Bookmarks
R
- R Consortium - YouTube
- Welcome · Advanced R.
- Gaston Sanchez
- BasicBasics 1 | R-Ladies Sydney
- Learning R with humorous side projects - Ryan Timpe
- YaRrr! The Pirate’s Guide to R
- tidyverse Data analysis using R
- daattali/addinslist: Discover and install useful RStudio addins
- Swirl courses, learn R in your terminal
- rstudio::conf 2019 videos
- R for Data Science
- Big Book of R
- Torfs+Brauer-Short-R-Intro.pdf
- R for Excel users - Rex Analytics
- Rex Blogs - Rex Analytics
- R for Researchers: An Introduction
- RStudio Cloud
- Big Book of R
- Twitter for R programmers
- Home · Joscelinrocha/Learning-R-Resources Wiki
- aRrgh: a newcomer's (angry) guide to R
- learnR4free
Python
- Python Data Science Handbook | Python Data Science Handbook
- The Hitchhiker’s Guide to Python! — The Hitchhiker's Guide to Python
- Interactive Spyder and Jupyter Matplotlib plots in separate window | Michael Hirsch, Ph.D.
- Data Science from Scratch: First Principles with Python
- Python as a Second Language: Basics
- Episodes - [Talk Python To Me Podcast]
- Image processing in Python — scikit-image
- Non-Programmer's Tutorial for Python 3 - Wikibooks, open books for an open world
- Introduction — Python for Biologists
- Research Software Engineering with Python
- Research Software Engineering with Python
- Welcome to Python 101!
Data Visualizations
- From data to Viz | Find the graphic you need
- Knight Lab
- Search for Charts by Data Visualization Functions
- visgap.pdf
- The Xenographic Matrix – Xenographics
- Yan Holtz's material for teaching data analytics and data visualization.
- AutoDraw
- Chart.js | Open source HTML5 Charts for your website
- About | RAWGraphs
- 7 Data Visualization Types You Should be Using More (and How to Start) | by Evan Sinar | Medium
- Zooniverse
- Tinkercad | Create 3D digital designs with online CAD
- Image analysis for biologists
- Data Visualization: A Lesson and Listen Series
- Yan Holtz | Data - Science - Viz
General Data Science
- Becoming a Data Scientist – Curriculum via Metromap ← Pragmatic Perspectives
- Exploratory Data Analysis Course Notes
- Python vs. R: The battle for data scientist mind share | InfoWorld
- The Architecture of Open Source Applications: VisTrails
- Recommended Resources for Beginners | Data Sci Guide
- ResBaz Tucson May 18-29, 2020
- Research Software Engineering with Python
- The Turing Way
- Getting started - GLAM Workbench
- Digital Research Skills Australasia
- DSCI 310 Reproducible and Trustworthy Workflows for Data Science
Git
- Front matter · GitBook
- github free programming books
- Who is this for? · GitBook
- Github for the useR
- On undoing, fixing, or removing commits in git
- GitHub for Beginners | GitHub Resources Library
- GitHub Guides
- Git Tutorial - Try Git
- 10 Common Git Problems and How to Fix Them - DEV Community 👩💻👨💻
- GitHub Doubles Inventory in Learning Lab -- Campus Technology
- Git and GitHub learning resources - User Documentation
- git - the simple guide - no deep shit!
- A Visual Git Reference
- Git for Scientists
- Git and GitHub · R packages
- Understanding Git (part 1) — Explain it Like I’m Five
- Contribute to someone's repository
- Git For Ages 4 And Up - YouTube
Linux/Bash
- How to Install Ubuntu Linux on VirtualBox on Windows 10 [Step by Step Guide]
- How To Get Started With The Ubuntu Linux Distro | Gizmodo Australia
- The Unix Workbench
- Thinking like a Computer: The Fundamentals of Programming - YouTube
- The Missing Semester of Your CS Education · the missing semester of your cs education
- Incubator Lesson Spotlight: Foundational Computer Skills
- Run Docker in WSL (Windows 10/11) without Docker Desktop | by Sung Kim | Geek Culture | Medium
High Performance Compute/Cloud Compute
- Gnu Parallel - Parallelize Serial Command Line Programs Without Changing Them
- HPC in a day
- Nectar training
- HPC Novice- Softcarp
- Containers on HPC and Cloud with Singularity
- Open GPU Data Science | RAPIDS
- Training Material - User Support Documentation - Pawsey Documentation
Machine learning
- Machine Learning Version Control System
- Weka 3 - Data Mining with Open Source Machine Learning Software in Java
Tech writing
- The Journal of Open Source Software
- Authoring With Markdown – Building Websites With Jekyll and GitHub
Data management and Reproducible Research
- 3. Process - CESSDA TRAINING
- Browse by subject | re3data.org
- De-identification - ARDC
- Code Testing — The Turing Way
- Repeat After Me - by Maki Naro
- You Want to See My Data? I Thought We Were Friends!
- Reproducible Research with Stata - using version control, GitHub, and MarkDoc
Dir of tools and repos
- Openscience- open source tools by use
- Open Knowledge Maps - A visual interface to the world's scientific knowledge
- Science
- Open Knowledge: Projects
- The Open Data Handbook
- ckan – The open source data portal software
- protocols.io - Life Sciences Protocol Repository
- CC Search
- Labs and Tools - Nectar
- OpenWetWare
- About - data.gov.au
- Welcome to the OpenBCI Community · OpenBCI Documentation
- CVL on Wiener list of software tools | CVL Community
Data Reshaping
- Tabula: Extract Tables from PDFs
- Whiteboard Picture Cleaner - Shell one-liner/script to clean up and beautify photos of whiteboards!
- OpenRefine/OpenRefine Wiki
Stats help
- 5minuteStats
- Cross Validated
- Which Stats Test - SAGE Research Methods
- Choosing the Correct Statistical Test in SAS, Stata, SPSS and R
- Learning Statistics with R
- Statistical Thinking for the 21st Century
- 1 Introduction | A Matrix Algebra Companion for Statistical Learning
- PsyTeachR
Bioinfo
- Bioinformatics Tutorials | Phil Chapman's Blog
- learn BioInfo - ROSALIND
- Living in an Ivory Basement
- ToolFinder
- Galaxy Training
Eco/Enviromental links
- ecocloud |
- Free and Open Access to Biodiversity Data | GBIF.org
- SunPy
- What is Dr Climate? | Dr Climate
- ZoaTrack - Free Animal Tracking Software
- Education | DataONE
- Macroeco: Ecological pattern analysis in Python — macroeco 1.0 documentation
- Atlas of Living Australia – Open access to Australia’s biodiversity data
- TERN - Australia's Land Ecosystem Observatory | Critical Data
Geospatial and Maps
- Geospatial data and metadata - ANDS
- Getting Started
- Queensland Globe
- Google Maps and R
- AURIN Home - AURIN. Australian Urban Research Infrastructure Network
Humanities, Arts and Social Sciences
- All Those Shapes — Google Arts & Culture
- Google Arts & Culture
- Google Expeditions
- Humanities Networked Infrastructure - HuNI
- Omeka
- Word Tree / Fernanda Viegas & Martin Wattenberg
- Text Mining with R
- PLOS Collections: Article collections published by the Public Library of Science
- Introduction to Cultural Analytics & Python — Introduction to Cultural Analytics & Python
- Welcome - GLAM Workbench
IT misc
- Atom
- Code Carabiners: Essential Protection Tools for Safe Programming - O'Reilly Radar
- Code for a Living - Stack Overflow Blog
- Hard Coding Concepts Explained with Simple Real-life Analogies
- CodeNewbie
- GNU Parallel tutorial
- Web designing tutorial list
- Insights - Stack Overflow Blog
Lessons and books misc
- Free Courses Online | Open2Study
- Quartz/bad-data-guide: An exhaustive reference to problems seen in real-world data along with suggestions on how to resolve them.
- Subjects - OpenStax
- Greg Wilson | DataCamp
- Browse Online Courses - FutureLearn
- Altmetric- social media tracking Publications
- Random Carpentries
- Open Textbook Library
- Digital Research Skills Australasia
- Materials - Digital Research Skills Australasia
- The Art Of Troubleshooting by Jason Maxham (March 22, 2021)
- 4 steps to troubleshooting (almost) any IT issue
- ResBazQld Keynotes 2021
Cheatsheets
- R Cheat Sheet and Guide for Graphical Parameters | FlowingData
- MiscCheatsheets
Open Data
- Data Access - Australian Space Data Analysis Facility