#!/bin/tcsh -f
#################################################
## 11/2017 Justin Rajendra
## launch shiny plot of FATCAT outputs

## get the current program name
set prog = `basename $0`

## find the shiny folder
set afni_bin = `which ${prog}`
set afni_dir = `dirname ${afni_bin}`
set ShinyFolder = "${afni_dir}/shiny/FATCAT_matplot_shiny"
set InFolder = ""

## show help
if ( $#argv < 1 ) then
    goto SHOW_HELP
endif

## parse args
set narg = 1
@  amax = $#argv - 0
while ( $narg <= $amax )
    if ( "$argv[$narg]" == "-help" || "$argv[$narg]" == "-h" ) then
        goto SHOW_HELP
    else if ( "$argv[$narg]" == "-ShinyFolder" ) then
        @ narg ++
        set ShinyFolder = `echo $argv[$narg]`
    else
        set InFolder = `echo $argv[$narg]`
    endif
    @ narg ++
end

## check the inputs
if ( "$InFolder" == "" ) then
    goto SHOW_HELP
endif
if ( ! -d $InFolder ) then
    echo ; echo "Error: ${InFolder} does not exist." ; echo ; exit 1
endif

## get full path for the input folder
cd $InFolder
set corr_dir = `pwd`
cd -

## launch shiny
R --slave --no-restore \
-e "shiny::runApp('${ShinyFolder}', launch.browser=TRUE)" --args $corr_dir &
exit 0

##########################################################################
SHOW_HELP:
cat << EOF

   ----------------------------------------------------------------------------
   $prog
      Launch a shiny app to visualize .netcc and/or .grid files.
      Takes one argument, a path to a folder with said files.
      That path MUST be the last argument!
      May need "@afni_R_package_install -shiny -circos" for R libraries.

   -----------------------------------------------------------------------------
   options:
      -help        : Show this help.
      -ShinyFolder : Use a custom shiny folder (for testing purposes).

   -----------------------------------------------------------------------------
   examples:
      $prog ~/disco_netcc_folder

   -----------------------------------------------------------------------------
   Justin Rajendra 11/2017

EOF

exit 0