;\n", " this.rubberband_canvas = undefined;\n", " this.rubberband_context = undefined;\n", " this.format_dropdown = undefined;\n", "\n", " this.image_mode = 'full';\n", "\n", " this.root = $('
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clear: both; outline: 0');\n", "\n", " function canvas_keyboard_event(event) {\n", " return fig.key_event(event, event['data']);\n", " }\n", "\n", " canvas_div.keydown('key_press', canvas_keyboard_event);\n", " canvas_div.keyup('key_release', canvas_keyboard_event);\n", " this.canvas_div = canvas_div\n", " this._canvas_extra_style(canvas_div)\n", " this.root.append(canvas_div);\n", "\n", " var canvas = $('');\n", " canvas.addClass('mpl-canvas');\n", " canvas.attr('style', \"left: 0; top: 0; z-index: 0; outline: 0\")\n", "\n", " this.canvas = canvas[0];\n", " this.context = canvas[0].getContext(\"2d\");\n", "\n", " var backingStore = this.context.backingStorePixelRatio ||\n", "\tthis.context.webkitBackingStorePixelRatio ||\n", "\tthis.context.mozBackingStorePixelRatio ||\n", "\tthis.context.msBackingStorePixelRatio ||\n", "\tthis.context.oBackingStorePixelRatio ||\n", "\tthis.context.backingStorePixelRatio || 1;\n", "\n", " mpl.ratio = (window.devicePixelRatio || 1) / backingStore;\n", "\n", " var rubberband = $('');\n", " rubberband.attr('style', \"position: absolute; left: 0; top: 0; z-index: 1;\")\n", "\n", " var pass_mouse_events = true;\n", "\n", " canvas_div.resizable({\n", " start: function(event, ui) {\n", " pass_mouse_events = false;\n", " },\n", " resize: function(event, ui) {\n", " fig.request_resize(ui.size.width, ui.size.height);\n", " },\n", " stop: function(event, ui) {\n", " pass_mouse_events = true;\n", " fig.request_resize(ui.size.width, ui.size.height);\n", " },\n", " });\n", "\n", " function mouse_event_fn(event) {\n", " if (pass_mouse_events)\n", " return fig.mouse_event(event, event['data']);\n", " }\n", "\n", " rubberband.mousedown('button_press', mouse_event_fn);\n", " rubberband.mouseup('button_release', mouse_event_fn);\n", " // Throttle sequential mouse events to 1 every 20ms.\n", " rubberband.mousemove('motion_notify', mouse_event_fn);\n", "\n", " rubberband.mouseenter('figure_enter', mouse_event_fn);\n", " rubberband.mouseleave('figure_leave', mouse_event_fn);\n", "\n", " canvas_div.on(\"wheel\", function (event) {\n", " event = event.originalEvent;\n", " event['data'] = 'scroll'\n", " if (event.deltaY < 0) {\n", " event.step = 1;\n", " } else {\n", " event.step = -1;\n", " }\n", " mouse_event_fn(event);\n", " });\n", "\n", " canvas_div.append(canvas);\n", " canvas_div.append(rubberband);\n", "\n", " this.rubberband = rubberband;\n", " this.rubberband_canvas = rubberband[0];\n", " this.rubberband_context = rubberband[0].getContext(\"2d\");\n", " this.rubberband_context.strokeStyle = \"#000000\";\n", "\n", " this._resize_canvas = function(width, height) {\n", " // Keep the size of the canvas, canvas container, and rubber band\n", " // canvas in synch.\n", " canvas_div.css('width', width)\n", " canvas_div.css('height', height)\n", "\n", " canvas.attr('width', width * mpl.ratio);\n", " canvas.attr('height', height * mpl.ratio);\n", " canvas.attr('style', 'width: ' + width + 'px; height: ' + height + 'px;');\n", "\n", " rubberband.attr('width', width);\n", " rubberband.attr('height', height);\n", " }\n", "\n", " // Set the figure to an initial 600x600px, this will subsequently be updated\n", " // upon first draw.\n", " this._resize_canvas(600, 600);\n", "\n", " // Disable right mouse context menu.\n", " $(this.rubberband_canvas).bind(\"contextmenu\",function(e){\n", " return false;\n", " });\n", "\n", " function set_focus () {\n", " canvas.focus();\n", " canvas_div.focus();\n", " }\n", "\n", " window.setTimeout(set_focus, 100);\n", "}\n", "\n", "mpl.figure.prototype._init_toolbar = function() {\n", " var fig = this;\n", "\n", " var nav_element = $('')\n", " nav_element.attr('style', 'width: 100%');\n", " this.root.append(nav_element);\n", "\n", " // Define a callback function for later on.\n", " function toolbar_event(event) {\n", " return fig.toolbar_button_onclick(event['data']);\n", " }\n", " function toolbar_mouse_event(event) {\n", " return fig.toolbar_button_onmouseover(event['data']);\n", " }\n", "\n", " for(var toolbar_ind in mpl.toolbar_items) {\n", " var name = mpl.toolbar_items[toolbar_ind][0];\n", " var tooltip = mpl.toolbar_items[toolbar_ind][1];\n", " var image = mpl.toolbar_items[toolbar_ind][2];\n", " var method_name = mpl.toolbar_items[toolbar_ind][3];\n", "\n", " if (!name) {\n", " // put a spacer in here.\n", " continue;\n", " }\n", " var button = $('');\n", " button.addClass('ui-button ui-widget ui-state-default ui-corner-all ' +\n", " 'ui-button-icon-only');\n", " button.attr('role', 'button');\n", " button.attr('aria-disabled', 'false');\n", " button.click(method_name, toolbar_event);\n", " button.mouseover(tooltip, toolbar_mouse_event);\n", "\n", " var icon_img = $('');\n", " icon_img.addClass('ui-button-icon-primary ui-icon');\n", " icon_img.addClass(image);\n", " icon_img.addClass('ui-corner-all');\n", "\n", " var tooltip_span = $('');\n", " tooltip_span.addClass('ui-button-text');\n", " tooltip_span.html(tooltip);\n", "\n", " button.append(icon_img);\n", " button.append(tooltip_span);\n", "\n", " nav_element.append(button);\n", " }\n", "\n", " var fmt_picker_span = $('');\n", "\n", " var fmt_picker = $('');\n", " fmt_picker.addClass('mpl-toolbar-option ui-widget ui-widget-content');\n", " fmt_picker_span.append(fmt_picker);\n", " nav_element.append(fmt_picker_span);\n", " this.format_dropdown = fmt_picker[0];\n", "\n", " for (var ind in mpl.extensions) {\n", " var fmt = mpl.extensions[ind];\n", " var option = $(\n", " '', {selected: fmt === mpl.default_extension}).html(fmt);\n", " fmt_picker.append(option)\n", " }\n", "\n", " // Add hover states to the ui-buttons\n", " $( \".ui-button\" ).hover(\n", " function() { $(this).addClass(\"ui-state-hover\");},\n", " function() { $(this).removeClass(\"ui-state-hover\");}\n", " );\n", "\n", " var status_bar = $('');\n", " nav_element.append(status_bar);\n", " this.message = status_bar[0];\n", "}\n", "\n", "mpl.figure.prototype.request_resize = function(x_pixels, y_pixels) {\n", " // Request matplotlib to resize the figure. Matplotlib will then trigger a resize in the client,\n", " // which will in turn request a refresh of the image.\n", " this.send_message('resize', {'width': x_pixels, 'height': y_pixels});\n", "}\n", "\n", "mpl.figure.prototype.send_message = function(type, properties) {\n", " properties['type'] = type;\n", " properties['figure_id'] = this.id;\n", " this.ws.send(JSON.stringify(properties));\n", "}\n", "\n", "mpl.figure.prototype.send_draw_message = function() {\n", " if (!this.waiting) {\n", " this.waiting = true;\n", " this.ws.send(JSON.stringify({type: \"draw\", figure_id: this.id}));\n", " }\n", "}\n", "\n", "\n", "mpl.figure.prototype.handle_save = function(fig, msg) {\n", " var format_dropdown = fig.format_dropdown;\n", " var format = format_dropdown.options[format_dropdown.selectedIndex].value;\n", " fig.ondownload(fig, format);\n", "}\n", "\n", "\n", "mpl.figure.prototype.handle_resize = function(fig, msg) {\n", " var size = msg['size'];\n", " if (size[0] != fig.canvas.width || size[1] != fig.canvas.height) {\n", " fig._resize_canvas(size[0], size[1]);\n", " fig.send_message(\"refresh\", {});\n", " };\n", "}\n", "\n", "mpl.figure.prototype.handle_rubberband = function(fig, msg) {\n", " var x0 = msg['x0'] / mpl.ratio;\n", " var y0 = (fig.canvas.height - msg['y0']) / mpl.ratio;\n", " var x1 = msg['x1'] / mpl.ratio;\n", " var y1 = (fig.canvas.height - msg['y1']) / mpl.ratio;\n", " x0 = Math.floor(x0) + 0.5;\n", " y0 = Math.floor(y0) + 0.5;\n", " x1 = Math.floor(x1) + 0.5;\n", " y1 = Math.floor(y1) + 0.5;\n", " var min_x = Math.min(x0, x1);\n", " var min_y = Math.min(y0, y1);\n", " var width = Math.abs(x1 - x0);\n", " var height = Math.abs(y1 - y0);\n", "\n", " fig.rubberband_context.clearRect(\n", " 0, 0, fig.canvas.width, fig.canvas.height);\n", "\n", " fig.rubberband_context.strokeRect(min_x, min_y, width, height);\n", "}\n", "\n", "mpl.figure.prototype.handle_figure_label = function(fig, msg) {\n", " // Updates the figure title.\n", " fig.header.textContent = msg['label'];\n", "}\n", "\n", "mpl.figure.prototype.handle_cursor = function(fig, msg) {\n", " var cursor = msg['cursor'];\n", " switch(cursor)\n", " {\n", " case 0:\n", " cursor = 'pointer';\n", " break;\n", " case 1:\n", " cursor = 'default';\n", " break;\n", " case 2:\n", " cursor = 'crosshair';\n", " break;\n", " case 3:\n", " cursor = 'move';\n", " break;\n", " }\n", " fig.rubberband_canvas.style.cursor = cursor;\n", "}\n", "\n", "mpl.figure.prototype.handle_message = function(fig, msg) {\n", " fig.message.textContent = msg['message'];\n", "}\n", "\n", "mpl.figure.prototype.handle_draw = function(fig, msg) {\n", " // Request the server to send over a new figure.\n", " fig.send_draw_message();\n", "}\n", "\n", "mpl.figure.prototype.handle_image_mode = function(fig, msg) {\n", " fig.image_mode = msg['mode'];\n", "}\n", "\n", "mpl.figure.prototype.updated_canvas_event = function() {\n", " // Called whenever the canvas gets updated.\n", " this.send_message(\"ack\", {});\n", "}\n", "\n", "// A function to construct a web socket function for onmessage handling.\n", "// Called in the figure constructor.\n", "mpl.figure.prototype._make_on_message_function = function(fig) {\n", " return function socket_on_message(evt) {\n", " if (evt.data instanceof Blob) {\n", " /* FIXME: We get \"Resource interpreted as Image but\n", " * transferred with MIME type text/plain:\" errors on\n", " * Chrome. But how to set the MIME type? It doesn't seem\n", " * to be part of the websocket stream */\n", " evt.data.type = \"image/png\";\n", "\n", " /* Free the memory for the previous frames */\n", " if (fig.imageObj.src) {\n", " (window.URL || window.webkitURL).revokeObjectURL(\n", " fig.imageObj.src);\n", " }\n", "\n", " fig.imageObj.src = (window.URL || window.webkitURL).createObjectURL(\n", " evt.data);\n", " fig.updated_canvas_event();\n", " fig.waiting = false;\n", " return;\n", " }\n", " else if (typeof evt.data === 'string' && evt.data.slice(0, 21) == \"data:image/png;base64\") {\n", " fig.imageObj.src = evt.data;\n", " fig.updated_canvas_event();\n", " fig.waiting = false;\n", " return;\n", " }\n", "\n", " var msg = JSON.parse(evt.data);\n", " var msg_type = msg['type'];\n", "\n", " // Call the \"handle_{type}\" callback, which takes\n", " // the figure and JSON message as its only arguments.\n", " try {\n", " var callback = fig[\"handle_\" + msg_type];\n", " } catch (e) {\n", " console.log(\"No handler for the '\" + msg_type + \"' message type: \", msg);\n", " return;\n", " }\n", "\n", " if (callback) {\n", " try {\n", " // console.log(\"Handling '\" + msg_type + \"' message: \", msg);\n", " callback(fig, msg);\n", " } catch (e) {\n", " console.log(\"Exception inside the 'handler_\" + msg_type + \"' callback:\", e, e.stack, msg);\n", " }\n", " }\n", " };\n", "}\n", "\n", "// from http://stackoverflow.com/questions/1114465/getting-mouse-location-in-canvas\n", "mpl.findpos = function(e) {\n", " //this section is from http://www.quirksmode.org/js/events_properties.html\n", " var targ;\n", " if (!e)\n", " e = window.event;\n", " if (e.target)\n", " targ = e.target;\n", " else if (e.srcElement)\n", " targ = e.srcElement;\n", " if (targ.nodeType == 3) // defeat Safari bug\n", " targ = targ.parentNode;\n", "\n", " // jQuery normalizes the pageX and pageY\n", " // pageX,Y are the mouse positions relative to the document\n", " // offset() returns the position of the element relative to the document\n", " var x = e.pageX - $(targ).offset().left;\n", " var y = e.pageY - $(targ).offset().top;\n", "\n", " return {\"x\": x, \"y\": y};\n", "};\n", "\n", "/*\n", " * return a copy of an object with only non-object keys\n", " * we need this to avoid circular references\n", " * http://stackoverflow.com/a/24161582/3208463\n", " */\n", "function simpleKeys (original) {\n", " return Object.keys(original).reduce(function (obj, key) {\n", " if (typeof original[key] !== 'object')\n", " obj[key] = original[key]\n", " return obj;\n", " }, {});\n", "}\n", "\n", "mpl.figure.prototype.mouse_event = function(event, name) {\n", " var canvas_pos = mpl.findpos(event)\n", "\n", " if (name === 'button_press')\n", " {\n", " this.canvas.focus();\n", " this.canvas_div.focus();\n", " }\n", "\n", " var x = canvas_pos.x * mpl.ratio;\n", " var y = canvas_pos.y * mpl.ratio;\n", "\n", " this.send_message(name, {x: x, y: y, button: event.button,\n", " step: event.step,\n", " guiEvent: simpleKeys(event)});\n", "\n", " /* This prevents the web browser from automatically changing to\n", " * the text insertion cursor when the button is pressed. We want\n", " * to control all of the cursor setting manually through the\n", " * 'cursor' event from matplotlib */\n", " event.preventDefault();\n", " return false;\n", "}\n", "\n", "mpl.figure.prototype._key_event_extra = function(event, name) {\n", " // Handle any extra behaviour associated with a key event\n", "}\n", "\n", "mpl.figure.prototype.key_event = function(event, name) {\n", "\n", " // Prevent repeat events\n", " if (name == 'key_press')\n", " {\n", " if (event.which === this._key)\n", " return;\n", " else\n", " this._key = event.which;\n", " }\n", " if (name == 'key_release')\n", " this._key = null;\n", "\n", " var value = '';\n", " if (event.ctrlKey && event.which != 17)\n", " value += \"ctrl+\";\n", " if (event.altKey && event.which != 18)\n", " value += \"alt+\";\n", " if (event.shiftKey && event.which != 16)\n", " value += \"shift+\";\n", "\n", " value += 'k';\n", " value += event.which.toString();\n", "\n", " this._key_event_extra(event, name);\n", "\n", " this.send_message(name, {key: value,\n", " guiEvent: simpleKeys(event)});\n", " return false;\n", "}\n", "\n", "mpl.figure.prototype.toolbar_button_onclick = function(name) {\n", " if (name == 'download') {\n", " this.handle_save(this, null);\n", " } else {\n", " this.send_message(\"toolbar_button\", {name: name});\n", " }\n", "};\n", "\n", "mpl.figure.prototype.toolbar_button_onmouseover = function(tooltip) {\n", " this.message.textContent = tooltip;\n", "};\n", "mpl.toolbar_items = [[\"Home\", \"Reset original view\", \"fa fa-home icon-home\", \"home\"], [\"Back\", \"Back to previous view\", \"fa fa-arrow-left icon-arrow-left\", \"back\"], [\"Forward\", \"Forward to next view\", \"fa fa-arrow-right icon-arrow-right\", \"forward\"], [\"\", \"\", \"\", \"\"], [\"Pan\", \"Pan axes with left mouse, zoom with right\", \"fa fa-arrows icon-move\", \"pan\"], [\"Zoom\", \"Zoom to rectangle\", \"fa fa-square-o icon-check-empty\", \"zoom\"], [\"\", \"\", \"\", \"\"], [\"Download\", \"Download plot\", \"fa fa-floppy-o icon-save\", \"download\"]];\n", "\n", "mpl.extensions = [\"eps\", \"jpeg\", \"pdf\", \"png\", \"ps\", \"raw\", \"svg\", \"tif\"];\n", "\n", "mpl.default_extension = \"png\";var comm_websocket_adapter = function(comm) {\n", " // Create a \"websocket\"-like object which calls the given IPython comm\n", " // object with the appropriate methods. Currently this is a non binary\n", " // socket, so there is still some room for performance tuning.\n", " var ws = {};\n", "\n", " ws.close = function() {\n", " comm.close()\n", " };\n", " ws.send = function(m) {\n", " //console.log('sending', m);\n", " comm.send(m);\n", " };\n", " // Register the callback with on_msg.\n", " comm.on_msg(function(msg) {\n", " //console.log('receiving', msg['content']['data'], msg);\n", " // Pass the mpl event to the overriden (by mpl) onmessage function.\n", " ws.onmessage(msg['content']['data'])\n", " });\n", " return ws;\n", "}\n", "\n", "mpl.mpl_figure_comm = function(comm, msg) {\n", " // This is the function which gets called when the mpl process\n", " // starts-up an IPython Comm through the \"matplotlib\" channel.\n", "\n", " var id = msg.content.data.id;\n", " // Get hold of the div created by the display call when the Comm\n", " // socket was opened in Python.\n", " var element = $(\"#\" + id);\n", " var ws_proxy = comm_websocket_adapter(comm)\n", "\n", " function ondownload(figure, format) {\n", " window.open(figure.imageObj.src);\n", " }\n", "\n", " var fig = new mpl.figure(id, ws_proxy,\n", " ondownload,\n", " element.get(0));\n", "\n", " // Call onopen now - mpl needs it, as it is assuming we've passed it a real\n", " // web socket which is closed, not our websocket->open comm proxy.\n", " ws_proxy.onopen();\n", "\n", " fig.parent_element = element.get(0);\n", " fig.cell_info = mpl.find_output_cell(\"\");\n", " if (!fig.cell_info) {\n", " console.error(\"Failed to find cell for figure\", id, fig);\n", " return;\n", " }\n", "\n", " var output_index = fig.cell_info[2]\n", " var cell = fig.cell_info[0];\n", "\n", "};\n", "\n", "mpl.figure.prototype.handle_close = function(fig, msg) {\n", " var width = fig.canvas.width/mpl.ratio\n", " fig.root.unbind('remove')\n", "\n", " // Update the output cell to use the data from the current canvas.\n", " fig.push_to_output();\n", " var dataURL = fig.canvas.toDataURL();\n", " // Re-enable the keyboard manager in IPython - without this line, in FF,\n", " // the notebook keyboard shortcuts fail.\n", " IPython.keyboard_manager.enable()\n", " $(fig.parent_element).html('');\n", " fig.close_ws(fig, msg);\n", "}\n", "\n", "mpl.figure.prototype.close_ws = function(fig, msg){\n", " fig.send_message('closing', msg);\n", " // fig.ws.close()\n", "}\n", "\n", "mpl.figure.prototype.push_to_output = function(remove_interactive) {\n", " // Turn the data on the canvas into data in the output cell.\n", " var width = this.canvas.width/mpl.ratio\n", " var dataURL = this.canvas.toDataURL();\n", " this.cell_info[1]['text/html'] = '';\n", "}\n", "\n", "mpl.figure.prototype.updated_canvas_event = function() {\n", " // Tell IPython that the notebook contents must change.\n", " IPython.notebook.set_dirty(true);\n", " this.send_message(\"ack\", {});\n", " var fig = this;\n", " // Wait a second, then push the new image to the DOM so\n", " // that it is saved nicely (might be nice to debounce this).\n", " setTimeout(function () { fig.push_to_output() }, 1000);\n", "}\n", "\n", "mpl.figure.prototype._init_toolbar = function() {\n", " var fig = this;\n", "\n", " var nav_element = $('')\n", " nav_element.attr('style', 'width: 100%');\n", " this.root.append(nav_element);\n", "\n", " // Define a callback function for later on.\n", " function toolbar_event(event) {\n", " return fig.toolbar_button_onclick(event['data']);\n", " }\n", " function toolbar_mouse_event(event) {\n", " return fig.toolbar_button_onmouseover(event['data']);\n", " }\n", "\n", " for(var toolbar_ind in mpl.toolbar_items){\n", " var name = mpl.toolbar_items[toolbar_ind][0];\n", " var tooltip = mpl.toolbar_items[toolbar_ind][1];\n", " var image = mpl.toolbar_items[toolbar_ind][2];\n", " var method_name = mpl.toolbar_items[toolbar_ind][3];\n", "\n", " if (!name) { continue; };\n", "\n", " var button = $('');\n", " button.click(method_name, toolbar_event);\n", " button.mouseover(tooltip, toolbar_mouse_event);\n", " nav_element.append(button);\n", " }\n", "\n", " // Add the status bar.\n", " var status_bar = $('');\n", " nav_element.append(status_bar);\n", " this.message = status_bar[0];\n", "\n", " // Add the close button to the window.\n", " var buttongrp = $('');\n", " var button = $('');\n", " button.click(function (evt) { fig.handle_close(fig, {}); } );\n", " button.mouseover('Stop Interaction', toolbar_mouse_event);\n", " buttongrp.append(button);\n", " var titlebar = this.root.find($('.ui-dialog-titlebar'));\n", " titlebar.prepend(buttongrp);\n", "}\n", "\n", "mpl.figure.prototype._root_extra_style = function(el){\n", " var fig = this\n", " el.on(\"remove\", function(){\n", "\tfig.close_ws(fig, {});\n", " });\n", "}\n", "\n", "mpl.figure.prototype._canvas_extra_style = function(el){\n", " // this is important to make the div 'focusable\n", " el.attr('tabindex', 0)\n", " // reach out to IPython and tell the keyboard manager to turn it's self\n", " // off when our div gets focus\n", "\n", " // location in version 3\n", " if (IPython.notebook.keyboard_manager) {\n", " IPython.notebook.keyboard_manager.register_events(el);\n", " }\n", " else {\n", " // location in version 2\n", " IPython.keyboard_manager.register_events(el);\n", " }\n", "\n", "}\n", "\n", "mpl.figure.prototype._key_event_extra = function(event, name) {\n", " var manager = IPython.notebook.keyboard_manager;\n", " if (!manager)\n", " manager = IPython.keyboard_manager;\n", "\n", " // Check for shift+enter\n", " if (event.shiftKey && event.which == 13) {\n", " this.canvas_div.blur();\n", " // select the cell after this one\n", " var index = IPython.notebook.find_cell_index(this.cell_info[0]);\n", " IPython.notebook.select(index + 1);\n", " }\n", "}\n", "\n", "mpl.figure.prototype.handle_save = function(fig, msg) {\n", " fig.ondownload(fig, null);\n", "}\n", "\n", "\n", "mpl.find_output_cell = function(html_output) {\n", " // Return the cell and output element which can be found *uniquely* in the notebook.\n", " // Note - this is a bit hacky, but it is done because the \"notebook_saving.Notebook\"\n", " // IPython event is triggered only after the cells have been serialised, which for\n", " // our purposes (turning an active figure into a static one), is too late.\n", " var cells = IPython.notebook.get_cells();\n", " var ncells = cells.length;\n", " for (var i=0; i