{
"cells": [
{
"cell_type": "code",
"execution_count": 2,
"metadata": {},
"outputs": [],
"source": [
"import pandas as pd"
]
},
{
"cell_type": "code",
"execution_count": 3,
"metadata": {},
"outputs": [],
"source": [
"cases = pd.read_csv('./data/WHO-COVID-19-global-data.csv')"
]
},
{
"cell_type": "code",
"execution_count": 4,
"metadata": {},
"outputs": [
{
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" Date_reported Country_code Country WHO_region New_cases \\\n",
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"2 2020-01-05 AF Afghanistan EMRO 0 \n",
"3 2020-01-06 AF Afghanistan EMRO 0 \n",
"4 2020-01-07 AF Afghanistan EMRO 0 \n",
"... ... ... ... ... ... \n",
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"164474 2021-11-23 ZW Zimbabwe AFRO 27 \n",
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"164476 2021-11-25 ZW Zimbabwe AFRO 40 \n",
"164477 2021-11-26 ZW Zimbabwe AFRO 27 \n",
"\n",
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"3 0 0 0 \n",
"4 0 0 0 \n",
"... ... ... ... \n",
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"\n",
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},
"execution_count": 4,
"metadata": {},
"output_type": "execute_result"
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],
"source": [
"cases"
]
},
{
"cell_type": "code",
"execution_count": 5,
"metadata": {},
"outputs": [
{
"data": {
"text/plain": [
"array(['EMRO', 'EURO', 'AFRO', 'WPRO', 'AMRO', 'SEARO', 'Other'],\n",
" dtype=object)"
]
},
"execution_count": 5,
"metadata": {},
"output_type": "execute_result"
}
],
"source": [
"cases.WHO_region.unique()"
]
},
{
"cell_type": "code",
"execution_count": 6,
"metadata": {},
"outputs": [
{
"data": {
"text/plain": [
"array(['Anguilla', 'Antigua and Barbuda', 'Argentina', 'Aruba', 'Bahamas',\n",
" 'Barbados', 'Belize', 'Bermuda',\n",
" 'Bolivia (Plurinational State of)', 'Bonaire', 'Brazil',\n",
" 'British Virgin Islands', 'Canada', 'Cayman Islands', 'Chile',\n",
" 'Colombia', 'Costa Rica', 'Cuba', 'Curaçao', 'Dominica',\n",
" 'Dominican Republic', 'Ecuador', 'El Salvador',\n",
" 'Falkland Islands (Malvinas)', 'French Guiana', 'Grenada',\n",
" 'Guadeloupe', 'Guatemala', 'Guyana', 'Haiti', 'Honduras',\n",
" 'Jamaica', 'Martinique', 'Mexico', 'Montserrat', 'Nicaragua',\n",
" 'Panama', 'Paraguay', 'Peru', 'Puerto Rico', 'Saba',\n",
" 'Saint Barthélemy', 'Saint Kitts and Nevis', 'Saint Lucia',\n",
" 'Saint Martin', 'Saint Pierre and Miquelon',\n",
" 'Saint Vincent and the Grenadines', 'Sint Eustatius',\n",
" 'Sint Maarten', 'Suriname', 'Trinidad and Tobago',\n",
" 'Turks and Caicos Islands', 'United States of America',\n",
" 'United States Virgin Islands', 'Uruguay',\n",
" 'Venezuela (Bolivarian Republic of)'], dtype=object)"
]
},
"execution_count": 6,
"metadata": {},
"output_type": "execute_result"
}
],
"source": [
"cases.loc[cases.WHO_region == 'AMRO'].Country.unique()"
]
},
{
"cell_type": "code",
"execution_count": 7,
"metadata": {},
"outputs": [
{
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" Date_reported Country_code Country WHO_region \\\n",
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"source": [
"cases.loc[cases.Country == 'United States of America']"
]
},
{
"cell_type": "code",
"execution_count": 8,
"metadata": {},
"outputs": [
{
"name": "stderr",
"output_type": "stream",
"text": [
"/home/alexkeeney/anaconda3/envs/bs/lib/python3.8/site-packages/pandas/core/frame.py:3607: SettingWithCopyWarning: \n",
"A value is trying to be set on a copy of a slice from a DataFrame.\n",
"Try using .loc[row_indexer,col_indexer] = value instead\n",
"\n",
"See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy\n",
" self._set_item(key, value)\n"
]
}
],
"source": [
"us = cases.loc[cases.Country == 'United States of America']\n",
"us.Date_reported = pd.to_datetime(us.Date_reported, format = '%Y-%m-%d')"
]
},
{
"cell_type": "code",
"execution_count": 9,
"metadata": {},
"outputs": [
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" Date_reported Country_code Country WHO_region \\\n",
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"157536 2021-11-25 US United States of America AMRO \n",
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"\n",
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]
},
"execution_count": 9,
"metadata": {},
"output_type": "execute_result"
}
],
"source": [
"us"
]
},
{
"cell_type": "code",
"execution_count": 10,
"metadata": {},
"outputs": [],
"source": [
"import altair as alt"
]
},
{
"cell_type": "code",
"execution_count": 11,
"metadata": {},
"outputs": [
{
"data": {
"text/html": [
"\n",
"<div id=\"altair-viz-45aa5732d8dc44469d11c0c8d173d345\"></div>\n",
"<script type=\"text/javascript\">\n",
" (function(spec, embedOpt){\n",
" let outputDiv = document.currentScript.previousElementSibling;\n",
" if (outputDiv.id !== \"altair-viz-45aa5732d8dc44469d11c0c8d173d345\") {\n",
" outputDiv = document.getElementById(\"altair-viz-45aa5732d8dc44469d11c0c8d173d345\");\n",
" }\n",
" const paths = {\n",
" \"vega\": \"https://cdn.jsdelivr.net/npm//vega@5?noext\",\n",
" \"vega-lib\": \"https://cdn.jsdelivr.net/npm//vega-lib?noext\",\n",
" \"vega-lite\": \"https://cdn.jsdelivr.net/npm//vega-lite@4.8.1?noext\",\n",
" \"vega-embed\": \"https://cdn.jsdelivr.net/npm//vega-embed@6?noext\",\n",
" };\n",
"\n",
" function loadScript(lib) {\n",
" return new Promise(function(resolve, reject) {\n",
" var s = document.createElement('script');\n",
" s.src = paths[lib];\n",
" s.async = true;\n",
" s.onload = () => resolve(paths[lib]);\n",
" s.onerror = () => reject(`Error loading script: ${paths[lib]}`);\n",
" document.getElementsByTagName(\"head\")[0].appendChild(s);\n",
" });\n",
" }\n",
"\n",
" function showError(err) {\n",
" outputDiv.innerHTML = `<div class=\"error\" style=\"color:red;\">${err}</div>`;\n",
" throw err;\n",
" }\n",
"\n",
" function displayChart(vegaEmbed) {\n",
" vegaEmbed(outputDiv, spec, embedOpt)\n",
" .catch(err => showError(`Javascript Error: ${err.message}<br>This usually means there's a typo in your chart specification. See the javascript console for the full traceback.`));\n",
" }\n",
"\n",
" if(typeof define === \"function\" && define.amd) {\n",
" requirejs.config({paths});\n",
" require([\"vega-embed\"], displayChart, err => showError(`Error loading script: ${err.message}`));\n",
" } else if (typeof vegaEmbed === \"function\") {\n",
" displayChart(vegaEmbed);\n",
" } else {\n",
" loadScript(\"vega\")\n",
" .then(() => loadScript(\"vega-lite\"))\n",
" .then(() => loadScript(\"vega-embed\"))\n",
" .catch(showError)\n",
" .then(() => displayChart(vegaEmbed));\n",
" }\n",
" })({\"config\": {\"view\": {\"continuousWidth\": 400, \"continuousHeight\": 300}}, \"data\": {\"name\": \"data-72f6571975d4b7dc99652eca9c899744\"}, \"mark\": \"line\", \"encoding\": {\"x\": {\"type\": \"temporal\", \"field\": \"Date_reported\"}, \"y\": {\"type\": \"quantitative\", \"field\": \"New_cases\"}}, \"$schema\": \"https://vega.github.io/schema/vega-lite/v4.8.1.json\", \"datasets\": {\"data-72f6571975d4b7dc99652eca9c899744\": [{\"Date_reported\": \"2020-01-03T00:00:00\", \"Country_code\": \"US\", \"Country\": \"United States of America\", \"WHO_region\": \"AMRO\", \"New_cases\": 0, \"Cumulative_cases\": 0, \"New_deaths\": 0, \"Cumulative_deaths\": 0}, {\"Date_reported\": \"2020-01-04T00:00:00\", \"Country_code\": \"US\", \"Country\": \"United States of America\", \"WHO_region\": \"AMRO\", \"New_cases\": 0, \"Cumulative_cases\": 0, \"New_deaths\": 0, \"Cumulative_deaths\": 0}, {\"Date_reported\": \"2020-01-05T00:00:00\", \"Country_code\": \"US\", \"Country\": \"United States 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\"2020-01-14T00:00:00\", \"Country_code\": \"US\", \"Country\": \"United States of America\", \"WHO_region\": \"AMRO\", \"New_cases\": 0, \"Cumulative_cases\": 0, \"New_deaths\": 0, \"Cumulative_deaths\": 0}, {\"Date_reported\": \"2020-01-15T00:00:00\", \"Country_code\": \"US\", \"Country\": \"United States of America\", \"WHO_region\": \"AMRO\", \"New_cases\": 0, \"Cumulative_cases\": 0, \"New_deaths\": 0, \"Cumulative_deaths\": 0}, {\"Date_reported\": \"2020-01-16T00:00:00\", \"Country_code\": \"US\", \"Country\": \"United States of America\", \"WHO_region\": \"AMRO\", \"New_cases\": 0, \"Cumulative_cases\": 0, \"New_deaths\": 0, \"Cumulative_deaths\": 0}, {\"Date_reported\": \"2020-01-17T00:00:00\", \"Country_code\": \"US\", \"Country\": \"United States of America\", \"WHO_region\": \"AMRO\", \"New_cases\": 0, \"Cumulative_cases\": 0, \"New_deaths\": 0, \"Cumulative_deaths\": 0}, {\"Date_reported\": \"2020-01-18T00:00:00\", \"Country_code\": \"US\", \"Country\": \"United States of America\", \"WHO_region\": \"AMRO\", \"New_cases\": 0, \"Cumulative_cases\": 0, \"New_deaths\": 0, \"Cumulative_deaths\": 0}, {\"Date_reported\": \"2020-01-19T00:00:00\", \"Country_code\": \"US\", \"Country\": \"United States of America\", \"WHO_region\": \"AMRO\", \"New_cases\": 0, \"Cumulative_cases\": 0, \"New_deaths\": 0, \"Cumulative_deaths\": 0}, {\"Date_reported\": \"2020-01-20T00:00:00\", \"Country_code\": \"US\", \"Country\": \"United States of America\", \"WHO_region\": \"AMRO\", \"New_cases\": 1, \"Cumulative_cases\": 1, \"New_deaths\": 0, \"Cumulative_deaths\": 0}, {\"Date_reported\": \"2020-01-21T00:00:00\", \"Country_code\": \"US\", \"Country\": \"United States of America\", \"WHO_region\": \"AMRO\", \"New_cases\": 0, \"Cumulative_cases\": 1, \"New_deaths\": 0, \"Cumulative_deaths\": 0}, {\"Date_reported\": \"2020-01-22T00:00:00\", \"Country_code\": \"US\", \"Country\": \"United States of America\", \"WHO_region\": \"AMRO\", \"New_cases\": 0, \"Cumulative_cases\": 1, \"New_deaths\": 0, \"Cumulative_deaths\": 0}, {\"Date_reported\": \"2020-01-23T00:00:00\", \"Country_code\": \"US\", \"Country\": \"United States of America\", \"WHO_region\": \"AMRO\", \"New_cases\": 0, \"Cumulative_cases\": 1, \"New_deaths\": 0, \"Cumulative_deaths\": 0}, {\"Date_reported\": \"2020-01-24T00:00:00\", \"Country_code\": \"US\", \"Country\": \"United States of America\", \"WHO_region\": \"AMRO\", \"New_cases\": 0, \"Cumulative_cases\": 1, \"New_deaths\": 0, \"Cumulative_deaths\": 0}, {\"Date_reported\": \"2020-01-25T00:00:00\", \"Country_code\": \"US\", \"Country\": \"United States of America\", \"WHO_region\": \"AMRO\", \"New_cases\": 0, \"Cumulative_cases\": 1, \"New_deaths\": 0, \"Cumulative_deaths\": 0}, {\"Date_reported\": \"2020-01-26T00:00:00\", \"Country_code\": \"US\", \"Country\": \"United States of America\", \"WHO_region\": \"AMRO\", \"New_cases\": 1, \"Cumulative_cases\": 2, \"New_deaths\": 0, \"Cumulative_deaths\": 0}, {\"Date_reported\": \"2020-01-27T00:00:00\", \"Country_code\": \"US\", \"Country\": \"United States of America\", \"WHO_region\": \"AMRO\", \"New_cases\": 0, \"Cumulative_cases\": 2, \"New_deaths\": 0, \"Cumulative_deaths\": 0}, {\"Date_reported\": \"2020-01-28T00:00:00\", \"Country_code\": \"US\", \"Country\": \"United States of America\", \"WHO_region\": \"AMRO\", \"New_cases\": 1, \"Cumulative_cases\": 3, \"New_deaths\": 0, \"Cumulative_deaths\": 0}, {\"Date_reported\": \"2020-01-29T00:00:00\", \"Country_code\": \"US\", \"Country\": \"United States of America\", \"WHO_region\": \"AMRO\", \"New_cases\": 0, \"Cumulative_cases\": 3, \"New_deaths\": 0, \"Cumulative_deaths\": 0}, {\"Date_reported\": \"2020-01-30T00:00:00\", \"Country_code\": \"US\", \"Country\": \"United States of America\", \"WHO_region\": \"AMRO\", \"New_cases\": 0, \"Cumulative_cases\": 3, \"New_deaths\": 0, \"Cumulative_deaths\": 0}, {\"Date_reported\": \"2020-01-31T00:00:00\", \"Country_code\": \"US\", \"Country\": \"United States of America\", \"WHO_region\": \"AMRO\", \"New_cases\": 0, \"Cumulative_cases\": 3, \"New_deaths\": 0, \"Cumulative_deaths\": 0}, {\"Date_reported\": \"2020-02-01T00:00:00\", \"Country_code\": \"US\", \"Country\": \"United States of America\", \"WHO_region\": \"AMRO\", \"New_cases\": 0, \"Cumulative_cases\": 3, \"New_deaths\": 0, \"Cumulative_deaths\": 0}, {\"Date_reported\": \"2020-02-02T00:00:00\", \"Country_code\": \"US\", \"Country\": \"United States of America\", \"WHO_region\": \"AMRO\", \"New_cases\": 1, \"Cumulative_cases\": 4, \"New_deaths\": 0, \"Cumulative_deaths\": 0}, {\"Date_reported\": \"2020-02-03T00:00:00\", \"Country_code\": \"US\", \"Country\": \"United States of America\", \"WHO_region\": \"AMRO\", \"New_cases\": 1, \"Cumulative_cases\": 5, \"New_deaths\": 0, \"Cumulative_deaths\": 0}, {\"Date_reported\": \"2020-02-04T00:00:00\", \"Country_code\": \"US\", \"Country\": \"United States of America\", \"WHO_region\": \"AMRO\", \"New_cases\": 3, \"Cumulative_cases\": 8, \"New_deaths\": 0, \"Cumulative_deaths\": 0}, {\"Date_reported\": \"2020-02-05T00:00:00\", \"Country_code\": \"US\", \"Country\": \"United States of America\", \"WHO_region\": \"AMRO\", \"New_cases\": 3, \"Cumulative_cases\": 11, \"New_deaths\": 0, \"Cumulative_deaths\": 0}, {\"Date_reported\": \"2020-02-06T00:00:00\", \"Country_code\": \"US\", \"Country\": \"United States of America\", \"WHO_region\": \"AMRO\", \"New_cases\": 0, \"Cumulative_cases\": 11, \"New_deaths\": 0, \"Cumulative_deaths\": 0}, {\"Date_reported\": \"2020-02-07T00:00:00\", \"Country_code\": \"US\", \"Country\": \"United States of America\", \"WHO_region\": \"AMRO\", \"New_cases\": 0, \"Cumulative_cases\": 11, \"New_deaths\": 0, \"Cumulative_deaths\": 0}, {\"Date_reported\": \"2020-02-08T00:00:00\", \"Country_code\": \"US\", \"Country\": \"United States of America\", \"WHO_region\": \"AMRO\", \"New_cases\": 0, \"Cumulative_cases\": 11, \"New_deaths\": 0, \"Cumulative_deaths\": 0}, {\"Date_reported\": \"2020-02-09T00:00:00\", \"Country_code\": \"US\", \"Country\": \"United States of America\", \"WHO_region\": \"AMRO\", \"New_cases\": 1, \"Cumulative_cases\": 12, \"New_deaths\": 0, \"Cumulative_deaths\": 0}, {\"Date_reported\": \"2020-02-10T00:00:00\", \"Country_code\": \"US\", \"Country\": \"United States of America\", \"WHO_region\": \"AMRO\", \"New_cases\": 0, \"Cumulative_cases\": 12, \"New_deaths\": 0, \"Cumulative_deaths\": 0}, {\"Date_reported\": \"2020-02-11T00:00:00\", \"Country_code\": \"US\", \"Country\": \"United States of America\", \"WHO_region\": \"AMRO\", \"New_cases\": 0, \"Cumulative_cases\": 12, \"New_deaths\": 0, \"Cumulative_deaths\": 0}, {\"Date_reported\": \"2020-02-12T00:00:00\", \"Country_code\": \"US\", \"Country\": \"United States of America\", \"WHO_region\": \"AMRO\", \"New_cases\": 0, \"Cumulative_cases\": 12, \"New_deaths\": 0, \"Cumulative_deaths\": 0}, {\"Date_reported\": \"2020-02-13T00:00:00\", \"Country_code\": \"US\", \"Country\": \"United States of America\", \"WHO_region\": \"AMRO\", \"New_cases\": 0, \"Cumulative_cases\": 12, \"New_deaths\": 0, \"Cumulative_deaths\": 0}, {\"Date_reported\": \"2020-02-14T00:00:00\", \"Country_code\": \"US\", \"Country\": \"United States of America\", \"WHO_region\": \"AMRO\", \"New_cases\": 1, \"Cumulative_cases\": 13, \"New_deaths\": 0, \"Cumulative_deaths\": 0}, {\"Date_reported\": \"2020-02-15T00:00:00\", \"Country_code\": \"US\", \"Country\": \"United States of America\", \"WHO_region\": \"AMRO\", \"New_cases\": 1, \"Cumulative_cases\": 14, \"New_deaths\": 0, \"Cumulative_deaths\": 0}, {\"Date_reported\": \"2020-02-16T00:00:00\", \"Country_code\": \"US\", \"Country\": \"United States of America\", \"WHO_region\": \"AMRO\", \"New_cases\": 0, \"Cumulative_cases\": 14, \"New_deaths\": 0, \"Cumulative_deaths\": 0}, {\"Date_reported\": \"2020-02-17T00:00:00\", \"Country_code\": \"US\", \"Country\": \"United States of America\", \"WHO_region\": \"AMRO\", \"New_cases\": 0, \"Cumulative_cases\": 14, \"New_deaths\": 0, \"Cumulative_deaths\": 0}, {\"Date_reported\": \"2020-02-18T00:00:00\", \"Country_code\": \"US\", \"Country\": \"United States of America\", \"WHO_region\": \"AMRO\", \"New_cases\": 0, \"Cumulative_cases\": 14, \"New_deaths\": 0, \"Cumulative_deaths\": 0}, {\"Date_reported\": \"2020-02-19T00:00:00\", \"Country_code\": \"US\", \"Country\": \"United States of America\", \"WHO_region\": \"AMRO\", \"New_cases\": 2, \"Cumulative_cases\": 16, \"New_deaths\": 0, \"Cumulative_deaths\": 0}, {\"Date_reported\": \"2020-02-20T00:00:00\", \"Country_code\": \"US\", \"Country\": \"United States of America\", \"WHO_region\": \"AMRO\", \"New_cases\": 5, \"Cumulative_cases\": 21, \"New_deaths\": 0, \"Cumulative_deaths\": 0}, {\"Date_reported\": \"2020-02-21T00:00:00\", \"Country_code\": \"US\", \"Country\": \"United States of America\", \"WHO_region\": \"AMRO\", \"New_cases\": 3, \"Cumulative_cases\": 24, \"New_deaths\": 0, \"Cumulative_deaths\": 0}, {\"Date_reported\": \"2020-02-22T00:00:00\", \"Country_code\": \"US\", \"Country\": \"United States of America\", \"WHO_region\": \"AMRO\", \"New_cases\": 1, \"Cumulative_cases\": 25, \"New_deaths\": 0, \"Cumulative_deaths\": 0}, {\"Date_reported\": \"2020-02-23T00:00:00\", \"Country_code\": \"US\", \"Country\": \"United States of America\", \"WHO_region\": \"AMRO\", \"New_cases\": 5, \"Cumulative_cases\": 30, \"New_deaths\": 0, \"Cumulative_deaths\": 0}, {\"Date_reported\": \"2020-02-24T00:00:00\", \"Country_code\": \"US\", \"Country\": \"United States of America\", \"WHO_region\": \"AMRO\", \"New_cases\": 6, \"Cumulative_cases\": 36, \"New_deaths\": 0, \"Cumulative_deaths\": 0}, {\"Date_reported\": \"2020-02-25T00:00:00\", \"Country_code\": \"US\", \"Country\": \"United States of America\", \"WHO_region\": \"AMRO\", \"New_cases\": 0, \"Cumulative_cases\": 36, \"New_deaths\": 0, \"Cumulative_deaths\": 0}, {\"Date_reported\": \"2020-02-26T00:00:00\", \"Country_code\": \"US\", \"Country\": \"United States of America\", \"WHO_region\": \"AMRO\", \"New_cases\": 4, \"Cumulative_cases\": 40, \"New_deaths\": 0, \"Cumulative_deaths\": 0}, {\"Date_reported\": \"2020-02-27T00:00:00\", \"Country_code\": \"US\", \"Country\": \"United States of America\", \"WHO_region\": \"AMRO\", \"New_cases\": 4, \"Cumulative_cases\": 44, \"New_deaths\": 0, \"Cumulative_deaths\": 0}, {\"Date_reported\": \"2020-02-28T00:00:00\", \"Country_code\": \"US\", \"Country\": \"United States of America\", \"WHO_region\": \"AMRO\", \"New_cases\": 8, \"Cumulative_cases\": 52, \"New_deaths\": 0, \"Cumulative_deaths\": 0}, {\"Date_reported\": \"2020-02-29T00:00:00\", \"Country_code\": \"US\", \"Country\": \"United States of America\", \"WHO_region\": \"AMRO\", \"New_cases\": 5, \"Cumulative_cases\": 57, \"New_deaths\": 0, \"Cumulative_deaths\": 0}, {\"Date_reported\": \"2020-03-01T00:00:00\", \"Country_code\": \"US\", \"Country\": \"United States of America\", \"WHO_region\": \"AMRO\", \"New_cases\": 4, \"Cumulative_cases\": 61, \"New_deaths\": 0, \"Cumulative_deaths\": 0}, {\"Date_reported\": \"2020-03-02T00:00:00\", \"Country_code\": \"US\", \"Country\": \"United States of America\", \"WHO_region\": \"AMRO\", \"New_cases\": 9, \"Cumulative_cases\": 70, \"New_deaths\": 1, \"Cumulative_deaths\": 1}, {\"Date_reported\": \"2020-03-03T00:00:00\", \"Country_code\": \"US\", \"Country\": \"United States of America\", \"WHO_region\": \"AMRO\", \"New_cases\": 18, \"Cumulative_cases\": 88, \"New_deaths\": 0, \"Cumulative_deaths\": 1}, {\"Date_reported\": \"2020-03-04T00:00:00\", \"Country_code\": \"US\", \"Country\": \"United States of America\", \"WHO_region\": \"AMRO\", \"New_cases\": 36, \"Cumulative_cases\": 124, \"New_deaths\": 6, \"Cumulative_deaths\": 7}, {\"Date_reported\": \"2020-03-05T00:00:00\", \"Country_code\": \"US\", \"Country\": \"United States of America\", \"WHO_region\": \"AMRO\", \"New_cases\": 64, \"Cumulative_cases\": 188, \"New_deaths\": 3, \"Cumulative_deaths\": 10}, {\"Date_reported\": \"2020-03-06T00:00:00\", \"Country_code\": \"US\", \"Country\": \"United States of America\", \"WHO_region\": \"AMRO\", \"New_cases\": 67, \"Cumulative_cases\": 255, \"New_deaths\": 2, \"Cumulative_deaths\": 12}, {\"Date_reported\": \"2020-03-07T00:00:00\", \"Country_code\": \"US\", \"Country\": \"United States of America\", \"WHO_region\": \"AMRO\", \"New_cases\": 78, \"Cumulative_cases\": 333, \"New_deaths\": 3, \"Cumulative_deaths\": 15}, {\"Date_reported\": \"2020-03-08T00:00:00\", \"Country_code\": \"US\", \"Country\": \"United States of America\", \"WHO_region\": \"AMRO\", \"New_cases\": 121, \"Cumulative_cases\": 454, \"New_deaths\": 3, \"Cumulative_deaths\": 18}, {\"Date_reported\": \"2020-03-09T00:00:00\", \"Country_code\": \"US\", \"Country\": \"United States of America\", \"WHO_region\": \"AMRO\", \"New_cases\": 160, \"Cumulative_cases\": 614, \"New_deaths\": 5, \"Cumulative_deaths\": 23}, {\"Date_reported\": \"2020-03-10T00:00:00\", \"Country_code\": \"US\", \"Country\": \"United States of America\", \"WHO_region\": \"AMRO\", \"New_cases\": 209, \"Cumulative_cases\": 823, \"New_deaths\": 4, \"Cumulative_deaths\": 27}, {\"Date_reported\": \"2020-03-11T00:00:00\", \"Country_code\": \"US\", \"Country\": \"United States of America\", \"WHO_region\": \"AMRO\", \"New_cases\": 420, \"Cumulative_cases\": 1243, \"New_deaths\": 4, \"Cumulative_deaths\": 31}, {\"Date_reported\": \"2020-03-12T00:00:00\", \"Country_code\": \"US\", \"Country\": \"United States of America\", \"WHO_region\": \"AMRO\", \"New_cases\": 493, \"Cumulative_cases\": 1736, \"New_deaths\": 7, \"Cumulative_deaths\": 38}, {\"Date_reported\": \"2020-03-13T00:00:00\", \"Country_code\": \"US\", \"Country\": \"United States of America\", \"WHO_region\": \"AMRO\", \"New_cases\": 514, \"Cumulative_cases\": 2250, \"New_deaths\": 12, \"Cumulative_deaths\": 50}, {\"Date_reported\": \"2020-03-14T00:00:00\", \"Country_code\": \"US\", \"Country\": \"United States of America\", \"WHO_region\": \"AMRO\", \"New_cases\": 748, \"Cumulative_cases\": 2998, \"New_deaths\": 7, \"Cumulative_deaths\": 57}, {\"Date_reported\": \"2020-03-15T00:00:00\", \"Country_code\": \"US\", \"Country\": \"United States of America\", \"WHO_region\": \"AMRO\", \"New_cases\": 911, \"Cumulative_cases\": 3909, \"New_deaths\": 11, \"Cumulative_deaths\": 68}, {\"Date_reported\": \"2020-03-16T00:00:00\", \"Country_code\": \"US\", \"Country\": \"United States of America\", \"WHO_region\": \"AMRO\", \"New_cases\": 1231, \"Cumulative_cases\": 5140, \"New_deaths\": 13, \"Cumulative_deaths\": 81}, {\"Date_reported\": \"2020-03-17T00:00:00\", \"Country_code\": \"US\", \"Country\": \"United States of America\", \"WHO_region\": \"AMRO\", \"New_cases\": 2198, \"Cumulative_cases\": 7338, \"New_deaths\": 18, \"Cumulative_deaths\": 99}, {\"Date_reported\": \"2020-03-18T00:00:00\", \"Country_code\": \"US\", \"Country\": \"United States of America\", \"WHO_region\": \"AMRO\", \"New_cases\": 2346, \"Cumulative_cases\": 9684, 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"alt.Chart(us).mark_line().encode(\n",
" x = 'Date_reported:T', \n",
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")"
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{
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"text/plain": [
"alt.Chart(...)"
]
},
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}
],
"source": [
"alt.Chart(us).mark_line().encode(\n",
" x = 'Date_reported:T', \n",
" y = 'New_deaths'\n",
")"
]
},
{
"cell_type": "code",
"execution_count": 13,
"metadata": {},
"outputs": [
{
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"text/plain": [
"alt.Chart(...)"
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},
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}
],
"source": [
"alt.Chart(\n",
" us.loc[us.Date_reported > pd.Timestamp('07-15-2021')]\n",
").mark_line().encode(\n",
" x = 'Date_reported:T', \n",
" y = 'New_cases'\n",
")"
]
},
{
"cell_type": "code",
"execution_count": 17,
"metadata": {},
"outputs": [
{
"data": {
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{
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"metadata": {},
"outputs": [],
"source": [
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]
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{
"cell_type": "code",
"execution_count": 23,
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{
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"157404 0\n",
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"source": [
"\n",
"us_delta.Cumulative_cases \\\n",
"- us_delta.Cumulative_cases.min()"
]
},
{
"cell_type": "code",
"execution_count": 24,
"metadata": {},
"outputs": [],
"source": [
"us_delta['new_cumulative_cases'] = us_delta.Cumulative_cases - us_delta.Cumulative_cases.min()"
]
},
{
"cell_type": "code",
"execution_count": 25,
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{
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\"2021-11-07T00:00:00\", \"Country_code\": \"US\", \"Country\": \"United States of America\", \"WHO_region\": \"AMRO\", \"New_cases\": 89454, \"Cumulative_cases\": 46146485, \"New_deaths\": 1590, \"Cumulative_deaths\": 749201, \"new_cumulative_cases\": 12333800}, {\"Date_reported\": \"2021-11-08T00:00:00\", \"Country_code\": \"US\", \"Country\": \"United States of America\", \"WHO_region\": \"AMRO\", \"New_cases\": 28745, \"Cumulative_cases\": 46175230, \"New_deaths\": 411, \"Cumulative_deaths\": 749612, \"new_cumulative_cases\": 12362545}, {\"Date_reported\": \"2021-11-09T00:00:00\", \"Country_code\": \"US\", \"Country\": \"United States of America\", \"WHO_region\": \"AMRO\", \"New_cases\": 25859, \"Cumulative_cases\": 46201089, \"New_deaths\": 197, \"Cumulative_deaths\": 749809, \"new_cumulative_cases\": 12388404}, {\"Date_reported\": \"2021-11-10T00:00:00\", \"Country_code\": \"US\", \"Country\": \"United States of America\", \"WHO_region\": \"AMRO\", \"New_cases\": 128066, \"Cumulative_cases\": 46329155, \"New_deaths\": 1160, \"Cumulative_deaths\": 750969, \"new_cumulative_cases\": 12516470}, {\"Date_reported\": \"2021-11-11T00:00:00\", \"Country_code\": \"US\", \"Country\": \"United States of America\", \"WHO_region\": \"AMRO\", \"New_cases\": 83063, \"Cumulative_cases\": 46412218, \"New_deaths\": 1549, \"Cumulative_deaths\": 752518, \"new_cumulative_cases\": 12599533}, {\"Date_reported\": \"2021-11-12T00:00:00\", \"Country_code\": \"US\", \"Country\": \"United States of America\", \"WHO_region\": \"AMRO\", \"New_cases\": 92270, \"Cumulative_cases\": 46504488, \"New_deaths\": 1333, \"Cumulative_deaths\": 753851, \"new_cumulative_cases\": 12691803}, {\"Date_reported\": \"2021-11-13T00:00:00\", \"Country_code\": \"US\", \"Country\": \"United States of America\", \"WHO_region\": \"AMRO\", \"New_cases\": 69994, \"Cumulative_cases\": 46574482, \"New_deaths\": 919, \"Cumulative_deaths\": 754770, \"new_cumulative_cases\": 12761797}, {\"Date_reported\": \"2021-11-14T00:00:00\", \"Country_code\": \"US\", \"Country\": \"United States of America\", \"WHO_region\": \"AMRO\", \"New_cases\": 124645, \"Cumulative_cases\": 46699127, \"New_deaths\": 1814, \"Cumulative_deaths\": 756584, \"new_cumulative_cases\": 12886442}, {\"Date_reported\": \"2021-11-15T00:00:00\", \"Country_code\": \"US\", \"Country\": \"United States of America\", \"WHO_region\": \"AMRO\", \"New_cases\": 61281, \"Cumulative_cases\": 46760408, \"New_deaths\": 480, \"Cumulative_deaths\": 757064, \"new_cumulative_cases\": 12947723}, {\"Date_reported\": \"2021-11-16T00:00:00\", \"Country_code\": \"US\", \"Country\": \"United States of America\", \"WHO_region\": \"AMRO\", \"New_cases\": 27821, \"Cumulative_cases\": 46788229, \"New_deaths\": 174, \"Cumulative_deaths\": 757238, \"new_cumulative_cases\": 12975544}, {\"Date_reported\": \"2021-11-17T00:00:00\", \"Country_code\": \"US\", \"Country\": \"United States of America\", \"WHO_region\": \"AMRO\", \"New_cases\": 145975, \"Cumulative_cases\": 46934204, \"New_deaths\": 1110, \"Cumulative_deaths\": 758348, \"new_cumulative_cases\": 13121519}, {\"Date_reported\": \"2021-11-18T00:00:00\", \"Country_code\": \"US\", \"Country\": \"United States of America\", \"WHO_region\": \"AMRO\", \"New_cases\": 96586, \"Cumulative_cases\": 47030790, \"New_deaths\": 1431, \"Cumulative_deaths\": 759779, \"new_cumulative_cases\": 13218105}, {\"Date_reported\": \"2021-11-19T00:00:00\", \"Country_code\": \"US\", \"Country\": \"United States of America\", \"WHO_region\": \"AMRO\", \"New_cases\": 105052, \"Cumulative_cases\": 47135842, \"New_deaths\": 1412, \"Cumulative_deaths\": 761191, \"new_cumulative_cases\": 13323157}, {\"Date_reported\": \"2021-11-20T00:00:00\", \"Country_code\": \"US\", \"Country\": \"United States of America\", \"WHO_region\": \"AMRO\", \"New_cases\": 124223, \"Cumulative_cases\": 47260065, \"New_deaths\": 3893, \"Cumulative_deaths\": 765084, \"new_cumulative_cases\": 13447380}, {\"Date_reported\": \"2021-11-21T00:00:00\", \"Country_code\": \"US\", \"Country\": \"United States of America\", \"WHO_region\": \"AMRO\", \"New_cases\": 112734, \"Cumulative_cases\": 47372799, \"New_deaths\": 1832, \"Cumulative_deaths\": 766916, \"new_cumulative_cases\": 13560114}, {\"Date_reported\": \"2021-11-22T00:00:00\", \"Country_code\": \"US\", \"Country\": \"United States of America\", \"WHO_region\": \"AMRO\", \"New_cases\": 32331, \"Cumulative_cases\": 47405130, \"New_deaths\": 269, \"Cumulative_deaths\": 767185, \"new_cumulative_cases\": 13592445}, {\"Date_reported\": \"2021-11-23T00:00:00\", \"Country_code\": \"US\", \"Country\": \"United States of America\", \"WHO_region\": \"AMRO\", \"New_cases\": 32036, \"Cumulative_cases\": 47437166, \"New_deaths\": 111, \"Cumulative_deaths\": 767296, \"new_cumulative_cases\": 13624481}, {\"Date_reported\": \"2021-11-24T00:00:00\", \"Country_code\": \"US\", \"Country\": \"United States of America\", \"WHO_region\": \"AMRO\", \"New_cases\": 162130, \"Cumulative_cases\": 47599296, \"New_deaths\": 1269, \"Cumulative_deaths\": 768565, \"new_cumulative_cases\": 13786611}, {\"Date_reported\": \"2021-11-25T00:00:00\", \"Country_code\": \"US\", \"Country\": \"United States of America\", \"WHO_region\": \"AMRO\", \"New_cases\": 102708, \"Cumulative_cases\": 47702004, \"New_deaths\": 1597, \"Cumulative_deaths\": 770162, \"new_cumulative_cases\": 13889319}, {\"Date_reported\": \"2021-11-26T00:00:00\", \"Country_code\": \"US\", \"Country\": \"United States of America\", \"WHO_region\": \"AMRO\", \"New_cases\": 100455, \"Cumulative_cases\": 47802459, \"New_deaths\": 1367, \"Cumulative_deaths\": 771529, \"new_cumulative_cases\": 13989774}]}}, {\"mode\": \"vega-lite\"});\n",
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],
"text/plain": [
"alt.Chart(...)"
]
},
"execution_count": 25,
"metadata": {},
"output_type": "execute_result"
}
],
"source": [
"alt.Chart(\n",
" us_delta\n",
").mark_line().encode(\n",
" x = 'Date_reported:T', \n",
" y = 'new_cumulative_cases'\n",
")"
]
},
{
"cell_type": "code",
"execution_count": 26,
"metadata": {},
"outputs": [],
"source": [
"us_delta.to_csv('./data/us_july_15-present.csv')"
]
},
{
"cell_type": "code",
"execution_count": 29,
"metadata": {},
"outputs": [
{
"data": {
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"<table border=\"1\" class=\"dataframe\">\n",
" <thead>\n",
" <tr style=\"text-align: right;\">\n",
" <th></th>\n",
" <th>Date_reported</th>\n",
" <th>Country_code</th>\n",
" <th>Country</th>\n",
" <th>WHO_region</th>\n",
" <th>New_cases</th>\n",
" <th>Cumulative_cases</th>\n",
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" <td>2021-09-03</td>\n",
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"text/plain": [
" Date_reported Country_code Country WHO_region \\\n",
"157453 2021-09-03 US United States of America AMRO \n",
"\n",
" New_cases Cumulative_cases New_deaths Cumulative_deaths \\\n",
"157453 198453 39317981 1994 646132 \n",
"\n",
" new_cumulative_cases \n",
"157453 5505296 "
]
},
"execution_count": 29,
"metadata": {},
"output_type": "execute_result"
}
],
"source": [
"max_cases = us_delta.New_cases.max()\n",
"us_delta.loc[us_delta.New_cases == max_cases]\n"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": []
}
],
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