Bookmarks

R

R Consortium - YouTube
Welcome · Advanced R.
Gaston Sanchez
BasicBasics 1 | R-Ladies Sydney
Learning R with humorous side projects - Ryan Timpe
YaRrr! The Pirate’s Guide to R
tidyverse Data analysis using R
daattali/addinslist: Discover and install useful RStudio addins
Swirl courses, learn R in your terminal
rstudio::conf 2019 videos
R for Data Science
Big Book of R
Torfs+Brauer-Short-R-Intro.pdf
R for Excel users - Rex Analytics
Rex Blogs - Rex Analytics
R for Researchers: An Introduction
RStudio Cloud
Big Book of R
Twitter for R programmers
Home · Joscelinrocha/Learning-R-Resources Wiki
aRrgh: a newcomer's (angry) guide to R
learnR4free

Python

Python Data Science Handbook | Python Data Science Handbook
The Hitchhiker’s Guide to Python! — The Hitchhiker's Guide to Python
Interactive Spyder and Jupyter Matplotlib plots in separate window | Michael Hirsch, Ph.D.
Data Science from Scratch: First Principles with Python
Python as a Second Language: Basics
Episodes - [Talk Python To Me Podcast]
Image processing in Python — scikit-image
Non-Programmer's Tutorial for Python 3 - Wikibooks, open books for an open world
Introduction — Python for Biologists
Research Software Engineering with Python
Research Software Engineering with Python
Welcome to Python 101!

Data Visualizations

From data to Viz | Find the graphic you need
Knight Lab
Search for Charts by Data Visualization Functions
visgap.pdf
The Xenographic Matrix – Xenographics
Yan Holtz's material for teaching data analytics and data visualization.
AutoDraw
Chart.js | Open source HTML5 Charts for your website
About | RAWGraphs
7 Data Visualization Types You Should be Using More (and How to Start) | by Evan Sinar | Medium
Zooniverse
Tinkercad | Create 3D digital designs with online CAD
Image analysis for biologists
Data Visualization: A Lesson and Listen Series
Yan Holtz | Data - Science - Viz

General Data Science

Becoming a Data Scientist – Curriculum via Metromap ← Pragmatic Perspectives
Exploratory Data Analysis Course Notes
Python vs. R: The battle for data scientist mind share | InfoWorld
The Architecture of Open Source Applications: VisTrails
Recommended Resources for Beginners | Data Sci Guide
ResBaz Tucson May 18-29, 2020
Research Software Engineering with Python
The Turing Way
Getting started - GLAM Workbench
Digital Research Skills Australasia
DSCI 310 Reproducible and Trustworthy Workflows for Data Science

Git

Front matter · GitBook
github free programming books
Who is this for? · GitBook
Github for the useR
On undoing, fixing, or removing commits in git
GitHub for Beginners | GitHub Resources Library
GitHub Guides
Git Tutorial - Try Git
10 Common Git Problems and How to Fix Them - DEV Community 👩‍💻👨‍💻
GitHub Doubles Inventory in Learning Lab -- Campus Technology
Git and GitHub learning resources - User Documentation
git - the simple guide - no deep shit!
A Visual Git Reference
Git for Scientists
Git and GitHub · R packages
Understanding Git (part 1) — Explain it Like I’m Five
Contribute to someone's repository
Git For Ages 4 And Up - YouTube

Linux/Bash

How to Install Ubuntu Linux on VirtualBox on Windows 10 [Step by Step Guide]
How To Get Started With The Ubuntu Linux Distro | Gizmodo Australia
The Unix Workbench
Thinking like a Computer: The Fundamentals of Programming - YouTube
The Missing Semester of Your CS Education · the missing semester of your cs education
Incubator Lesson Spotlight: Foundational Computer Skills
Run Docker in WSL (Windows 10/11) without Docker Desktop | by Sung Kim | Geek Culture | Medium

High Performance Compute/Cloud Compute

Gnu Parallel - Parallelize Serial Command Line Programs Without Changing Them
HPC in a day
Nectar training
HPC Novice- Softcarp
Containers on HPC and Cloud with Singularity
Open GPU Data Science | RAPIDS
Training Material - User Support Documentation - Pawsey Documentation

Machine learning

Machine Learning Version Control System
Weka 3 - Data Mining with Open Source Machine Learning Software in Java

Tech writing

The Journal of Open Source Software
Authoring With Markdown – Building Websites With Jekyll and GitHub

Data management and Reproducible Research

3. Process - CESSDA TRAINING
Browse by subject | re3data.org
De-identification - ARDC
Code Testing — The Turing Way
Repeat After Me - by Maki Naro
You Want to See My Data? I Thought We Were Friends!
Reproducible Research with Stata - using version control, GitHub, and MarkDoc

Dir of tools and repos

Openscience- open source tools by use
Open Knowledge Maps - A visual interface to the world's scientific knowledge
Science
Open Knowledge: Projects
The Open Data Handbook
ckan – The open source data portal software
protocols.io - Life Sciences Protocol Repository
CC Search
Labs and Tools - Nectar
OpenWetWare
About - data.gov.au
Welcome to the OpenBCI Community · OpenBCI Documentation
CVL on Wiener list of software tools | CVL Community

Data Reshaping

Tabula: Extract Tables from PDFs
Whiteboard Picture Cleaner - Shell one-liner/script to clean up and beautify photos of whiteboards!
OpenRefine/OpenRefine Wiki

Stats help

5minuteStats
Cross Validated
Which Stats Test - SAGE Research Methods
Choosing the Correct Statistical Test in SAS, Stata, SPSS and R
Learning Statistics with R
Statistical Thinking for the 21st Century
1 Introduction | A Matrix Algebra Companion for Statistical Learning
PsyTeachR

Bioinfo

Bioinformatics Tutorials | Phil Chapman's Blog
learn BioInfo - ROSALIND
Living in an Ivory Basement
ToolFinder
Galaxy Training

Eco/Enviromental links

ecocloud |
Free and Open Access to Biodiversity Data | GBIF.org
SunPy
What is Dr Climate? | Dr Climate
ZoaTrack - Free Animal Tracking Software
Education | DataONE
Macroeco: Ecological pattern analysis in Python — macroeco 1.0 documentation
Atlas of Living Australia – Open access to Australia’s biodiversity data
TERN - Australia's Land Ecosystem Observatory | Critical Data

Geospatial and Maps

Geospatial data and metadata - ANDS
Getting Started
Queensland Globe
Google Maps and R
AURIN Home - AURIN. Australian Urban Research Infrastructure Network

Humanities, Arts and Social Sciences

All Those Shapes — Google Arts & Culture
Google Arts & Culture
Google Expeditions
Humanities Networked Infrastructure - HuNI
Omeka
Word Tree / Fernanda Viegas & Martin Wattenberg
Text Mining with R
PLOS Collections: Article collections published by the Public Library of Science
Introduction to Cultural Analytics & Python — Introduction to Cultural Analytics & Python
Welcome - GLAM Workbench

IT misc

Atom
Code Carabiners: Essential Protection Tools for Safe Programming - O'Reilly Radar
Code for a Living - Stack Overflow Blog
Hard Coding Concepts Explained with Simple Real-life Analogies
CodeNewbie
GNU Parallel tutorial
Web designing tutorial list
Insights - Stack Overflow Blog

Lessons and books misc

Free Courses Online | Open2Study
Quartz/bad-data-guide: An exhaustive reference to problems seen in real-world data along with suggestions on how to resolve them.
Subjects - OpenStax
Greg Wilson | DataCamp
Browse Online Courses - FutureLearn
Altmetric- social media tracking Publications
Random Carpentries
Open Textbook Library
Digital Research Skills Australasia
Materials - Digital Research Skills Australasia
The Art Of Troubleshooting by Jason Maxham (March 22, 2021)
4 steps to troubleshooting (almost) any IT issue
ResBazQld Keynotes 2021

Cheatsheets

R Cheat Sheet and Guide for Graphical Parameters | FlowingData
MiscCheatsheets

Open Data

Data Access - Australian Space Data Analysis Facility