{ "assemblies": [ { "name": "Rattus_norvegicus", "displayName": "Rattus norvegicus", "sequence": { "type": "ReferenceSequenceTrack", "trackId": "Rattus_norvegicus_refseq", "adapter": { "type": "BgzipFastaAdapter", "fastaLocation": { "locationType": "UriLocation", "uri": "https://s3.amazonaws.com/agrjbrowse/fasta/GCF_015227675.2_mRatBN7.2_genomic.fna.gz" }, "faiLocation": { "locationType": "UriLocation", "uri": "https://s3.amazonaws.com/agrjbrowse/fasta/GCF_015227675.2_mRatBN7.2_genomic.fna.gz.fai" }, "metadataLocation": { "locationType": "UriLocation", "uri": "https://s3.amazonaws.com/agrjbrowse/fasta/GCF_015227675.2_mRatBN7.2_genomic.yaml" }, "gziLocation": { "locationType": "UriLocation", "uri": "https://s3.amazonaws.com/agrjbrowse/fasta/GCF_015227675.2_mRatBN7.2_genomic.fna.gz.gzi" } }, "displays": [ { "type": "LinearReferenceSequenceDisplay", "displayId": "Rattus_norvegicus_refseq-LinearReferenceSequenceDisplay" }, { "type": "LinearGCContentDisplay", "displayId": "Rattus_norvegicus_refseq-LinearGCContentDisplay" } ] } }, { "name": "Drosophila_melanogaster", "displayName": "Drosophila melanogaster", "sequence": { "type": "ReferenceSequenceTrack", "trackId": "Drosophila_melanogaster_refseq", "adapter": { "type": "BgzipFastaAdapter", "fastaLocation": { "locationType": "UriLocation", "uri": "https://s3.amazonaws.com/agrjbrowse/fasta/GCF_000001215.4_Release_6_plus_ISO1_MT_genomic.fna.gz" }, "faiLocation": { "locationType": "UriLocation", "uri": "https://s3.amazonaws.com/agrjbrowse/fasta/GCF_000001215.4_Release_6_plus_ISO1_MT_genomic.fna.gz.fai" }, "metadataLocation": { "locationType": "UriLocation", "uri": "https://s3.amazonaws.com/agrjbrowse/fasta/GCF_000001215.4_Release_6_plus_ISO1_MT_genomic.yaml" }, "gziLocation": { "locationType": "UriLocation", "uri": "https://s3.amazonaws.com/agrjbrowse/fasta/GCF_000001215.4_Release_6_plus_ISO1_MT_genomic.fna.gz.gzi" } }, "displays": [ { "type": "LinearReferenceSequenceDisplay", "displayId": "Drosophila_melanogaster_refseq-LinearReferenceSequenceDisplay" }, { "type": "LinearGCContentDisplay", "displayId": "Drosophila_melanogaster_refseq-LinearGCContentDisplay" } ] } } ], "tracks" : [ { "type": "FeatureTrack", "trackId": "rat_all_genes", "name": "All Genes", "assemblyNames": [ "Rattus_norvegicus" ], "adapter": { "type": "NCListAdapter", "rootUrlTemplate": { "locationType": "UriLocation", "uri": "https://s3.amazonaws.com/agrjbrowse/docker/5.3.0/RGD/rat/tracks/All_Genes/{refseq}/trackData.jsonz" } }, "displays": [ { "type": "LinearBasicDisplay", "displayId": "trackdata.jsonz-1676655636388-LinearBasicDisplay" }, { "type": "LinearArcDisplay", "displayId": "trackdata.jsonz-1676655636388-LinearArcDisplay" } ] }, { "type": "FeatureTrack", "trackId": "fruitfly_all_genes", "name": "All Genes", "assemblyNames": [ "Drosophila_melanogaster" ], "adapter": { "type": "NCListAdapter", "rootUrlTemplate": { "locationType": "UriLocation", "uri": "https://s3.amazonaws.com/agrjbrowse/docker/5.3.0/FlyBase/fruitfly/tracks/All_Genes/{refseq}/trackData.jsonz" } }, "displays": [ { "type": "LinearBasicDisplay", "displayId": "fruitfly_all_genes-LinearBasicDisplay" }, { "type": "LinearArcDisplay", "displayId": "fruitfly_all_genes-LinearArcDisplay" } ] }, { "type": "VariantTrack", "trackId": "rat_variants", "name": "Variants", "assemblyNames": [ "Rattus_norvegicus" ], "adapter": { "type": "VcfTabixAdapter", "vcfGzLocation": { "locationType": "UriLocation", "uri": "https://s3.amazonaws.com/agrjbrowse/VCF/5.3.0/rat-latest.vcf.gz" }, "index": { "location": { "locationType": "UriLocation", "uri": "https://s3.amazonaws.com/agrjbrowse/VCF/5.3.0/rat-latest.vcf.gz.tbi" } } }, "displays": [ { "type": "LinearVariantDisplay", "displayId": "rat_variants-LinearVariantDisplay" }, { "type": "ChordVariantDisplay", "displayId": "rat_variants-ChordVariantDisplay" } ] }, { "type": "VariantTrack", "trackId": "fruitfly_variants", "name": "Variants", "assemblyNames": [ "Drosophila_melanogaster" ], "adapter": { "type": "VcfTabixAdapter", "vcfGzLocation": { "locationType": "UriLocation", "uri": "https://s3.amazonaws.com/agrjbrowse/VCF/5.3.0/fly-latest.vcf.gz" }, "index": { "location": { "locationType": "UriLocation", "uri": "https://s3.amazonaws.com/agrjbrowse/VCF/5.3.0/fly-latest.vcf.gz.tbi" } } }, "displays": [ { "type": "LinearVariantDisplay", "displayId": "fruitfly_variants-LinearVariantDisplay" }, { "type": "ChordVariantDisplay", "displayId": "fruitfly_variants-ChordVariantDisplay" } ] }, { "type": "VariantTrack", "trackId": "rat_ht_variants", "name": "High Throughput Variants", "assemblyNames": [ "Rattus_norvegicus" ], "adapter": { "type": "VcfTabixAdapter", "vcfGzLocation": { "locationType": "UriLocation", "uri": "https://s3.amazonaws.com/agrjbrowse/VCF/5.3.0/HTPOSTVEPVCF_RGD_latest.vcf.gz" }, "index": { "location": { "locationType": "UriLocation", "uri": "https://s3.amazonaws.com/agrjbrowse/VCF/5.3.0/HTPOSTVEPVCF_RGD_latest.vcf.gz.tbi" } } }, "displays": [ { "type": "LinearVariantDisplay", "displayId": "rat_ht_variants-LinearVariantDisplay" }, { "type": "ChordVariantDisplay", "displayId": "rat_ht_variants-ChordVariantDisplay" } ] }, { "type": "VariantTrack", "trackId": "fruitfly_ht_variants", "name": "High Throughput Variants", "assemblyNames": [ "Drosophila_melanogaster" ], "adapter": { "type": "VcfTabixAdapter", "vcfGzLocation": { "locationType": "UriLocation", "uri": "https://s3.amazonaws.com/agrjbrowse/VCF/5.3.0/HTPOSTVEPVCF_FB_latest.vcf.gz" }, "index": { "location": { "locationType": "UriLocation", "uri": "https://s3.amazonaws.com/agrjbrowse/VCF/5.3.0/HTPOSTVEPVCF_FB_latest.vcf.gz.tbi" } } }, "displays": [ { "type": "LinearVariantDisplay", "displayId": "fruitfly_ht_variants-LinearVariantDisplay" }, { "type": "ChordVariantDisplay", "displayId": "fruitfly_ht_variants-ChordVariantDisplay" } ] }, { "type": "FeatureTrack", "trackId": "fruitfly_multiple-variant_alleles", "name": "Multiple-Variant Alleles", "assemblyNames": [ "Drosophila_melanogaster" ], "adapter": { "type": "NCListAdapter", "rootUrlTemplate": { "locationType": "UriLocation", "uri": "https://s3.amazonaws.com/agrjbrowse/docker/3.2.0/FlyBase/fruitfly/tracks/Multiple-Variant Alleles/{refseq}/trackData.jsonz" } }, "displays": [ { "type": "LinearBasicDisplay", "displayId": "fruitfly_multiple-variant_alleles-LinearBasicDisplay" }, { "type": "LinearArcDisplay", "displayId": "fruitfly_multiple-variant_alleles-LinearArcDisplay" } ] } ] }