##fileformat=VCFv4.2
##FILTER=<ID=alt_allele_in_normal,Description="Evidence seen in the normal sample">
##FILTER=<ID=clustered_events,Description="Clustered events observed in the tumor">
##FILTER=<ID=germline_risk,Description="Evidence indicates this site is germline, not somatic">
##FILTER=<ID=homologous_mapping_event,Description="More than three events were observed in the tumor">
##FILTER=<ID=multi_event_alt_allele_in_normal,Description="Multiple events observed in tumor and normal">
##FILTER=<ID=panel_of_normals,Description="Seen in at least 2 samples in the panel of normals">
##FILTER=<ID=str_contraction,Description="Site filtered due to contraction of short tandem repeat region">
##FILTER=<ID=t_lod_fstar,Description="Tumor does not meet likelihood threshold">
##FILTER=<ID=triallelic_site,Description="Site filtered because more than two alt alleles pass tumor LOD">
##FORMAT=<ID=AD,Number=.,Type=Integer,Description="Allelic depths for the ref and alt alleles in the order listed">
##FORMAT=<ID=AF,Number=1,Type=Float,Description="Allele fraction of the event in the tumor">
##FORMAT=<ID=ALT_F1R2,Number=1,Type=Integer,Description="Count of reads in F1R2 pair orientation supporting the alternate allele">
##FORMAT=<ID=ALT_F2R1,Number=1,Type=Integer,Description="Count of reads in F2R1 pair orientation supporting the alternate allele">
##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Approximate read depth (reads with MQ=255 or with bad mates are filtered)">
##FORMAT=<ID=FOXOG,Number=1,Type=Float,Description="Fraction of alt reads indicating OxoG error">
##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##FORMAT=<ID=PGT,Number=1,Type=String,Description="Physical phasing haplotype information, describing how the alternate alleles are phased in relation to one another">
##FORMAT=<ID=PID,Number=1,Type=String,Description="Physical phasing ID information, where each unique ID within a given sample (but not across samples) connects records within a phasing group">
##FORMAT=<ID=PL,Number=G,Type=Integer,Description="Normalized, Phred-scaled likelihoods for genotypes as defined in the VCF specification">
##FORMAT=<ID=QSS,Number=A,Type=Integer,Description="Sum of base quality scores for each allele">
##FORMAT=<ID=REF_F1R2,Number=1,Type=Integer,Description="Count of reads in F1R2 pair orientation supporting the reference allele">
##FORMAT=<ID=REF_F2R1,Number=1,Type=Integer,Description="Count of reads in F2R1 pair orientation supporting the reference allele">
##GATKCommandLine.MuTect2=<ID=MuTect2,Version=3.5-0-g36282e4,Date="Mon Apr 18 17:34:40 CEST 2016",Epoch=1460993680507,CommandLineOptions="analysis_type=MuTect2 input_file=[_T.recal_reads.RGorderen.bam, _N.recal_reads.RGorderen.bam] showFullBamList=false read_buffer_size=null phone_home=AWS gatk_key=null tag=NA read_filter=[] disable_read_filter=[] intervals=null excludeIntervals=null interval_set_rule=UNION interval_merging=ALL interval_padding=0 reference_sequence=/home/projects/pr_46630/data/references/human_GRCh38/GCA_000001405.15_GRCh38_full_analysis_set.fa nonDeterministicRandomSeed=false disableDithering=false maxRuntime=-1 maxRuntimeUnits=MINUTES downsampling_type=BY_SAMPLE downsample_to_fraction=null downsample_to_coverage=1000 baq=OFF baqGapOpenPenalty=40.0 refactor_NDN_cigar_string=false fix_misencoded_quality_scores=false allow_potentially_misencoded_quality_scores=false useOriginalQualities=false defaultBaseQualities=-1 performanceLog=null BQSR=null quantize_quals=0 static_quantized_quals=null round_down_quantized=false disable_indel_quals=false emit_original_quals=false preserve_qscores_less_than=6 globalQScorePrior=-1.0 validation_strictness=SILENT remove_program_records=false keep_program_records=false sample_rename_mapping_file=null unsafe=null disable_auto_index_creation_and_locking_when_reading_rods=false no_cmdline_in_header=false sites_only=false never_trim_vcf_format_field=false bcf=false bam_compression=null simplifyBAM=false disable_bam_indexing=false generate_md5=false num_threads=1 num_cpu_threads_per_data_thread=28 num_io_threads=0 monitorThreadEfficiency=false num_bam_file_handles=null read_group_black_list=null pedigree=[] pedigreeString=[] pedigreeValidationType=STRICT allow_intervals_with_unindexed_bam=false generateShadowBCF=false variant_index_type=DYNAMIC_SEEK variant_index_parameter=-1 reference_window_stop=0 logging_level=INFO log_to_file=null help=false version=false m2debug=false artifact_detection_mode=false initial_tumor_lod=4.0 initial_normal_lod=0.5 tumor_lod=6.3 normal_lod=2.2 dbsnp_normal_lod=5.5 max_alt_alleles_in_normal_count=2 max_alt_alleles_in_normal_qscore_sum=20 max_alt_allele_in_normal_fraction=0.03 debug=false useFilteredReadsForAnnotations=false emitRefConfidence=NONE bamOutput=null bamWriterType=CALLED_HAPLOTYPES disableOptimizations=false annotateNDA=false heterozygosity=0.001 indel_heterozygosity=1.25E-4 standard_min_confidence_threshold_for_calling=30.0 standard_min_confidence_threshold_for_emitting=30.0 max_alternate_alleles=6 input_prior=[] sample_ploidy=2 genotyping_mode=DISCOVERY alleles=(RodBinding name= source=UNBOUND) contamination_fraction_to_filter=0.0 contamination_fraction_per_sample_file=null p_nonref_model=null exactcallslog=null output_mode=EMIT_VARIANTS_ONLY allSitePLs=false kmerSize=[10, 25] dontIncreaseKmerSizesForCycles=false allowNonUniqueKmersInRef=false numPruningSamples=1 recoverDanglingHeads=false doNotRecoverDanglingBranches=false minDanglingBranchLength=4 consensus=false maxNumHaplotypesInPopulation=128 errorCorrectKmers=false minPruning=2 debugGraphTransformations=false allowCyclesInKmerGraphToGeneratePaths=false graphOutput=null kmerLengthForReadErrorCorrection=25 minObservationsForKmerToBeSolid=20 gcpHMM=10 pair_hmm_implementation=VECTOR_LOGLESS_CACHING pair_hmm_sub_implementation=ENABLE_ALL always_load_vector_logless_PairHMM_lib=false phredScaledGlobalReadMismappingRate=45 noFpga=false debug_read_name=null MQ_filtering_level=20 cosmic=[(RodBinding name=cosmic source=/home/projects/pr_46630/data/references/human_GRCh38/cosmic/CosmicCodingMuts_chr_sorted.vcf)] normal_panel=[] dbsnp=(RodBinding name=dbsnp source=/home/projects/pr_46630/data/references/human_GRCh38/SNP_refs/1000G.snps.b38.vcf) comp=[] annotation=[DepthPerAlleleBySample, BaseQualitySumPerAlleleBySample, TandemRepeatAnnotator, OxoGReadCounts] excludeAnnotation=[SpanningDeletions] out=/home/projects/pr_46630/people/ambj/melanoma/TCGA/WXS/aligned_to_GRCh38/MuTect2_2/.mutect2.vcf dontTrimActiveRegions=false maxDiscARExtension=25 maxGGAARExtension=300 paddingAroundIndels=150 paddingAroundSNPs=20 keepRG=null min_base_quality_score=10 errorCorrectReads=false captureAssemblyFailureBAM=false dontUseSoftClippedBases=false justDetermineActiveRegions=false doNotRunPhysicalPhasing=false activityProfileOut=null activeRegionOut=null activeRegionIn=null activeRegionExtension=null forceActive=false activeRegionMaxSize=null bandPassSigma=null maxProbPropagationDistance=50 activeProbabilityThreshold=0.002 filter_reads_with_N_cigar=false filter_mismatching_base_and_quals=false filter_bases_not_stored=false">
##INFO=<ID=DB,Number=0,Type=Flag,Description="dbSNP Membership">
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##INFO=<ID=TLOD,Number=1,Type=String,Description="Tumor LOD score">
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##reference=file:///home/projects/pr_46630/data/references/human_GRCh38/GCA_000001405.15_GRCh38_full_analysis_set.fa
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	TUMOR	NORMAL
chr1	1213726	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.01;TLOD=4.43	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:32,2:0.071:1:1:0.500:1062,66:19:13	0/0:11,0:0.00:0:0:.:374,0:6:5
chr1	1218757	.	A	G	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=34.91;TLOD=4.05	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:223,3:0.015:1:2:0.667:7006,93:103:120	0/0:128,0:0.00:0:0:.:4062,0:63:65
chr1	1495725	.	A	G	.	alt_allele_in_normal;clustered_events;germline_risk	ECNT=2;HCNT=4;MAX_ED=60;MIN_ED=60;NLOD=1.98;TLOD=10.13	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:64,7:0.094:6:1:0.143:2050,235:34:30	0/0:31,2:0.063:2:0:0.00:999,64:17:14
chr1	1495785	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=2;HCNT=4;MAX_ED=60;MIN_ED=60;NLOD=3.98;TLOD=26.92	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:81,17:0.157:16:1:0.059:2496,523:41:40	0/0:34,2:0.057:2:0:0.00:1139,56:17:17
chr1	1520272	.	G	T	.	PASS	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=13.53;TLOD=10.99	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:138,7:0.056:4:3:0.571:4670,217:78:60	0/0:64,1:0.018:1:0:1.00:2168,31:23:41
chr1	1732392	rs3817856	C	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=12.39	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,4:0.500:4:0:0.00:137,129:3:1	0/0:7,0:0.00:0:0:.:234,0:4:3
chr1	1739098	.	C	T	.	alt_allele_in_normal	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=2.98;TLOD=30.88	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:41,16:0.264:9:7:0.438:1369,480:22:19	0/0:39,3:0.075:1:2:0.667:1310,99:19:20
chr1	1756375	.	C	T	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=8.42;TLOD=4.07	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:66,2:0.030:1:1:0.500:2284,70:31:35	0/0:28,0:0.00:0:0:.:950,0:11:17
chr1	1955420	.	C	T	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.91;TLOD=4.38	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:8,2:0.200:0:2:1.00:271,56:4:4	0/0:13,0:0.00:0:0:.:443,0:7:6
chr1	1956754	rs3820011	C	A	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.37;TLOD=39.28	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:22,14:0.406:5:9:0.643:666,457:10:12	0/0:31,2:0.067:2:0:0.00:977,67:20:11
chr1	2151019	rs262670	C	T	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=3;MAX_ED=.;MIN_ED=.;NLOD=0.534;TLOD=73.83	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:14,24:0.622:13:11:0.458:391,769:9:5	0/0:13,1:0.071:1:0:0.00:365,32:8:5
chr1	3425966	rs2244013	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=37.32	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:7,11:0.611:2:9:0.182:250,373:3:4	0/0:4,0:0.00:0:0:.:140,0:3:1
chr1	3796513	rs12759775	G	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.901;TLOD=7.75	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:0,2:1.00:1:1:0.500:0,68:0:0	0/0:4,0:0.00:0:0:.:115,0:2:2
chr1	3848491	rs12239253	C	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.80;TLOD=12.35	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,4:0.667:0:4:1.00:58,121:0:2	0/0:6,0:0.00:0:0:.:182,0:4:2
chr1	3857566	.	A	G	.	clustered_events;germline_risk	ECNT=2;HCNT=1;MAX_ED=8;MIN_ED=8;NLOD=2.11;TLOD=19.96	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:2,4:0.714:3:1:0.250:0|1:3857566_A_G:65,118:1:1	0/0:7,0:0.00:0:0:.:0|1:3857566_A_G:194,0:5:2
chr1	3857574	rs12723005	T	C	.	clustered_events;germline_risk	DB;ECNT=2;HCNT=1;MAX_ED=8;MIN_ED=8;NLOD=2.11;TLOD=26.10	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:4,7:0.636:4:3:0.571:0|1:3857566_A_G:118,236:2:2	0/0:7,0:0.00:0:0:.:0|1:3857566_A_G:214,0:5:2
chr1	5864980	rs11121682	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=15.12	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:8,5:0.385:2:3:0.400:227,165:3:5	0/0:7,0:0.00:0:0:.:200,0:2:5
chr1	6212753	rs2294711	C	T	.	alt_allele_in_normal	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=8.50;TLOD=141.80	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:76,57:0.403:26:31:0.544:2206,1848:34:42	0/0:71,3:0.046:1:2:0.667:2091,96:31:40
chr1	6469122	.	TTCC	T	.	alt_allele_in_normal;str_contraction	ECNT=1;HCNT=3;MAX_ED=.;MIN_ED=.;NLOD=2.34;RPA=8,7;RU=TCC;STR;TLOD=7.08	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:61,3:0.048:2:1:.:1991,91:33:28	0/0:45,4:0.082:3:1:.:1490,101:24:21
chr1	6475950	.	TCTC	T	.	alt_allele_in_normal;str_contraction;t_lod_fstar	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=11.39;RPA=6,5;RU=CTC;STR;TLOD=4.59	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:142,2:0.017:1:1:.:4563,66:73:69	0/0:63,2:0.019:0:2:.:2019,66:31:32
chr1	8656224	.	TTC	T	.	alt_allele_in_normal;clustered_events;str_contraction	ECNT=2;HCNT=10;MAX_ED=38;MIN_ED=38;NLOD=26.35;RPA=6,5;RU=TC;STR;TLOD=6.49	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:223,5:0.012:3:2:.:6625,166:118:82	0/0:124,3:0.013:1:2:.:3645,102:63:47
chr1	8656262	.	CTCTTTG	C	.	alt_allele_in_normal;clustered_events;str_contraction	ECNT=2;HCNT=15;MAX_ED=38;MIN_ED=38;NLOD=24.52;RPA=4,3;RU=TCTTTG;STR;TLOD=9.28	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:239,5:0.018:2:3:.:8161,174:137:102	0/0:116,2:0.018:2:0:.:4048,73:77:39
chr1	8949155	rs2274326	C	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.76;TLOD=23.59	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:3,7:0.700:4:3:0.429:98,229:0:3	0/0:6,0:0.00:0:0:.:171,0:3:3
chr1	8949347	rs2274327	C	T	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.74;TLOD=75.78	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:21,26:0.545:14:12:0.462:668,839:9:12	0/0:16,1:0.059:0:1:1.00:506,29:4:12
chr1	9756562	rs6680090	T	C	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=0.712;TLOD=71.21	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:22,26:0.543:18:8:0.692:708,760:8:14	0/0:24,2:0.080:1:1:0.500:768,59:8:16
chr1	10958516	rs12077098	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=12.43	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:3,4:0.571:3:1:0.750:104,126:3:0	0/0:4,0:0.00:0:0:.:136,0:0:4
chr1	10964296	rs6659231	A	G	.	clustered_events;germline_risk	DB;ECNT=2;HCNT=2;MAX_ED=28;MIN_ED=28;NLOD=3.31;TLOD=17.87	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:6,6:0.500:3:3:0.500:193,187:2:4	0/0:11,0:0.00:0:0:.:348,0:8:3
chr1	10964324	rs6659326	A	G	.	clustered_events;germline_risk	DB;ECNT=2;HCNT=2;MAX_ED=28;MIN_ED=28;NLOD=1.50;TLOD=9.37	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,3:0.600:3:0:0.00:66,94:1:1	0/0:5,0:0.00:0:0:.:164,0:3:2
chr1	11234417	rs718206	T	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.42;TLOD=34.97	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:9,11:0.550:4:7:0.364:305,357:3:6	0/0:18,0:0.00:0:0:.:604,0:11:7
chr1	11650504	rs9614	T	G	.	PASS	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=2.71;TLOD=37.93	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:9,12:0.600:8:4:0.667:252,381:5:4	0/0:11,0:0.00:0:0:.:353,0:6:5
chr1	11827316	.	T	TG	.	germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.80;RPA=6,7;RU=G;STR;TLOD=8.73	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:7,5:0.417:3:2:.:229,164:4:3	0/0:6,0:0.00:0:0:.:193,0:2:4
chr1	11836288	rs198402	T	C	.	germline_risk;t_lod_fstar	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=5.12	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:5,2:0.286:1:1:0.500:158,61:3:2	0/0:4,0:0.00:0:0:.:125,0:2:2
chr1	11838171	rs169158	T	C	.	clustered_events;germline_risk	DB;ECNT=2;HCNT=1;MAX_ED=10;MIN_ED=10;NLOD=1.51;TLOD=7.80	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:2,2:0.500:2:0:1.00:0|1:11838171_T_C:63,71:1:1	0/0:5,0:0.00:0:0:.:0|1:11838171_T_C:168,0:4:1
chr1	11838181	rs171983	G	A	.	clustered_events;germline_risk	DB;ECNT=2;HCNT=1;MAX_ED=10;MIN_ED=10;NLOD=1.51;TLOD=7.80	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:2,2:0.500:2:0:1.00:0|1:11838171_T_C:61,64:1:1	0/0:5,0:0.00:0:0:.:0|1:11838171_T_C:184,0:4:1
chr1	11838792	rs198409	T	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.42;TLOD=57.11	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:16,17:0.515:7:10:0.412:522,590:12:4	0/0:18,0:0.00:0:0:.:607,0:9:9
chr1	11840328	rs198411	C	T	.	alt_allele_in_normal;clustered_events;germline_risk	DB;ECNT=2;HCNT=2;MAX_ED=52;MIN_ED=52;NLOD=1.74;TLOD=27.64	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:17,10:0.370:5:5:0.500:585,306:4:13	0/0:16,1:0.059:0:1:1.00:544,29:11:5
chr1	11840380	rs198412	T	C	.	clustered_events;germline_risk	DB;ECNT=2;HCNT=2;MAX_ED=52;MIN_ED=52;NLOD=1.50;TLOD=12.11	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:6,4:0.400:3:1:0.750:193,132:2:4	0/0:5,0:0.00:0:0:.:157,0:4:1
chr1	11858870	.	TCTG	T	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=3.57;RPA=7,6;RU=CTG;STR;TLOD=4.89	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:47,2:0.028:1:1:.:646,63:11:9	0/0:26,1:0.022:0:1:.:542,33:7:10
chr1	11879213	.	T	TCCCTTCAGCCA	.	germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.27;RPA=1,2;RU=CCCTTCAGCCA;STR;TLOD=26.36	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:11,7:0.412:5:2:.:349,223:1:10	0/0:4,0:0.00:0:0:.:128,0:0:4
chr1	12828709	.	G	C	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=3;HCNT=6;MAX_ED=6;MIN_ED=2;NLOD=44.60;TLOD=6.22	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:293,3:0.010:1:2:0.333:0|1:12828709_G_C:10048,95:129:164	0/0:190,4:0.021:0:4:0.00:0|1:12828709_G_C:6525,131:93:97
chr1	12828711	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=3;HCNT=6;MAX_ED=6;MIN_ED=2;NLOD=36.37;TLOD=7.62	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:302,3:0.016:1:2:0.667:0|1:12828709_G_C:9640,92:134:168	0/0:195,4:0.039:0:4:1.00:0|1:12828709_G_C:6198,128:94:101
chr1	12828715	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=3;HCNT=6;MAX_ED=6;MIN_ED=2;NLOD=29.27;TLOD=8.40	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:319,6:0.019:3:3:0.500:0|1:12828709_G_C:10632,191:144:175	0/0:196,10:0.049:4:6:0.600:0|1:12828709_G_C:6609,314:93:103
chr1	12861477	.	T	C	.	alt_allele_in_normal	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=20.90;TLOD=14.62	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:208,12:0.057:9:3:0.750:6803,366:117:91	0/0:114,16:0.123:9:7:0.563:3730,531:63:51
chr1	12893272	.	T	C	.	alt_allele_in_normal	ECNT=1;HCNT=3;MAX_ED=.;MIN_ED=.;NLOD=7.70;TLOD=16.81	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:266,12:0.046:7:5:0.583:8821,415:141:125	0/0:170,17:0.095:8:9:0.471:5652,573:87:83
chr1	12893440	.	T	A	.	alt_allele_in_normal	ECNT=1;HCNT=8;MAX_ED=.;MIN_ED=.;NLOD=7.98;TLOD=10.62	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:281,5:0.019:4:1:0.800:9167,171:140:141	0/0:183,16:0.088:6:10:0.375:5982,542:102:81
chr1	12941455	.	G	T	.	alt_allele_in_normal	ECNT=1;HCNT=8;MAX_ED=.;MIN_ED=.;NLOD=8.44;TLOD=9.77	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:284,9:0.033:4:5:0.444:9779,292:129:155	0/0:199,15:0.074:10:5:0.667:6731,506:94:105
chr1	13319490	.	C	G	.	alt_allele_in_normal	ECNT=1;HCNT=8;MAX_ED=.;MIN_ED=.;NLOD=31.53;TLOD=7.24	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:320,10:0.031:6:4:0.400:11065,347:176:144	0/0:289,32:0.094:20:12:0.375:9870,1071:132:157
chr1	13342598	.	A	G	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=29.21;TLOD=4.16	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:215,4:0.020:2:2:0.500:7012,134:95:120	0/0:117,1:8.850e-03:1:0:0.00:3856,33:62:55
chr1	13391785	.	A	G	.	PASS	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=3.61;TLOD=8.36	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:25,4:0.138:2:2:0.500:797,124:10:15	0/0:12,0:0.00:0:0:.:383,0:4:8
chr1	13391973	.	T	C	.	alt_allele_in_normal	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=7.05;TLOD=7.67	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:238,8:0.035:4:4:0.500:7565,276:110:128	0/0:97,6:0.053:4:2:0.667:3114,205:45:52
chr1	13418094	.	T	C	.	t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=35.46;TLOD=4.58	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:237,3:0.013:1:2:0.333:7826,104:122:115	0/0:119,0:0.00:0:0:.:3960,0:58:61
chr1	13421340	.	G	T	.	alt_allele_in_normal;germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.78;TLOD=47.75	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:22,16:0.421:10:6:0.625:754,514:9:13	0/0:29,2:0.065:2:0:1.00:978,66:18:11
chr1	13732900	rs33969518	T	C	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.939;TLOD=41.58	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:8,12:0.600:6:6:0.500:268,417:5:3	0/0:17,1:0.059:1:0:1.00:564,37:9:8
chr1	14478317	.	AGAAG	A	.	alt_allele_in_normal;str_contraction;t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=7.22;RPA=5,4;RU=GAAG;STR;TLOD=4.95	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:84,2:0.025:2:0:.:2623,64:42:42	0/0:53,2:0.037:1:1:.:1649,67:35:18
chr1	15928646	.	GGA	G	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=18.30;RPA=6,5;RU=GA;STR;TLOD=4.38	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:121,3:0.026:1:2:.:4033,95:60:61	0/0:65,0:0.00:0:0:.:2208,0:30:35
chr1	15988290	rs848297	A	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=18.91	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,6:0.833:2:4:0.667:34,213:0:1	0/0:5,0:0.00:0:0:.:169,0:2:3
chr1	16004321	rs1763617	C	T	.	PASS	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.91;TLOD=9.33	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:16,4:0.200:3:1:0.250:542,118:10:6	0/0:17,0:0.00:0:0:.:566,0:11:6
chr1	16015855	rs761759	A	T	.	clustered_events;germline_risk	DB;ECNT=2;HCNT=2;MAX_ED=69;MIN_ED=69;NLOD=3.31;TLOD=17.78	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:9,6:0.400:4:2:0.333:264,193:5:4	0/0:11,0:0.00:0:0:.:325,0:4:7
chr1	16015924	rs761760	A	G	.	clustered_events;germline_risk;t_lod_fstar	DB;ECNT=2;HCNT=2;MAX_ED=69;MIN_ED=69;NLOD=1.81;TLOD=5.70	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,2:0.333:1:1:0.500:134,64:2:2	0/0:6,0:0.00:0:0:.:200,0:4:2
chr1	16018130	rs945417	C	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=16.20	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,5:0.556:2:3:0.600:144,165:3:1	0/0:3,0:0.00:0:0:.:103,0:1:2
chr1	16024642	.	C	G	.	clustered_events;homologous_mapping_event	ECNT=3;HCNT=6;MAX_ED=138;MIN_ED=69;NLOD=3.01;TLOD=23.10	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:5,7:0.583:6:1:0.143:171,253:2:3	0/0:10,0:0.00:0:0:.:351,0:4:6
chr1	16024711	rs9442215	C	T	.	alt_allele_in_normal;clustered_events;germline_risk	DB;ECNT=3;HCNT=4;MAX_ED=138;MIN_ED=69;NLOD=1.69;TLOD=77.83	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:20,25:0.545:13:12:0.480:663,835:12:8	0/0:42,3:0.070:2:1:0.333:1417,100:21:21
chr1	16024780	.	A	G	.	alt_allele_in_normal;clustered_events	ECNT=3;HCNT=6;MAX_ED=138;MIN_ED=69;NLOD=11.41;TLOD=122.32	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:55,48:0.489:29:19:0.396:1777,1445:29:26	0/0:75,3:0.031:2:1:0.333:2454,98:43:32
chr1	16026442	rs1010069	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.91;TLOD=29.54	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:11,10:0.500:6:4:0.600:386,310:5:6	0/0:13,0:0.00:0:0:.:448,0:6:7
chr1	16031816	.	A	G	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=3;HCNT=10;MAX_ED=37;MIN_ED=12;NLOD=5.75;TLOD=4.77	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:98,2:0.021:0:2:1.00:0|1:16031816_A_G:3063,70:50:48	0/0:48,2:0.041:2:0:0.00:0|1:16031816_A_G:1465,71:27:21
chr1	16031828	.	C	T	.	alt_allele_in_normal;clustered_events;germline_risk;t_lod_fstar	ECNT=3;HCNT=10;MAX_ED=37;MIN_ED=12;NLOD=1.27;TLOD=4.80	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:100,2:0.021:0:2:1.00:0|1:16031816_A_G:3395,67:50:50	0/0:48,2:0.064:2:0:0.00:0|1:16031816_A_G:1634,68:26:22
chr1	16031853	.	T	C	.	clustered_events;multi_event_alt_allele_in_normal	ECNT=3;HCNT=10;MAX_ED=37;MIN_ED=12;NLOD=9.67;TLOD=6.60	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:87,3:0.037:0:3:0.00:0|1:16031816_A_G:2817,99:43:44	0/0:47,1:0.022:1:0:1.00:0|1:16031816_A_G:1504,34:25:22
chr1	16033762	.	C	T	.	germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=6.73	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:8,3:0.273:1:2:0.667:274,96:1:7	0/0:4,0:0.00:0:0:.:134,0:2:2
chr1	16035380	.	A	G	.	germline_risk	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=6.47	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:12,3:0.214:1:2:0.667:380,90:9:3	0/0:7,0:0.00:0:0:.:224,0:3:4
chr1	16036217	.	C	T	.	clustered_events	ECNT=2;HCNT=1;MAX_ED=10;MIN_ED=10;NLOD=3.01;TLOD=45.14	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:8,12:0.480:7:5:0.417:0|1:16036217_C_T:270,400:4:4	0/0:9,0:0.00:0:0:.:0|1:16036217_C_T:301,0:3:6
chr1	16036227	.	G	A	.	alt_allele_in_normal;clustered_events;germline_risk	ECNT=2;HCNT=1;MAX_ED=10;MIN_ED=10;NLOD=2.04;TLOD=9.59	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:27,5:0.152:3:2:0.600:1|0:16036217_C_T:930,142:14:13	0/0:17,1:0.056:1:0:1.00:1|0:16036217_C_T:577,29:9:8
chr1	16036547	.	C	T	.	alt_allele_in_normal;germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.84;TLOD=11.95	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:31,7:0.143:3:4:0.571:1061,224:10:21	0/0:17,1:0.056:1:0:0.00:594,31:8:9
chr1	16036663	.	G	A	.	PASS	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=9.57;TLOD=7.33	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:61,4:0.063:1:3:0.250:1838,125:21:40	0/0:44,1:0.023:0:1:0.00:1255,31:21:23
chr1	16048127	rs2863440	C	G	.	clustered_events;germline_risk	DB;ECNT=2;HCNT=4;MAX_ED=34;MIN_ED=34;NLOD=1.80;TLOD=21.12	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:8,7:0.467:4:3:0.429:226,225:3:5	0/0:6,0:0.00:0:0:.:161,0:2:4
chr1	16048161	rs2902490	A	G	.	clustered_events;germline_risk	DB;ECNT=2;HCNT=4;MAX_ED=34;MIN_ED=34;NLOD=2.11;TLOD=7.59	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:6,3:0.333:1:2:0.667:195,88:3:3	0/0:7,0:0.00:0:0:.:221,0:2:5
chr1	16049343	rs7545067	C	G	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.56;TLOD=41.80	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:18,13:0.448:5:8:0.615:629,443:10:8	0/0:20,1:0.050:1:0:0.00:690,30:11:9
chr1	16056834	.	T	TC	.	clustered_events;germline_risk;multi_event_alt_allele_in_normal	ECNT=2;HCNT=4;MAX_ED=7;MIN_ED=7;NLOD=0.926;RPA=6,7;RU=C;STR;TLOD=14.95	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:15,5:0.263:5:0:.:0|1:16056834_T_TC:433,111:8:7	0/0:11,2:0.154:2:0:.:0|1:16056834_T_TC:339,7:2:9
chr1	16056841	.	G	C	.	alt_allele_in_normal;clustered_events;germline_risk	ECNT=2;HCNT=4;MAX_ED=7;MIN_ED=7;NLOD=2.11;TLOD=17.26	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:19,7:0.261:6:1:0.857:0|1:16056834_T_TC:454,227:10:9	0/0:16,2:0.118:2:0:1.00:0|1:16056834_T_TC:446,38:6:10
chr1	16059485	rs3884058	G	A	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.54;TLOD=36.68	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:24,13:0.382:9:4:0.692:801,403:15:9	0/0:17,1:0.056:1:0:1.00:602,34:11:6
chr1	16059810	.	G	GC	.	alt_allele_in_normal;t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=4.50;RPA=5,6;RU=C;STR;TLOD=4.04	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:24,3:0.111:1:2:.:791,82:11:13	0/0:24,1:0.042:0:1:.:829,32:9:15
chr1	16062039	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=3;HCNT=1;MAX_ED=46;MIN_ED=22;NLOD=5.72;TLOD=18.69	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:15,6:0.261:1:5:0.833:0|1:16062039_C_T:510,174:7:8	0/0:22,1:0.043:1:0:0.00:0|1:16062039_C_T:747,34:14:8
chr1	16062061	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=3;HCNT=1;MAX_ED=46;MIN_ED=22;NLOD=8.43;TLOD=45.88	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:21,13:0.371:6:7:0.538:0|1:16062039_C_T:729,374:11:10	0/0:30,1:0.031:1:0:0.00:0|1:16062039_C_T:985,31:16:14
chr1	16062085	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=3;HCNT=1;MAX_ED=46;MIN_ED=22;NLOD=7.21;TLOD=72.50	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:35,21:0.400:8:13:0.619:0|1:16062039_C_T:1119,636:18:17	0/0:41,2:0.053:2:0:0.00:0|1:16062039_C_T:1261,62:21:20
chr1	16125272	rs3754334	G	A	.	alt_allele_in_normal	DB;ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=3.44;TLOD=87.81	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:49,37:0.439:17:20:0.459:1533,1198:24:25	0/0:28,1:0.043:1:0:1.00:915,30:15:13
chr1	16550967	.	T	C	.	alt_allele_in_normal	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=11.71;TLOD=55.60	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:93,24:0.217:14:10:0.583:3078,787:45:48	0/0:80,2:0.028:1:1:0.500:2612,69:44:36
chr1	16565461	.	C	T	.	alt_allele_in_normal	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.92;TLOD=10.46	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:37,6:0.143:3:3:0.500:1194,196:11:26	0/0:92,3:0.032:2:1:0.333:3073,101:41:51
chr1	16576399	.	A	T	.	clustered_events;multi_event_alt_allele_in_normal;t_lod_fstar	ECNT=4;HCNT=6;MAX_ED=94;MIN_ED=49;NLOD=7.39;TLOD=6.04	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:29,8:0.189:2:0:0.00:33,68:1:0	0/0:79,3:0.036:0:0:.:53,0:2:0
chr1	16576448	.	T	C	.	alt_allele_in_normal;clustered_events	ECNT=4;HCNT=11;MAX_ED=94;MIN_ED=49;NLOD=9.69;TLOD=12.66	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:230,9:0.038:3:6:0.333:7599,300:131:99	0/0:321,22:0.066:10:12:0.455:10641,735:162:159
chr1	16576487	.	G	T	.	clustered_events;multi_event_alt_allele_in_normal	ECNT=4;HCNT=7;MAX_ED=94;MIN_ED=49;NLOD=42.47;TLOD=6.33	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:179,5:0.030:2:3:0.400:6032,163:101:78	0/0:291,1:3.597e-03:1:0:1.00:9878,34:155:136
chr1	16576493	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=4;HCNT=12;MAX_ED=94;MIN_ED=49;NLOD=8.08;TLOD=7.10	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:153,8:0.055:5:3:0.375:4552,245:84:69	0/0:249,13:0.053:5:8:0.615:7260,413:139:110
chr1	16579555	.	C	T	.	alt_allele_in_normal;germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.04;TLOD=7.82	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:10,4:0.308:3:1:0.250:344,136:7:3	0/0:19,1:0.050:1:0:0.00:657,35:4:15
chr1	16581396	.	T	C	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=5;HCNT=4;MAX_ED=143;MIN_ED=7;NLOD=83.92;TLOD=4.35	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:684,6:8.759e-03:1:5:0.167:22893,202:375:309	0/0:398,4:0.010:3:1:0.750:13278,136:214:184
chr1	16581403	.	T	C	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=5;HCNT=6;MAX_ED=143;MIN_ED=7;NLOD=57.00;TLOD=5.41	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:723,6:8.798e-03:2:4:0.333:24095,195:387:336	0/0:401,50:0.117:30:20:0.600:13288,1676:212:189
chr1	16581451	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=5;HCNT=10;MAX_ED=143;MIN_ED=7;NLOD=57.49;TLOD=139.31	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:797,88:0.105:47:41:0.466:27319,2814:424:373	0/0:636,21:0.032:8:13:0.619:21997,676:349:287
chr1	16581512	.	G	C	.	alt_allele_in_normal;clustered_events	ECNT=5;HCNT=12;MAX_ED=143;MIN_ED=7;NLOD=14.81;TLOD=98.51	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:440,51:0.104:27:24:0.529:14817,1746:220:220	0/0:296,18:0.056:8:10:0.444:9847,602:170:126
chr1	16581539	.	C	G	.	alt_allele_in_normal;clustered_events	ECNT=5;HCNT=11;MAX_ED=143;MIN_ED=7;NLOD=31.59;TLOD=53.07	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:317,34:0.097:15:19:0.559:10838,1143:157:160	0/0:166,13:0.073:7:6:0.462:5669,440:85:81
chr1	16583568	.	C	T	.	alt_allele_in_normal	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=84.25;TLOD=12.93	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:553,15:0.026:5:10:0.667:18549,510:275:278	0/0:370,8:0.021:4:4:0.500:12497,262:196:174
chr1	16587089	.	A	C	.	alt_allele_in_normal;clustered_events	ECNT=3;HCNT=8;MAX_ED=93;MIN_ED=28;NLOD=24.38;TLOD=158.64	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:501,97:0.171:58:39:0.402:16479,2978:294:207	0/0:367,17:0.041:5:12:0.706:12103,536:193:174
chr1	16587117	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=3;HCNT=12;MAX_ED=93;MIN_ED=28;NLOD=15.21;TLOD=198.19	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:585,108:0.168:61:47:0.565:20529,3555:333:252	0/0:355,20:0.057:8:12:0.400:12409,662:187:168
chr1	16587182	.	T	C	.	alt_allele_in_normal;clustered_events	ECNT=3;HCNT=12;MAX_ED=93;MIN_ED=28;NLOD=7.25;TLOD=33.70	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:185,19:0.098:9:10:0.474:6048,531:106:79	0/0:181,31:0.151:18:13:0.581:5926,886:104:77
chr1	16587700	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=5;HCNT=11;MAX_ED=144;MIN_ED=1;NLOD=57.00;TLOD=10.47	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:279,9:0.032:4:5:0.556:9586,286:154:125	0/0:334,18:0.052:11:7:0.389:11488,591:170:164
chr1	16587701	.	T	C	.	alt_allele_in_normal;clustered_events	ECNT=5;HCNT=13;MAX_ED=144;MIN_ED=1;NLOD=44.65;TLOD=46.47	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:260,31:0.106:17:14:0.548:8697,1015:143:117	0/0:340,17:0.047:11:6:0.647:11346,573:173:167
chr1	16587708	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=5;HCNT=18;MAX_ED=144;MIN_ED=1;NLOD=57.90;TLOD=6.93	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:310,6:0.012:3:3:0.500:10225,190:170:140	0/0:353,21:0.031:8:13:0.619:11724,690:186:167
chr1	16587837	.	A	C	.	alt_allele_in_normal;clustered_events	ECNT=5;HCNT=10;MAX_ED=144;MIN_ED=1;NLOD=58.05;TLOD=17.24	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:264,12:0.044:7:5:0.417:8117,409:136:128	0/0:231,3:0.013:1:2:0.667:6903,97:110:121
chr1	16587844	.	G	C	.	alt_allele_in_normal;clustered_events	ECNT=5;HCNT=17;MAX_ED=144;MIN_ED=1;NLOD=38.86;TLOD=41.83	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:237,25:0.095:11:14:0.440:7951,864:127:110	0/0:194,9:0.044:4:5:0.444:6532,315:90:104
chr1	16619075	.	A	G	.	alt_allele_in_normal	ECNT=1;HCNT=6;MAX_ED=.;MIN_ED=.;NLOD=96.60;TLOD=74.83	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:753,36:0.049:21:15:0.417:24010,1227:401:352	0/0:487,13:0.027:4:9:0.692:15588,447:254:233
chr1	16619841	.	G	A	.	clustered_events;germline_risk	ECNT=2;HCNT=20;MAX_ED=60;MIN_ED=60;NLOD=2.11;TLOD=16.26	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:21,6:0.231:2:4:0.333:605,195:10:11	0/0:8,0:0.00:0:0:.:230,0:7:1
chr1	16619901	.	C	T	.	alt_allele_in_normal;clustered_events;germline_risk	ECNT=2;HCNT=30;MAX_ED=60;MIN_ED=60;NLOD=0.973;TLOD=14.15	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:39,7:0.146:2:5:0.714:1353,218:15:24	0/0:27,2:0.074:2:0:0.00:936,62:13:14
chr1	16622014	.	C	T	.	alt_allele_in_normal	ECNT=1;HCNT=3;MAX_ED=.;MIN_ED=.;NLOD=6.29;TLOD=45.14	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:82,20:0.192:11:9:0.450:2739,608:41:41	0/0:43,2:0.044:1:1:0.500:1486,63:27:16
chr1	16623766	.	G	C	.	PASS	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.41;TLOD=7.64	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:26,3:0.103:1:2:0.333:899,104:15:11	0/0:8,0:0.00:0:0:.:275,0:6:2
chr1	16627462	.	G	A	.	germline_risk;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.602;TLOD=5.30	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,2:0.333:1:1:0.500:136,66:2:2	0/0:5,0:0.00:0:0:.:167,0:4:1
chr1	16632199	.	G	A	.	PASS	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=2.41;TLOD=11.37	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:14,4:0.222:3:1:0.750:493,136:9:5	0/0:8,0:0.00:0:0:.:279,0:4:4
chr1	16646657	.	A	G	.	alt_allele_in_normal;clustered_events	ECNT=4;HCNT=4;MAX_ED=32;MIN_ED=3;NLOD=5.65;TLOD=42.59	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:46,16:0.293:9:7:0.438:1370,442:26:20	0/0:32,3:0.091:2:1:0.333:978,86:19:13
chr1	16646660	.	C	G	.	alt_allele_in_normal;clustered_events	ECNT=4;HCNT=2;MAX_ED=32;MIN_ED=3;NLOD=6.99;TLOD=7.33	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:64,2:0.048:1:1:0.500:0|1:16646660_C_G:2062,54:35:29	0/0:36,2:0.081:1:1:0.500:0|1:16646660_C_G:1202,58:22:14
chr1	16646664	.	A	T	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=4;HCNT=2;MAX_ED=32;MIN_ED=3;NLOD=7.54;TLOD=5.12	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:66,3:0.031:2:1:0.333:0|1:16646660_C_G:2027,97:36:30	0/0:33,3:0.077:2:1:0.333:0|1:16646660_C_G:980,100:20:13
chr1	16646689	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=4;HCNT=3;MAX_ED=32;MIN_ED=3;NLOD=4.85;TLOD=34.60	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:44,14:0.250:7:7:0.500:1499,434:22:22	0/0:34,2:0.059:0:2:0.00:1171,59:20:14
chr1	16646893	.	C	T	.	alt_allele_in_normal	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.77;TLOD=9.87	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:13,4:0.235:2:2:0.500:384,123:8:5	0/0:51,2:0.037:1:1:0.500:1461,65:28:23
chr1	16647526	.	G	A	.	alt_allele_in_normal	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=2.44;TLOD=20.21	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:17,9:0.346:5:4:0.556:549,283:11:6	0/0:22,2:0.080:1:1:0.500:749,64:12:10
chr1	16647761	.	G	C	.	PASS	ECNT=1;HCNT=24;MAX_ED=.;MIN_ED=.;NLOD=5.71;TLOD=15.04	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:12,7:0.389:4:3:0.571:329,236:6:6	0/0:21,0:0.00:0:0:.:587,0:10:11
chr1	16648171	.	C	T	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=2;HCNT=8;MAX_ED=79;MIN_ED=79;NLOD=7.22;TLOD=5.15	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:25,3:0.103:3:0:0.00:688,95:13:12	0/0:37,2:0.050:2:0:0.00:1090,60:16:21
chr1	16648250	.	G	A	.	clustered_events;germline_risk;t_lod_fstar	ECNT=2;HCNT=16;MAX_ED=79;MIN_ED=79;NLOD=1.20;TLOD=5.32	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,2:0.667:2:0:1.00:36,66:0:1	0/0:10,0:0.00:0:0:.:341,0:7:3
chr1	16649131	.	G	C	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.82;TLOD=5.20	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:32,4:0.086:2:2:0.500:1104,139:17:15	0/0:20,0:0.00:0:0:.:678,0:11:9
chr1	16649229	.	GC	G	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.61;RPA=3,2;RU=C;STR;TLOD=5.86	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:35,3:0.079:1:2:.:1191,86:20:15	0/0:41,0:0.00:0:0:.:1423,0:26:15
chr1	16649787	.	T	C	.	alt_allele_in_normal	ECNT=1;HCNT=8;MAX_ED=.;MIN_ED=.;NLOD=7.28;TLOD=16.22	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:77,8:0.094:5:3:0.625:2486,275:27:50	0/0:91,3:0.033:1:2:0.333:2943,105:43:48
chr1	16650074	.	G	A	.	alt_allele_in_normal;t_lod_fstar	ECNT=1;HCNT=7;MAX_ED=.;MIN_ED=.;NLOD=6.77;TLOD=4.42	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:35,3:0.081:2:1:0.667:1193,97:16:19	0/0:43,2:0.047:1:1:0.500:1434,66:19:24
chr1	16707645	.	C	G	.	germline_risk	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=9.61	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:8,4:0.333:2:2:0.500:259,128:4:4	0/0:5,0:0.00:0:0:.:168,0:3:2
chr1	16719866	.	A	T	.	germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=20.79	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:15,7:0.318:3:4:0.571:457,237:11:4	0/0:4,0:0.00:0:0:.:124,0:1:3
chr1	16719944	.	C	A	.	PASS	ECNT=1;HCNT=12;MAX_ED=.;MIN_ED=.;NLOD=8.43;TLOD=38.63	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:79,16:0.176:6:10:0.625:2612,495:32:47	0/0:28,0:0.00:0:0:.:954,0:13:15
chr1	16758453	.	A	C	.	PASS	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=9.89;TLOD=7.33	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:53,6:0.100:3:3:0.500:1706,186:23:30	0/0:46,1:0.024:0:1:1.00:1491,35:21:25
chr1	16761112	.	G	A	.	alt_allele_in_normal;germline_risk	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.44;TLOD=23.39	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:42,10:0.204:6:4:0.600:1399,331:25:17	0/0:21,1:0.045:1:0:1.00:691,32:8:13
chr1	16856727	.	G	A	.	PASS	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.45;TLOD=11.81	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:15,6:0.286:3:3:0.500:525,198:5:10	0/0:35,1:0.028:1:0:1.00:1239,33:15:20
chr1	16954508	rs2076606	T	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=7.14	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:6,3:0.333:2:1:0.667:195,82:1:5	0/0:4,0:0.00:0:0:.:130,0:4:0
chr1	16970794	rs9435656	C	T	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.54;TLOD=41.25	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:21,18:0.429:9:9:0.500:735,542:13:8	0/0:26,1:0.042:0:1:1.00:896,32:7:19
chr1	17027878	.	GGAA	G	.	alt_allele_in_normal;germline_risk;str_contraction;t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=0.902;RPA=8,7;RU=GAA;STR;TLOD=5.51	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:19,2:0.095:1:1:.:646,68:4:15	0/0:16,1:0.059:1:0:.:540,34:10:6
chr1	17230544	rs10888010	T	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=36.43	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:5,12:0.688:7:5:0.583:164,375:3:2	0/0:7,0:0.00:0:0:.:229,0:6:1
chr1	17381106	rs6669650	T	C	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.24;TLOD=24.68	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:6,9:0.571:2:7:0.222:196,286:3:3	0/0:16,1:0.067:0:1:0.00:522,28:6:10
chr1	17412074	.	AC	A	.	alt_allele_in_normal	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.62;RPA=3,2;RU=C;STR;TLOD=43.19	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:29,16:0.364:10:6:.:920,513:14:15	0/0:28,1:0.037:0:1:.:866,32:18:10
chr1	17687587	.	G	A	.	PASS	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=7.76;TLOD=79.80	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:47,31:0.415:17:14:0.548:1419,972:23:24	0/0:44,1:0.026:0:1:0.00:1289,31:15:29
chr1	18480845	rs2992756	T	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=10.05	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:5,4:0.444:2:2:0.500:154,105:1:4	0/0:6,0:0.00:0:0:.:190,0:1:5
chr1	19251698	rs2294942	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=7.65	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:0,2:1.00:0:2:0.00:0,67:0:0	0/0:4,0:0.00:0:0:.:137,0:1:3
chr1	19305838	rs3828102	T	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=19.46	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:6,6:0.500:1:5:0.167:194,205:4:2	0/0:4,0:0.00:0:0:.:132,0:2:2
chr1	19507719	rs12041788	C	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=8.85	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,3:0.500:1:2:0.667:135,94:3:1	0/0:4,0:0.00:0:0:.:142,0:1:3
chr1	19678829	.	CGT	C	.	alt_allele_in_normal;str_contraction;t_lod_fstar	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=3.14;RPA=7,6;RU=GT;STR;TLOD=4.77	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:75,3:0.038:2:1:.:2441,100:45:30	0/0:32,2:0.059:1:1:.:1044,66:12:20
chr1	21003600	.	T	C	.	t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=4.82;TLOD=4.09	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:22,3:0.095:0:3:0.00:700,91:13:9	0/0:19,0:0.00:0:0:.:621,0:10:9
chr1	21703696	rs829372	T	C	.	germline_risk	DB;ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=2.41;TLOD=24.37	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:11,9:0.450:4:5:0.444:359,261:6:5	0/0:8,0:0.00:0:0:.:259,0:4:4
chr1	21831870	rs4654771	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.82;TLOD=27.23	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:13,11:0.409:3:8:0.273:449,355:9:4	0/0:17,0:0.00:0:0:.:568,0:8:9
chr1	21983742	.	C	T	.	alt_allele_in_normal;t_lod_fstar	ECNT=1;HCNT=6;MAX_ED=.;MIN_ED=.;NLOD=16.07;TLOD=4.87	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:159,3:0.020:0:3:1.00:5065,98:74:85	0/0:99,3:0.033:1:2:0.667:3139,96:57:42
chr1	22005826	.	G	A	.	alt_allele_in_normal;germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.937;TLOD=14.31	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:76,7:0.090:4:3:0.571:2543,217:40:36	0/0:49,4:0.078:1:3:0.250:1659,127:28:21
chr1	22569505	rs2273099	T	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.71;TLOD=11.51	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:5,4:0.444:3:1:0.750:160,123:3:2	0/0:9,0:0.00:0:0:.:291,0:4:5
chr1	22589181	rs56044578	G	A	.	alt_allele_in_normal;clustered_events	DB;ECNT=2;HCNT=2;MAX_ED=79;MIN_ED=79;NLOD=3.93;TLOD=136.23	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:41,54:0.554:26:28:0.481:1383,1662:17:24	0/0:38,2:0.054:0:2:0.00:1224,62:18:20
chr1	22589260	rs606002	T	C	.	alt_allele_in_normal;clustered_events	DB;ECNT=2;HCNT=3;MAX_ED=79;MIN_ED=79;NLOD=5.19;TLOD=135.12	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:33,46:0.569:20:26:0.435:1066,1541:16:17	0/0:42,2:0.047:0:2:0.00:1381,68:15:27
chr1	22589365	rs76452513	C	T	.	alt_allele_in_normal	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=5.39;TLOD=149.07	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:46,55:0.523:24:31:0.564:1595,1889:21:25	0/0:45,3:0.045:1:2:0.667:1574,104:24:21
chr1	23030371	rs10799788	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=8.82	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:3,3:0.500:1:2:0.333:109,92:2:1	0/0:6,0:0.00:0:0:.:216,0:3:3
chr1	23044531	.	C	T	.	germline_risk;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=4.46	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:12,2:0.143:1:1:0.500:405,60:5:7	0/0:6,0:0.00:0:0:.:210,0:2:4
chr1	23059333	.	CTT	C	.	germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=13.86	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:16,4:0.222:1:3:.:555,129:10:6	0/0:5,0:0.00:0:0:.:179,0:1:4
chr1	23192984	rs623988	C	T	.	germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=2.71;TLOD=8.33	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:8,3:0.273:3:0:0.00:271,97:2:6	0/0:9,0:0.00:0:0:.:294,0:4:5
chr1	23779866	.	T	C	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=14.75;TLOD=4.32	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:74,1:0.028:1:0:1.00:2495,36:42:32	0/0:53,0:0.00:0:0:.:1790,0:28:25
chr1	23796496	rs760941	C	T	.	PASS	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.02;TLOD=102.09	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:36,41:0.528:25:16:0.390:1110,1138:23:13	0/0:22,0:0.00:0:0:.:703,0:12:10
chr1	24670194	.	C	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=33.10;TLOD=4.07	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:236,3:0.013:2:1:0.333:8137,97:120:116	0/0:112,0:0.00:0:0:.:3902,0:42:70
chr1	25454398	.	A	ATG	.	alt_allele_in_normal;germline_risk	ECNT=1;HCNT=3;MAX_ED=.;MIN_ED=.;NLOD=1.93;RPA=1,2;RU=TG;STR;TLOD=7.92	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:21,12:0.355:10:2:.:655,357:15:6	0/0:22,4:0.154:4:0:.:703,134:14:8
chr1	25554876	.	A	G	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=7.52;TLOD=4.07	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:46,2:0.048:0:2:1.00:1534,66:18:28	0/0:26,0:0.00:0:0:.:864,0:10:16
chr1	25686544	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=15.30;TLOD=4.77	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:74,3:0.039:3:0:1.00:2490,90:34:40	0/0:51,0:0.00:0:0:.:1707,0:27:24
chr1	26202630	rs6691747	G	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=21.37	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:3,6:0.667:5:1:0.833:103,210:1:2	0/0:7,0:0.00:0:0:.:236,0:4:3
chr1	26271182	rs11247894	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.61;TLOD=21.14	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:8,7:0.467:4:3:0.571:268,223:2:6	0/0:12,0:0.00:0:0:.:411,0:10:2
chr1	26282320	.	TCCAGGACAGGGACTGGGGCCGGGACCGGGACCGGGACTGGGGCCGGGACCGGGACCGGGACTGGGGCCGGGACCGGGA	T	.	alt_allele_in_normal;clustered_events	ECNT=4;HCNT=1;MAX_ED=24;MIN_ED=3;NLOD=17.78;TLOD=24.43	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:137,13:0.135:9:4:.:4076,341:74:63	0/0:97,3:0.050:1:2:.:2912,77:45:52
chr1	26282323	rs6672357	A	G	.	alt_allele_in_normal;clustered_events;germline_risk	DB;ECNT=4;HCNT=1;MAX_ED=24;MIN_ED=3;NLOD=0.933;TLOD=31.32	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:32,12:0.209:6:6:0.500:0|1:26282323_A_G:1042,347:21:11	0/0:31,2:0.061:1:1:0.500:0|1:26282323_A_G:1000,57:13:18
chr1	26282334	.	TGGGGCCG	T	.	alt_allele_in_normal;clustered_events;germline_risk	ECNT=4;HCNT=1;MAX_ED=24;MIN_ED=3;NLOD=1.23;TLOD=40.63	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:33,15:0.267:8:7:.:0|1:26282323_A_G:1129,488:22:11	0/0:34,2:0.059:1:1:.:0|1:26282323_A_G:1159,65:14:20
chr1	26282344	.	ACCGGGACCGGGACTGGG	A	.	alt_allele_in_normal;clustered_events	ECNT=4;HCNT=1;MAX_ED=24;MIN_ED=3;NLOD=3.34;TLOD=46.27	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:36,16:0.280:10:6:.:0|1:26282323_A_G:1223,511:24:12	0/0:41,2:0.049:1:1:.:0|1:26282323_A_G:1384,67:21:20
chr1	26300792	rs4291487	A	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.91;TLOD=9.99	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:8,4:0.333:1:3:0.750:255,114:5:3	0/0:13,0:0.00:0:0:.:412,0:9:4
chr1	26322060	rs11247913	G	C	.	alt_allele_in_normal	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.69;TLOD=152.92	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:57,50:0.462:28:22:0.560:1899,1651:32:25	0/0:43,2:0.044:1:1:0.500:1466,69:22:21
chr1	26337728	rs4072445	T	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.46;TLOD=28.59	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:11,10:0.474:6:4:0.600:353,336:5:6	0/0:5,0:0.00:0:0:.:128,0:3:2
chr1	26546063	rs12723936	A	G	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.55;TLOD=46.43	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:11,18:0.560:13:5:0.278:347,612:4:7	0/0:25,2:0.080:1:1:0.500:770,39:17:8
chr1	26773690	.	CGCA	C	.	alt_allele_in_normal;str_contraction	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=12.43;RPA=8,7;RU=GCA;STR;TLOD=8.00	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:131,4:0.030:3:1:.:4051,135:63:68	0/0:82,3:0.036:3:0:.:2563,99:33:49
chr1	26775108	.	T	C	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=25.83;TLOD=4.65	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:190,3:0.017:2:1:0.667:5924,98:95:95	0/0:92,0:0.00:0:0:.:2915,0:42:50
chr1	26779184	.	GGAA	G	.	str_contraction	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=14.99;RPA=5,4;RU=GAA;STR;TLOD=7.84	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:90,3:0.034:2:1:.:3035,90:49:41	0/0:50,0:0.00:0:0:.:1697,0:21:29
chr1	27363868	rs4307592	T	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=16.70	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,5:0.556:1:4:0.200:129,170:2:2	0/0:5,0:0.00:0:0:.:154,0:3:2
chr1	27390193	.	A	G	.	germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=7.85	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:0,2:1.00:2:0:0.00:0,69:0:0	0/0:4,0:0.00:0:0:.:136,0:1:3
chr1	27414637	.	T	C	.	germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=10.55	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,3:0.750:1:2:0.333:33,101:1:0	0/0:5,0:0.00:0:0:.:160,0:1:4
chr1	29148706	.	CCTT	C	.	alt_allele_in_normal;str_contraction	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=20.63;RPA=5,4;RU=CTT;STR;TLOD=6.70	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:145,3:0.022:2:1:.:4846,102:98:47	0/0:99,2:0.020:1:1:.:3425,71:56:43
chr1	29306979	.	T	TCAGCC	.	germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.51;RPA=2,3;RU=CAGCC;STR;TLOD=12.04	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,3:0.600:3:0:.:68,100:1:1	0/0:5,0:0.00:0:0:.:165,0:4:1
chr1	29323362	rs10915252	T	C	.	PASS	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.31;TLOD=22.40	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:12,7:0.389:5:2:0.714:395,243:7:5	0/0:12,0:0.00:0:0:.:388,0:8:4
chr1	30945272	rs12142833	C	T	.	t_lod_fstar	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.72;TLOD=4.66	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:25,2:0.074:1:1:0.500:833,68:13:12	0/0:19,0:0.00:0:0:.:644,0:8:11
chr1	30968074	rs4317854	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=14.97	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:5,5:0.500:3:2:0.600:175,156:1:4	0/0:4,0:0.00:0:0:.:148,0:2:2
chr1	32159649	rs41308244	G	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.71;TLOD=21.41	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:9,8:0.471:5:3:0.625:304,227:7:2	0/0:9,0:0.00:0:0:.:306,0:4:5
chr1	32204645	.	ATG	A	.	str_contraction	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=38.46;RPA=5,4;RU=TG;STR;TLOD=6.55	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:257,5:0.017:5:0:.:8241,164:137:120	0/0:137,0:0.00:0:0:.:4456,0:76:61
chr1	32223920	rs16834931	A	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=18.97	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,5:0.714:1:4:0.800:53,184:1:1	0/0:4,0:0.00:0:0:.:126,0:1:3
chr1	32224256	rs589034	A	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.41;TLOD=8.88	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:7,3:0.300:0:3:1.00:217,101:5:2	0/0:8,0:0.00:0:0:.:245,0:4:4
chr1	32895686	rs10914632	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=16.60	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:5,5:0.556:2:3:0.400:168,169:2:3	0/0:6,0:0.00:0:0:.:200,0:5:1
chr1	33312625	rs12563102	G	A	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=97.96	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:29,32:0.525:19:13:0.594:1008,1039:16:13	0/0:40,3:0.071:1:2:0.333:1348,91:24:16
chr1	34904679	.	CTGG	C	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=19.16;RPA=4,3;RU=TGG;STR;TLOD=4.58	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:134,2:0.017:0:2:.:4487,71:85:49	0/0:66,0:0.00:0:0:.:2260,0:37:29
chr1	35716259	.	TCC	T	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=10.22;TLOD=5.04	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:74,2:0.028:2:0:.:2298,62:40:34	0/0:35,0:0.00:0:0:.:1114,0:16:19
chr1	37554146	rs2273013	C	T	.	PASS	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.42;TLOD=54.52	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:29,23:0.400:11:12:0.522:861,761:12:17	0/0:22,0:0.00:0:0:.:627,0:13:9
chr1	37699052	rs557290	C	G	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.68;TLOD=50.29	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:16,16:0.500:8:8:0.500:438,523:10:6	0/0:18,1:0.053:1:0:0.00:499,27:8:10
chr1	37703384	.	T	C	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=10.83;TLOD=4.01	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:68,2:0.029:2:0:1.00:2172,70:33:35	0/0:36,0:0.00:0:0:.:1170,0:15:21
chr1	37708513	rs557897	G	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=9.29	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:3,3:0.500:2:1:0.667:105,99:2:1	0/0:6,0:0.00:0:0:.:201,0:4:2
chr1	37720517	rs6671088	C	T	.	alt_allele_in_normal	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=3.95;TLOD=47.02	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:16,17:0.500:9:8:0.471:549,550:9:7	0/0:28,2:0.038:2:0:0.00:940,68:14:14
chr1	37776957	rs568419	T	C	.	germline_risk;t_lod_fstar	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=5.60	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:6,2:0.333:0:2:0.00:195,63:0:6	0/0:4,0:0.00:0:0:.:131,0:1:3
chr1	37866406	.	T	TCTCACACACACACA	.	germline_risk;triallelic_site	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.613;TLOD=16.60	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:6,5:0.267:0:0:.:131,0:2:2	0/0:2,0:0.00:0:0:.:68,0:0:2
chr1	37878153	.	C	T	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=10.23;TLOD=4.04	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:61,2:0.033:2:0:0.00:2018,69:25:36	0/0:38,0:0.00:0:0:.:1304,0:25:13
chr1	38708954	.	ATGC	A	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=12.29;RPA=5,4;RU=TGC;STR;TLOD=5.36	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:58,2:0.040:1:1:.:1812,64:17:41	0/0:49,1:0.00:0:1:.:1540,32:22:27
chr1	38845945	rs80212478	T	G	.	PASS	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.92;TLOD=54.92	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:14,22:0.606:12:10:0.545:470,615:7:7	0/0:24,0:0.00:0:0:.:791,0:12:12
chr1	39300466	.	TA	T	.	germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;RPA=4,3;RU=A;STR;TLOD=6.42	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:0,2:1.00:0:2:.:0,60:0:0	0/0:5,0:0.00:0:0:.:156,0:0:5
chr1	39333399	.	C	T	.	alt_allele_in_normal;germline_risk	ECNT=1;HCNT=8;MAX_ED=.;MIN_ED=.;NLOD=2.15;TLOD=10.44	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:76,11:0.093:4:7:0.636:2686,97:32:44	0/0:56,5:0.085:4:1:0.200:1821,39:26:30
chr1	39359046	rs2256614	C	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.71;TLOD=15.50	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:15,5:0.250:5:0:0.00:516,180:11:4	0/0:9,0:0.00:0:0:.:313,0:6:3
chr1	39429167	rs645061	A	G	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.838;TLOD=35.00	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:14,11:0.440:8:3:0.273:448,372:10:4	0/0:15,1:0.063:0:1:1.00:489,35:11:4
chr1	39453674	rs688320	T	G	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.68;TLOD=109.80	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:43,33:0.446:25:8:0.758:1432,1165:24:19	0/0:38,2:0.050:1:1:0.500:1281,74:20:18
chr1	39463395	.	TAGG	T	.	germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=8.17	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,2:0.667:0:2:.:30,59:0:1	0/0:6,0:0.00:0:0:.:149,0:2:4
chr1	39515790	.	G	T	.	PASS	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=15.07;TLOD=15.32	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:53,7:0.119:2:5:0.286:1649,223:24:29	0/0:62,1:0.016:1:0:1.00:1892,29:31:31
chr1	39741497	rs497333	T	G	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.64;TLOD=67.27	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:15,20:0.571:15:5:0.750:494,685:9:6	0/0:17,1:0.056:0:1:0.00:580,33:9:8
chr1	39770456	.	T	C	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=20.76;TLOD=5.22	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:149,5:0.034:4:1:0.800:4735,164:85:64	0/0:72,0:0.00:0:0:.:2305,0:42:30
chr1	40248035	.	GTC	G	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=32.45;RPA=6,5;RU=TC;STR;TLOD=4.52	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:205,3:0.015:0:3:.:7158,103:116:89	0/0:114,0:0.00:0:0:.:3988,0:57:57
chr1	40309786	.	TAC	T	.	alt_allele_in_normal;str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.38;RPA=7,6;RU=AC;STR;TLOD=5.72	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:34,3:0.081:2:1:.:1118,100:8:26	0/0:22,1:0.043:0:1:.:710,29:7:15
chr1	40333151	.	T	C	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.538;TLOD=23.93	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:14,10:0.400:4:6:0.400:463,329:9:5	0/0:16,1:0.067:1:0:1.00:537,35:10:6
chr1	40457347	rs2272994	G	A	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.58;TLOD=89.41	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:26,31:0.537:17:14:0.548:907,977:11:15	0/0:34,2:0.063:0:2:0.00:1215,61:17:17
chr1	40541731	rs41268073	T	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.01;TLOD=43.42	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:8,13:0.619:5:8:0.385:254,436:2:6	0/0:11,0:0.00:0:0:.:358,0:4:7
chr1	40988753	rs6675122	G	A	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.46;TLOD=118.62	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:34,40:0.552:18:22:0.450:1126,1326:16:18	0/0:34,2:0.063:1:1:0.500:1126,64:14:20
chr1	41303662	rs12032215	A	G	.	clustered_events;germline_risk	DB;ECNT=2;HCNT=1;MAX_ED=3;MIN_ED=3;NLOD=0.903;TLOD=21.33	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:1,5:0.833:2:3:0.600:0|1:41303662_A_G:32,172:0:1	0/0:5,0:0.00:0:0:.:0|1:41303662_A_G:163,0:2:3
chr1	41303665	rs12035353	G	A	.	clustered_events;germline_risk	DB;ECNT=2;HCNT=1;MAX_ED=3;MIN_ED=3;NLOD=1.20;TLOD=21.33	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:1,5:0.833:2:3:0.400:0|1:41303662_A_G:28,162:0:1	0/0:4,0:0.00:0:0:.:0|1:41303662_A_G:128,0:1:3
chr1	41482633	.	AAG	A	.	str_contraction	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.19;RPA=6,5;RU=AG;STR;TLOD=6.73	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:20,3:0.136:3:0:.:670,102:11:9	0/0:14,0:0.00:0:0:.:473,0:7:7
chr1	41510546	rs72669005	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=18.84	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,7:0.600:6:1:0.857:130,222:4:0	0/0:5,0:0.00:0:0:.:174,0:5:0
chr1	42181865	.	TCACA	T	.	t_lod_fstar	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=2.66;RPA=14,12;RU=CA;STR;TLOD=5.43	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:7,6:0.300:2:4:.:98,198:0:3	0/0:9,0:0.00:0:0:.:33,0:0:1
chr1	42536528	.	AAG	A	.	alt_allele_in_normal;str_contraction	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.53;RPA=8,7;RU=AG;STR;TLOD=6.94	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:92,6:0.053:2:4:.:3102,205:55:37	0/0:40,2:0.051:0:2:.:1336,70:19:21
chr1	43422931	rs2782645	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=9.32	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:3,3:0.500:1:2:0.333:107,97:2:1	0/0:6,0:0.00:0:0:.:209,0:4:2
chr1	43426518	rs2782646	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.36;TLOD=33.18	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:12,11:0.500:8:3:0.727:389,347:6:6	0/0:9,0:0.00:0:0:.:277,0:5:4
chr1	43569422	rs2842186	A	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=17.76	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,5:0.714:4:1:0.200:65,172:1:1	0/0:5,0:0.00:0:0:.:150,0:1:4
chr1	43970434	.	C	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=9.63;TLOD=4.03	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:37,2:0.051:0:2:1.00:1136,65:18:19	0/0:32,0:0.00:0:0:.:990,0:15:17
chr1	44339147	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=14;MAX_ED=.;MIN_ED=.;NLOD=61.64;TLOD=4.08	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:314,4:0.010:1:3:0.250:9677,128:141:173	0/0:216,0:0.00:0:0:.:6791,0:110:106
chr1	44758229	.	TATTAGCTG	T	.	str_contraction	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.96;RPA=2,1;RU=ATTAGCTG;STR;TLOD=31.95	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:18,9:0.333:5:4:.:570,271:10:8	0/0:10,0:0.00:0:0:.:319,0:4:6
chr1	45070332	rs346702	A	G	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.37;TLOD=86.02	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:37,29:0.438:12:17:0.586:1143,947:15:22	0/0:28,2:0.071:0:2:1.00:886,61:13:15
chr1	45499635	.	G	A	.	germline_risk	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.16;TLOD=21.25	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:8,8:0.500:3:5:0.375:260,224:3:5	0/0:4,0:0.00:0:0:.:118,0:4:0
chr1	46061806	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=8.73;TLOD=4.46	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:40,2:0.048:2:0:1.00:1410,70:23:17	0/0:29,0:0.00:0:0:.:1016,0:19:10
chr1	46260269	rs2295464	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=19.71	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,6:0.600:5:1:0.833:116,197:1:3	0/0:5,0:0.00:0:0:.:168,0:1:4
chr1	46279536	.	C	T	.	t_lod_fstar	ECNT=1;HCNT=6;MAX_ED=.;MIN_ED=.;NLOD=34.01;TLOD=4.09	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:243,3:0.014:0:3:1.00:8130,95:115:128	0/0:121,0:0.00:0:0:.:4150,0:64:57
chr1	46859640	.	AGTT	A	.	clustered_events;multi_event_alt_allele_in_normal;str_contraction;t_lod_fstar	ECNT=2;HCNT=12;MAX_ED=42;MIN_ED=42;NLOD=9.72;RPA=2,1;RU=GTT;STR;TLOD=5.21	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:63,2:0.033:1:1:.:1900,65:25:38	0/0:36,1:0.029:1:0:.:1108,2:18:18
chr1	46859682	.	G	A	.	clustered_events	ECNT=2;HCNT=20;MAX_ED=42;MIN_ED=42;NLOD=17.76;TLOD=18.14	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:110,13:0.076:6:7:0.462:3748,436:58:52	0/0:65,0:0.00:0:0:.:2277,0:37:28
chr1	47115450	rs7547893	A	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.38;TLOD=22.83	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:5,8:0.615:3:5:0.625:157,263:4:1	0/0:8,0:0.00:0:0:.:249,0:4:4
chr1	47116570	.	ATTTCGT	A	.	clustered_events	ECNT=2;HCNT=2;MAX_ED=50;MIN_ED=50;NLOD=3.00;TLOD=11.20	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:5,3:0.375:1:2:.:149,95:2:3	0/0:10,0:0.00:0:0:.:301,0:6:4
chr1	47116620	rs10890465	T	G	.	clustered_events;germline_risk	DB;ECNT=2;HCNT=2;MAX_ED=50;MIN_ED=50;NLOD=3.61;TLOD=21.61	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:20,8:0.320:4:4:0.500:637,261:8:12	0/0:13,0:0.00:0:0:.:408,0:9:4
chr1	47141969	rs11211465	C	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=7.78	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:10,3:0.231:2:1:0.333:326,94:5:5	0/0:6,0:0.00:0:0:.:198,0:4:2
chr1	47143996	rs911909	T	C	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.23;TLOD=91.27	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:27,28:0.509:15:13:0.536:854,946:7:20	0/0:32,2:0.059:0:2:0.00:1021,70:15:17
chr1	47144918	.	A	C	.	alt_allele_in_normal	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.41;TLOD=36.81	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:47,13:0.228:6:7:0.538:1532,439:27:20	0/0:47,3:0.064:2:1:0.333:1553,103:18:29
chr1	47224170	rs34087210	C	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.37;TLOD=56.20	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:18,18:0.500:9:9:0.500:612,585:14:4	0/0:18,0:0.00:0:0:.:590,0:9:9
chr1	50399782	.	AT	A	.	alt_allele_in_normal	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.43;RPA=7,6;RU=T;STR;TLOD=36.03	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:24,20:0.462:10:10:.:775,648:19:5	0/0:27,1:0.037:1:0:.:866,33:18:9
chr1	50959621	.	CCA	C	.	alt_allele_in_normal;str_contraction	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.43;RPA=8,7;RU=CA;STR;TLOD=6.71	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:42,4:0.087:3:1:.:1385,138:21:21	0/0:21,1:0.045:1:0:.:696,33:6:15
chr1	52381636	.	A	G	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.12;TLOD=4.50	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:37,2:0.056:1:1:0.500:1186,69:19:18	0/0:17,0:0.00:0:0:.:544,0:11:6
chr1	52481761	.	CTA	C	.	str_contraction	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=8.41;RPA=6,5;RU=TA;STR;TLOD=6.31	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:44,4:0.071:3:1:.:1510,141:26:18	0/0:32,0:0.00:0:0:.:1103,0:17:15
chr1	52796479	rs56078509	C	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=18.36	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:8,7:0.467:4:3:0.429:280,192:5:3	0/0:4,0:0.00:0:0:.:147,0:2:2
chr1	52814020	.	GTTAT	G	.	germline_risk;str_contraction	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.19;RPA=4,3;RU=TTAT;STR;TLOD=7.06	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:6,2:0.250:0:2:.:199,70:2:4	0/0:4,0:0.00:0:0:.:137,0:2:2
chr1	53069806	rs1288386	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=25.46	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:8,8:0.571:4:4:0.500:247,258:3:5	0/0:5,0:0.00:0:0:.:161,0:2:3
chr1	53210776	rs1799821	G	A	.	alt_allele_in_normal	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=2.78;TLOD=110.80	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:24,36:0.618:21:15:0.583:746,1170:11:13	0/0:34,2:0.059:1:1:0.500:1087,65:21:13
chr1	53213557	rs1799822	A	G	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.674;TLOD=85.49	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:26,31:0.540:14:17:0.548:837,994:16:10	0/0:28,2:0.069:1:1:0.500:915,71:12:16
chr1	53464677	.	TGCC	T	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=8.89;RPA=6,5;RU=GCC;STR;TLOD=5.25	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:57,2:0.035:1:1:.:1387,63:25:32	0/0:30,0:0.00:0:0:.:666,0:10:20
chr1	53466391	rs1288636	C	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=9.13	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:5,3:0.375:2:1:0.333:156,100:2:3	0/0:7,0:0.00:0:0:.:229,0:4:3
chr1	54008799	rs6672989	T	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=12.92	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:5,4:0.444:2:2:0.500:164,137:3:2	0/0:5,0:0.00:0:0:.:162,0:2:3
chr1	54190978	rs4927066	C	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=21.91	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,6:0.750:3:3:0.500:73,210:1:1	0/0:4,0:0.00:0:0:.:147,0:2:2
chr1	54614939	.	GGTGT	G	.	alt_allele_in_normal;germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.68;RPA=7,5;RU=GT;STR;TLOD=37.09	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,9:0.667:6:3:.:0,301:0:0	0/0:8,1:0.091:1:0:.:69,34:1:1
chr1	54980991	rs2253467	G	C	.	clustered_events;germline_risk;homologous_mapping_event	DB;ECNT=3;HCNT=2;MAX_ED=33;MIN_ED=7;NLOD=0.903;TLOD=12.04	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:2,3:0.600:1:2:0.333:0|1:54980991_G_C:70,101:0:2	0/0:3,0:0.00:0:0:.:0|1:54980991_G_C:103,0:1:2
chr1	54980998	rs2253466	C	T	.	clustered_events;germline_risk;homologous_mapping_event	DB;ECNT=3;HCNT=2;MAX_ED=33;MIN_ED=7;NLOD=1.20;TLOD=14.95	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:2,4:0.667:1:3:0.750:0|1:54980991_G_C:72,127:0:2	0/0:4,0:0.00:0:0:.:0|1:54980991_G_C:140,0:2:2
chr1	54981024	rs2253465	G	A	.	clustered_events;germline_risk;homologous_mapping_event	DB;ECNT=3;HCNT=2;MAX_ED=33;MIN_ED=7;NLOD=1.20;TLOD=22.37	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:3,8:0.778:1:7:0.125:97,243:0:3	0/0:4,0:0.00:0:0:.:121,0:2:2
chr1	56737199	rs6656021	A	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.01;TLOD=21.70	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:6,7:0.583:4:3:0.429:206,219:2:4	0/0:10,0:0.00:0:0:.:331,0:9:1
chr1	56755705	.	C	T	.	germline_risk;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.06;TLOD=4.05	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:12,2:0.143:0:2:1.00:380,56:7:5	0/0:7,0:0.00:0:0:.:206,0:4:3
chr1	59893484	rs4388726	G	A	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.999;TLOD=73.31	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:29,24:0.453:8:16:0.333:805,779:17:12	0/0:38,3:0.073:1:2:0.333:1038,99:18:20
chr1	61406630	.	G	A	.	PASS	ECNT=1;HCNT=3;MAX_ED=.;MIN_ED=.;NLOD=5.67;TLOD=7.21	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:59,4:0.070:2:2:0.500:1765,116:29:30	0/0:23,0:0.00:0:0:.:706,0:8:15
chr1	61914523	rs2482858	A	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.12;TLOD=31.73	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:11,10:0.476:6:4:0.400:373,339:6:5	0/0:17,0:0.00:0:0:.:571,0:7:10
chr1	61914626	rs1056513	G	A	.	alt_allele_in_normal	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=2.68;TLOD=83.85	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:43,34:0.422:19:15:0.559:1345,1135:22:21	0/0:41,2:0.057:1:1:0.500:1311,69:20:21
chr1	61990342	rs1134767	G	A	.	alt_allele_in_normal;clustered_events	DB;ECNT=2;HCNT=2;MAX_ED=34;MIN_ED=34;NLOD=3.89;TLOD=94.59	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:35,34:0.500:18:16:0.529:1133,1081:14:21	0/0:25,1:0.040:0:1:0.00:828,32:17:8
chr1	61990376	rs12730210	G	A	.	alt_allele_in_normal;clustered_events;germline_risk	DB;ECNT=2;HCNT=2;MAX_ED=34;MIN_ED=34;NLOD=1.54;TLOD=65.21	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:24,23:0.488:11:12:0.478:825,746:9:15	0/0:18,1:0.056:1:0:1.00:623,34:12:6
chr1	62037941	.	C	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=12.34;TLOD=4.70	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:48,1:0.038:0:1:1.00:1636,35:22:26	0/0:42,0:0.00:0:0:.:1445,0:25:17
chr1	62128221	rs2481664	T	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=18.24	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:6,7:0.538:4:3:0.571:197,188:4:2	0/0:5,0:0.00:0:0:.:163,0:0:5
chr1	62210612	rs2886644	C	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=11.68	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:9,5:0.357:3:2:0.400:331,144:4:5	0/0:6,0:0.00:0:0:.:212,0:2:4
chr1	64641940	.	T	C	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=8.73;TLOD=5.62	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:75,3:0.045:1:2:0.333:2366,95:31:44	0/0:31,0:0.00:0:0:.:953,0:12:19
chr1	66739644	rs473470	C	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=14.60	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,5:0.556:2:3:0.600:143,149:3:1	0/0:7,0:0.00:0:0:.:246,0:3:4
chr1	66893512	rs3008881	T	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=32.07	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,9:0.900:6:3:0.667:32,292:1:0	0/0:4,0:0.00:0:0:.:125,0:2:2
chr1	68162838	rs76813845	A	G	.	clustered_events;germline_risk	DB;ECNT=2;HCNT=2;MAX_ED=19;MIN_ED=19;NLOD=4.82;TLOD=46.00	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:13,15:0.560:9:6:0.400:422,505:7:6	0/0:18,0:0.00:0:0:.:588,0:15:3
chr1	68162857	rs2820489	T	C	.	alt_allele_in_normal;clustered_events;germline_risk	DB;ECNT=2;HCNT=2;MAX_ED=19;MIN_ED=19;NLOD=0.938;TLOD=52.21	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:17,17:0.516:8:9:0.471:521,575:8:9	0/0:17,1:0.063:1:0:1.00:524,34:12:5
chr1	68282440	rs7516564	A	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=17.20	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,5:0.556:4:1:0.200:126,175:2:2	0/0:4,0:0.00:0:0:.:132,0:1:3
chr1	68439675	rs1925955	G	C	.	alt_allele_in_normal	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=5.71;TLOD=58.16	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:18,19:0.514:15:4:0.789:636,622:9:9	0/0:32,1:0.030:0:1:0.00:1064,37:15:17
chr1	68451602	rs3125909	C	A	.	germline_risk;t_lod_fstar	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=6.22	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,2:0.333:2:0:0.00:107,69:3:1	0/0:7,0:0.00:0:0:.:243,0:2:5
chr1	68486881	.	AACAC	A	.	alt_allele_in_normal;germline_risk;triallelic_site	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.752;RPA=20,18;RU=AC;STR;TLOD=7.18	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:11,12:0.289:2:7:.:222,274:4:3	0/0:8,3:0.094:1:0:.:214,32:3:4
chr1	69760442	rs12407496	T	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=34.56	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:8,10:0.556:4:6:0.400:268,355:3:5	0/0:7,0:0.00:0:0:.:238,0:4:3
chr1	74198130	rs1412825	C	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.31;TLOD=21.54	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,6:0.600:3:3:0.500:134,216:1:3	0/0:11,0:0.00:0:0:.:372,0:6:5
chr1	74198465	rs4422957	T	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=19.94	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:6,6:0.500:3:3:0.500:191,207:1:5	0/0:5,0:0.00:0:0:.:158,0:3:2
chr1	74369122	.	AAAAT	A	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.47;RPA=4,3;RU=AAAT;STR;TLOD=4.43	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:30,2:0.063:2:0:.:973,67:13:17	0/0:16,0:0.00:0:0:.:527,0:10:6
chr1	74764057	.	AATG	A	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=10.19;RPA=5,4;RU=ATG;STR;TLOD=4.87	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:103,2:0.023:2:0:.:3469,67:54:49	0/0:38,0:0.00:0:0:.:1276,0:18:20
chr1	75206449	rs12135977	T	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=13.33	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:3,4:0.571:2:2:0.500:97,135:2:1	0/0:4,0:0.00:0:0:.:131,0:2:2
chr1	75883849	rs5745485	C	G	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.15;TLOD=103.15	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:29,30:0.517:16:14:0.467:1008,1063:24:5	0/0:22,1:0.045:1:0:0.00:801,30:12:10
chr1	76699956	.	A	G	.	t_lod_fstar	ECNT=1;HCNT=10;MAX_ED=.;MIN_ED=.;NLOD=12.64;TLOD=4.22	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:44,2:0.045:1:1:0.500:1378,68:23:21	0/0:49,0:0.00:0:0:.:1500,0:28:21
chr1	77297386	rs1167207	A	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.41;TLOD=11.33	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:3,4:0.571:1:3:0.750:98,115:1:2	0/0:8,0:0.00:0:0:.:252,0:4:4
chr1	78536282	.	A	AC	.	germline_risk	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=12.89	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:3,4:0.571:1:3:.:89,122:1:2	0/0:7,0:0.00:0:0:.:211,0:4:3
chr1	78917773	rs12569007	A	T	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.37;TLOD=75.98	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:30,25:0.455:17:8:0.320:996,806:16:14	0/0:28,2:0.067:1:1:0.500:929,67:14:14
chr1	78937650	rs1352555	T	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=10.85	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,3:0.750:2:1:0.667:32,104:0:1	0/0:4,0:0.00:0:0:.:133,0:3:1
chr1	81950092	.	TTG	T	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=10.29;RPA=7,6;RU=TG;STR;TLOD=4.49	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:67,3:0.043:1:2:.:2201,94:41:26	0/0:45,1:0.022:1:0:.:1482,34:20:25
chr1	83933881	rs56159052	T	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.01;TLOD=8.18	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:7,3:0.300:2:1:0.667:222,94:3:4	0/0:10,0:0.00:0:0:.:311,0:6:4
chr1	83947042	rs12121629	G	C	.	germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=18.71	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:8,6:0.429:3:3:0.500:223,200:4:4	0/0:4,0:0.00:0:0:.:110,0:2:2
chr1	85108338	rs709759	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=12.62	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:5,4:0.444:3:1:0.750:162,134:1:4	0/0:6,0:0.00:0:0:.:204,0:4:2
chr1	85268054	.	TGTTAA	T	.	alt_allele_in_normal;germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.603;TLOD=30.64	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:10,8:0.444:6:2:.:325,252:7:3	0/0:16,1:0.059:0:1:.:513,30:9:7
chr1	86342066	.	T	TA	.	germline_risk;triallelic_site	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.11;RPA=3,4;RU=A;STR;TLOD=7.12	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:3,8:0.615:0:0:.:64,0:1:1	0/0:7,0:0.00:0:0:.:219,0:7:0
chr1	86356291	rs1182099	T	A	.	germline_risk;t_lod_fstar	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=5.80	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,2:0.333:2:0:1.00:133,65:1:3	0/0:4,0:0.00:0:0:.:132,0:3:1
chr1	86560068	.	A	G	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=9.33;TLOD=4.73	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:40,3:0.051:1:2:0.667:1328,108:20:20	0/0:33,0:0.00:0:0:.:1089,0:23:10
chr1	88982856	.	C	G	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=7;HCNT=2;MAX_ED=84;MIN_ED=17;NLOD=44.53;TLOD=6.02	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:370,3:8.646e-03:3:0:0.00:0|1:88982856_C_G:11533,110:205:165	0/0:189,2:0.011:1:1:0.500:0|1:88982856_C_G:5882,70:98:91
chr1	88982873	.	A	G	.	alt_allele_in_normal;clustered_events	ECNT=7;HCNT=2;MAX_ED=84;MIN_ED=17;NLOD=40.72;TLOD=16.60	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:366,7:0.020:4:3:0.429:0|1:88982856_C_G:11755,190:199:167	0/0:198,3:0.021:1:2:0.667:0|1:88982856_C_G:6362,86:96:102
chr1	88982888	.	A	G	.	alt_allele_in_normal;clustered_events	ECNT=7;HCNT=2;MAX_ED=84;MIN_ED=17;NLOD=39.95;TLOD=16.75	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:340,7:0.021:4:3:0.429:0|1:88982856_C_G:10767,253:192:148	0/0:201,5:0.025:1:4:0.800:0|1:88982856_C_G:6375,174:94:107
chr1	88982921	.	T	TGG	.	alt_allele_in_normal;clustered_events	ECNT=7;HCNT=3;MAX_ED=84;MIN_ED=17;NLOD=30.51;RPA=2,4;RU=G;STR;TLOD=23.03	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:284,9:0.031:4:5:.:0|1:88982921_T_TGG:9120,294:153:131	0/0:187,6:0.031:1:5:.:0|1:88982921_T_TGG:6017,198:91:96
chr1	88982925	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=7;HCNT=3;MAX_ED=84;MIN_ED=17;NLOD=29.60;TLOD=28.82	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:301,10:0.035:5:5:0.500:0|1:88982921_T_TGG:9172,331:163:138	0/0:192,6:0.034:1:5:0.167:0|1:88982921_T_TGG:5913,200:90:102
chr1	88982936	.	T	C	.	alt_allele_in_normal;clustered_events	ECNT=7;HCNT=3;MAX_ED=84;MIN_ED=17;NLOD=29.00;TLOD=32.12	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:272,11:0.040:6:5:0.545:0|1:88982921_T_TGG:8351,377:147:125	0/0:181,7:0.035:1:6:0.143:0|1:88982921_T_TGG:5589,242:86:95
chr1	88982940	.	A	G	.	alt_allele_in_normal;clustered_events	ECNT=7;HCNT=3;MAX_ED=84;MIN_ED=17;NLOD=22.42;TLOD=30.87	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:285,11:0.041:6:5:0.455:0|1:88982921_T_TGG:9387,387:152:133	0/0:177,6:0.042:1:5:0.833:0|1:88982921_T_TGG:5812,217:84:93
chr1	88983034	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=5;HCNT=27;MAX_ED=124;MIN_ED=12;NLOD=21.88;TLOD=13.03	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:214,8:0.038:5:3:0.375:0|1:88983034_C_T:7561,234:121:93	0/0:129,4:0.031:3:1:0.250:0|1:88983034_C_T:4558,124:68:61
chr1	88983046	.	C	T	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=5;HCNT=27;MAX_ED=124;MIN_ED=12;NLOD=25.31;TLOD=4.17	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:195,2:0.010:1:1:0.500:0|1:88983034_C_T:6787,63:104:91	0/0:116,2:0.018:2:0:0.00:0|1:88983034_C_T:4066,58:59:57
chr1	88983129	.	T	G	.	alt_allele_in_normal;clustered_events	ECNT=5;HCNT=30;MAX_ED=124;MIN_ED=12;NLOD=13.58;TLOD=13.75	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:102,5:0.047:4:1:0.800:0|1:88983129_T_G:3301,174:64:38	0/0:73,2:0.027:2:0:1.00:0|1:88983129_T_G:2395,71:29:44
chr1	88983134	.	T	A	.	alt_allele_in_normal;clustered_events	ECNT=5;HCNT=30;MAX_ED=124;MIN_ED=12;NLOD=13.27;TLOD=15.57	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:101,5:0.055:4:1:0.800:0|1:88983129_T_G:3337,165:64:37	0/0:70,2:0.027:2:0:1.00:0|1:88983129_T_G:2314,70:25:45
chr1	88983158	.	T	C	.	alt_allele_in_normal;clustered_events	ECNT=5;HCNT=30;MAX_ED=124;MIN_ED=12;NLOD=11.20;TLOD=20.13	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:114,10:0.074:6:4:0.600:0|1:88983129_T_G:3773,341:70:44	0/0:76,3:0.038:2:1:0.667:0|1:88983129_T_G:2508,106:32:44
chr1	88983230	.	G	C	.	alt_allele_in_normal;clustered_events	ECNT=9;HCNT=13;MAX_ED=124;MIN_ED=1;NLOD=13.31;TLOD=31.39	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:185,11:0.059:7:4:0.636:0|1:88983230_G_C:6351,365:105:80	0/0:102,4:0.038:3:1:0.750:0|1:88983230_G_C:3534,138:51:51
chr1	88983231	.	A	G	.	alt_allele_in_normal;clustered_events	ECNT=9;HCNT=13;MAX_ED=124;MIN_ED=1;NLOD=13.61;TLOD=31.28	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:187,11:0.058:7:4:0.364:0|1:88983230_G_C:6097,308:107:80	0/0:103,4:0.038:3:1:0.250:0|1:88983230_G_C:3380,114:52:51
chr1	88983241	.	T	C	.	alt_allele_in_normal;clustered_events	ECNT=9;HCNT=13;MAX_ED=124;MIN_ED=1;NLOD=15.71;TLOD=24.62	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:207,9:0.046:6:3:0.667:0|1:88983230_G_C:6969,303:120:87	0/0:108,4:0.036:3:1:0.750:0|1:88983230_G_C:3587,131:58:50
chr1	88983257	.	A	G	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=9;HCNT=12;MAX_ED=124;MIN_ED=1;NLOD=25.68;TLOD=5.22	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:232,5:0.024:3:2:0.400:7418,135:128:104	0/0:126,3:0.025:2:1:0.333:4087,84:63:63
chr1	88983318	.	A	G	.	clustered_events;homologous_mapping_event	ECNT=9;HCNT=12;MAX_ED=124;MIN_ED=1;NLOD=35.22;TLOD=12.10	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:237,5:0.022:3:2:0.400:0|1:88983318_A_G:7661,170:117:120	0/0:116,0:0.00:0:0:.:0|1:88983318_A_G:3715,0:63:53
chr1	88983320	.	T	C	.	clustered_events;homologous_mapping_event	ECNT=9;HCNT=12;MAX_ED=124;MIN_ED=1;NLOD=36.12;TLOD=14.58	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:233,5:0.026:3:2:0.600:0|1:88983318_A_G:7330,174:116:117	0/0:117,0:0.00:0:0:.:0|1:88983318_A_G:3721,0:63:54
chr1	88983328	.	G	C	.	clustered_events;multi_event_alt_allele_in_normal	ECNT=9;HCNT=12;MAX_ED=124;MIN_ED=1;NLOD=31.04;TLOD=14.70	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:223,6:0.027:3:3:0.500:0|1:88983318_A_G:7515,210:110:113	0/0:114,1:8.621e-03:0:1:0.00:0|1:88983318_A_G:3875,34:61:53
chr1	88983346	.	A	G	.	alt_allele_in_normal;clustered_events	ECNT=9;HCNT=13;MAX_ED=124;MIN_ED=1;NLOD=16.62;TLOD=22.49	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:220,7:0.040:4:3:0.429:0|1:88983346_A_G:7153,249:107:113	0/0:116,4:0.035:3:1:0.250:0|1:88983346_A_G:3792,143:60:56
chr1	88983354	.	C	A	.	alt_allele_in_normal;clustered_events	ECNT=9;HCNT=13;MAX_ED=124;MIN_ED=1;NLOD=16.62;TLOD=25.04	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:216,10:0.047:5:5:0.500:0|1:88983346_A_G:7277,309:103:113	0/0:110,4:0.035:3:1:0.250:0|1:88983346_A_G:3759,128:61:49
chr1	88983434	.	A	G	.	alt_allele_in_normal	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=20.64;TLOD=10.00	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:210,7:0.036:3:4:0.571:6749,221:98:112	0/0:98,2:0.021:1:1:0.500:3180,67:61:37
chr1	88983546	.	T	C	.	clustered_events;multi_event_alt_allele_in_normal	ECNT=2;HCNT=2;MAX_ED=8;MIN_ED=8;NLOD=15.67;TLOD=7.70	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:133,1:0.029:0:1:0.00:0|1:88983546_T_C:4182,32:69:64	0/0:67,1:0.015:0:1:0.00:0|1:88983546_T_C:2153,33:34:33
chr1	88983554	.	T	A	.	clustered_events;multi_event_alt_allele_in_normal	ECNT=2;HCNT=2;MAX_ED=8;MIN_ED=8;NLOD=15.97;TLOD=19.54	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:133,10:0.071:5:5:0.500:0|1:88983546_T_C:4338,313:72:61	0/0:70,1:0.015:0:1:0.00:0|1:88983546_T_C:2288,31:35:35
chr1	88983707	.	T	C	.	alt_allele_in_normal;clustered_events	ECNT=3;HCNT=12;MAX_ED=44;MIN_ED=9;NLOD=6.17;TLOD=224.41	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:251,73:0.219:34:39:0.466:0|1:88983707_T_C:8101,2545:139:112	0/0:145,9:0.060:4:5:0.444:0|1:88983707_T_C:4697,313:87:58
chr1	88983716	.	T	C	.	alt_allele_in_normal;clustered_events	ECNT=3;HCNT=12;MAX_ED=44;MIN_ED=9;NLOD=6.74;TLOD=215.39	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:232,66:0.214:28:38:0.424:0|1:88983707_T_C:7087,2288:134:98	0/0:142,8:0.056:3:5:0.375:0|1:88983707_T_C:4330,283:84:58
chr1	88983751	.	T	C	.	alt_allele_in_normal;clustered_events	ECNT=3;HCNT=8;MAX_ED=44;MIN_ED=9;NLOD=31.58;TLOD=116.47	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:229,53:0.100:23:30:0.434:7501,1856:131:98	0/0:140,4:0.011:0:4:0.00:4573,142:77:63
chr1	88983800	.	C	G	.	alt_allele_in_normal	ECNT=1;HCNT=3;MAX_ED=.;MIN_ED=.;NLOD=14.83;TLOD=108.95	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:169,42:0.212:19:23:0.548:5726,1420:83:86	0/0:122,6:0.052:2:4:0.667:4048,208:68:54
chr1	89116791	.	A	T	.	germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=12.50	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:0,5:1.00:1:4:0.800:0,163:0:0	0/0:5,0:0.00:0:0:.:147,0:3:2
chr1	89133354	.	A	G	.	alt_allele_in_normal;clustered_events	ECNT=2;HCNT=2;MAX_ED=33;MIN_ED=33;NLOD=4.11;TLOD=57.30	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:136,23:0.145:12:11:0.478:4322,776:84:52	0/0:75,5:0.066:3:2:0.400:2398,164:48:27
chr1	89133387	.	T	C	.	clustered_events;t_lod_fstar	ECNT=2;HCNT=2;MAX_ED=33;MIN_ED=33;NLOD=18.91;TLOD=6.00	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:123,4:0.033:2:2:0.500:4010,116:82:41	0/0:71,0:0.00:0:0:.:2296,0:46:25
chr1	89994341	rs74548088	A	T	.	germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=5.42;TLOD=50.48	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:18,17:0.486:10:7:0.412:598,529:9:9	0/0:18,0:0.00:0:0:.:596,0:8:10
chr1	91981404	.	T	TTGTA	.	alt_allele_in_normal;clustered_events;germline_risk	ECNT=2;HCNT=2;MAX_ED=43;MIN_ED=43;NLOD=0.571;RPA=6,7;RU=TGTA;STR;TLOD=19.18	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,5:0.556:4:1:.:132,169:2:2	0/0:13,1:0.071:1:0:.:448,35:9:4
chr1	91981447	rs10875104	A	G	.	clustered_events;germline_risk	DB;ECNT=2;HCNT=2;MAX_ED=43;MIN_ED=43;NLOD=3.01;TLOD=14.67	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:11,5:0.313:3:2:0.400:352,166:5:6	0/0:10,0:0.00:0:0:.:314,0:6:4
chr1	93232404	.	GAT	G	.	alt_allele_in_normal;str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.52;RPA=7,6;RU=AT;STR;TLOD=4.41	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:39,3:0.075:2:1:.:1375,105:21:18	0/0:31,1:0.034:1:0:.:1056,30:14:17
chr1	93870029	rs2273167	G	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=13.90	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,4:0.500:2:2:0.500:137,144:2:2	0/0:4,0:0.00:0:0:.:141,0:4:0
chr1	94173846	.	A	G	.	t_lod_fstar	ECNT=1;HCNT=3;MAX_ED=.;MIN_ED=.;NLOD=27.99;TLOD=4.72	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:182,3:0.018:1:2:0.667:6172,98:93:89	0/0:105,0:0.00:0:0:.:3578,0:48:57
chr1	96391181	rs1825021	C	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=16.02	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:5,5:0.500:2:3:0.600:151,166:4:1	0/0:6,0:0.00:0:0:.:212,0:3:3
chr1	97585975	rs72732342	T	A	.	germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.76;TLOD=12.29	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:6,4:0.400:1:3:0.250:198,133:2:4	0/0:6,0:0.00:0:0:.:185,0:4:2
chr1	99877597	rs2291638	A	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.21;TLOD=25.16	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:9,10:0.500:7:3:0.300:295,293:5:4	0/0:14,0:0.00:0:0:.:453,0:7:7
chr1	100270815	.	CTT	C	.	alt_allele_in_normal;germline_risk;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.953;RPA=11,9;RU=T;STR;TLOD=5.64	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:15,4:0.211:4:0:.:469,133:9:6	0/0:19,1:0.050:1:0:.:580,36:10:9
chr1	100275589	.	G	T	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=7.83;TLOD=4.26	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:34,2:0.059:2:0:1.00:1167,66:16:18	0/0:27,0:0.00:0:0:.:966,0:15:12
chr1	100331893	rs614766	A	T	.	germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=4.72;TLOD=28.02	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:15,10:0.409:8:2:0.200:479,340:9:6	0/0:23,1:0.053:0:1:1.00:756,2:16:7
chr1	100724617	rs2392221	C	T	.	alt_allele_in_normal	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.65;TLOD=44.17	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:37,16:0.313:11:5:0.313:1258,541:18:19	0/0:38,1:0.031:0:1:1.00:1309,35:21:17
chr1	101787291	.	A	T	.	germline_risk;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=5.89	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:3,2:0.400:1:1:0.500:94,64:2:1	0/0:6,0:0.00:0:0:.:203,0:3:3
chr1	103573543	.	T	C	.	PASS	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.31;TLOD=17.96	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,5:0.714:2:3:0.400:66,174:1:1	0/0:11,0:0.00:0:0:.:355,0:3:8
chr1	107765105	rs7528153	T	A	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.43;TLOD=57.79	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:18,23:0.543:14:9:0.609:565,721:7:11	0/0:33,2:0.069:1:1:0.500:1037,63:13:20
chr1	108654651	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.91;TLOD=4.84	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:20,2:0.091:1:1:0.500:712,68:10:10	0/0:13,0:0.00:0:0:.:450,0:8:5
chr1	108722704	rs4970743	G	C	.	germline_risk;t_lod_fstar	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=5.72	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,2:0.667:1:1:0.500:34,56:1:0	0/0:7,0:0.00:0:0:.:239,0:2:5
chr1	108852814	rs35665867	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=16.00	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:3,5:0.625:2:3:0.400:100,160:2:1	0/0:7,0:0.00:0:0:.:236,0:3:4
chr1	108940204	rs338479	C	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.41;TLOD=17.84	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,6:0.600:3:3:0.500:138,179:2:2	0/0:8,0:0.00:0:0:.:291,0:3:5
chr1	109189458	rs603285	C	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=8.72	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:3,3:0.500:1:2:0.667:93,91:2:1	0/0:4,0:0.00:0:0:.:114,0:2:2
chr1	109201000	rs3736956	C	T	.	germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=2.71;TLOD=34.35	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:10,11:0.524:7:4:0.364:340,355:3:7	0/0:9,0:0.00:0:0:.:308,0:5:4
chr1	109367391	rs11581665	C	T	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=8;MAX_ED=.;MIN_ED=.;NLOD=2.85;TLOD=183.10	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:70,72:0.508:31:41:0.569:2221,2227:42:28	0/0:69,5:0.074:2:3:0.600:2229,153:36:33
chr1	109668049	rs625456	G	T	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.88;TLOD=80.22	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:38,29:0.431:14:15:0.483:1306,894:24:14	0/0:31,2:0.061:1:1:0.500:1031,61:15:16
chr1	109713505	.	G	A	.	alt_allele_in_normal	ECNT=1;HCNT=8;MAX_ED=.;MIN_ED=.;NLOD=45.54;TLOD=8.13	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:309,7:0.025:1:6:0.143:10532,217:161:148	0/0:191,2:0.012:1:1:0.500:6482,62:100:91
chr1	109758807	.	AC	A	.	germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.80;RPA=4,3;RU=C;STR;TLOD=8.06	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,3:0.500:1:2:.:106,81:3:1	0/0:6,0:0.00:0:0:.:176,0:4:2
chr1	110222913	rs611587	C	G	.	germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=3.61;TLOD=33.73	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:8,12:0.600:4:8:0.667:263,339:3:5	0/0:12,0:0.00:0:0:.:405,0:7:5
chr1	111194776	rs9970286	G	A	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.95;TLOD=56.30	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:20,22:0.526:10:12:0.455:680,640:6:14	0/0:28,1:0.036:0:1:0.00:938,30:21:7
chr1	111235965	.	T	C	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=29.79;TLOD=5.48	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:136,3:0.023:3:0:1.00:4467,104:63:73	0/0:101,0:0.00:0:0:.:3364,0:54:47
chr1	111490858	rs2275798	T	C	.	germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=13.93	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,5:0.556:2:3:0.400:130,143:2:2	0/0:4,0:0.00:0:0:.:129,0:2:2
chr1	112509564	rs3790606	G	C	.	germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=17.27	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,5:0.714:3:2:0.600:64,167:0:2	0/0:5,0:0.00:0:0:.:174,0:3:2
chr1	112520503	rs910697	A	G	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.53;TLOD=53.20	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:23,17:0.421:7:10:0.588:752,601:7:16	0/0:23,1:0.050:1:0:0.00:776,32:9:14
chr1	112693912	rs1110042	A	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.41;TLOD=8.10	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:8,3:0.300:0:3:1.00:234,93:6:2	0/0:8,0:0.00:0:0:.:256,0:2:6
chr1	112699500	rs1106287	T	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=13.62	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:5,4:0.444:1:3:0.250:159,144:3:2	0/0:4,0:0.00:0:0:.:130,0:2:2
chr1	112723004	.	G	T	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.51;TLOD=4.13	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:39,3:0.057:3:0:1.00:1139,98:29:10	0/0:16,0:0.00:0:0:.:482,0:9:7
chr1	114535926	.	T	C	.	PASS	ECNT=2;HCNT=1;MAX_ED=2;MIN_ED=2;NLOD=3.01;TLOD=39.08	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:6,9:0.625:3:6:0.333:0|1:114535926_T_C:203,293:4:2	0/0:9,0:0.00:0:0:.:0|1:114535926_T_C:298,0:5:4
chr1	114535928	.	G	A	.	PASS	ECNT=2;HCNT=1;MAX_ED=2;MIN_ED=2;NLOD=3.01;TLOD=39.08	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:6,10:0.625:3:7:0.300:0|1:114535926_T_C:209,303:4:2	0/0:10,0:0.00:0:0:.:0|1:114535926_T_C:340,0:5:5
chr1	114536064	rs2137365	G	C	.	PASS	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.32;TLOD=51.15	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:20,16:0.457:9:7:0.563:701,540:7:13	0/0:21,0:0.00:0:0:.:736,0:12:9
chr1	116599909	.	G	A	.	alt_allele_in_normal	ECNT=1;HCNT=26;MAX_ED=.;MIN_ED=.;NLOD=2.96;TLOD=44.60	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:43,17:0.288:9:8:0.529:1492,519:28:15	0/0:20,1:0.048:0:1:0.00:714,30:14:6
chr1	116944648	rs56209138	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=18.11	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:9,7:0.429:6:1:0.857:258,226:7:2	0/0:7,0:0.00:0:0:.:228,0:3:4
chr1	116985023	.	GTCT	G	.	alt_allele_in_normal;germline_risk;str_contraction	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.590;RPA=3,2;RU=TCT;STR;TLOD=48.05	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:7,12:0.632:4:8:.:243,405:2:5	0/0:16,1:0.059:1:0:.:563,35:8:8
chr1	119839063	.	G	GT	.	germline_risk	ECNT=2;HCNT=1;MAX_ED=1;MIN_ED=1;NLOD=1.82;TLOD=31.50	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:7,4:0.533:2:2:.:0|1:119839063_G_GT:252,148:2:5	0/0:6,0:0.00:0:0:.:0|1:119839063_G_GT:219,0:2:4
chr1	119839064	.	G	GTGAGTCAC	.	germline_risk	ECNT=2;HCNT=1;MAX_ED=1;MIN_ED=1;NLOD=1.82;TLOD=31.50	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:7,5:0.533:3:2:.:0|1:119839063_G_GT:240,178:2:5	0/0:6,0:0.00:0:0:.:0|1:119839063_G_GT:210,0:2:4
chr1	119839498	rs2226084	C	T	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.94;TLOD=50.60	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:22,18:0.450:5:13:0.722:719,542:15:7	0/0:18,1:0.053:1:0:0.00:629,33:9:9
chr1	120449337	.	A	G	.	alt_allele_in_normal	ECNT=1;HCNT=25;MAX_ED=.;MIN_ED=.;NLOD=20.76;TLOD=7.65	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:326,8:0.026:3:5:0.625:10436,273:124:202	0/0:511,30:0.056:11:19:0.633:16125,1014:214:297
chr1	120489796	.	T	G	.	PASS	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=3.01;TLOD=13.36	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:11,6:0.375:4:2:0.667:348,211:5:6	0/0:10,0:0.00:0:0:.:324,0:6:4
chr1	120557896	.	T	A	.	PASS	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=17.15;TLOD=10.16	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:88,6:0.072:3:3:0.500:2884,190:47:41	0/0:63,1:0.017:1:0:1.00:2054,34:30:33
chr1	125088131	.	T	G	.	t_lod_fstar	ECNT=2;HCNT=3;MAX_ED=1;MIN_ED=1;NLOD=22.88;TLOD=5.62	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:39,2:0.054:1:1:0.500:0|1:125088131_T_G:1268,70:24:15	0/0:105,0:0.00:0:0:.:0|1:125088131_T_G:3442,0:53:52
chr1	125088132	.	G	T	.	t_lod_fstar	ECNT=2;HCNT=3;MAX_ED=1;MIN_ED=1;NLOD=22.88;TLOD=5.62	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:40,2:0.054:1:1:0.500:0|1:125088131_T_G:1379,63:24:16	0/0:105,0:0.00:0:0:.:0|1:125088131_T_G:3722,0:53:52
chr1	143555543	.	C	T	.	alt_allele_in_normal;clustered_events;germline_risk	ECNT=2;HCNT=1;MAX_ED=4;MIN_ED=4;NLOD=1.82;TLOD=6.38	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:13,2:0.125:1:1:0.500:0|1:143555543_C_T:438,67:8:5	0/0:19,1:0.048:0:1:1.00:0|1:143555543_C_T:636,33:15:4
chr1	143555547	.	G	A	.	alt_allele_in_normal;clustered_events;germline_risk	ECNT=2;HCNT=1;MAX_ED=4;MIN_ED=4;NLOD=1.52;TLOD=6.33	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:15,2:0.118:1:1:0.500:0|1:143555543_C_T:506,54:9:6	0/0:19,1:0.050:0:1:0.00:0|1:143555543_C_T:662,33:15:4
chr1	143767920	.	G	A	.	alt_allele_in_normal;t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=17.07;TLOD=4.91	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:63,3:0.048:1:2:0.333:1924,99:30:33	0/0:95,2:0.021:0:2:0.00:2811,66:41:54
chr1	144964993	.	G	A	.	alt_allele_in_normal	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=8.79;TLOD=11.76	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:48,7:0.127:6:1:0.857:1327,225:25:23	0/0:72,3:0.040:3:0:1.00:1933,92:41:31
chr1	145574199	.	G	A	.	clustered_events	ECNT=2;HCNT=8;MAX_ED=4;MIN_ED=4;NLOD=84.28;TLOD=6.78	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:193,3:0.015:2:1:0.667:0|1:145574199_G_A:6053,96:84:109	0/0:318,0:0.00:0:0:.:0|1:145574199_G_A:10194,0:149:169
chr1	145574203	.	T	C	.	clustered_events	ECNT=2;HCNT=8;MAX_ED=4;MIN_ED=4;NLOD=84.88;TLOD=6.83	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:191,3:0.016:2:1:0.667:0|1:145574199_G_A:6199,107:86:105	0/0:306,0:0.00:0:0:.:0|1:145574199_G_A:10090,0:143:163
chr1	145875906	.	G	A	.	germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=7.15	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,2:0.667:0:2:0.00:18,64:0:1	0/0:5,0:0.00:0:0:.:140,0:2:3
chr1	145903002	.	GAC	G	.	alt_allele_in_normal;str_contraction	ECNT=1;HCNT=3;MAX_ED=.;MIN_ED=.;NLOD=9.92;RPA=10,9;RU=AC;STR;TLOD=7.34	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:41,10:0.191:2:8:.:1380,327:14:27	0/0:57,4:0.054:0:4:.:1779,128:25:32
chr1	146134204	.	T	C	.	alt_allele_in_normal	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=35.64;TLOD=6.53	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:251,5:0.023:3:2:0.600:8120,158:138:113	0/0:351,28:0.079:11:17:0.393:11512,928:186:165
chr1	147841253	.	A	G	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=2;HCNT=2;MAX_ED=73;MIN_ED=73;NLOD=111.68;TLOD=5.78	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:333,5:0.016:3:2:0.400:10272,162:164:169	0/0:436,4:0.010:1:3:0.750:13477,135:211:225
chr1	147841326	.	G	C	.	alt_allele_in_normal;clustered_events	ECNT=2;HCNT=3;MAX_ED=73;MIN_ED=73;NLOD=101.97;TLOD=12.40	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:383,10:0.023:7:3:0.700:13095,358:184:199	0/0:461,10:0.021:3:7:0.300:15939,352:216:245
chr1	148088343	.	A	G	.	germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.602;TLOD=6.35	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:0,2:1.00:1:1:0.500:0,69:0:0	0/0:8,0:0.00:0:0:.:269,0:4:4
chr1	148104140	.	C	G	.	PASS	ECNT=2;HCNT=1;MAX_ED=2;MIN_ED=2;NLOD=2.71;TLOD=7.54	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:3,2:0.400:0:2:1.00:0|1:148104140_C_G:111,65:0:3	0/0:13,0:0.00:0:0:.:0|1:148104140_C_G:470,0:5:8
chr1	148104142	.	G	A	.	PASS	ECNT=2;HCNT=1;MAX_ED=2;MIN_ED=2;NLOD=2.71;TLOD=7.54	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:3,2:0.400:0:2:0.00:0|1:148104140_C_G:107,65:0:3	0/0:13,0:0.00:0:0:.:0|1:148104140_C_G:463,0:5:8
chr1	148121840	.	C	T	.	PASS	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.01;TLOD=17.41	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:5,7:0.583:4:3:0.429:168,188:3:2	0/0:13,0:0.00:0:0:.:426,0:7:6
chr1	148166209	.	A	G	.	germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=11.23	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:0,3:1.00:2:1:0.333:0,107:0:0	0/0:4,0:0.00:0:0:.:133,0:2:2
chr1	149055991	.	T	A	.	clustered_events;t_lod_fstar	ECNT=2;HCNT=3;MAX_ED=7;MIN_ED=7;NLOD=30.10;TLOD=4.91	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:77,2:0.024:2:0:1.00:0|1:149055991_T_A:2365,68:28:49	0/0:103,0:0.00:0:0:.:0|1:149055991_T_A:3143,0:45:58
chr1	149055998	.	GA	G	.	clustered_events;t_lod_fstar	ECNT=2;HCNT=3;MAX_ED=7;MIN_ED=7;NLOD=26.79;RPA=5,4;RU=A;STR;TLOD=5.04	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:69,2:0.028:2:0:.:0|1:149055991_T_A:2340,65:21:48	0/0:91,0:0.00:0:0:.:0|1:149055991_T_A:3088,0:41:50
chr1	149073693	.	G	A	.	alt_allele_in_normal;t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=24.19;TLOD=4.13	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:69,4:0.055:2:2:0.500:1937,131:36:33	0/0:127,9:0.066:4:5:0.444:3540,289:51:76
chr1	149075630	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=2;HCNT=13;MAX_ED=14;MIN_ED=14;NLOD=69.32;TLOD=24.17	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:209,9:0.047:6:3:0.667:5950,286:121:88	0/0:328,8:0.031:4:4:0.500:9352,257:181:147
chr1	149075644	.	A	G	.	alt_allele_in_normal;clustered_events	ECNT=2;HCNT=6;MAX_ED=14;MIN_ED=14;NLOD=72.73;TLOD=11.54	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:241,11:0.042:6:5:0.455:7603,387:143:98	0/0:405,14:0.033:5:9:0.643:12603,474:229:176
chr1	150156958	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=42.03;TLOD=4.56	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:144,3:0.024:2:1:0.667:4565,93:71:73	0/0:162,0:0.00:0:0:.:5126,0:65:97
chr1	150352650	.	G	GTCT	.	clustered_events;germline_risk;homologous_mapping_event	ECNT=4;HCNT=1;MAX_ED=15;MIN_ED=2;NLOD=0.602;TLOD=22.50	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:0,5:1.00:4:1:.:0|1:150352650_G_GTCT:0,180:0:0	0/0:2,0:0.00:0:0:.:0|1:150352650_G_GTCT:62,0:0:2
chr1	150352652	.	GAGA	G	.	clustered_events;germline_risk;homologous_mapping_event	ECNT=4;HCNT=1;MAX_ED=15;MIN_ED=2;NLOD=0.903;TLOD=22.50	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:0,4:1.00:3:1:.:0|1:150352650_G_GTCT:0,112:0:0	0/0:3,0:0.00:0:0:.:0|1:150352650_G_GTCT:89,0:1:2
chr1	150352663	.	T	G	.	clustered_events;germline_risk;homologous_mapping_event	ECNT=4;HCNT=1;MAX_ED=15;MIN_ED=2;NLOD=1.51;TLOD=18.00	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:0,4:1.00:3:1:0.750:0|1:150352650_G_GTCT:0,110:0:0	0/0:5,0:0.00:0:0:.:0|1:150352650_G_GTCT:158,0:2:3
chr1	150352665	.	A	C	.	clustered_events;germline_risk;homologous_mapping_event	ECNT=4;HCNT=1;MAX_ED=15;MIN_ED=2;NLOD=1.51;TLOD=18.00	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:0,4:1.00:3:1:0.250:0|1:150352650_G_GTCT:0,135:0:0	0/0:5,0:0.00:0:0:.:0|1:150352650_G_GTCT:156,0:2:3
chr1	150472081	.	A	C	.	alt_allele_in_normal;germline_risk	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.79;TLOD=6.63	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:162,67:0.265:32:35:0.522:4530,187:53:109	0/0:185,71:0.292:32:39:0.549:5363,225:80:105
chr1	150559565	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=11.74;TLOD=4.66	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:25,2:0.074:0:2:0.00:869,68:12:13	0/0:39,0:0.00:0:0:.:1367,0:22:17
chr1	150577324	.	TTGG	T	.	alt_allele_in_normal;str_contraction	ECNT=1;HCNT=6;MAX_ED=.;MIN_ED=.;NLOD=94.35;RPA=5,4;RU=TGG;STR;TLOD=13.33	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:322,6:0.022:3:3:.:10859,202:161:161	0/0:382,3:5.865e-03:2:1:.:12939,105:183:199
chr1	151267275	.	A	G	.	alt_allele_in_normal	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=38.69;TLOD=8.11	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:157,6:0.039:1:5:0.833:4950,198:83:74	0/0:198,9:0.036:5:4:0.444:6246,315:93:105
chr1	152036882	.	TAAG	T	.	alt_allele_in_normal;str_contraction	ECNT=1;HCNT=24;MAX_ED=.;MIN_ED=.;NLOD=18.96;RPA=5,4;RU=AAG;STR;TLOD=6.47	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:93,3:0.033:1:2:.:2847,89:50:43	0/0:130,4:0.033:3:1:.:3928,120:73:57
chr1	152107523	.	G	C	.	t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=56.56;TLOD=5.72	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:168,3:0.019:1:2:0.333:5220,107:98:70	0/0:200,0:0.00:0:0:.:6212,0:121:79
chr1	152110480	.	GCTC	G	.	str_contraction	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=83.50;RPA=5,4;RU=CTC;STR;TLOD=6.69	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:223,3:0.014:2:1:.:7578,107:138:85	0/0:311,1:3.413e-03:1:0:.:10564,35:194:117
chr1	152155404	.	TTGTC	T	.	alt_allele_in_normal;str_contraction	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=298.85;RPA=3,2;RU=TGTC;STR;TLOD=11.67	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:883,7:7.500e-03:5:2:.:29436,240:490:393	0/0:1134,2:1.949e-03:2:0:.:37758,67:638:496
chr1	152215034	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=2;HCNT=11;MAX_ED=74;MIN_ED=74;NLOD=30.74;TLOD=22.29	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:545,21:0.040:9:12:0.571:16699,694:270:275	0/0:1202,112:0.089:54:58:0.518:36760,3661:579:623
chr1	152215108	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=2;HCNT=4;MAX_ED=74;MIN_ED=74;NLOD=122.74;TLOD=44.90	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:495,36:0.061:21:15:0.417:15880,1103:257:238	0/0:1309,85:0.060:37:48:0.565:42150,2672:569:740
chr1	152215642	.	C	T	.	alt_allele_in_normal	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=3.80;TLOD=121.95	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:802,81:0.091:43:38:0.469:24786,2471:411:391	0/0:2453,237:0.087:107:130:0.549:75723,7305:1118:1335
chr1	152216518	.	C	T	.	alt_allele_in_normal	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=138.96;TLOD=17.58	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:315,18:0.049:7:11:0.611:9044,586:141:174	0/0:1934,55:0.028:28:27:0.491:60754,1779:898:1036
chr1	152219851	.	T	A	.	alt_allele_in_normal;clustered_events	ECNT=2;HCNT=4;MAX_ED=18;MIN_ED=18;NLOD=117.71;TLOD=18.65	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:472,8:0.018:4:4:0.500:0|1:152219851_T_A:15448,278:234:238	0/0:637,34:0.054:17:17:0.500:0|1:152219851_T_A:20901,1131:299:338
chr1	152219869	.	T	C	.	alt_allele_in_normal;clustered_events	ECNT=2;HCNT=4;MAX_ED=18;MIN_ED=18;NLOD=134.59;TLOD=18.71	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:469,8:0.019:4:4:0.500:0|1:152219851_T_A:15312,230:232:237	0/0:594,22:0.041:11:11:0.500:0|1:152219851_T_A:19462,625:287:307
chr1	152352081	.	CTG	C	.	alt_allele_in_normal;str_contraction	ECNT=1;HCNT=3;MAX_ED=.;MIN_ED=.;NLOD=102.25;RPA=5,4;RU=TG;STR;TLOD=12.57	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:308,11:0.027:5:6:.:10651,386:179:129	0/0:421,5:0.012:2:3:.:14470,172:249:172
chr1	152664496	.	C	T	.	PASS	ECNT=1;HCNT=6;MAX_ED=.;MIN_ED=.;NLOD=19.52;TLOD=27.37	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:47,10:0.175:8:2:0.200:1658,343:28:19	0/0:65,0:0.00:0:0:.:2239,0:31:34
chr1	152805642	rs35436039	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=13.14	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,4:0.667:2:2:0.500:64,129:2:0	0/0:5,0:0.00:0:0:.:164,0:3:2
chr1	153982340	.	TAC	T	.	alt_allele_in_normal;str_contraction	ECNT=1;HCNT=5;MAX_ED=.;MIN_ED=.;NLOD=58.67;RPA=7,6;RU=AC;STR;TLOD=8.63	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:251,7:0.026:5:2:.:7749,221:109:142	0/0:327,11:0.035:5:6:.:10095,322:139:188
chr1	154708109	.	AGCT	A	.	alt_allele_in_normal;str_contraction	ECNT=1;HCNT=15;MAX_ED=.;MIN_ED=.;NLOD=48.01;RPA=5,4;RU=GCT;STR;TLOD=12.90	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:152,5:0.032:2:3:.:4899,166:82:70	0/0:230,5:0.022:4:1:.:7417,166:129:101
chr1	154869228	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=48.27;TLOD=4.50	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:123,4:0.026:3:1:0.750:3884,124:81:42	0/0:176,0:0.00:0:0:.:5634,0:112:64
chr1	155910969	.	C	CA	.	germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=8.08	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:0,2:1.00:0:2:.:0,73:0:0	0/0:5,0:0.00:0:0:.:176,0:4:1
chr1	155916630	.	CCT	C	.	alt_allele_in_normal;str_contraction	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=38.13;RPA=6,5;RU=CT;STR;TLOD=7.28	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:149,4:0.030:0:4:.:5028,133:87:62	0/0:178,3:0.018:1:2:.:5997,104:99:79
chr1	156069610	.	ATAT	A	.	alt_allele_in_normal;str_contraction	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=62.85;RPA=5,4;RU=TAT;STR;TLOD=11.29	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:201,6:0.025:3:3:.:6708,197:108:93	0/0:286,5:0.018:2:3:.:9544,172:169:117
chr1	156115187	.	A	G	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=12.85;TLOD=4.25	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:35,2:0.059:0:2:1.00:1157,66:19:16	0/0:44,0:0.00:0:0:.:1374,0:22:22
chr1	156259215	.	A	C	.	alt_allele_in_normal;germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.25;TLOD=10.41	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:20,14:0.424:7:7:0.500:550,132:10:10	0/0:23,8:0.258:4:4:0.500:631,45:12:11
chr1	156843388	.	C	G	.	PASS	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=71.97;TLOD=42.05	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:322,25:0.072:13:12:0.480:10857,753:152:170	0/0:267,1:4.000e-03:1:0:0.00:9163,28:143:124
chr1	156938522	.	ACAC	A	.	str_contraction	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=21.60;RPA=4,3;RU=CAC;STR;TLOD=8.25	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:64,4:0.047:2:2:.:1957,130:28:36	0/0:74,0:0.00:0:0:.:2291,0:33:41
chr1	159200553	.	C	T	.	germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.602;TLOD=10.64	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:0,3:1.00:1:2:0.667:0,93:0:0	0/0:2,0:0.00:0:0:.:68,0:1:1
chr1	161089237	.	TAGC	T	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=32.20;RPA=5,4;RU=AGC;STR;TLOD=4.44	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:165,2:0.014:1:1:.:5033,63:95:70	0/0:127,0:0.00:0:0:.:3880,0:65:62
chr1	161518124	.	C	T	.	alt_allele_in_normal;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=48.03;TLOD=4.16	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:208,4:0.021:2:2:0.500:6528,123:113:95	0/0:244,9:0.038:5:4:0.444:7587,264:117:127
chr1	162357097	.	CCAG	C	.	alt_allele_in_normal;str_contraction	ECNT=1;HCNT=6;MAX_ED=.;MIN_ED=.;NLOD=7.30;RPA=6,5;RU=CAG;STR;TLOD=13.11	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:60,5:0.077:2:3:.:2069,174:24:36	0/0:63,3:0.045:0:3:.:2185,104:27:36
chr1	162780065	.	TTC	T	.	alt_allele_in_normal;str_contraction	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=11.91;RPA=8,7;RU=TC;STR;TLOD=7.38	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:96,6:0.051:2:4:.:3043,188:58:38	0/0:82,4:0.049:3:1:.:2600,125:47:35
chr1	164559883	rs2275558	G	A	.	germline_risk;t_lod_fstar	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=0.902;TLOD=6.25	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,2:0.500:2:0:1.00:121,65:4:0	0/0:4,0:0.00:0:0:.:112,0:0:4
chr1	166975019	.	TTC	T	.	germline_risk;str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.00;RPA=9,8;RU=TC;STR;TLOD=4.43	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,2:0.500:1:1:.:64,64:1:1	0/0:7,0:0.00:0:0:.:220,0:3:4
chr1	167169753	rs35252315	C	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=15.68	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:7,6:0.455:4:2:0.333:238,201:4:3	0/0:5,0:0.00:0:0:.:175,0:2:3
chr1	168004031	.	A	G	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.91;TLOD=5.28	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:18,2:0.105:0:2:1.00:608,71:9:9	0/0:14,0:0.00:0:0:.:474,0:8:6
chr1	168579996	.	T	C	.	PASS	ECNT=1;HCNT=8;MAX_ED=.;MIN_ED=.;NLOD=6.32;TLOD=7.61	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:15,3:0.167:2:1:0.667:480,99:7:8	0/0:21,0:0.00:0:0:.:681,0:10:11
chr1	168696610	.	C	A	.	clustered_events;t_lod_fstar	ECNT=2;HCNT=1;MAX_ED=3;MIN_ED=3;NLOD=10.24;TLOD=4.58	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:48,2:0.044:0:2:1.00:0|1:168696610_C_A:1442,64:25:23	0/0:38,0:0.00:0:0:.:0|1:168696610_C_A:1145,0:18:20
chr1	168696613	.	T	A	.	clustered_events;t_lod_fstar	ECNT=2;HCNT=1;MAX_ED=3;MIN_ED=3;NLOD=10.23;TLOD=4.60	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:46,1:0.045:0:1:0.00:0|1:168696610_C_A:1501,30:24:22	0/0:37,0:0.00:0:0:.:0|1:168696610_C_A:1195,0:17:20
chr1	170370214	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=14.45;TLOD=4.00	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:34,2:0.056:0:2:0.00:1161,64:16:18	0/0:48,0:0.00:0:0:.:1641,0:27:21
chr1	171207831	.	T	C	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.02;TLOD=4.33	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:24,2:0.080:1:1:0.500:765,64:12:12	0/0:20,0:0.00:0:0:.:662,0:12:8
chr1	171670364	rs73041973	A	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=13.65	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,4:0.800:2:2:0.500:32,131:0:1	0/0:5,0:0.00:0:0:.:155,0:2:3
chr1	173981144	rs1884994	T	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=7.45	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:0,2:1.00:1:1:0.500:0,65:0:0	0/0:4,0:0.00:0:0:.:136,0:3:1
chr1	176699181	.	C	T	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=35.97;TLOD=4.09	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:165,3:0.020:2:1:0.333:5120,90:90:75	0/0:126,0:0.00:0:0:.:3831,0:63:63
chr1	179559745	.	C	CA	.	germline_risk;t_lod_fstar	ECNT=1;HCNT=3;MAX_ED=.;MIN_ED=.;NLOD=1.18;RPA=8,9;RU=A;STR;TLOD=4.16	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:7,2:0.286:0:2:.:250,69:7:0	0/0:4,0:0.00:0:0:.:120,0:3:1
chr1	181710965	.	AAG	A	.	alt_allele_in_normal;str_contraction;t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=17.82;RPA=7,6;RU=AG;STR;TLOD=5.94	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:137,4:0.032:3:1:.:4598,136:70:67	0/0:103,4:0.040:2:2:.:3404,123:66:37
chr1	184719103	.	CGT	C	.	alt_allele_in_normal;germline_risk;str_contraction	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.02;RPA=9,8;RU=GT;STR;TLOD=6.43	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:25,4:0.138:3:1:.:813,137:11:14	0/0:34,2:0.056:2:0:.:1146,66:18:16
chr1	186308185	.	A	C	.	alt_allele_in_normal;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=91.68;TLOD=4.32	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:420,18:0.045:13:5:0.278:12507,205:161:259	0/0:386,14:0.037:10:4:0.286:11561,120:145:241
chr1	200847392	.	TG	T	.	t_lod_fstar	ECNT=2;HCNT=1;MAX_ED=2;MIN_ED=2;NLOD=2.69;TLOD=4.97	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:2,2:0.500:1:1:.:0|1:200847392_TG_T:70,70:2:0	0/0:9,0:0.00:0:0:.:0|1:200847392_TG_T:299,0:7:2
chr1	200847394	.	TG	T	.	t_lod_fstar	ECNT=2;HCNT=1;MAX_ED=2;MIN_ED=2;NLOD=2.69;TLOD=4.98	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:2,2:0.500:1:1:.:0|1:200847392_TG_T:66,69:2:0	0/0:9,0:0.00:0:0:.:0|1:200847392_TG_T:289,0:7:2
chr1	202604518	.	GTTC	G	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=23.71;RPA=4,3;RU=TTC;STR;TLOD=4.60	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:119,2:0.017:0:2:.:4117,71:65:54	0/0:97,1:0.011:0:1:.:3323,35:51:46
chr1	203497019	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=19.81;TLOD=5.74	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:89,4:0.036:2:2:0.500:2681,130:42:47	0/0:73,0:0.00:0:0:.:2217,0:34:39
chr1	204156336	.	TCAGA	T	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=8.88;RPA=7,6;RU=CAGA;STR;TLOD=6.06	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:19,3:0.045:1:2:.:464,95:9:5	0/0:31,0:0.00:0:0:.:636,0:10:9
chr1	204157018	.	A	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=17.57	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:3,6:0.667:3:3:0.500:98,172:1:2	0/0:6,0:0.00:0:0:.:204,0:2:4
chr1	205009451	.	A	T	.	t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=15.30;TLOD=4.01	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:48,2:0.040:0:2:1.00:1527,67:26:22	0/0:53,0:0.00:0:0:.:1679,0:29:24
chr1	207473477	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=10.83;TLOD=4.00	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:34,2:0.056:1:1:0.500:1219,64:23:11	0/0:36,0:0.00:0:0:.:1250,0:17:19
chr1	207614451	.	T	C	.	alt_allele_in_normal	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=20.30;TLOD=8.55	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:69,6:0.081:2:4:0.333:2246,193:34:35	0/0:94,2:0.013:2:0:1.00:3067,65:54:40
chr1	207717616	.	C	T	.	t_lod_fstar	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=51.70;TLOD=4.15	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:218,3:0.015:1:2:0.667:6640,98:113:105	0/0:200,0:0.00:0:0:.:6138,0:94:106
chr1	208027422	.	C	T	.	t_lod_fstar	ECNT=1;HCNT=3;MAX_ED=.;MIN_ED=.;NLOD=6.32;TLOD=5.03	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:18,2:0.100:1:1:0.500:638,69:8:10	0/0:21,0:0.00:0:0:.:743,0:12:9
chr1	209622950	.	A	C	.	alt_allele_in_normal;clustered_events	ECNT=2;HCNT=3;MAX_ED=10;MIN_ED=10;NLOD=21.57;TLOD=10.78	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:246,34:0.077:28:6:0.176:0|1:209622950_A_C:6997,133:122:124	0/0:212,20:0.102:18:2:0.100:0|1:209622950_A_C:6183,63:106:106
chr1	209622960	.	A	C	.	alt_allele_in_normal;clustered_events	ECNT=2;HCNT=3;MAX_ED=10;MIN_ED=10;NLOD=5.53;TLOD=11.66	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:249,46:0.096:33:13:0.283:0|1:209622950_A_C:7276,288:125:124	0/0:209,37:0.170:26:11:0.297:0|1:209622950_A_C:6153,204:103:106
chr1	211750945	.	A	G	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=10.83;TLOD=4.65	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:33,2:0.059:2:0:0.00:1025,70:13:20	0/0:37,0:0.00:0:0:.:1181,0:26:11
chr1	212309326	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=9;HCNT=8;MAX_ED=35;MIN_ED=10;NLOD=16.60;TLOD=7.90	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:82,3:0.036:2:1:0.333:0|1:212309326_C_T:2511,66:34:48	0/0:102,6:0.058:3:3:0.500:0|1:212309326_C_T:3089,179:65:37
chr1	212309336	.	A	G	.	alt_allele_in_normal;clustered_events	ECNT=9;HCNT=8;MAX_ED=35;MIN_ED=10;NLOD=11.50;TLOD=7.83	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:83,3:0.034:2:1:0.333:0|1:212309326_C_T:2683,105:40:43	0/0:92,7:0.069:3:4:0.571:0|1:212309326_C_T:2965,251:60:32
chr1	212309337	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=9;HCNT=8;MAX_ED=35;MIN_ED=10;NLOD=10.90;TLOD=7.88	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:82,3:0.036:2:1:0.667:0|1:212309326_C_T:2790,99:39:43	0/0:92,7:0.071:3:4:0.429:0|1:212309326_C_T:3138,232:61:31
chr1	212309347	.	G	T	.	alt_allele_in_normal;clustered_events	ECNT=9;HCNT=8;MAX_ED=35;MIN_ED=10;NLOD=5.19;TLOD=7.88	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:77,3:0.036:2:1:0.667:0|1:212309326_C_T:2635,95:39:38	0/0:86,7:0.084:3:4:0.429:0|1:212309326_C_T:2947,227:58:28
chr1	212309349	.	T	A	.	alt_allele_in_normal;clustered_events	ECNT=9;HCNT=8;MAX_ED=35;MIN_ED=10;NLOD=5.19;TLOD=7.91	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:78,3:0.037:2:1:0.667:0|1:212309326_C_T:2493,99:41:37	0/0:88,8:0.084:4:4:0.500:0|1:212309326_C_T:2779,265:60:28
chr1	212309351	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=9;HCNT=8;MAX_ED=35;MIN_ED=10;NLOD=5.49;TLOD=7.93	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:79,3:0.037:2:1:0.333:0|1:212309326_C_T:2610,102:42:37	0/0:86,8:0.083:4:4:0.500:0|1:212309326_C_T:2877,267:57:29
chr1	212309352	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=9;HCNT=8;MAX_ED=35;MIN_ED=10;NLOD=5.49;TLOD=11.08	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:80,3:0.049:2:1:0.333:0|1:212309326_C_T:2662,103:43:37	0/0:86,8:0.083:4:4:0.500:0|1:212309326_C_T:2905,269:57:29
chr1	212309356	.	G	C	.	alt_allele_in_normal;clustered_events	ECNT=9;HCNT=8;MAX_ED=35;MIN_ED=10;NLOD=6.10;TLOD=10.98	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:80,4:0.047:3:1:0.750:0|1:212309326_C_T:2456,92:46:34	0/0:88,8:0.082:4:4:0.500:0|1:212309326_C_T:2684,234:58:30
chr1	212309361	.	C	T	.	alt_allele_in_normal;clustered_events;germline_risk	ECNT=9;HCNT=8;MAX_ED=35;MIN_ED=10;NLOD=1.60;TLOD=11.06	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:81,4:0.049:3:1:0.250:0|1:212309326_C_T:2463,121:48:33	0/0:85,8:0.085:4:4:0.500:0|1:212309326_C_T:2642,263:52:33
chr1	212309434	.	A	G	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=3;HCNT=12;MAX_ED=5;MIN_ED=3;NLOD=16.74;TLOD=4.81	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:100,2:0.022:1:1:0.500:0|1:212309434_A_G:3268,69:67:33	0/0:113,3:0.031:2:1:0.333:0|1:212309434_A_G:3613,98:63:50
chr1	212309437	.	T	C	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=3;HCNT=12;MAX_ED=5;MIN_ED=3;NLOD=16.44;TLOD=4.79	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:100,2:0.021:1:1:0.500:0|1:212309434_A_G:3207,68:68:32	0/0:113,2:0.031:1:1:0.500:0|1:212309434_A_G:3630,72:64:49
chr1	212309439	.	G	A	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=3;HCNT=12;MAX_ED=5;MIN_ED=3;NLOD=20.50;TLOD=4.83	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:99,1:0.022:1:0:1.00:0|1:212309434_A_G:3341,30:66:33	0/0:115,2:0.020:1:1:0.500:0|1:212309434_A_G:3910,59:64:51
chr1	214630674	.	GTC	G	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=12;MAX_ED=.;MIN_ED=.;NLOD=14.46;RPA=7,6;RU=TC;STR;TLOD=4.93	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:74,4:0.041:3:1:.:2566,140:33:41	0/0:62,1:0.017:0:1:.:2110,35:34:28
chr1	218405384	.	ACT	A	.	alt_allele_in_normal;germline_risk;str_contraction	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=0.605;RPA=9,8;RU=CT;STR;TLOD=8.98	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:41,6:0.067:1:5:.:1055,161:20:16	0/0:28,3:0.053:2:1:.:717,92:10:13
chr1	220024946	rs61830400	T	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=7.55	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:0,2:1.00:0:2:0.00:0,66:0:0	0/0:5,0:0.00:0:0:.:162,0:1:4
chr1	224574723	.	T	C	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=11.44;TLOD=4.23	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:54,3:0.041:1:2:0.333:1785,103:29:25	0/0:40,0:0.00:0:0:.:1334,0:25:15
chr1	225887908	rs12753531	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.76;TLOD=18.57	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,6:0.600:5:1:0.833:139,191:4:0	0/0:6,0:0.00:0:0:.:176,0:4:2
chr1	226388569	rs2255403	A	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.61;TLOD=31.93	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:13,10:0.435:6:4:0.400:413,340:9:4	0/0:12,0:0.00:0:0:.:380,0:3:9
chr1	227030368	.	C	CAT	.	PASS	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=3.62;TLOD=64.33	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:6,14:0.727:9:5:.:212,481:2:4	0/0:12,0:0.00:0:0:.:407,0:7:5
chr1	227033521	rs11586734	C	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.71;TLOD=13.40	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,4:0.500:2:2:0.500:137,139:2:2	0/0:9,0:0.00:0:0:.:303,0:6:3
chr1	227493862	.	A	G	.	alt_allele_in_normal;clustered_events	ECNT=6;HCNT=1;MAX_ED=22;MIN_ED=4;NLOD=6.35;TLOD=31.67	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:63,10:0.139:6:4:0.400:0|1:227493862_A_G:2076,332:38:25	0/0:50,2:0.039:1:1:0.500:0|1:227493862_A_G:1657,68:26:24
chr1	227493866	.	T	C	.	alt_allele_in_normal;clustered_events	ECNT=6;HCNT=1;MAX_ED=22;MIN_ED=4;NLOD=7.26;TLOD=31.55	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:64,9:0.135:5:4:0.556:0|1:227493862_A_G:2047,285:39:25	0/0:48,2:0.037:1:1:0.500:0|1:227493862_A_G:1562,67:25:23
chr1	227493872	.	A	C	.	alt_allele_in_normal;clustered_events	ECNT=6;HCNT=1;MAX_ED=22;MIN_ED=4;NLOD=2.45;TLOD=28.90	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:60,9:0.130:5:4:0.444:0|1:227493862_A_G:1974,297:36:24	0/0:48,3:0.057:1:2:0.667:0|1:227493862_A_G:1585,105:27:21
chr1	227493873	.	G	C	.	alt_allele_in_normal;clustered_events;germline_risk	ECNT=6;HCNT=1;MAX_ED=22;MIN_ED=4;NLOD=2.15;TLOD=32.67	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:60,8:0.147:4:4:0.500:0|1:227493862_A_G:2082,264:36:24	0/0:50,3:0.058:1:2:0.333:0|1:227493862_A_G:1770,94:28:22
chr1	227493880	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=6;HCNT=1;MAX_ED=22;MIN_ED=4;NLOD=6.35;TLOD=25.54	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:51,8:0.125:3:5:0.375:0|1:227493862_A_G:1634,263:32:19	0/0:50,2:0.039:0:2:0.00:0|1:227493862_A_G:1593,68:29:21
chr1	227493884	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=6;HCNT=1;MAX_ED=22;MIN_ED=4;NLOD=5.15;TLOD=25.90	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:54,8:0.138:3:5:0.625:0|1:227493862_A_G:1808,260:33:21	0/0:46,2:0.043:0:2:1.00:0|1:227493862_A_G:1593,68:25:21
chr1	227747579	rs2236361	C	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=14.54	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:10,5:0.333:4:1:0.200:334,163:9:1	0/0:4,0:0.00:0:0:.:139,0:2:2
chr1	228249817	.	G	A	.	germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=26.88	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:6,9:0.600:4:5:0.444:202,275:2:4	0/0:6,0:0.00:0:0:.:199,0:2:4
chr1	228316010	rs116266256	G	A	.	germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=4.21;TLOD=39.74	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:9,13:0.571:8:5:0.615:312,422:2:7	0/0:14,0:0.00:0:0:.:472,0:6:8
chr1	228449123	rs7529055	T	G	.	germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=4.21;TLOD=56.90	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:8,17:0.667:10:7:0.588:253,594:5:3	0/0:15,0:0.00:0:0:.:473,0:4:11
chr1	229431675	.	A	C	.	alt_allele_in_normal;clustered_events;germline_risk	ECNT=2;HCNT=6;MAX_ED=12;MIN_ED=12;NLOD=1.32;TLOD=9.66	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:103,35:0.242:24:11:0.314:2895,242:50:53	0/0:63,22:0.259:10:12:0.545:1779,142:36:27
chr1	229431687	.	A	C	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=2;HCNT=6;MAX_ED=12;MIN_ED=12;NLOD=8.92;TLOD=4.17	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:87,30:0.250:21:9:0.300:2321,196:37:50	0/0:61,13:0.176:9:4:0.308:1586,95:28:33
chr1	229463667	rs35944758	C	T	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=0.773;TLOD=71.20	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:15,23:0.611:13:10:0.435:522,743:5:10	0/0:28,2:0.071:2:0:0.00:947,67:12:16
chr1	229483904	.	C	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=18.71	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,6:0.750:1:5:0.833:67,178:1:1	0/0:4,0:0.00:0:0:.:137,0:3:1
chr1	229632550	rs1473719	C	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=19.06	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:7,6:0.462:3:3:0.500:250,201:4:3	0/0:6,0:0.00:0:0:.:214,0:5:1
chr1	230323730	rs12083735	C	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=8.68	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:7,3:0.300:1:2:0.667:189,99:4:3	0/0:4,0:0.00:0:0:.:108,0:4:0
chr1	230362486	rs2820384	C	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=10.02	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:3,3:0.500:3:0:0.00:99,104:3:0	0/0:4,0:0.00:0:0:.:145,0:2:2
chr1	230642497	.	AC	A	.	germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.901;RPA=6,5;RU=C;STR;TLOD=7.27	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,3:0.600:1:2:.:63,95:1:1	0/0:3,0:0.00:0:0:.:94,0:1:2
chr1	230801548	.	ATC	A	.	alt_allele_in_normal;str_contraction	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=7.71;RPA=7,6;RU=TC;STR;TLOD=8.48	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:130,7:0.043:4:3:.:4132,228:65:65	0/0:41,2:0.027:0:2:.:1325,66:18:23
chr1	230911646	rs2153049	G	A	.	germline_risk	DB;ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=18.00	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,5:0.833:2:3:0.400:36,168:0:1	0/0:4,0:0.00:0:0:.:142,0:2:2
chr1	230928832	.	T	TCTC	.	germline_risk	ECNT=1;HCNT=8;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=21.85	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:13,6:0.316:2:4:.:429,194:8:5	0/0:6,0:0.00:0:0:.:188,0:2:4
chr1	231564481	.	T	TTG	.	alt_allele_in_normal	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.33;RPA=9,10;RU=TG;STR;TLOD=40.19	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:62,55:0.240:33:22:.:1906,1802:29:30	0/0:50,8:0.059:5:3:.:1636,263:30:20
chr1	233353959	.	TTG	T	.	alt_allele_in_normal;str_contraction	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.04;RPA=9,8;RU=TG;STR;TLOD=7.98	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:104,9:0.042:4:3:.:3491,211:64:40	0/0:70,7:0.044:2:4:.:2371,166:40:30
chr1	234285434	rs7518644	C	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=20.17	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:5,6:0.545:2:4:0.667:180,206:2:3	0/0:7,0:0.00:0:0:.:244,0:4:3
chr1	234374516	rs4300255	A	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.41;TLOD=30.60	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:8,9:0.529:4:5:0.556:264,316:6:2	0/0:8,0:0.00:0:0:.:272,0:3:5
chr1	234392246	rs3754318	A	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.01;TLOD=17.32	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:14,5:0.263:1:4:0.800:470,166:4:10	0/0:7,1:0.100:0:1:1.00:238,2:4:3
chr1	234393806	rs2175594	C	T	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=2.01;TLOD=138.35	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:54,53:0.489:25:28:0.528:1585,1707:26:28	0/0:44,3:0.068:2:1:0.333:1338,98:25:19
chr1	234420900	rs6669819	T	A	.	germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=20.37	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:13,7:0.350:4:3:0.571:423,227:9:4	0/0:5,0:0.00:0:0:.:163,0:4:1
chr1	234429836	rs915185	C	T	.	germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=3.31;TLOD=29.61	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:3,9:0.750:4:5:0.556:106,283:3:0	0/0:11,0:0.00:0:0:.:364,0:7:4
chr1	234430339	rs2236587	A	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=42.78	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:11,13:0.542:6:7:0.538:346,438:5:6	0/0:5,0:0.00:0:0:.:146,0:4:1
chr1	234433286	.	A	AC	.	PASS	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.71;TLOD=10.32	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:3,3:0.500:2:1:.:88,88:2:1	0/0:9,0:0.00:0:0:.:277,0:5:4
chr1	237633803	rs1967580	C	A	.	germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=16.91	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,5:0.833:2:3:0.600:26,157:1:0	0/0:7,0:0.00:0:0:.:249,0:3:4
chr1	237882695	rs2275694	T	C	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.07;TLOD=66.68	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:25,20:0.444:11:9:0.550:809,706:12:13	0/0:28,2:0.067:1:1:0.500:898,70:20:8
chr1	237926957	rs548164	A	G	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.65;TLOD=55.40	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:23,20:0.465:12:8:0.400:721,588:15:8	0/0:22,1:0.043:0:1:1.00:714,28:10:12
chr1	240092268	.	GGGC	G	.	str_contraction	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.39;RPA=5,4;RU=GGC;STR;TLOD=24.54	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,7:0.667:2:5:.:111,236:0:4	0/0:10,0:0.00:0:0:.:342,0:6:4
chr1	240093522	rs10926124	C	A	.	alt_allele_in_normal	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.05;TLOD=50.80	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:29,18:0.370:12:6:0.333:811,592:12:17	0/0:25,1:0.038:1:0:0.00:652,32:10:15
chr1	240123473	rs3820506	C	G	.	germline_risk;t_lod_fstar	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=6.20	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,2:0.333:2:0:0.00:140,69:1:3	0/0:7,0:0.00:0:0:.:239,0:3:4
chr1	240144900	rs12127949	T	C	.	alt_allele_in_normal;clustered_events;germline_risk	DB;ECNT=2;HCNT=2;MAX_ED=48;MIN_ED=48;NLOD=3.98;TLOD=99.15	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:41,35:0.443:15:20:0.429:1279,1178:21:20	0/0:39,2:0.049:2:0:1.00:1244,74:20:19
chr1	240144948	.	G	A	.	clustered_events;t_lod_fstar	ECNT=2;HCNT=2;MAX_ED=48;MIN_ED=48;NLOD=11.73;TLOD=5.66	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:71,3:0.043:2:1:0.667:2265,96:32:39	0/0:41,0:0.00:0:0:.:1292,0:23:18
chr1	241723488	rs56403213	T	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=18.52	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:7,7:0.500:4:3:0.571:227,194:4:3	0/0:7,0:0.00:0:0:.:227,0:5:2
chr1	241749372	rs6669629	A	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.41;TLOD=9.93	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:5,3:0.375:2:1:0.333:167,108:2:3	0/0:8,0:0.00:0:0:.:266,0:3:5
chr1	241749760	.	C	CT	.	alt_allele_in_normal	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.81;RPA=5,6;RU=T;STR;TLOD=42.15	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:30,22:0.429:7:15:.:1068,781:14:16	0/0:24,2:0.040:0:2:.:853,70:14:10
chr1	241779969	rs41308208	C	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.31;TLOD=38.27	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:7,11:0.611:5:6:0.545:244,383:3:4	0/0:12,0:0.00:0:0:.:421,0:3:9
chr1	244560618	rs7522899	C	G	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.85;TLOD=93.50	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:25,28:0.549:17:11:0.393:847,954:14:11	0/0:27,1:0.037:0:1:1.00:911,28:13:14
chr1	244583749	rs6429486	G	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=12.79	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:6,4:0.400:2:2:0.500:210,138:4:2	0/0:6,0:0.00:0:0:.:212,0:5:1
chr1	244694715	rs11589363	C	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=20.94	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:10,7:0.412:2:5:0.714:300,226:5:5	0/0:5,0:0.00:0:0:.:140,0:3:2
chr1	246518302	rs58090432	A	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=39.74	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:11,13:0.545:8:5:0.385:359,444:6:5	0/0:8,0:0.00:0:0:.:257,0:0:8
chr1	247310587	rs61838684	C	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.82;TLOD=12.53	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:3,4:0.571:3:1:0.250:105,127:0:3	0/0:16,0:0.00:0:0:.:575,0:10:6
chr1	247433847	.	T	G	.	alt_allele_in_normal;clustered_events;germline_risk	ECNT=2;HCNT=2;MAX_ED=12;MIN_ED=12;NLOD=1.22;TLOD=12.98	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:22,4:0.167:4:0:1.00:0|1:247433847_T_G:706,149:12:10	0/0:19,1:0.053:1:0:1.00:0|1:247433847_T_G:596,30:9:10
chr1	247433859	.	C	T	.	alt_allele_in_normal;clustered_events;germline_risk	ECNT=2;HCNT=2;MAX_ED=12;MIN_ED=12;NLOD=0.617;TLOD=9.83	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:17,3:0.150:3:0:0.00:0|1:247433847_T_G:583,102:8:9	0/0:18,1:0.059:1:0:0.00:0|1:247433847_T_G:630,31:9:9
chr1	247672606	rs28556931	T	A	.	alt_allele_in_normal	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=7.12;TLOD=93.06	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:33,31:0.483:13:18:0.419:1057,1039:21:12	0/0:48,2:0.041:1:1:0.500:1558,67:28:20
chr1	248084432	.	G	C	.	alt_allele_in_normal;clustered_events	ECNT=3;HCNT=24;MAX_ED=13;MIN_ED=11;NLOD=6.14;TLOD=48.98	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:95,25:0.212:19:6:0.760:0|1:248084432_G_C:3008,855:51:44	0/0:106,8:0.069:4:4:0.500:0|1:248084432_G_C:3383,271:51:55
chr1	248084443	.	GC	G	.	alt_allele_in_normal;clustered_events	ECNT=3;HCNT=24;MAX_ED=13;MIN_ED=11;NLOD=9.81;RPA=2,1;RU=C;STR;TLOD=23.80	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:77,7:0.157:5:2:.:0|1:248084432_G_C:2618,227:44:33	0/0:102,6:0.061:4:2:.:0|1:248084432_G_C:3431,200:51:51
chr1	248084445	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=3;HCNT=24;MAX_ED=13;MIN_ED=11;NLOD=7.10;TLOD=9.07	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:77,6:0.089:4:2:0.333:0|1:248084432_G_C:2304,180:44:33	0/0:98,7:0.067:5:2:0.286:0|1:248084432_G_C:2919,220:49:49
chr1	248122683	.	T	A	.	alt_allele_in_normal	ECNT=1;HCNT=39;MAX_ED=.;MIN_ED=.;NLOD=23.59;TLOD=11.74	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:243,8:0.035:4:4:0.500:7892,247:136:107	0/0:114,3:0.026:1:2:0.333:3767,93:62:52
chr1	248145718	.	G	A	.	alt_allele_in_normal	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=27.84;TLOD=15.86	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:349,12:0.030:9:3:0.750:12299,391:188:161	0/0:182,9:0.044:8:1:0.889:6499,293:112:70
chr1	248273610	.	T	C	.	alt_allele_in_normal	ECNT=1;HCNT=72;MAX_ED=.;MIN_ED=.;NLOD=6.81;TLOD=7.35	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:192,5:0.027:2:3:0.400:6228,146:90:102	0/0:147,37:0.211:24:13:0.649:4729,1055:89:58
chr1	248295540	.	T	C	.	clustered_events	ECNT=2;HCNT=3;MAX_ED=12;MIN_ED=12;NLOD=28.89;TLOD=9.52	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:165,5:0.032:2:3:0.400:5299,183:83:82	0/0:116,0:0.00:0:0:.:3726,0:61:55
chr1	248295552	.	A	G	.	clustered_events	ECNT=2;HCNT=2;MAX_ED=12;MIN_ED=12;NLOD=27.69;TLOD=9.30	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:148,5:0.035:2:3:0.600:4853,174:70:78	0/0:110,0:0.00:0:0:.:3649,0:58:52
chr1	248573929	.	T	C	.	PASS	ECNT=1;HCNT=33;MAX_ED=.;MIN_ED=.;NLOD=8.43;TLOD=33.84	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:36,15:0.294:5:10:0.333:1155,517:20:16	0/0:38,0:0.00:0:0:.:1244,0:19:19
chr1	248649970	.	C	A	.	PASS	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=9.93;TLOD=6.64	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:70,5:0.074:3:2:0.400:2341,161:34:36	0/0:37,1:0.029:0:1:1.00:1300,34:14:23
chr1	248650908	.	GAT	G	.	alt_allele_in_normal;clustered_events;str_contraction	ECNT=2;HCNT=4;MAX_ED=7;MIN_ED=7;NLOD=5.41;RPA=2,1;RU=AT;STR;TLOD=26.63	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:22,8:0.267:5:3:.:0|1:248650908_GAT_G:778,253:12:10	0/0:18,1:0.053:0:1:.:0|1:248650908_GAT_G:641,36:7:11
chr1	248650915	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=2;HCNT=4;MAX_ED=7;MIN_ED=7;NLOD=5.12;TLOD=26.62	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:21,7:0.267:4:3:0.429:0|1:248650908_GAT_G:723,212:11:10	0/0:17,1:0.056:0:1:1.00:0|1:248650908_GAT_G:600,30:7:10
chr1	248681416	.	T	C	.	t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=12.64;TLOD=4.22	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:63,1:0.034:0:1:0.00:2025,17:35:28	0/0:46,0:0.00:0:0:.:1483,0:26:20
chr1	248774991	rs12750069	G	A	.	germline_risk	DB;ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=26.59	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:5,8:0.615:4:4:0.500:173,270:4:1	0/0:4,0:0.00:0:0:.:133,0:1:3
chr1	248813215	rs11205412	T	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=10.75	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,3:0.750:0:3:0.00:32,103:1:0	0/0:5,0:0.00:0:0:.:167,0:2:3
chr1	248916508	rs6704311	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=24.76	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:6,8:0.571:6:2:0.750:202,251:2:4	0/0:6,0:0.00:0:0:.:198,0:4:2
chr2	8958756	.	C	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.31;TLOD=4.74	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:14,2:0.125:2:0:0.00:507,64:6:8	0/0:11,0:0.00:0:0:.:398,0:5:6
chr2	11578315	.	T	C	.	alt_allele_in_normal;t_lod_fstar	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=5.91;TLOD=5.87	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:177,71:0.245:41:30:0.577:4820,166:88:89	0/0:154,49:0.268:23:26:0.469:4565,104:77:77
chr2	21009451	.	T	C	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=34.41;TLOD=4.48	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:127,3:0.025:2:1:0.667:4092,91:76:51	0/0:126,1:8.621e-03:1:0:1.00:4009,34:65:61
chr2	23944241	.	C	T	.	alt_allele_in_normal;t_lod_fstar	ECNT=2;HCNT=1;MAX_ED=1;MIN_ED=1;NLOD=15.57;TLOD=5.00	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:81,3:0.027:2:1:0.333:0|1:23944241_C_T:2792,98:40:41	0/0:70,2:0.045:2:0:0.00:0|1:23944241_C_T:2439,59:41:29
chr2	23944242	.	A	G	.	alt_allele_in_normal;t_lod_fstar	ECNT=2;HCNT=1;MAX_ED=1;MIN_ED=1;NLOD=15.57;TLOD=5.00	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:81,3:0.027:2:1:0.333:0|1:23944241_C_T:2665,103:40:41	0/0:70,3:0.045:2:1:0.333:0|1:23944241_C_T:2299,100:41:29
chr2	24705258	.	T	C	.	t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=23.43;TLOD=4.27	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:90,2:0.024:0:2:0.00:2824,74:47:43	0/0:83,0:0.00:0:0:.:2594,0:46:37
chr2	25980594	.	GGTT	G	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=39.28;RPA=4,3;RU=GTT;STR;TLOD=4.37	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:171,2:0.013:1:1:.:5184,51:98:73	0/0:148,0:0.00:0:0:.:4569,0:86:62
chr2	27224639	.	A	G	.	t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=16.25;TLOD=4.34	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:75,2:0.026:2:0:0.00:2345,74:47:28	0/0:54,0:0.00:0:0:.:1677,0:30:24
chr2	27447696	.	G	GAAAACCT	.	t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=13.58;TLOD=5.49	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:42,2:0.047:2:0:.:1416,70:22:20	0/0:48,0:0.00:0:0:.:1631,0:25:23
chr2	29197729	.	TCA	T	.	str_contraction	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=7.55;RPA=7,6;RU=CA;STR;TLOD=7.94	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:40,4:0.047:3:1:.:1155,126:14:23	0/0:38,1:0.014:1:0:.:1116,32:18:19
chr2	30770624	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.91;TLOD=4.53	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:18,2:0.100:0:2:0.00:607,64:10:8	0/0:13,0:0.00:0:0:.:445,0:6:7
chr2	32202324	.	A	G	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=14.75;TLOD=5.06	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:25,2:0.074:1:1:0.500:832,72:10:15	0/0:49,0:0.00:0:0:.:1611,0:21:28
chr2	32518832	.	A	G	.	t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=17.15;TLOD=4.56	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:53,2:0.043:2:0:0.00:1761,72:29:24	0/0:63,0:0.00:0:0:.:2120,0:40:23
chr2	33558767	.	A	T	.	t_lod_fstar	ECNT=1;HCNT=16;MAX_ED=.;MIN_ED=.;NLOD=24.98;TLOD=5.83	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:77,3:0.039:2:1:0.333:2466,99:40:37	0/0:90,0:0.00:0:0:.:2934,0:42:48
chr2	36464699	.	AGAG	A	.	alt_allele_in_normal;str_contraction	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=24.28;RPA=4,3;RU=GAG;STR;TLOD=8.06	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:136,4:0.031:2:2:.:4565,136:78:58	0/0:121,2:0.018:1:1:.:4065,64:66:55
chr2	37096284	rs56020915	A	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=13.38	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:6,4:0.400:1:3:0.750:201,144:2:4	0/0:4,0:0.00:0:0:.:132,0:0:4
chr2	37372476	.	ATG	A	.	alt_allele_in_normal;str_contraction	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=12.33;RPA=9,8;RU=TG;STR;TLOD=8.17	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:66,6:0.087:3:3:.:2094,190:36:30	0/0:68,3:0.043:3:0:.:2189,94:41:27
chr2	43528032	.	T	C	.	t_lod_fstar	ECNT=1;HCNT=12;MAX_ED=.;MIN_ED=.;NLOD=14.45;TLOD=4.44	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:52,2:0.037:1:1:0.500:1733,72:27:25	0/0:48,0:0.00:0:0:.:1603,0:31:17
chr2	43551718	.	GAA	G	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.72;RPA=11,9;RU=A;STR;TLOD=4.74	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:23,4:0.087:0:4:.:34,139:1:0	0/0:28,0:0.00:0:0:.:98,0:2:1
chr2	44942290	.	AGGC	A	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.41;RPA=7,6;RU=GGC;STR;TLOD=5.30	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:19,2:0.100:2:0:.:592,63:11:8	0/0:8,0:0.00:0:0:.:250,0:4:4
chr2	49282878	.	C	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=9.93;TLOD=4.26	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:25,2:0.074:2:0:0.00:866,64:13:12	0/0:33,0:0.00:0:0:.:1147,0:21:12
chr2	53908292	rs805319	G	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=13.22	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:5,4:0.444:2:2:0.500:180,140:3:2	0/0:5,0:0.00:0:0:.:173,0:1:4
chr2	55224751	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.01;TLOD=5.19	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:10,2:0.182:0:2:0.00:358,65:4:6	0/0:10,0:0.00:0:0:.:329,0:5:5
chr2	62349240	rs3935828	G	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=13.65	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,4:0.667:3:1:0.750:74,134:2:0	0/0:6,0:0.00:0:0:.:214,0:3:3
chr2	63056123	.	GCCA	G	.	alt_allele_in_normal;str_contraction	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=23.17;RPA=5,4;RU=CCA;STR;TLOD=10.61	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:107,4:0.038:1:3:.:3536,131:51:56	0/0:108,2:0.019:2:0:.:3634,68:42:66
chr2	63856458	.	A	C	.	alt_allele_in_normal;t_lod_fstar	ECNT=1;HCNT=32;MAX_ED=.;MIN_ED=.;NLOD=9.57;TLOD=5.02	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:133,51:0.253:33:18:0.353:3305,282:65:68	0/0:136,39:0.234:25:14:0.359:3330,240:58:78
chr2	65666828	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=9;HCNT=2;MAX_ED=101;MIN_ED=4;NLOD=29.24;TLOD=9.78	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:165,4:0.024:2:2:0.500:0|1:65666828_C_T:5654,125:79:86	0/0:137,7:0.054:2:5:0.714:0|1:65666828_C_T:4653,211:57:80
chr2	65666832	.	A	C	.	alt_allele_in_normal;clustered_events	ECNT=9;HCNT=2;MAX_ED=101;MIN_ED=4;NLOD=27.15;TLOD=9.67	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:171,4:0.022:2:2:0.500:0|1:65666828_C_T:5544,133:83:88	0/0:141,11:0.076:4:7:0.636:0|1:65666828_C_T:4590,365:61:80
chr2	65666833	.	A	G	.	alt_allele_in_normal;clustered_events	ECNT=9;HCNT=2;MAX_ED=101;MIN_ED=4;NLOD=28.66;TLOD=9.65	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:170,4:0.022:2:2:0.500:0|1:65666828_C_T:5750,108:84:86	0/0:143,12:0.079:4:8:0.667:0|1:65666828_C_T:4794,337:62:81
chr2	65666835	.	T	A	.	alt_allele_in_normal;clustered_events	ECNT=9;HCNT=2;MAX_ED=101;MIN_ED=4;NLOD=27.45;TLOD=9.69	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:176,4:0.022:2:2:0.500:0|1:65666828_C_T:5481,127:86:90	0/0:147,13:0.081:4:9:0.308:0|1:65666828_C_T:4603,414:63:84
chr2	65666905	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=9;HCNT=2;MAX_ED=101;MIN_ED=4;NLOD=6.53;TLOD=14.32	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:321,6:0.021:2:4:0.667:0|1:65666905_C_T:11216,183:175:146	0/0:233,35:0.139:16:19:0.543:0|1:65666905_C_T:8128,1138:92:141
chr2	65666913	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=9;HCNT=2;MAX_ED=101;MIN_ED=4;NLOD=4.73;TLOD=14.32	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:319,5:0.021:2:3:0.400:0|1:65666905_C_T:9900,129:175:144	0/0:230,25:0.124:12:13:0.480:0|1:65666905_C_T:7118,797:87:143
chr2	65666926	.	A	G	.	alt_allele_in_normal;clustered_events	ECNT=9;HCNT=2;MAX_ED=101;MIN_ED=4;NLOD=49.11;TLOD=11.57	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:303,5:0.018:2:3:0.600:0|1:65666905_C_T:10274,170:159:144	0/0:222,6:0.028:3:3:0.500:0|1:65666905_C_T:7504,209:88:134
chr2	65666927	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=9;HCNT=2;MAX_ED=101;MIN_ED=4;NLOD=48.20;TLOD=11.59	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:305,5:0.018:2:3:0.400:0|1:65666905_C_T:10538,148:161:144	0/0:225,6:0.029:3:3:0.500:0|1:65666905_C_T:7751,197:89:136
chr2	65666929	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=9;HCNT=2;MAX_ED=101;MIN_ED=4;NLOD=47.30;TLOD=11.64	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:304,5:0.018:2:3:0.600:0|1:65666905_C_T:9371,152:160:144	0/0:223,5:0.029:3:2:0.400:0|1:65666905_C_T:6930,159:86:137
chr2	68161683	.	A	G	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=15.65;TLOD=4.01	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:54,3:0.040:1:2:0.667:1687,103:31:23	0/0:55,0:0.00:0:0:.:1793,0:35:20
chr2	68395621	.	T	G	.	alt_allele_in_normal;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.44;TLOD=4.99	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:80,21:0.191:10:11:0.476:2051,110:41:39	0/0:62,12:0.179:2:10:0.167:1573,57:36:26
chr2	69338324	rs79296658	C	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=14.65	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,4:0.667:3:1:0.250:72,144:2:0	0/0:7,0:0.00:0:0:.:253,0:3:4
chr2	69788079	.	C	CAA	.	t_lod_fstar	ECNT=2;HCNT=2;MAX_ED=1;MIN_ED=1;NLOD=28.30;TLOD=4.56	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:126,1:0.016:0:1:.:0|1:69788079_C_CAA:4353,37:71:55	0/0:105,0:0.00:0:0:.:0|1:69788079_C_CAA:3593,0:57:48
chr2	69788080	.	TG	T	.	t_lod_fstar	ECNT=2;HCNT=2;MAX_ED=1;MIN_ED=1;NLOD=29.50;TLOD=4.57	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:127,1:0.016:0:1:.:0|1:69788079_C_CAA:4210,32:69:58	0/0:106,0:0.00:0:0:.:0|1:69788079_C_CAA:3495,0:58:48
chr2	70674988	rs59701970	T	A	.	germline_risk;t_lod_fstar	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=5.80	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,2:0.333:0:2:0.00:135,65:2:2	0/0:6,0:0.00:0:0:.:204,0:4:2
chr2	70988739	.	TGA	T	.	alt_allele_in_normal;clustered_events;str_contraction;t_lod_fstar	ECNT=2;HCNT=1;MAX_ED=14;MIN_ED=14;NLOD=10.14;RPA=7,6;RU=GA;STR;TLOD=5.18	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:49,5:0.052:4:1:.:1452,162:30:16	0/0:48,2:0.021:0:2:.:1498,62:24:24
chr2	70988753	.	AGT	A	.	alt_allele_in_normal;clustered_events;str_contraction;t_lod_fstar	ECNT=2;HCNT=1;MAX_ED=14;MIN_ED=14;NLOD=4.58;RPA=8,7;RU=GT;STR;TLOD=4.28	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:52,3:0.056:3:0:.:1677,94:28:24	0/0:43,3:0.065:1:2:.:1402,100:23:20
chr2	71520140	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=34.01;TLOD=4.76	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:149,5:0.022:2:3:0.400:5124,162:89:60	0/0:123,0:0.00:0:0:.:4192,0:72:51
chr2	71574289	.	TCCG	T	.	alt_allele_in_normal;str_contraction;t_lod_fstar	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=51.33;RPA=4,3;RU=CCG;STR;TLOD=4.12	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:240,4:9.709e-03:4:0:.:6685,119:120:120	0/0:240,2:9.950e-03:0:2:.:6672,51:124:116
chr2	71589831	.	ATG	A	.	alt_allele_in_normal;germline_risk;str_contraction	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=0.681;RPA=7,6;RU=TG;STR;TLOD=6.62	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:16,3:0.158:2:1:.:504,98:10:6	0/0:13,1:0.071:1:0:.:420,33:11:2
chr2	71665194	.	G	C	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=2;HCNT=2;MAX_ED=5;MIN_ED=5;NLOD=21.54;TLOD=5.95	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:120,24:0.095:13:11:0.542:0|1:71665194_G_C:3943,129:65:55	0/0:132,13:0.096:5:8:0.385:0|1:71665194_G_C:4451,46:61:71
chr2	71665199	.	T	C	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=2;HCNT=2;MAX_ED=5;MIN_ED=5;NLOD=27.28;TLOD=5.39	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:126,17:0.078:9:8:0.529:0|1:71665194_G_C:3907,212:69:57	0/0:137,8:0.063:3:5:0.375:0|1:71665194_G_C:4414,63:64:73
chr2	73225880	.	AGAG	A	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=5;MAX_ED=.;MIN_ED=.;NLOD=23.05;RPA=5,4;RU=GAG;STR;TLOD=4.93	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:81,2:0.025:2:0:.:2731,64:37:44	0/0:77,0:0.00:0:0:.:2549,0:40:37
chr2	73950509	.	TTC	T	.	alt_allele_in_normal;str_contraction	ECNT=1;HCNT=6;MAX_ED=.;MIN_ED=.;NLOD=23.01;RPA=7,6;RU=TC;STR;TLOD=10.19	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:119,6:0.051:4:2:.:3966,195:73:46	0/0:115,3:0.027:3:0:.:3805,100:58:57
chr2	74550153	.	AGT	A	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=42.66;RPA=6,5;RU=GT;STR;TLOD=4.74	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:191,3:0.018:2:1:.:5738,92:103:88	0/0:167,0:0.00:0:0:.:5135,0:88:79
chr2	81198858	.	C	T	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.01;TLOD=5.33	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:12,2:0.154:1:1:0.500:410,68:8:4	0/0:10,0:0.00:0:0:.:330,0:7:3
chr2	85844741	.	G	A	.	germline_risk;t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=5.89	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:3,2:0.400:1:1:0.500:97,64:1:2	0/0:6,0:0.00:0:0:.:210,0:2:4
chr2	86753433	.	GTTCT	G	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=17.12;RPA=4,3;RU=TTCT;STR;TLOD=5.07	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:71,3:0.029:0:3:.:2433,100:40:31	0/0:58,0:0.00:0:0:.:1992,0:33:25
chr2	88526248	rs34891302	C	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=19.81	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,6:0.857:2:4:0.667:33,182:1:0	0/0:5,0:0.00:0:0:.:158,0:4:1
chr2	89040662	.	G	A	.	alt_allele_in_normal	ECNT=1;HCNT=8;MAX_ED=.;MIN_ED=.;NLOD=129.84;TLOD=46.13	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:515,26:0.048:11:15:0.423:17707,889:265:250	0/0:515,2:4.367e-03:1:1:0.500:17833,67:265:250
chr2	89100147	.	T	C	.	alt_allele_in_normal	ECNT=1;HCNT=16;MAX_ED=.;MIN_ED=.;NLOD=24.83;TLOD=12.75	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:149,8:0.051:2:6:0.250:4783,279:76:73	0/0:363,8:0.024:5:3:0.625:11891,287:160:203
chr2	90154499	.	T	A	.	alt_allele_in_normal	ECNT=1;HCNT=8;MAX_ED=.;MIN_ED=.;NLOD=15.17;TLOD=8.15	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:48,5:0.096:5:0:1.00:1589,163:21:27	0/0:199,7:0.037:4:3:0.571:6687,233:85:114
chr2	91589711	.	GGCT	G	.	str_contraction	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=5.09;RPA=5,4;RU=GCT;STR;TLOD=10.95	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:12,5:0.286:4:1:.:346,149:7:5	0/0:27,0:0.00:0:0:.:823,0:13:14
chr2	91755807	.	T	C	.	t_lod_fstar	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=10.83;TLOD=4.03	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:24,2:0.080:1:1:0.500:814,66:14:10	0/0:39,0:0.00:0:0:.:1303,0:17:22
chr2	91879598	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=3;HCNT=1;MAX_ED=10;MIN_ED=6;NLOD=2.41;TLOD=7.05	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:6,2:0.250:1:1:0.500:0|1:91879598_C_T:203,69:2:4	0/0:23,12:0.303:3:9:0.750:0|1:91879598_C_T:731,402:8:15
chr2	91879604	.	T	C	.	alt_allele_in_normal;clustered_events	ECNT=3;HCNT=1;MAX_ED=10;MIN_ED=6;NLOD=2.41;TLOD=9.74	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:8,3:0.333:2:1:0.667:0|1:91879598_C_T:225,71:4:4	0/0:25,12:0.303:3:9:0.250:0|1:91879598_C_T:708,420:10:15
chr2	91879608	.	A	T	.	alt_allele_in_normal;clustered_events	ECNT=3;HCNT=1;MAX_ED=10;MIN_ED=6;NLOD=2.41;TLOD=9.74	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:8,4:0.333:2:2:0.500:0|1:91879598_C_T:234,97:4:4	0/0:24,12:0.313:3:9:0.750:0|1:91879598_C_T:732,410:10:14
chr2	91930419	.	A	T	.	alt_allele_in_normal;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=30.29;TLOD=5.35	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:121,3:0.027:1:2:0.667:4026,99:51:70	0/0:132,2:0.018:1:1:0.500:4424,65:45:87
chr2	91962197	.	G	A	.	alt_allele_in_normal;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.75;TLOD=4.83	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:20,3:0.136:1:2:0.333:560,96:8:12	0/0:28,1:0.036:1:0:1.00:810,32:16:12
chr2	94848206	.	T	A	.	alt_allele_in_normal	ECNT=1;HCNT=12;MAX_ED=.;MIN_ED=.;NLOD=24.68;TLOD=27.54	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:185,19:0.095:12:7:0.632:5715,601:80:105	0/0:230,23:0.092:8:15:0.348:7149,769:94:136
chr2	94849284	.	G	A	.	alt_allele_in_normal	ECNT=1;HCNT=20;MAX_ED=.;MIN_ED=.;NLOD=31.66;TLOD=6.70	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:165,5:0.032:1:4:0.200:5409,159:74:91	0/0:153,4:0.028:1:3:0.250:5100,129:81:72
chr2	94853615	.	G	T	.	alt_allele_in_normal;t_lod_fstar	ECNT=1;HCNT=12;MAX_ED=.;MIN_ED=.;NLOD=26.41;TLOD=4.03	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:290,5:0.020:2:3:0.400:10079,153:132:158	0/0:210,14:0.072:7:7:0.500:7343,467:92:118
chr2	95908851	.	A	T	.	germline_risk;t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=5.55	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,2:0.500:1:1:0.500:68,64:1:1	0/0:5,0:0.00:0:0:.:166,0:2:3
chr2	96601907	rs62154845	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=8.04	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:6,3:0.333:1:2:0.333:207,91:4:2	0/0:4,0:0.00:0:0:.:135,0:0:4
chr2	96825128	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=15.05;TLOD=5.32	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:71,3:0.045:1:2:0.333:2479,92:34:37	0/0:51,0:0.00:0:0:.:1782,0:27:24
chr2	98563655	.	C	A	.	t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=11.74;TLOD=4.14	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:32,2:0.065:0:2:1.00:1036,64:19:13	0/0:39,0:0.00:0:0:.:1350,0:16:23
chr2	101262416	.	T	TTC	.	germline_risk;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.11;RPA=6,7;RU=TC;STR;TLOD=4.28	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:7,2:0.222:1:1:.:233,66:1:6	0/0:7,0:0.00:0:0:.:234,0:4:3
chr2	102452250	.	CTG	C	.	alt_allele_in_normal;str_contraction;t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=6.23;RPA=6,5;RU=TG;STR;TLOD=4.15	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:27,2:0.069:1:1:.:945,72:12:15	0/0:32,1:0.030:1:0:.:1089,36:16:16
chr2	103527927	rs17028931	C	T	.	germline_risk;t_lod_fstar	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=4.48	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:8,2:0.200:1:1:0.500:263,57:3:5	0/0:4,0:0.00:0:0:.:140,0:2:2
chr2	106425156	.	A	C	.	alt_allele_in_normal	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=35.92;TLOD=9.33	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:318,9:0.030:6:3:0.333:9956,301:157:161	0/0:341,28:0.079:16:12:0.429:10691,939:176:165
chr2	108676523	rs62151380	T	C	.	germline_risk;t_lod_fstar	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=5.12	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,2:0.667:1:1:0.500:32,68:1:0	0/0:4,0:0.00:0:0:.:135,0:0:4
chr2	108751415	.	A	G	.	alt_allele_in_normal	ECNT=1;HCNT=8;MAX_ED=.;MIN_ED=.;NLOD=15.68;TLOD=6.61	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:174,8:0.049:1:7:0.875:5352,263:92:82	0/0:208,20:0.086:5:15:0.750:6393,624:98:110
chr2	108767711	.	C	G	.	alt_allele_in_normal	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=27.36;TLOD=15.38	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:557,18:0.034:10:8:0.444:19322,616:266:291	0/0:550,52:0.090:22:30:0.577:18999,1679:256:294
chr2	109436792	rs7369523	C	T	.	germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=18.38	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:5,6:0.545:1:5:0.833:180,191:4:1	0/0:5,0:0.00:0:0:.:179,0:3:2
chr2	113462451	.	T	C	.	alt_allele_in_normal	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=7.46;TLOD=10.53	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:158,7:0.051:3:4:0.429:5401,246:83:75	0/0:106,10:0.095:7:3:0.700:3624,345:54:52
chr2	113668606	.	C	T	.	alt_allele_in_normal;t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=23.38;TLOD=6.18	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:160,5:0.034:3:2:0.400:5530,150:72:88	0/0:162,12:0.071:6:6:0.500:5669,377:66:96
chr2	119629882	.	A	G	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=16.81;TLOD=4.23	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:63,2:0.036:1:1:0.500:2017,70:32:31	0/0:64,0:0.00:0:0:.:2099,0:30:34
chr2	127576838	rs12999486	C	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=7.12	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,2:0.667:0:2:1.00:36,70:1:0	0/0:4,0:0.00:0:0:.:122,0:2:2
chr2	127590262	.	GGGA	G	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=7.46;RPA=4,3;RU=GGA;STR;TLOD=5.55	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:42,2:0.050:2:0:.:1397,68:20:22	0/0:28,0:0.00:0:0:.:963,0:9:19
chr2	130120179	.	T	C	.	alt_allele_in_normal	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=48.52;TLOD=42.37	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:273,27:0.093:18:9:0.667:8904,890:134:139	0/0:275,30:0.099:16:14:0.533:8941,979:125:150
chr2	130144878	.	T	C	.	t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=9.93;TLOD=4.11	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:50,4:0.050:2:2:0.500:1611,129:33:17	0/0:55,0:0.00:0:0:.:1735,0:32:23
chr2	130268653	.	A	G	.	germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=6.39	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:3,2:0.400:0:2:1.00:98,69:3:0	0/0:4,0:0.00:0:0:.:126,0:1:3
chr2	130345820	.	T	C	.	t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=29.79;TLOD=4.05	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:97,2:0.021:2:0:1.00:3043,73:56:41	0/0:107,0:0.00:0:0:.:3349,0:47:60
chr2	131223730	.	A	G	.	alt_allele_in_normal;germline_risk	ECNT=2;HCNT=1;MAX_ED=1;MIN_ED=1;NLOD=1.45;TLOD=15.27	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:47,4:0.093:2:2:0.500:0|1:131223730_A_G:1508,112:20:27	0/0:88,11:0.105:5:6:0.545:0|1:131223730_A_G:2839,395:44:44
chr2	131223731	.	T	A	.	alt_allele_in_normal;germline_risk	ECNT=2;HCNT=1;MAX_ED=1;MIN_ED=1;NLOD=1.45;TLOD=15.22	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:47,5:0.091:3:2:0.600:0|1:131223730_A_G:1517,127:21:26	0/0:88,11:0.105:5:6:0.455:0|1:131223730_A_G:2871,346:44:44
chr2	131264242	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=4;HCNT=12;MAX_ED=64;MIN_ED=45;NLOD=14.51;TLOD=9.06	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:332,14:0.033:5:9:0.357:10284,438:179:153	0/0:388,33:0.075:17:16:0.515:12077,1093:205:183
chr2	131264287	.	T	C	.	alt_allele_in_normal;clustered_events	ECNT=4;HCNT=12;MAX_ED=64;MIN_ED=45;NLOD=6.26;TLOD=14.50	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:165,8:0.043:3:5:0.375:0|1:131264287_T_C:5218,232:88:77	0/0:285,26:0.080:10:16:0.385:0|1:131264287_T_C:9031,732:137:148
chr2	131264305	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=4;HCNT=12;MAX_ED=64;MIN_ED=45;NLOD=26.42;TLOD=10.26	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:122,4:0.031:0:4:1.00:0|1:131264287_T_C:3451,121:71:51	0/0:240,8:0.042:2:6:0.750:0|1:131264287_T_C:7374,241:113:127
chr2	131264306	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=4;HCNT=12;MAX_ED=64;MIN_ED=45;NLOD=33.44;TLOD=10.30	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:118,4:0.032:0:4:0.00:0|1:131264287_T_C:3829,129:68:50	0/0:240,8:0.032:2:6:0.250:0|1:131264287_T_C:7373,258:109:131
chr2	131626564	.	A	G	.	alt_allele_in_normal;t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=61.40;TLOD=6.08	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:333,6:0.020:2:4:0.667:10388,205:146:187	0/0:327,18:0.051:8:10:0.556:10388,620:156:171
chr2	132261610	.	C	T	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=5;HCNT=16;MAX_ED=139;MIN_ED=90;NLOD=8.86;TLOD=5.40	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:25,3:0.107:0:3:1.00:854,89:13:12	0/0:46,4:0.085:2:2:0.500:1588,112:18:28
chr2	132261700	.	A	G	.	clustered_events;multi_event_alt_allele_in_normal;t_lod_fstar	ECNT=5;HCNT=16;MAX_ED=139;MIN_ED=90;NLOD=6.34;TLOD=5.65	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:38,2:0.056:0:2:1.00:0|1:132261700_A_G:1246,72:21:17	0/0:38,1:0.028:0:1:1.00:0|1:132261700_A_G:1244,35:14:24
chr2	132261705	.	C	T	.	clustered_events;multi_event_alt_allele_in_normal;t_lod_fstar	ECNT=5;HCNT=16;MAX_ED=139;MIN_ED=90;NLOD=6.64;TLOD=5.65	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:39,2:0.056:0:2:1.00:0|1:132261700_A_G:1399,61:21:18	0/0:41,1:0.027:0:1:1.00:0|1:132261700_A_G:1460,32:15:26
chr2	132261743	.	G	A	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=5;HCNT=16;MAX_ED=139;MIN_ED=90;NLOD=8.14;TLOD=5.72	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:34,2:0.061:0:2:0.00:0|1:132261743_G_A:1171,61:17:17	0/0:42,2:0.047:1:1:0.500:0|1:132261743_G_A:1441,62:17:25
chr2	132261749	.	G	A	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=5;HCNT=16;MAX_ED=139;MIN_ED=90;NLOD=8.14;TLOD=5.87	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:29,2:0.071:0:2:0.00:0|1:132261743_G_A:1018,58:15:14	0/0:40,2:0.047:1:1:0.500:0|1:132261743_G_A:1378,63:16:24
chr2	132262653	.	C	T	.	alt_allele_in_normal	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=16.77;TLOD=10.94	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:139,7:0.056:1:6:0.857:4934,238:66:73	0/0:155,8:0.055:3:5:0.625:5499,270:79:76
chr2	134867829	.	CTA	C	.	germline_risk;str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;RPA=8,7;RU=TA;STR;TLOD=4.86	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,2:0.333:2:0:.:140,65:2:2	0/0:5,0:0.00:0:0:.:144,0:4:1
chr2	135651897	.	GCCA	G	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=20.27;RPA=4,3;RU=CCA;STR;TLOD=4.82	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:93,2:0.022:1:1:.:2933,56:43:50	0/0:83,1:0.012:0:1:.:2629,28:36:47
chr2	140370685	.	GCA	G	.	alt_allele_in_normal;str_contraction	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=62.82;RPA=6,5;RU=CA;STR;TLOD=7.66	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:245,6:0.022:4:2:.:8371,208:132:113	0/0:253,2:8.547e-03:1:1:.:8614,70:124:129
chr2	147918575	.	A	C	.	alt_allele_in_normal;germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.06;TLOD=6.61	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:29,13:0.316:10:3:0.231:775,152:16:13	0/0:29,8:0.235:6:2:0.250:769,61:12:17
chr2	151435361	.	A	G	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=7.82;TLOD=4.83	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:26,2:0.071:2:0:0.00:841,70:21:5	0/0:26,0:0.00:0:0:.:827,0:14:12
chr2	151473995	.	T	C	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=22.52;TLOD=4.14	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:81,3:0.026:3:0:1.00:2550,107:51:30	0/0:88,0:0.00:0:0:.:2798,0:44:44
chr2	163734901	.	A	G	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=12.34;TLOD=4.09	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:70,2:0.031:0:2:1.00:2161,70:35:35	0/0:44,0:0.00:0:0:.:1351,0:20:24
chr2	165883946	.	T	C	.	t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=22.27;TLOD=4.03	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:110,2:0.021:1:1:0.500:3646,73:59:51	0/0:82,0:0.00:0:0:.:2766,0:49:33
chr2	166288608	.	G	C	.	t_lod_fstar	ECNT=1;HCNT=3;MAX_ED=.;MIN_ED=.;NLOD=19.57;TLOD=4.14	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:66,1:0.032:0:1:0.00:2317,28:30:36	0/0:67,0:0.00:0:0:.:2353,0:31:36
chr2	169157642	.	AG	A	.	germline_risk;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;RPA=3,2;RU=G;STR;TLOD=4.66	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:10,2:0.167:1:1:.:330,69:7:3	0/0:6,0:0.00:0:0:.:206,0:2:4
chr2	169196901	.	A	G	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=17.45;TLOD=4.00	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:83,2:0.028:0:2:1.00:2589,70:45:38	0/0:67,0:0.00:0:0:.:2078,0:25:42
chr2	172088135	.	T	C	.	t_lod_fstar	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=46.85;TLOD=4.35	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:165,3:0.018:1:2:0.333:5350,94:71:94	0/0:158,0:0.00:0:0:.:5083,0:81:77
chr2	173221557	rs74417392	C	T	.	germline_risk;t_lod_fstar	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=6.05	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,2:0.500:0:2:1.00:70,63:1:1	0/0:5,0:0.00:0:0:.:182,0:2:3
chr2	176108974	.	C	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=50.20;TLOD=4.20	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:192,3:0.017:2:1:0.333:5949,94:90:102	0/0:187,0:0.00:0:0:.:5888,0:84:103
chr2	177997449	.	C	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=14.45;TLOD=4.33	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:46,2:0.051:2:0:0.00:1623,68:17:29	0/0:54,0:0.00:0:0:.:1881,0:29:25
chr2	178598823	.	C	T	.	t_lod_fstar	ECNT=1;HCNT=8;MAX_ED=.;MIN_ED=.;NLOD=55.03;TLOD=4.02	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:205,4:0.016:2:2:0.500:6993,126:115:90	0/0:198,0:0.00:0:0:.:6789,0:95:103
chr2	178720929	.	G	T	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=16.25;TLOD=4.19	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:39,2:0.049:2:0:1.00:1379,67:23:16	0/0:61,0:0.00:0:0:.:2201,0:32:29
chr2	179399732	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=27.30;TLOD=6.17	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:109,3:0.032:0:3:0.00:3813,105:58:51	0/0:105,0:0.00:0:0:.:3705,0:55:50
chr2	179973834	.	C	G	.	t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=9.03;TLOD=4.46	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:25,2:0.074:1:1:0.500:879,66:12:13	0/0:30,0:0.00:0:0:.:1045,0:15:15
chr2	183151590	.	T	C	.	t_lod_fstar	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=15.65;TLOD=4.07	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:66,2:0.030:2:0:1.00:2142,70:38:28	0/0:54,0:0.00:0:0:.:1765,0:34:20
chr2	190297119	rs2582743	C	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=6.45	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,2:0.500:1:1:0.500:56,67:1:1	0/0:5,0:0.00:0:0:.:138,0:1:4
chr2	190986798	.	T	C	.	t_lod_fstar	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=60.09;TLOD=4.47	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:185,2:0.017:0:2:0.00:5898,68:90:95	0/0:206,0:0.00:0:0:.:6541,0:94:112
chr2	197013753	.	A	C	.	alt_allele_in_normal;t_lod_fstar	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=3.14;TLOD=4.40	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:47,22:0.319:13:9:0.409:1193,80:18:29	0/0:58,20:0.256:9:11:0.550:1412,67:23:35
chr2	198088821	.	T	G	.	alt_allele_in_normal	ECNT=1;HCNT=16;MAX_ED=.;MIN_ED=.;NLOD=20.56;TLOD=14.92	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:431,118:0.215:57:61:0.483:11530,583:280:151	0/0:348,102:0.241:46:56:0.451:9175,431:218:130
chr2	202765584	.	G	T	.	t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=44.84;TLOD=4.96	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:166,4:0.020:4:0:1.00:5695,133:80:86	0/0:166,0:0.00:0:0:.:5712,0:88:78
chr2	206308753	.	G	T	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=11.14;TLOD=4.28	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:40,2:0.049:2:0:1.00:1392,68:21:19	0/0:38,0:0.00:0:0:.:1351,0:23:15
chr2	210608506	.	C	T	.	PASS	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=32.44;TLOD=13.39	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:87,7:0.069:3:4:0.571:2652,234:48:39	0/0:116,0:0.00:0:0:.:3509,0:58:58
chr2	215422201	.	C	T	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=48.39;TLOD=4.00	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:189,3:0.018:2:1:0.333:5835,91:115:74	0/0:174,0:0.00:0:0:.:5206,0:88:86
chr2	217848163	.	GGCT	G	.	str_contraction	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=7.10;RPA=9,8;RU=GCT;STR;TLOD=11.61	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:26,5:0.156:1:4:.:868,174:15:11	0/0:24,0:0.00:0:0:.:781,0:14:10
chr2	218679355	.	T	C	.	t_lod_fstar	ECNT=1;HCNT=24;MAX_ED=.;MIN_ED=.;NLOD=9.63;TLOD=4.15	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:36,2:0.053:2:0:1.00:1151,66:19:17	0/0:32,0:0.00:0:0:.:1036,0:16:16
chr2	219027642	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=42.47;TLOD=4.04	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:207,4:0.017:2:2:0.500:7239,125:108:99	0/0:167,1:6.536e-03:0:1:0.00:5789,31:80:87
chr2	219027994	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=47.62;TLOD=4.36	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:222,3:0.016:1:2:0.333:7463,96:111:111	0/0:187,0:0.00:0:0:.:6190,0:96:91
chr2	219477961	.	C	T	.	t_lod_fstar	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=51.91;TLOD=4.11	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:259,4:0.013:4:0:0.00:7853,127:133:126	0/0:187,0:0.00:0:0:.:5528,0:101:86
chr2	219616052	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=12.34;TLOD=4.25	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:35,2:0.059:1:1:0.500:1210,66:23:12	0/0:48,0:0.00:0:0:.:1639,0:32:16
chr2	222293705	.	ACT	A	.	alt_allele_in_normal;str_contraction	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=26.35;RPA=7,6;RU=CT;STR;TLOD=12.54	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:225,13:0.025:5:5:.:6729,304:122:103	0/0:193,11:0.021:5:4:.:5736,273:98:95
chr2	224001460	rs3795877	A	G	.	germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=11.23	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:0,3:1.00:2:1:0.333:0,98:0:0	0/0:4,0:0.00:0:0:.:126,0:2:2
chr2	227007437	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=117.87;TLOD=4.29	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:408,5:0.010:1:4:0.200:13234,153:235:173	0/0:424,0:0.00:0:0:.:13835,0:256:168
chr2	227248563	.	ACT	A	.	alt_allele_in_normal;germline_risk;str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.20;RPA=7,6;RU=CT;STR;TLOD=4.04	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:21,2:0.087:2:0:.:593,56:11:10	0/0:18,1:0.053:0:1:.:538,31:8:10
chr2	229388184	.	G	T	.	t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=17.40;TLOD=4.01	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:62,2:0.032:2:0:1.00:1737,69:23:39	0/0:58,0:0.00:0:0:.:1604,0:33:25
chr2	229797635	.	A	G	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=7.52;TLOD=5.14	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:42,1:0.045:1:0:0.00:1350,34:22:20	0/0:26,0:0.00:0:0:.:852,0:11:15
chr2	230311325	.	G	A	.	PASS	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=10.49;TLOD=36.94	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:55,17:0.236:11:6:0.647:1820,556:30:25	0/0:41,1:0.024:0:1:0.00:1341,32:21:20
chr2	230494652	rs72985712	T	C	.	germline_risk;t_lod_fstar	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=5.83	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:3,2:0.400:0:2:0.00:94,65:1:2	0/0:4,0:0.00:0:0:.:130,0:2:2
chr2	230573935	.	T	C	.	germline_risk	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=12.24	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:10,5:0.333:2:3:0.400:319,140:6:4	0/0:4,0:0.00:0:0:.:127,0:1:3
chr2	230873453	rs2289235	G	A	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.58;TLOD=79.65	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:32,30:0.456:11:19:0.367:1053,975:17:15	0/0:34,3:0.083:2:1:0.667:1143,71:12:22
chr2	231226766	rs3731776	C	T	.	PASS	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.72;TLOD=129.23	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:31,45:0.597:30:15:0.333:1118,1468:13:18	0/0:23,0:0.00:0:0:.:815,0:12:11
chr2	231256070	rs41265105	C	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=12.43	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:3,5:0.571:2:3:0.600:106,159:3:0	0/0:5,0:0.00:0:0:.:175,0:3:2
chr2	231462562	rs115288824	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=11.02	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:12,5:0.308:3:2:0.600:403,158:7:5	0/0:8,0:0.00:0:0:.:281,0:3:5
chr2	231462996	rs6437019	T	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=7.45	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:0,2:1.00:2:0:1.00:0,65:0:0	0/0:5,0:0.00:0:0:.:168,0:3:2
chr2	231711721	rs2070936	T	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=19.64	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,6:0.600:3:3:0.500:129,197:2:2	0/0:5,0:0.00:0:0:.:163,0:4:1
chr2	231712809	rs115998635	C	T	.	germline_risk;t_lod_fstar	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=5.48	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:9,3:0.200:2:1:0.333:281,94:4:5	0/0:6,0:0.00:0:0:.:190,0:2:4
chr2	232024146	rs896990	T	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=29.74	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,8:0.800:4:4:0.500:66,281:2:0	0/0:4,0:0.00:0:0:.:127,0:2:2
chr2	232163360	rs3116181	A	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=19.95	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:6,6:0.500:6:0:0.00:186,207:4:2	0/0:5,0:0.00:0:0:.:168,0:2:3
chr2	232334636	.	T	C	.	germline_risk;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=5.39	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:26,3:0.107:0:3:0.00:789,101:11:15	0/0:7,0:0.00:0:0:.:221,0:5:2
chr2	232378909	.	AAC	A	.	alt_allele_in_normal;str_contraction	ECNT=1;HCNT=6;MAX_ED=.;MIN_ED=.;NLOD=20.90;RPA=5,4;RU=AC;STR;TLOD=9.10	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:206,6:0.026:5:1:.:6504,215:96:110	0/0:96,2:0.021:2:0:.:3021,67:42:54
chr2	232380151	.	G	C	.	alt_allele_in_normal;clustered_events	ECNT=2;HCNT=30;MAX_ED=76;MIN_ED=76;NLOD=3.86;TLOD=42.31	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:133,20:0.139:9:11:0.450:4417,641:73:60	0/0:78,5:0.066:3:2:0.600:2589,169:30:48
chr2	232380227	.	A	G	.	alt_allele_in_normal;clustered_events	ECNT=2;HCNT=12;MAX_ED=76;MIN_ED=76;NLOD=25.29;TLOD=39.57	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:195,17:0.083:9:8:0.471:6295,575:107:88	0/0:117,3:0.024:0:3:1.00:3819,106:58:59
chr2	232407089	.	C	G	.	alt_allele_in_normal;t_lod_fstar	ECNT=1;HCNT=6;MAX_ED=.;MIN_ED=.;NLOD=23.74;TLOD=4.12	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:204,3:0.015:1:2:0.667:6883,103:96:108	0/0:105,6:0.058:5:1:0.167:3489,187:56:49
chr2	232408397	.	A	G	.	alt_allele_in_normal	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=18.57;TLOD=19.73	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:101,11:0.110:3:8:0.727:3109,366:72:29	0/0:105,3:0.030:1:2:0.667:3143,103:53:52
chr2	232408581	.	C	T	.	PASS	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=21.46;TLOD=8.30	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:97,5:0.053:3:2:0.400:3285,161:51:46	0/0:101,1:0.011:1:0:0.00:3443,33:47:54
chr2	232418305	rs62192181	A	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=12.09	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:6,5:0.400:4:1:0.200:196,163:2:4	0/0:4,0:0.00:0:0:.:135,0:1:3
chr2	232445304	rs67171963	C	T	.	germline_risk;t_lod_fstar	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=0.602;TLOD=6.05	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,2:0.500:1:1:0.500:67,63:0:2	0/0:2,0:0.00:0:0:.:66,0:0:2
chr2	232529058	.	GCA	G	.	germline_risk;str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.49;RPA=7,6;RU=CA;STR;TLOD=4.64	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:8,2:0.200:1:1:.:278,65:4:4	0/0:5,0:0.00:0:0:.:169,0:1:4
chr2	232681652	.	GGGA	G	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=17.11;RPA=4,3;RU=GGA;STR;TLOD=4.73	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:103,2:0.020:2:0:.:3415,69:54:49	0/0:58,0:0.00:0:0:.:1942,0:32:26
chr2	232888222	.	GCA	G	.	germline_risk;str_contraction	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;RPA=7,6;RU=CA;STR;TLOD=7.50	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:6,3:0.333:1:2:.:204,105:3:3	0/0:5,0:0.00:0:0:.:173,0:4:1
chr2	233450729	rs72980361	A	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=14.07	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:11,5:0.313:1:4:0.800:351,160:9:2	0/0:4,0:0.00:0:0:.:132,0:2:2
chr2	235212151	.	C	CT	.	germline_risk;t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=0.902;RPA=3,4;RU=T;STR;TLOD=5.25	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:3,2:0.500:1:1:.:108,72:3:0	0/0:4,0:0.00:0:0:.:143,0:2:2
chr2	236196407	rs55818776	C	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=9.90	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,3:0.750:2:1:0.333:28,95:0:1	0/0:5,0:0.00:0:0:.:130,0:2:3
chr2	236908695	rs43168	G	C	.	clustered_events;germline_risk	DB;ECNT=2;HCNT=2;MAX_ED=26;MIN_ED=26;NLOD=1.50;TLOD=8.42	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:3,3:0.500:2:1:0.667:93,88:1:2	0/0:6,0:0.00:0:0:.:197,0:3:3
chr2	236908721	rs42247	C	T	.	clustered_events;germline_risk	DB;ECNT=2;HCNT=2;MAX_ED=26;MIN_ED=26;NLOD=1.20;TLOD=12.75	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,4:0.667:3:1:0.250:58,125:1:1	0/0:5,0:0.00:0:0:.:183,0:2:3
chr2	237345287	rs2256485	A	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.91;TLOD=35.91	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:13,11:0.458:4:7:0.636:431,383:4:9	0/0:13,0:0.00:0:0:.:439,0:8:5
chr2	237358415	rs4663731	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.11;TLOD=20.76	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:9,7:0.438:6:1:0.857:261,222:4:5	0/0:17,0:0.00:0:0:.:477,0:7:10
chr2	237748227	rs2304430	T	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=15.81	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:0,4:1.00:1:3:0.250:0,139:0:0	0/0:6,0:0.00:0:0:.:179,0:3:3
chr2	237753189	rs733579	T	C	.	clustered_events;germline_risk	DB;ECNT=2;HCNT=2;MAX_ED=38;MIN_ED=38;NLOD=0.903;TLOD=19.85	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:6,6:0.500:4:2:0.667:195,206:4:2	0/0:3,0:0.00:0:0:.:99,0:1:2
chr2	237753227	.	GT	G	.	clustered_events;germline_risk	ECNT=2;HCNT=2;MAX_ED=38;MIN_ED=38;NLOD=1.71;RPA=9,8;RU=T;STR;TLOD=11.16	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:7,8:0.533:4:4:.:240,264:6:1	0/0:6,0:0.00:0:0:.:209,0:3:3
chr2	237820155	.	CCTAT	C	.	germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=15.59	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,4:0.500:4:0:.:138,144:2:2	0/0:4,0:0.00:0:0:.:136,0:2:2
chr2	238131255	rs10182906	G	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=7.63	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:8,3:0.375:2:1:0.667:247,85:4:4	0/0:5,0:0.00:0:0:.:138,0:3:2
chr2	238173399	rs7585597	T	C	.	germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=30.35	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:8,9:0.529:4:5:0.444:261,313:2:6	0/0:5,0:0.00:0:0:.:164,0:2:3
chr2	238257165	rs60242091	C	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.602;TLOD=19.41	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:12,7:0.368:5:2:0.286:413,215:8:4	0/0:2,0:0.00:0:0:.:70,0:2:0
chr2	240596350	.	T	G	.	alt_allele_in_normal;t_lod_fstar	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=8.38;TLOD=5.30	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:77,31:0.235:20:11:0.645:2316,133:39:38	0/0:85,19:0.209:13:6:0.684:2509,56:43:42
chr2	241562323	.	C	G	.	t_lod_fstar	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=17.67;TLOD=4.37	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:78,2:0.027:0:2:1.00:2738,74:49:29	0/0:66,0:0.00:0:0:.:2244,0:37:29
chr3	1905640	.	T	C	.	clustered_events;germline_risk;t_lod_fstar	ECNT=2;HCNT=2;MAX_ED=24;MIN_ED=24;NLOD=2.11;TLOD=4.54	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:11,2:0.154:2:0:1.00:329,60:6:5	0/0:7,0:0.00:0:0:.:223,0:5:2
chr3	1905664	rs9310583	A	G	.	clustered_events;germline_risk	DB;ECNT=2;HCNT=2;MAX_ED=24;MIN_ED=24;NLOD=2.41;TLOD=32.22	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:14,10:0.435:6:4:0.400:458,346:8:6	0/0:9,0:0.00:0:0:.:304,0:6:3
chr3	3034600	rs6765545	G	C	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.64;TLOD=43.92	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:25,14:0.378:8:6:0.571:897,479:12:13	0/0:20,1:0.053:1:0:1.00:732,36:12:8
chr3	3053808	.	T	G	.	alt_allele_in_normal	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.30;TLOD=7.10	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:46,21:0.308:8:13:0.381:1182,166:26:20	0/0:24,6:0.214:2:4:0.333:668,23:13:11
chr3	3146332	rs3762760	A	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=20.47	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:7,6:0.462:3:3:0.500:226,215:3:4	0/0:5,0:0.00:0:0:.:172,0:3:2
chr3	3146678	rs1672772	A	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.71;TLOD=49.77	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:15,15:0.500:7:8:0.533:498,522:8:7	0/0:9,0:0.00:0:0:.:304,0:3:6
chr3	5082903	.	G	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=6.52	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,3:0.667:3:0:1.00:34,95:0:1	0/0:4,0:0.00:0:0:.:140,0:2:2
chr3	8548534	.	C	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=8.43;TLOD=4.34	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:42,2:0.047:2:0:0.00:1413,69:19:23	0/0:29,0:0.00:0:0:.:994,0:17:12
chr3	8626049	rs355057	C	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=31.26	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:6,10:0.625:6:4:0.400:194,311:3:3	0/0:7,0:0.00:0:0:.:239,0:4:3
chr3	9058430	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=12;MAX_ED=.;MIN_ED=.;NLOD=20.11;TLOD=4.81	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:165,3:0.019:2:1:0.667:5200,98:87:78	0/0:80,0:0.00:0:0:.:2524,0:40:40
chr3	9718599	.	C	T	.	t_lod_fstar	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=28.59;TLOD=4.90	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:159,3:0.021:1:2:0.667:5333,98:91:68	0/0:104,0:0.00:0:0:.:3574,0:55:49
chr3	10064580	.	C	T	.	alt_allele_in_normal;germline_risk;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.07;TLOD=4.35	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:36,3:0.077:1:2:0.667:1220,102:23:13	0/0:28,2:0.067:1:1:0.500:972,67:17:11
chr3	10064848	.	C	T	.	alt_allele_in_normal;t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=23.45;TLOD=5.14	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:176,4:0.027:3:1:0.250:5413,120:78:98	0/0:113,3:0.032:1:2:0.667:3446,99:60:53
chr3	10238735	.	T	A	.	PASS	ECNT=1;HCNT=3;MAX_ED=.;MIN_ED=.;NLOD=14.88;TLOD=27.94	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:121,14:0.107:8:6:0.571:3927,434:73:48	0/0:71,1:0.016:0:1:0.00:2370,33:34:37
chr3	12609136	.	CTA	C	.	str_contraction	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.01;RPA=7,6;RU=TA;STR;TLOD=9.36	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:20,4:0.167:2:2:.:677,140:13:7	0/0:10,0:0.00:0:0:.:316,0:7:3
chr3	12913368	rs2600322	A	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=17.37	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:5,7:0.545:4:3:0.429:164,207:3:2	0/0:4,0:0.00:0:0:.:130,0:2:2
chr3	12915031	rs2255964	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=27.54	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,9:0.800:5:4:0.556:56,292:1:1	0/0:4,0:0.00:0:0:.:113,0:1:3
chr3	12935363	rs2600206	T	C	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.74;TLOD=45.58	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:15,14:0.483:8:6:0.571:453,477:7:8	0/0:18,1:0.053:0:1:0.00:565,35:7:11
chr3	13353432	rs2280086	G	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=20.16	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:8,7:0.467:6:1:0.857:264,218:6:2	0/0:5,0:0.00:0:0:.:169,0:4:1
chr3	13386534	rs6788192	C	T	.	germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=43.39	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:9,14:0.609:8:6:0.429:324,434:6:3	0/0:6,0:0.00:0:0:.:198,0:2:4
chr3	13936711	rs9647360	A	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=8.63	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:5,3:0.375:3:0:0.00:167,95:3:2	0/0:4,0:0.00:0:0:.:129,0:2:2
chr3	14178465	.	CCCT	C	.	alt_allele_in_normal;str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.08;RPA=5,4;RU=CCT;STR;TLOD=4.96	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:85,2:0.026:0:2:.:2890,71:50:35	0/0:51,3:0.043:0:3:.:1732,104:31:20
chr3	14661790	rs9840626	C	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.31;TLOD=17.98	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:14,6:0.300:5:1:0.167:394,204:8:6	0/0:11,0:0.00:0:0:.:292,0:2:9
chr3	15134237	.	CGGT	C	.	str_contraction	ECNT=1;HCNT=3;MAX_ED=.;MIN_ED=.;NLOD=17.44;RPA=6,5;RU=GGT;STR;TLOD=10.80	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:91,4:0.042:3:1:.:2959,138:56:35	0/0:73,1:0.014:0:1:.:2339,35:41:32
chr3	15451279	rs2278962	T	A	.	clustered_events;germline_risk;t_lod_fstar	DB;ECNT=2;HCNT=2;MAX_ED=21;MIN_ED=21;NLOD=1.20;TLOD=5.40	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,2:0.333:2:0:1.00:132,61:3:1	0/0:4,0:0.00:0:0:.:128,0:1:3
chr3	15451300	rs2278961	G	A	.	clustered_events;germline_risk;t_lod_fstar	DB;ECNT=2;HCNT=2;MAX_ED=21;MIN_ED=21;NLOD=1.81;TLOD=5.79	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:3,2:0.400:1:1:0.500:110,63:3:0	0/0:6,0:0.00:0:0:.:199,0:3:3
chr3	15475403	rs3816526	T	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=17.79	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,5:0.625:2:3:0.400:124,177:1:3	0/0:4,0:0.00:0:0:.:125,0:2:2
chr3	15475518	rs2305615	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=6.82	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,2:0.667:1:1:0.500:33,67:1:0	0/0:4,0:0.00:0:0:.:136,0:2:2
chr3	15477224	rs2305612	G	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=30.02	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:5,10:0.667:5:5:0.500:167,294:2:3	0/0:6,0:0.00:0:0:.:208,0:2:4
chr3	15488036	rs1983085	T	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=13.19	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:3,4:0.571:3:1:0.750:82,133:1:2	0/0:5,0:0.00:0:0:.:159,0:4:1
chr3	15521761	.	CTG	C	.	germline_risk;str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;RPA=7,6;RU=TG;STR;TLOD=5.37	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:3,2:0.400:1:1:.:109,65:2:1	0/0:4,0:0.00:0:0:.:144,0:2:2
chr3	16219888	.	CTG	C	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=39.90;RPA=5,4;RU=TG;STR;TLOD=4.58	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:257,4:0.013:3:1:.:8676,106:134:123	0/0:162,1:6.849e-03:0:1:.:5529,34:80:82
chr3	17160842	rs13078644	A	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=10.45	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,3:0.750:3:0:0.00:31,100:0:1	0/0:5,0:0.00:0:0:.:156,0:2:3
chr3	19975998	rs4858121	G	C	.	germline_risk;t_lod_fstar	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.51;TLOD=4.28	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:38,2:0.054:2:0:1.00:1099,67:24:14	0/0:15,0:0.00:0:0:.:452,0:6:9
chr3	22990618	rs822772	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=21.55	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:10,8:0.444:5:3:0.625:342,241:6:4	0/0:4,0:0.00:0:0:.:128,0:2:2
chr3	22991497	rs822770	T	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.01;TLOD=23.14	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:6,7:0.538:3:4:0.429:198,237:1:5	0/0:10,0:0.00:0:0:.:331,0:5:5
chr3	23918669	.	C	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.02;TLOD=4.17	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:28,2:0.067:1:1:0.500:954,64:15:13	0/0:20,0:0.00:0:0:.:697,0:13:7
chr3	23967788	rs67657770	A	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.71;TLOD=46.55	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:9,14:0.609:8:6:0.429:303,466:4:5	0/0:9,0:0.00:0:0:.:298,0:4:5
chr3	24190544	rs13096529	C	T	.	germline_risk;t_lod_fstar	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=6.25	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,2:0.500:0:2:1.00:66,65:0:2	0/0:4,0:0.00:0:0:.:137,0:2:2
chr3	24229009	.	G	GA	.	alt_allele_in_normal;germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.527;RPA=6,7;RU=A;STR;TLOD=46.12	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:23,25:0.558:11:14:.:790,870:8:15	0/0:16,2:0.111:1:1:.:571,72:8:8
chr3	27409615	rs9828914	G	C	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.94;TLOD=50.35	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:13,15:0.536:8:7:0.533:442,516:10:3	0/0:19,1:0.050:1:0:1.00:645,36:9:10
chr3	31181840	.	C	G	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=12;HCNT=12;MAX_ED=66;MIN_ED=1;NLOD=9.06;TLOD=4.62	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:110,2:0.017:1:1:0.500:0|1:31181840_C_G:3682,69:56:54	0/0:57,2:0.033:2:0:0.00:0|1:31181840_C_G:1979,74:34:23
chr3	31181841	.	A	G	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=12;HCNT=12;MAX_ED=66;MIN_ED=1;NLOD=10.27;TLOD=4.59	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:110,2:0.017:1:1:0.500:0|1:31181840_C_G:3407,69:56:54	0/0:58,2:0.031:2:0:0.00:0|1:31181840_C_G:1830,70:34:24
chr3	31181843	.	C	T	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=12;HCNT=12;MAX_ED=66;MIN_ED=1;NLOD=11.17;TLOD=4.56	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:117,2:0.016:1:1:0.500:0|1:31181840_C_G:3834,62:61:56	0/0:62,2:0.030:2:0:0.00:0|1:31181840_C_G:2051,62:36:26
chr3	31181849	.	T	G	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=12;HCNT=12;MAX_ED=66;MIN_ED=1;NLOD=11.47;TLOD=4.54	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:125,2:0.016:1:1:0.500:0|1:31181840_C_G:3785,68:67:58	0/0:67,2:0.029:2:0:1.00:0|1:31181840_C_G:2049,70:41:26
chr3	31181859	.	G	A	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=12;HCNT=12;MAX_ED=66;MIN_ED=1;NLOD=12.97;TLOD=4.43	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:149,2:0.014:1:1:0.500:0|1:31181840_C_G:4926,63:81:68	0/0:72,3:0.027:3:0:1.00:0|1:31181840_C_G:2417,91:45:27
chr3	31181864	.	G	A	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=12;HCNT=12;MAX_ED=66;MIN_ED=1;NLOD=14.18;TLOD=4.35	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:158,2:0.013:1:1:0.500:0|1:31181840_C_G:5358,56:84:74	0/0:77,3:0.026:3:0:1.00:0|1:31181840_C_G:2688,88:49:28
chr3	31181869	.	G	T	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=12;HCNT=12;MAX_ED=66;MIN_ED=1;NLOD=14.48;TLOD=4.34	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:164,3:0.013:2:1:0.667:0|1:31181840_C_G:5440,85:88:76	0/0:81,3:0.026:3:0:1.00:0|1:31181840_C_G:2715,93:51:30
chr3	31181874	.	G	A	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=12;HCNT=12;MAX_ED=66;MIN_ED=1;NLOD=15.38;TLOD=4.27	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:182,3:0.012:2:1:0.667:0|1:31181840_C_G:5212,95:97:85	0/0:84,4:0.025:4:0:1.00:0|1:31181840_C_G:2486,128:53:31
chr3	31181884	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=12;HCNT=12;MAX_ED=66;MIN_ED=1;NLOD=14.19;TLOD=6.82	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:192,3:0.016:2:1:0.333:0|1:31181840_C_G:6100,99:102:90	0/0:92,5:0.033:5:0:0.00:0|1:31181840_C_G:2898,167:58:34
chr3	31181894	.	C	T	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=12;HCNT=12;MAX_ED=66;MIN_ED=1;NLOD=9.69;TLOD=4.17	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:208,3:0.010:2:1:0.333:0|1:31181840_C_G:6539,95:116:92	0/0:96,4:0.043:4:0:0.00:0|1:31181840_C_G:3006,126:60:36
chr3	31181901	.	C	T	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=12;HCNT=12;MAX_ED=66;MIN_ED=1;NLOD=5.49;TLOD=4.14	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:214,2:0.010:1:1:0.500:0|1:31181840_C_G:7176,66:117:97	0/0:97,5:0.064:4:1:0.200:0|1:31181840_C_G:3342,166:59:38
chr3	31181906	.	T	C	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=12;HCNT=12;MAX_ED=66;MIN_ED=1;NLOD=5.80;TLOD=5.54	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:212,3:0.016:2:1:0.667:0|1:31181840_C_G:6910,89:120:92	0/0:92,6:0.063:4:2:0.667:0|1:31181840_C_G:2994,182:57:35
chr3	32190809	.	AG	A	.	alt_allele_in_normal;germline_risk	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=0.532;RPA=2,1;RU=G;STR;TLOD=32.90	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:13,11:0.458:4:7:.:433,358:4:9	0/0:14,1:0.071:0:1:.:463,30:8:6
chr3	32536973	.	G	T	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.62;TLOD=4.08	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:31,2:0.061:2:0:1.00:1076,64:17:14	0/0:23,0:0.00:0:0:.:804,0:8:15
chr3	32891868	.	C	T	.	germline_risk	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=0.897;TLOD=18.51	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:51,18:0.170:1:1:0.500:1271,70:22:15	0/0:24,4:0.080:0:0:.:792,0:11:12
chr3	36443331	rs3749279	C	T	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.44;TLOD=37.17	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:19,13:0.387:5:8:0.615:618,438:10:9	0/0:17,1:0.056:1:0:0.00:585,35:4:13
chr3	36629726	rs62243834	C	A	.	germline_risk;t_lod_fstar	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=5.17	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:9,3:0.222:2:1:0.333:320,96:2:7	0/0:4,0:0.00:0:0:.:141,0:2:2
chr3	36880304	rs4404400	C	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.41;TLOD=28.69	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:9,10:0.529:5:5:0.500:305,328:3:6	0/0:10,0:0.00:0:0:.:343,0:2:8
chr3	37328280	.	ACT	A	.	alt_allele_in_normal;str_contraction;t_lod_fstar	ECNT=1;HCNT=3;MAX_ED=.;MIN_ED=.;NLOD=4.06;RPA=10,9;RU=CT;STR;TLOD=4.73	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:43,6:0.063:5:1:.:1233,188:25:15	0/0:27,2:0.035:0:2:.:826,64:13:13
chr3	38016407	.	A	G	.	germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=7.64	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:5,3:0.375:1:2:0.667:165,88:4:1	0/0:5,0:0.00:0:0:.:162,0:2:3
chr3	38016553	rs72863996	C	T	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.55;TLOD=36.63	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:28,13:0.371:8:5:0.385:923,405:17:11	0/0:28,1:0.037:1:0:0.00:994,31:14:14
chr3	38326516	rs149739	G	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=9.77	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,3:0.600:3:0:1.00:68,83:1:1	0/0:4,0:0.00:0:0:.:136,0:2:2
chr3	38329065	rs196364	A	G	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.44;TLOD=63.18	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:26,23:0.488:10:13:0.565:838,724:16:10	0/0:18,1:0.056:0:1:1.00:587,25:6:12
chr3	38479934	rs4407366	C	T	.	germline_risk;t_lod_fstar	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=5.79	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:3,2:0.400:1:1:0.500:105,63:1:2	0/0:7,0:0.00:0:0:.:232,0:7:0
chr3	38496708	.	C	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=9.67	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,3:0.600:0:3:1.00:57,97:1:1	0/0:5,0:0.00:0:0:.:149,0:5:0
chr3	38566459	.	T	C	.	t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=20.77;TLOD=4.33	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:167,4:0.019:1:3:0.250:5467,129:75:92	0/0:76,0:0.00:0:0:.:2523,0:37:39
chr3	38905200	.	G	T	.	PASS	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=35.82;TLOD=10.14	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:206,6:0.031:3:3:0.500:7010,192:109:97	0/0:127,0:0.00:0:0:.:4426,0:67:60
chr3	38909946	rs11720056	T	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=18.32	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,5:0.833:2:3:0.400:33,172:0:1	0/0:4,0:0.00:0:0:.:128,0:1:3
chr3	39084850	.	C	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=13.95	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,4:0.667:2:2:0.500:72,137:0:2	0/0:6,0:0.00:0:0:.:215,0:3:3
chr3	39110757	rs7613766	C	G	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.54;TLOD=16.23	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:20,7:0.259:5:2:0.286:658,197:10:10	0/0:15,1:0.063:1:0:0.00:495,28:9:6
chr3	39359868	rs11710500	C	T	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=0.672;TLOD=79.38	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:18,27:0.595:10:17:0.630:634,861:9:9	0/0:28,2:0.074:1:1:0.500:963,65:12:16
chr3	40457394	.	G	A	.	germline_risk;t_lod_fstar	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=4.13	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:27,2:0.071:2:0:1.00:839,63:15:12	0/0:6,0:0.00:0:0:.:187,0:4:2
chr3	40515780	.	TTGTGTG	T	.	germline_risk;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.59;RPA=20,17;RU=TG;STR;TLOD=5.93	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:8,7:0.467:1:1:.:0,65:0:0	0/0:10,0:0.00:0:0:.:28,0:0:1
chr3	41227185	.	GAT	G	.	alt_allele_in_normal;germline_risk;str_contraction	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.676;RPA=7,6;RU=AT;STR;TLOD=11.08	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:49,5:0.109:3:2:.:1733,181:24:25	0/0:24,2:0.111:0:2:.:856,72:12:12
chr3	42125745	.	A	G	.	PASS	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.71;TLOD=23.89	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,7:0.636:5:2:0.286:129,237:0:4	0/0:9,0:0.00:0:0:.:297,0:4:5
chr3	42263292	rs1868522	A	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.21;TLOD=60.67	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:13,18:0.581:9:9:0.500:418,616:7:6	0/0:14,0:0.00:0:0:.:459,0:7:7
chr3	42527577	rs2276831	C	A	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.64;TLOD=40.31	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:14,13:0.481:8:5:0.385:370,422:3:11	0/0:17,1:0.056:1:0:0.00:452,33:11:6
chr3	42568805	rs62248845	T	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.41;TLOD=40.24	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:10,12:0.545:7:5:0.583:322,411:6:4	0/0:8,0:0.00:0:0:.:258,0:5:3
chr3	43081310	.	T	G	.	t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=11.74;TLOD=4.19	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:68,1:0.030:1:0:1.00:2213,34:39:29	0/0:41,0:0.00:0:0:.:1337,0:20:21
chr3	43691000	.	CGGA	C	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=5.71;RPA=4,3;RU=GGA;STR;TLOD=4.64	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:39,3:0.057:3:0:.:1152,73:25:14	0/0:21,0:0.00:0:0:.:635,0:10:11
chr3	44893527	rs62242575	C	T	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.38;TLOD=79.22	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:49,31:0.382:16:15:0.484:1708,1031:26:23	0/0:32,2:0.067:1:1:0.500:1129,67:16:16
chr3	44901897	rs1995641	G	A	.	alt_allele_in_normal	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.18;TLOD=88.47	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:43,35:0.420:22:13:0.629:1346,1151:17:26	0/0:45,2:0.047:0:2:0.00:1386,68:24:21
chr3	45500293	.	C	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=21.71	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,7:0.636:3:4:0.571:138,215:1:3	0/0:4,0:0.00:0:0:.:140,0:2:2
chr3	45722079	.	T	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.72;TLOD=4.06	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:52,3:0.043:2:1:0.667:1711,101:28:24	0/0:21,0:0.00:0:0:.:701,0:11:10
chr3	45763242	rs6770261	C	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=34.10	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,10:0.833:9:1:0.100:56,317:0:2	0/0:4,0:0.00:0:0:.:112,0:2:2
chr3	46673307	rs11130103	C	T	.	clustered_events;germline_risk;t_lod_fstar	DB;ECNT=2;HCNT=2;MAX_ED=24;MIN_ED=24;NLOD=1.20;TLOD=5.10	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:6,2:0.250:2:0:0.00:209,61:2:4	0/0:4,0:0.00:0:0:.:129,0:1:3
chr3	46673331	rs11130104	C	G	.	clustered_events;germline_risk;t_lod_fstar	DB;ECNT=2;HCNT=2;MAX_ED=24;MIN_ED=24;NLOD=1.20;TLOD=4.69	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,2:0.400:2:0:0.00:137,52:1:3	0/0:4,0:0.00:0:0:.:136,0:1:3
chr3	48562913	.	C	T	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.61;TLOD=4.24	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:16,2:0.125:0:2:1.00:515,59:9:7	0/0:13,0:0.00:0:0:.:393,0:9:4
chr3	48568632	rs2532848	G	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=18.87	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:5,6:0.545:2:4:0.333:172,193:2:3	0/0:7,0:0.00:0:0:.:241,0:5:2
chr3	48569957	.	A	T	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=9.63;TLOD=4.80	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:61,1:0.034:1:0:0.00:1983,14:25:36	0/0:35,0:0.00:0:0:.:1139,0:23:12
chr3	48581427	.	C	T	.	t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=30.65;TLOD=4.18	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:192,4:0.017:4:0:0.00:6518,125:106:86	0/0:117,0:0.00:0:0:.:3944,0:54:63
chr3	48646241	.	C	T	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.77;TLOD=62.32	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:41,24:0.396:14:10:0.417:1265,777:22:19	0/0:34,2:0.065:1:1:0.500:1012,66:13:21
chr3	48647843	.	T	C	.	t_lod_fstar	ECNT=1;HCNT=10;MAX_ED=.;MIN_ED=.;NLOD=31.55;TLOD=4.66	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:201,3:0.016:2:1:0.667:6558,99:108:93	0/0:110,0:0.00:0:0:.:3600,0:56:54
chr3	49015352	rs8926	T	A	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.00;TLOD=50.86	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:23,17:0.425:9:8:0.529:728,550:14:9	0/0:25,1:0.038:1:0:1.00:776,33:16:9
chr3	49056880	.	TTGC	T	.	alt_allele_in_normal;str_contraction	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=6.73;RPA=5,4;RU=TGC;STR;TLOD=6.57	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:107,3:0.029:1:2:.:3546,101:62:45	0/0:51,2:0.041:0:2:.:1690,67:25:26
chr3	49077111	rs7626445	C	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.42;TLOD=54.78	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:16,18:0.529:9:9:0.500:569,564:7:9	0/0:18,0:0.00:0:0:.:625,0:7:11
chr3	49100471	rs4521268	G	T	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=4.81;TLOD=67.21	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:16,21:0.583:14:7:0.667:571,680:10:6	0/0:28,1:0.034:0:1:0.00:964,34:10:18
chr3	49119243	rs4279134	A	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.71;TLOD=33.06	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:11,10:0.476:5:5:0.500:337,346:7:4	0/0:9,0:0.00:0:0:.:274,0:6:3
chr3	49128636	rs9865051	C	T	.	alt_allele_in_normal	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=6.03;TLOD=207.22	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:71,72:0.504:43:29:0.403:2408,2384:37:34	0/0:60,4:0.066:3:1:0.250:2056,103:27:33
chr3	49163194	rs4955418	A	G	.	alt_allele_in_normal	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.71;TLOD=105.36	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:33,33:0.500:22:11:0.333:1016,1095:24:9	0/0:31,1:0.031:0:1:1.00:964,34:20:11
chr3	49174556	rs10865954	T	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=19.39	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,6:0.857:1:5:0.167:33,180:0:1	0/0:5,0:0.00:0:0:.:167,0:1:4
chr3	49211948	rs9867285	A	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.71;TLOD=32.09	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:9,10:0.526:7:3:0.300:287,331:3:6	0/0:9,0:0.00:0:0:.:298,0:4:5
chr3	49325459	rs1865741	A	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.41;TLOD=17.37	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:5,5:0.500:1:4:0.800:168,180:3:2	0/0:8,0:0.00:0:0:.:260,0:3:5
chr3	49417897	rs11715915	C	T	.	PASS	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=12.47;TLOD=111.12	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:38,36:0.500:15:21:0.583:1312,1163:19:19	0/0:53,1:0.019:0:1:1.00:1805,33:28:25
chr3	49425999	.	GAC	G	.	alt_allele_in_normal;germline_risk;str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.44;RPA=6,5;RU=AC;STR;TLOD=4.23	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:28,2:0.074:1:1:.:984,70:13:15	0/0:18,1:0.059:0:1:.:624,36:9:9
chr3	49684964	.	G	A	.	alt_allele_in_normal;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.85;TLOD=4.09	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:41,3:0.068:2:1:0.667:1396,96:24:17	0/0:24,1:0.040:0:1:0.00:827,32:13:11
chr3	49687999	.	AG	A	.	germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;RPA=2,1;RU=G;STR;TLOD=9.44	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:3,3:0.500:1:2:.:100,102:1:2	0/0:4,0:0.00:0:0:.:134,0:2:2
chr3	49715570	.	T	G	.	alt_allele_in_normal	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.60;TLOD=61.52	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:19,23:0.538:14:9:0.609:585,700:14:5	0/0:21,1:0.045:1:0:1.00:659,35:9:12
chr3	50059886	rs2245365	C	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=6.75	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:0,2:1.00:0:2:1.00:0,58:0:0	0/0:4,0:0.00:0:0:.:142,0:0:4
chr3	50117556	rs2624825	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=15.87	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:5,5:0.500:2:3:0.400:169,165:4:1	0/0:6,0:0.00:0:0:.:204,0:3:3
chr3	50270884	.	T	C	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.71;TLOD=4.44	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:18,2:0.100:2:0:1.00:564,63:10:8	0/0:10,0:0.00:0:0:.:323,0:7:3
chr3	50376288	.	TTC	T	.	germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=37.02	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,9:0.692:6:3:.:136,297:2:2	0/0:4,0:0.00:0:0:.:136,0:3:1
chr3	51715920	.	T	G	.	alt_allele_in_normal;t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=3.30;TLOD=5.99	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:63,28:0.282:11:17:0.393:1843,158:38:25	0/0:41,12:0.235:2:10:0.167:1108,48:19:22
chr3	51956630	rs73082754	C	A	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.07;TLOD=95.28	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:33,35:0.525:12:23:0.657:1137,1073:19:14	0/0:26,2:0.074:1:1:0.500:892,61:6:20
chr3	52193686	rs114431834	C	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.01;TLOD=27.19	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:10,9:0.474:2:7:0.778:290,286:3:7	0/0:10,0:0.00:0:0:.:295,0:7:3
chr3	52278233	.	G	A	.	alt_allele_in_normal;germline_risk	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.08;TLOD=68.95	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:41,25:0.426:13:12:0.520:1377,810:29:12	0/0:29,2:0.069:1:1:0.500:995,67:15:14
chr3	52398786	.	C	T	.	germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=21.70	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:5,7:0.583:4:3:0.429:170,219:3:2	0/0:6,0:0.00:0:0:.:204,0:3:3
chr3	52487477	.	TGGA	T	.	str_contraction	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.70;RPA=4,3;RU=GGA;STR;TLOD=7.35	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:36,3:0.077:1:2:.:1099,95:22:14	0/0:22,0:0.00:0:0:.:685,0:13:9
chr3	52504284	rs7613444	G	C	.	germline_risk;t_lod_fstar	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=4.29	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,2:0.333:0:2:0.00:139,50:3:1	0/0:6,0:0.00:0:0:.:198,0:4:2
chr3	52516629	.	A	G	.	alt_allele_in_normal;germline_risk;t_lod_fstar	ECNT=2;HCNT=1;MAX_ED=2;MIN_ED=2;NLOD=1.94;TLOD=5.32	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:42,5:0.087:0:5:1.00:0|1:52516629_A_G:1375,60:23:19	0/0:28,3:0.097:2:1:0.333:0|1:52516629_A_G:903,25:15:13
chr3	52516631	.	C	G	.	alt_allele_in_normal;t_lod_fstar	ECNT=2;HCNT=1;MAX_ED=2;MIN_ED=2;NLOD=2.24;TLOD=5.32	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:40,4:0.087:0:4:1.00:0|1:52516629_A_G:1306,51:22:18	0/0:29,2:0.094:1:1:0.500:0|1:52516629_A_G:986,23:15:14
chr3	52520584	.	A	C	.	alt_allele_in_normal;t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=12.01;TLOD=5.10	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:75,17:0.146:12:5:0.294:2303,163:43:32	0/0:48,3:0.060:2:1:0.333:1492,30:30:18
chr3	52525151	.	CGGGG	C	.	germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.626;RPA=13,9;RU=G;STR;TLOD=12.76	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,5:0.313:2:1:.:0,86:0:0	0/0:3,0:0.00:0:0:.:0,0:0:0
chr3	52648313	.	AAAC	A	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.71;RPA=7,6;RU=AAC;STR;TLOD=5.21	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:36,2:0.053:1:1:.:1215,70:19:17	0/0:19,0:0.00:0:0:.:640,0:9:10
chr3	52694007	.	A	G	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.42;TLOD=4.20	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:44,2:0.044:0:2:1.00:1393,68:24:20	0/0:18,0:0.00:0:0:.:561,0:9:9
chr3	52752500	.	TTTAAG	T	.	germline_risk;str_contraction	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;RPA=2,1;RU=TTAAG;STR;TLOD=15.61	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,4:0.500:1:3:.:135,136:1:3	0/0:5,0:0.00:0:0:.:171,0:0:5
chr3	53181859	rs11130350	A	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=9.83	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:5,3:0.375:2:1:0.333:152,107:3:2	0/0:5,0:0.00:0:0:.:159,0:4:1
chr3	53189041	.	G	T	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.91;TLOD=4.86	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:28,1:0.065:0:1:0.00:975,32:17:11	0/0:14,0:0.00:0:0:.:493,0:5:9
chr3	53858614	rs9840079	T	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=21.08	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,6:0.750:1:5:0.167:60,207:1:1	0/0:5,0:0.00:0:0:.:164,0:4:1
chr3	53872636	rs2289203	T	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.61;TLOD=60.98	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:10,17:0.630:7:10:0.412:316,606:5:5	0/0:12,0:0.00:0:0:.:385,0:3:9
chr3	53876091	.	A	G	.	alt_allele_in_normal;clustered_events	ECNT=2;HCNT=1;MAX_ED=3;MIN_ED=3;NLOD=5.85;TLOD=12.03	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:21,17:0.457:9:8:0.471:0|1:53876091_A_G:701,584:14:7	0/0:29,3:0.069:0:3:1.00:0|1:53876091_A_G:957,108:12:17
chr3	53876094	.	AG	A	.	alt_allele_in_normal;clustered_events	ECNT=2;HCNT=1;MAX_ED=3;MIN_ED=3;NLOD=5.85;TLOD=11.78	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:23,17:0.444:9:8:.:0|1:53876091_A_G:778,545:15:8	0/0:28,3:0.069:0:3:.:0|1:53876091_A_G:923,102:11:17
chr3	53888230	rs2304576	A	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=14.65	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,4:0.667:2:2:0.500:68,144:2:0	0/0:4,0:0.00:0:0:.:137,0:2:2
chr3	54899736	rs41277455	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=11.99	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,4:0.500:1:3:0.250:106,125:4:0	0/0:4,0:0.00:0:0:.:114,0:2:2
chr3	57109348	rs9835455	T	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=20.47	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:5,6:0.545:2:4:0.333:161,209:2:3	0/0:4,0:0.00:0:0:.:129,0:1:3
chr3	57114940	rs11916303	C	A	.	germline_risk;t_lod_fstar	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=5.70	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,2:0.333:2:0:0.00:139,64:3:1	0/0:7,0:0.00:0:0:.:239,0:3:4
chr3	58134591	.	GGT	G	.	alt_allele_in_normal;str_contraction	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=7.24;RPA=8,7;RU=GT;STR;TLOD=31.87	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:185,18:0.100:12:6:.:6186,621:109:76	0/0:109,8:0.075:3:5:.:3739,275:62:47
chr3	58427935	rs7230	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.80;TLOD=15.00	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,5:0.833:0:5:0.00:32,150:1:0	0/0:6,0:0.00:0:0:.:162,0:3:3
chr3	58428655	rs62259769	C	T	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.838;TLOD=74.39	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:14,24:0.649:14:10:0.417:481,734:4:10	0/0:15,1:0.067:1:0:0.00:538,32:10:5
chr3	58567282	.	CCTT	C	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.40;RPA=4,3;RU=CTT;STR;TLOD=5.41	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:45,3:0.043:2:1:.:1536,105:29:16	0/0:20,0:0.00:0:0:.:682,0:16:4
chr3	61743032	.	C	T	.	t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=5.67;TLOD=4.22	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:28,2:0.071:1:1:0.500:873,64:14:14	0/0:21,0:0.00:0:0:.:591,0:9:12
chr3	66243427	rs1678092	T	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=8.22	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:3,3:0.500:2:1:0.667:98,86:1:2	0/0:4,0:0.00:0:0:.:133,0:3:1
chr3	66377858	rs1046844	C	T	.	PASS	DB;ECNT=1;HCNT=8;MAX_ED=.;MIN_ED=.;NLOD=9.92;TLOD=148.47	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:32,48:0.600:27:21:0.438:1110,1489:14:18	0/0:44,1:0.022:0:1:1.00:1554,31:21:23
chr3	69061946	.	GGA	G	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=6.95;RPA=9,8;RU=GA;STR;TLOD=5.22	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:54,4:0.070:2:2:.:1774,137:28:26	0/0:32,1:0.030:1:0:.:1061,19:15:17
chr3	69197001	rs13059488	A	G	.	alt_allele_in_normal	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.24;TLOD=74.23	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:38,25:0.390:13:12:0.480:1293,872:17:21	0/0:23,1:0.048:0:1:1.00:777,36:8:15
chr3	69250290	.	CGTGTGTGTGTGTGTGT	C	.	germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.18;RPA=14,6;RU=GT;STR;TLOD=7.14	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:6,2:0.250:0:2:.:0,52:0:0	0/0:4,0:0.00:0:0:.:0,0:0:0
chr3	74873263	rs6774188	A	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.61;TLOD=21.72	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:12,9:0.450:4:5:0.556:390,232:6:6	0/0:12,0:0.00:0:0:.:393,0:5:7
chr3	75430799	.	C	T	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.62;TLOD=4.00	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:43,2:0.044:1:1:0.500:1514,66:20:23	0/0:26,0:0.00:0:0:.:881,0:17:9
chr3	75669024	.	G	T	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=16;HCNT=30;MAX_ED=65;MIN_ED=3;NLOD=26.22;TLOD=4.68	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:108,2:0.019:1:1:0.500:0|1:75669024_G_T:3079,67:49:59	0/0:119,2:0.016:1:1:0.500:0|1:75669024_G_T:3270,64:56:63
chr3	75669027	.	G	A	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=16;HCNT=2;MAX_ED=65;MIN_ED=3;NLOD=27.12;TLOD=4.68	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:112,2:0.019:1:1:0.500:0|1:75669027_G_A:3673,64:52:60	0/0:123,6:0.044:2:4:0.333:0|1:75669027_G_A:4154,128:60:63
chr3	75669033	.	C	A	.	alt_allele_in_normal;clustered_events;t_lod_fstar;triallelic_site	ECNT=16;HCNT=2;MAX_ED=65;MIN_ED=3;NLOD=38.25;TLOD=4.51	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:116,2:9.346e-03:1:1:.:0|1:75669027_G_A:3759,64:56:60	0/0:158,4:0.012:2:2:.:0|1:75669027_G_A:5143,121:79:79
chr3	75669036	.	G	A	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=16;HCNT=30;MAX_ED=65;MIN_ED=3;NLOD=29.55;TLOD=4.67	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:114,2:0.018:1:1:0.500:0|1:75669024_G_T:3939,69:55:59	0/0:170,3:0.022:1:2:0.333:0|1:75669024_G_T:5828,99:87:83
chr3	75669065	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=16;HCNT=8;MAX_ED=65;MIN_ED=3;NLOD=63.62;TLOD=21.16	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:201,8:0.037:3:5:0.625:6879,242:96:105	0/0:395,9:0.022:4:5:0.556:13350,269:199:196
chr3	75669068	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=16;HCNT=5;MAX_ED=65;MIN_ED=3;NLOD=78.34;TLOD=6.62	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:213,3:0.014:1:2:0.667:6904,100:103:110	0/0:428,6:0.014:3:3:0.500:14141,161:213:215
chr3	75669072	.	A	T	.	alt_allele_in_normal;clustered_events	ECNT=16;HCNT=2;MAX_ED=65;MIN_ED=3;NLOD=90.07;TLOD=17.87	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:220,7:0.030:5:2:0.286:6911,219:105:115	0/0:468,4:0.011:4:0:0.00:14680,125:229:239
chr3	75669073	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=16;HCNT=5;MAX_ED=65;MIN_ED=3;NLOD=48.07;TLOD=17.84	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:224,6:0.030:2:4:0.667:7579,191:110:114	0/0:463,16:0.034:9:7:0.438:15715,514:227:236
chr3	75669074	.	C	A	.	alt_allele_in_normal;clustered_events	ECNT=16;HCNT=5;MAX_ED=65;MIN_ED=3;NLOD=96.97;TLOD=11.94	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:227,5:0.021:2:3:0.600:0|1:75669074_C_A:7696,165:111:116	0/0:478,5:0.010:2:3:0.600:0|1:75669074_C_A:16285,160:236:242
chr3	75669076	.	G	C	.	alt_allele_in_normal;clustered_events	ECNT=16;HCNT=1;MAX_ED=65;MIN_ED=3;NLOD=99.08;TLOD=6.47	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:238,3:0.012:3:0:1.00:8287,105:114:124	0/0:496,3:5.917e-03:0:3:0.00:17339,106:246:250
chr3	75669077	.	A	T	.	alt_allele_in_normal;clustered_events	ECNT=16;HCNT=2;MAX_ED=65;MIN_ED=3;NLOD=69.69;TLOD=11.88	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:237,5:0.020:3:2:0.400:0|1:75669077_A_T:7671,132:114:123	0/0:495,11:0.021:6:5:0.455:0|1:75669077_A_T:16072,355:244:251
chr3	75669080	.	A	T	.	alt_allele_in_normal;clustered_events	ECNT=16;HCNT=2;MAX_ED=65;MIN_ED=3;NLOD=78.42;TLOD=11.76	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:243,5:0.019:3:2:0.400:0|1:75669077_A_T:7981,162:117:126	0/0:518,11:0.020:6:5:0.455:0|1:75669077_A_T:16728,364:256:262
chr3	75669081	.	C	T	.	alt_allele_in_normal;clustered_events;triallelic_site	ECNT=16;HCNT=5;MAX_ED=65;MIN_ED=3;NLOD=88.90;TLOD=11.00	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:230,5:6.925e-03:2:3:0.600:0|1:75669074_C_A:7414,162:109:121	0/0:511,8:8.669e-03:4:4:0.500:0|1:75669074_C_A:16389,261:252:259
chr3	75669082	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=16;HCNT=4;MAX_ED=65;MIN_ED=3;NLOD=55.33;TLOD=35.89	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:242,13:0.048:9:4:0.692:7230,424:111:131	0/0:540,17:0.031:11:6:0.647:16086,554:262:278
chr3	75669083	.	G	A	.	clustered_events;multi_event_alt_allele_in_normal;t_lod_fstar	ECNT=16;HCNT=1;MAX_ED=65;MIN_ED=3;NLOD=124.94;TLOD=5.52	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:254,2:0.011:1:1:0.500:0|1:75669083_G_A:8542,62:119:135	0/0:568,1:1.709e-03:1:0:1.00:0|1:75669083_G_A:19161,33:278:290
chr3	75669089	.	C	T	.	clustered_events;multi_event_alt_allele_in_normal;t_lod_fstar	ECNT=16;HCNT=1;MAX_ED=65;MIN_ED=3;NLOD=122.23;TLOD=5.56	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:257,3:0.011:2:1:0.333:0|1:75669083_G_A:8598,99:118:139	0/0:584,1:1.736e-03:1:0:0.00:0|1:75669083_G_A:19749,34:284:300
chr3	75669189	.	G	T	.	alt_allele_in_normal;clustered_events	ECNT=73;HCNT=3;MAX_ED=208;MIN_ED=1;NLOD=49.77;TLOD=47.87	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:362,18:0.024:9:9:0.500:0|1:75669189_G_T:9837,589:196:158	0/0:455,20:0.022:6:14:0.300:0|1:75669189_G_T:13272,665:223:222
chr3	75669190	.	G	A	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=73;HCNT=5;MAX_ED=208;MIN_ED=1;NLOD=134.68;TLOD=5.51	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:496,2:5.859e-03:0:2:0.00:15613,67:268:228	0/0:595,8:0.014:3:5:0.375:19336,269:291:304
chr3	75669193	.	G	T	.	alt_allele_in_normal;clustered_events	ECNT=73;HCNT=3;MAX_ED=208;MIN_ED=1;NLOD=57.47;TLOD=92.02	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:477,34:0.067:25:9:0.735:0|1:75669193_G_T:14745,907:249:228	0/0:569,29:0.045:18:11:0.621:0|1:75669193_G_T:18598,846:271:298
chr3	75669195	.	C	T	.	alt_allele_in_normal;clustered_events;triallelic_site	ECNT=73;HCNT=6;MAX_ED=208;MIN_ED=1;NLOD=130.66;TLOD=31.34	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:472,12:0.013:10:2:0.167:0|1:75669195_C_T:13299,380:248:224	0/0:573,11:9.083e-03:5:6:0.545:0|1:75669195_C_T:16857,355:271:302
chr3	75669196	.	G	T	.	alt_allele_in_normal;clustered_events	ECNT=73;HCNT=1;MAX_ED=208;MIN_ED=1;NLOD=134.86;TLOD=11.54	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:434,8:8.939e-03:5:3:0.625:12189,269:234:196	0/0:503,3:2.841e-03:1:2:0.333:14868,100:246:254
chr3	75669197	.	C	A	.	alt_allele_in_normal;clustered_events	ECNT=73;HCNT=3;MAX_ED=208;MIN_ED=1;NLOD=85.08;TLOD=46.74	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:429,18:0.021:9:9:0.500:0|1:75669189_G_T:11825,586:216:205	0/0:505,16:0.015:5:11:0.688:0|1:75669189_G_T:14245,528:239:253
chr3	75669198	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=73;HCNT=1;MAX_ED=208;MIN_ED=1;NLOD=78.11;TLOD=27.80	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:513,11:0.025:2:9:0.182:0|1:75669198_G_A:14787,222:268:245	0/0:591,28:0.048:10:18:0.357:0|1:75669198_G_A:17761,879:282:309
chr3	75669203	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=73;HCNT=1;MAX_ED=208;MIN_ED=1;NLOD=160.99;TLOD=11.34	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:551,8:0.016:5:3:0.625:0|1:75669203_G_A:17232,143:282:269	0/0:646,7:0.010:7:0:1.00:0|1:75669203_G_A:20799,190:302:344
chr3	75669204	.	C	A	.	alt_allele_in_normal;clustered_events	ECNT=73;HCNT=1;MAX_ED=208;MIN_ED=1;NLOD=92.75;TLOD=49.48	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:551,18:0.034:9:9:0.500:0|1:75669204_C_A:17290,570:285:266	0/0:636,26:0.038:12:14:0.538:0|1:75669204_C_A:20892,841:299:337
chr3	75669210	.	G	C	.	alt_allele_in_normal;clustered_events	ECNT=73;HCNT=6;MAX_ED=208;MIN_ED=1;NLOD=138.32;TLOD=33.33	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:475,13:0.014:11:2:0.846:0|1:75669195_C_T:15066,370:241:226	0/0:591,9:8.828e-03:4:5:0.444:0|1:75669195_C_T:19086,242:281:301
chr3	75669211	.	G	T	.	alt_allele_in_normal;clustered_events	ECNT=73;HCNT=1;MAX_ED=208;MIN_ED=1;NLOD=66.89;TLOD=51.46	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:492,20:0.019:10:10:0.500:0|1:75669204_C_A:15535,614:257:231	0/0:576,27:0.022:13:14:0.481:0|1:75669204_C_A:18598,808:275:300
chr3	75669213	.	A	T	.	alt_allele_in_normal;clustered_events	ECNT=73;HCNT=1;MAX_ED=208;MIN_ED=1;NLOD=82.54;TLOD=55.73	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:527,20:0.038:10:10:0.500:0|1:75669204_C_A:15581,645:275:252	0/0:642,26:0.039:13:13:0.500:0|1:75669204_C_A:19521,818:296:346
chr3	75669217	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=73;HCNT=1;MAX_ED=208;MIN_ED=1;NLOD=75.32;TLOD=59.07	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:498,22:0.041:10:12:0.455:0|1:75669204_C_A:14585,710:256:242	0/0:610,25:0.040:12:13:0.480:0|1:75669204_C_A:18919,808:280:330
chr3	75669218	.	A	C	.	alt_allele_in_normal;clustered_events	ECNT=73;HCNT=3;MAX_ED=208;MIN_ED=1;NLOD=40.81;TLOD=74.87	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:491,24:0.051:18:6:0.250:0|1:75669193_G_T:14926,719:250:241	0/0:602,29:0.047:15:14:0.483:0|1:75669193_G_T:18844,988:275:327
chr3	75669226	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=73;HCNT=23;MAX_ED=208;MIN_ED=1;NLOD=61.74;TLOD=56.34	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:434,24:0.052:10:14:0.583:14459,732:218:216	0/0:575,22:0.041:10:12:0.545:19476,571:265:310
chr3	75669228	.	G	T	.	alt_allele_in_normal;clustered_events	ECNT=73;HCNT=3;MAX_ED=208;MIN_ED=1;NLOD=32.00;TLOD=47.18	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:400,18:0.022:11:7:0.611:0|1:75669193_G_T:12192,573:187:204	0/0:512,23:0.025:12:11:0.522:0|1:75669193_G_T:15861,751:228:271
chr3	75669229	.	C	A	.	alt_allele_in_normal;clustered_events	ECNT=73;HCNT=1;MAX_ED=208;MIN_ED=1;NLOD=73.77;TLOD=32.65	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:431,13:0.027:2:11:0.846:0|1:75669198_G_A:14493,378:220:211	0/0:574,27:0.044:6:21:0.778:0|1:75669198_G_A:19348,836:276:298
chr3	75669233	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=73;HCNT=1;MAX_ED=208;MIN_ED=1;NLOD=87.59;TLOD=29.45	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:450,12:0.024:2:10:0.833:0|1:75669198_G_A:15277,404:230:220	0/0:602,25:0.038:6:19:0.760:0|1:75669198_G_A:20747,805:300:302
chr3	75669240	.	T	C	.	alt_allele_in_normal;clustered_events	ECNT=73;HCNT=1;MAX_ED=208;MIN_ED=1;NLOD=152.78;TLOD=40.05	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:541,14:0.027:8:6:0.571:0|1:75669203_G_A:16763,474:269:272	0/0:699,12:0.017:8:4:0.667:0|1:75669203_G_A:22134,402:337:362
chr3	75669242	.	C	A	.	alt_allele_in_normal;clustered_events	ECNT=73;HCNT=28;MAX_ED=208;MIN_ED=1;NLOD=8.22;TLOD=46.97	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:559,17:0.033:8:9:0.529:18506,537:282:277	0/0:697,43:0.064:25:18:0.419:23423,1351:334:363
chr3	75669244	.	A	G	.	alt_allele_in_normal;clustered_events	ECNT=73;HCNT=1;MAX_ED=208;MIN_ED=1;NLOD=31.95;TLOD=107.50	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:590,34:0.056:17:17:0.500:0|1:75669204_C_A:18720,1033:297:293	0/0:731,45:0.056:25:20:0.444:0|1:75669204_C_A:23432,1356:353:378
chr3	75669245	.	G	C	.	alt_allele_in_normal;clustered_events;triallelic_site	ECNT=73;HCNT=23;MAX_ED=208;MIN_ED=1;NLOD=29.95;TLOD=39.63	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:549,16:0.011:9:7:0.563:18095,553:277:256	0/0:624,35:0.019:22:13:0.629:21040,1184:293:323
chr3	75669248	.	C	G	.	alt_allele_in_normal;clustered_events	ECNT=73;HCNT=4;MAX_ED=208;MIN_ED=1;NLOD=95.31;TLOD=56.44	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:587,22:0.021:12:8:0.400:15460,579:246:243	0/0:683,25:0.019:15:10:0.400:18354,720:292:293
chr3	75669249	.	G	T	.	alt_allele_in_normal;clustered_events	ECNT=73;HCNT=1;MAX_ED=208;MIN_ED=1;NLOD=53.27;TLOD=111.20	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:665,39:0.057:20:19:0.513:0|1:75669204_C_A:20417,1231:339:326	0/0:800,50:0.052:28:22:0.560:0|1:75669204_C_A:24960,1626:406:394
chr3	75669256	.	T	C	.	alt_allele_in_normal;clustered_events	ECNT=73;HCNT=8;MAX_ED=208;MIN_ED=1;NLOD=53.91;TLOD=90.79	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:829,33:0.039:16:17:0.485:26579,1106:406:423	0/0:927,61:0.058:33:28:0.541:29802,2025:468:459
chr3	75669257	.	C	A	.	alt_allele_in_normal;clustered_events	ECNT=73;HCNT=1;MAX_ED=208;MIN_ED=1;NLOD=236.48;TLOD=26.22	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:868,12:0.013:2:10:0.833:0|1:75669198_G_A:29554,362:427:441	0/0:983,18:0.017:6:12:0.667:0|1:75669198_G_A:33919,547:505:478
chr3	75669258	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=73;HCNT=41;MAX_ED=208;MIN_ED=1;NLOD=94.60;TLOD=143.46	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:855,48:0.054:19:29:0.604:0|1:75669258_C_T:28520,1582:416:439	0/0:976,50:0.050:24:26:0.520:0|1:75669258_C_T:32909,1656:503:473
chr3	75669262	.	G	A	.	alt_allele_in_normal;clustered_events;triallelic_site	ECNT=73;HCNT=41;MAX_ED=208;MIN_ED=1;NLOD=152.88;TLOD=112.20	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:939,42:0.021:18:24:0.429:0|1:75669258_C_T:28400,1359:453:484	0/0:1048,46:0.021:23:23:0.500:0|1:75669258_C_T:31989,1510:540:501
chr3	75669264	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=73;HCNT=1;MAX_ED=208;MIN_ED=1;NLOD=307.78;TLOD=25.24	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:1055,12:0.011:2:10:0.167:0|1:75669198_G_A:36117,399:516:539	0/0:1164,15:0.012:5:10:0.333:0|1:75669198_G_A:39962,496:604:560
chr3	75669265	.	C	A	.	alt_allele_in_normal;clustered_events	ECNT=73;HCNT=2;MAX_ED=208;MIN_ED=1;NLOD=227.69;TLOD=95.56	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1047,40:0.032:18:22:0.550:35123,1284:517:530	0/0:1180,35:0.028:17:18:0.514:39870,1095:616:564
chr3	75669266	.	C	A	.	alt_allele_in_normal;clustered_events;triallelic_site	ECNT=73;HCNT=2;MAX_ED=208;MIN_ED=1;NLOD=146.52;TLOD=95.62	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1038,43:0.020:19:24:0.558:34585,1386:511:527	0/0:1162,58:0.023:35:23:0.397:39092,1884:594:568
chr3	75669269	.	T	G	.	alt_allele_in_normal;clustered_events	ECNT=73;HCNT=1;MAX_ED=208;MIN_ED=1;NLOD=301.91;TLOD=56.44	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:1188,29:0.019:16:13:0.552:0|1:75669203_G_A:38370,1034:592:596	0/0:1305,21:0.015:13:8:0.619:0|1:75669203_G_A:42548,754:670:635
chr3	75669270	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=73;HCNT=1;MAX_ED=208;MIN_ED=1;NLOD=335.83;TLOD=24.49	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:1236,12:9.368e-03:4:8:0.333:0|1:75669270_G_A:43163,394:621:615	0/0:1337,15:0.011:10:5:0.667:0|1:75669270_G_A:47141,486:691:646
chr3	75669273	.	A	G	.	alt_allele_in_normal;clustered_events;triallelic_site	ECNT=73;HCNT=1;MAX_ED=208;MIN_ED=1;NLOD=342.76;TLOD=23.37	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:1302,12:4.608e-03:4:8:0.667:0|1:75669270_G_A:40908,420:644:632	0/0:1341,15:5.384e-03:10:5:0.333:0|1:75669270_G_A:42373,526:669:644
chr3	75669274	.	A	T	.	alt_allele_in_normal;clustered_events	ECNT=73;HCNT=1;MAX_ED=208;MIN_ED=1;NLOD=361.72;TLOD=24.13	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:1354,12:8.746e-03:4:8:0.667:0|1:75669270_G_A:45067,375:691:663	0/0:1427,15:0.010:10:5:0.333:0|1:75669270_G_A:47256,454:730:697
chr3	75669275	.	G	C	.	alt_allele_in_normal;clustered_events	ECNT=73;HCNT=1;MAX_ED=208;MIN_ED=1;NLOD=386.93;TLOD=12.41	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:1381,6:5.047e-03:2:4:0.333:0|1:75669198_G_A:47553,188:707:674	0/0:1463,12:8.043e-03:3:9:0.250:0|1:75669198_G_A:50551,347:758:705
chr3	75669280	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=73;HCNT=3;MAX_ED=208;MIN_ED=1;NLOD=248.74;TLOD=69.85	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:1383,68:0.049:37:31:0.544:0|1:75669189_G_T:42343,2143:712:671	0/0:1451,71:0.048:27:44:0.380:0|1:75669189_G_T:44072,2177:757:694
chr3	75669281	.	C	A	.	alt_allele_in_normal;clustered_events	ECNT=73;HCNT=41;MAX_ED=208;MIN_ED=1;NLOD=297.39;TLOD=74.28	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:1430,22:0.027:10:12:0.545:0|1:75669258_C_T:49353,721:742:688	0/0:1498,32:0.029:19:13:0.406:0|1:75669258_C_T:51524,945:767:731
chr3	75669287	.	A	G	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=73;HCNT=3;MAX_ED=208;MIN_ED=1;NLOD=455.02;TLOD=5.89	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:1621,4:2.520e-03:0:4:1.00:0|1:75669287_A_G:52815,136:843:778	0/0:1651,4:3.014e-03:3:1:0.250:0|1:75669287_A_G:54040,137:854:797
chr3	75669288	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=73;HCNT=2;MAX_ED=208;MIN_ED=1;NLOD=350.43;TLOD=16.40	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:1644,7:5.668e-03:3:4:0.429:0|1:75669288_G_A:56641,233:853:791	0/0:1654,28:0.017:16:12:0.571:0|1:75669288_G_A:57443,936:859:795
chr3	75669293	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=73;HCNT=1;MAX_ED=208;MIN_ED=1;NLOD=446.00;TLOD=23.17	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:1698,12:7.268e-03:4:8:0.667:0|1:75669270_G_A:54606,395:888:810	0/0:1746,15:8.571e-03:10:5:0.333:0|1:75669270_G_A:56984,499:905:841
chr3	75669295	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=73;HCNT=2;MAX_ED=208;MIN_ED=1;NLOD=294.27;TLOD=125.22	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:1678,65:0.038:27:38:0.585:0|1:75669295_C_T:57420,2031:887:791	0/0:1738,56:0.031:35:21:0.375:0|1:75669295_C_T:59763,1771:899:839
chr3	75669296	.	C	G	.	alt_allele_in_normal;clustered_events;triallelic_site	ECNT=73;HCNT=2;MAX_ED=208;MIN_ED=1;NLOD=288.06;TLOD=113.73	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:1683,65:0.013:27:38:0.585:0|1:75669295_C_T:51882,2241:879:781	0/0:1711,56:0.010:35:21:0.375:0|1:75669295_C_T:53424,1957:866:815
chr3	75669297	.	G	A	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=73;HCNT=3;MAX_ED=208;MIN_ED=1;NLOD=515.22;TLOD=5.73	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:1790,4:2.298e-03:0:4:0.00:0|1:75669287_A_G:56227,124:939:851	0/0:1836,4:2.710e-03:3:1:0.750:0|1:75669287_A_G:57442,124:950:886
chr3	75669298	.	C	A	.	alt_allele_in_normal;clustered_events	ECNT=73;HCNT=2;MAX_ED=208;MIN_ED=1;NLOD=418.17;TLOD=21.86	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:1813,12:3.425e-03:6:6:0.500:0|1:75669288_G_A:62164,382:948:865	0/0:1846,29:7.291e-03:18:11:0.379:0|1:75669288_G_A:63682,939:955:890
chr3	75669302	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=73;HCNT=5;MAX_ED=208;MIN_ED=1;NLOD=446.42;TLOD=38.88	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1846,30:0.014:16:14:0.533:62882,1002:967:879	0/0:1921,34:0.016:16:18:0.471:66189,1146:995:926
chr3	75669306	.	G	C	.	alt_allele_in_normal;clustered_events	ECNT=73;HCNT=3;MAX_ED=208;MIN_ED=1;NLOD=396.63;TLOD=53.95	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:1891,29:0.016:11:18:0.379:0|1:75669306_G_C:66631,1008:994:897	0/0:1957,43:0.022:26:17:0.605:0|1:75669306_G_C:69257,1511:1000:957
chr3	75669308	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=73;HCNT=5;MAX_ED=208;MIN_ED=1;NLOD=427.60;TLOD=30.96	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1893,16:4.462e-03:6:10:0.375:65205,519:989:893	0/0:1960,33:8.230e-03:21:12:0.636:67678,1080:997:949
chr3	75669314	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=73;HCNT=3;MAX_ED=208;MIN_ED=1;NLOD=455.45;TLOD=9.58	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1851,6:3.356e-03:3:3:0.500:64229,193:965:886	0/0:1972,25:0.013:15:10:0.400:68900,834:1006:966
chr3	75669321	.	A	G	.	alt_allele_in_normal;clustered_events	ECNT=73;HCNT=7;MAX_ED=208;MIN_ED=1;NLOD=348.37;TLOD=72.84	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:1710,39:0.021:20:19:0.487:0|1:75669321_A_G:53864,1342:891:819	0/0:1858,48:0.025:22:26:0.542:0|1:75669321_A_G:59072,1650:957:901
chr3	75669323	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=73;HCNT=39;MAX_ED=208;MIN_ED=1;NLOD=71.75;TLOD=305.24	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:1585,128:0.077:58:70:0.453:0|1:75669323_G_A:50120,3973:837:748	0/0:1784,115:0.064:54:61:0.470:0|1:75669323_G_A:56474,3499:924:860
chr3	75669325	.	G	T	.	alt_allele_in_normal;clustered_events	ECNT=73;HCNT=7;MAX_ED=208;MIN_ED=1;NLOD=334.45;TLOD=67.90	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:1652,37:0.020:19:18:0.514:0|1:75669321_A_G:56033,1025:864:788	0/0:1817,46:0.025:21:25:0.457:0|1:75669321_A_G:62013,1325:933:884
chr3	75669331	.	C	G	.	alt_allele_in_normal;clustered_events	ECNT=73;HCNT=3;MAX_ED=208;MIN_ED=1;NLOD=257.49;TLOD=63.93	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:1393,27:0.012:15:12:0.444:0|1:75669306_G_C:36714,860:626:567	0/0:1522,43:0.015:27:16:0.372:0|1:75669306_G_C:42238,1408:691:668
chr3	75669332	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=73;HCNT=20;MAX_ED=208;MIN_ED=1;NLOD=73.28;TLOD=153.59	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1434,86:0.055:44:42:0.512:46106,2744:764:670	0/0:1602,113:0.069:69:44:0.611:51591,3683:808:794
chr3	75669337	.	C	G	.	alt_allele_in_normal;clustered_events	ECNT=73;HCNT=39;MAX_ED=208;MIN_ED=1;NLOD=280.43;TLOD=151.15	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:1364,52:0.045:23:29:0.558:0|1:75669323_G_A:46137,1744:748:616	0/0:1573,40:0.028:12:28:0.700:0|1:75669323_G_A:54094,1300:807:766
chr3	75669339	.	A	G	.	alt_allele_in_normal;clustered_events	ECNT=73;HCNT=7;MAX_ED=208;MIN_ED=1;NLOD=275.36;TLOD=55.88	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:1324,22:0.019:12:10:0.455:0|1:75669321_A_G:43187,625:723:601	0/0:1509,36:0.024:17:19:0.528:0|1:75669321_A_G:49441,968:764:745
chr3	75669345	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=73;HCNT=7;MAX_ED=208;MIN_ED=1;NLOD=247.29;TLOD=47.35	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:1086,17:9.325e-03:9:8:0.471:0|1:75669321_A_G:37892,501:589:497	0/0:1306,27:0.012:12:15:0.556:0|1:75669321_A_G:46341,718:666:640
chr3	75669350	.	C	T	.	alt_allele_in_normal;clustered_events;triallelic_site	ECNT=73;HCNT=3;MAX_ED=208;MIN_ED=1;NLOD=226.52;TLOD=59.95	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:876,21:0.014:12:9:0.429:0|1:75669306_G_C:30213,714:474:389	0/0:1143,24:0.012:14:10:0.417:0|1:75669306_G_C:39248,807:579:544
chr3	75669352	.	G	C	.	alt_allele_in_normal;clustered_events	ECNT=73;HCNT=17;MAX_ED=208;MIN_ED=1;NLOD=153.27;TLOD=47.82	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:862,16:0.026:9:7:0.563:28918,559:467:395	0/0:1105,35:0.037:24:11:0.686:37611,1211:559:546
chr3	75669353	.	G	C	.	alt_allele_in_normal;clustered_events;t_lod_fstar;triallelic_site	ECNT=73;HCNT=3;MAX_ED=208;MIN_ED=1;NLOD=299.21;TLOD=4.26	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:843,4:1.717e-03:3:1:0.750:0|1:75669353_G_C:28489,141:453:386	0/0:1099,2:9.017e-04:1:1:0.500:0|1:75669353_G_C:37246,71:552:539
chr3	75669364	.	G	C	.	alt_allele_in_normal;clustered_events	ECNT=73;HCNT=3;MAX_ED=208;MIN_ED=1;NLOD=243.46;TLOD=8.95	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:614,6:8.850e-03:4:2:0.667:0|1:75669353_G_C:20435,211:328:286	0/0:879,3:3.202e-03:2:1:0.667:0|1:75669353_G_C:29513,109:441:438
chr3	75669366	.	A	C	.	alt_allele_in_normal;clustered_events	ECNT=73;HCNT=3;MAX_ED=208;MIN_ED=1;NLOD=128.92;TLOD=76.30	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:566,28:0.045:13:15:0.536:0|1:75669306_G_C:18692,808:305:261	0/0:836,27:0.032:15:12:0.444:0|1:75669306_G_C:27414,763:418:418
chr3	75669370	.	C	A	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=73;HCNT=4;MAX_ED=208;MIN_ED=1;NLOD=144.31;TLOD=5.26	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:497,2:2.915e-03:2:0:0.00:0|1:75669370_C_A:16646,62:250:244	0/0:659,8:6.701e-03:4:4:0.500:0|1:75669370_C_A:22169,252:321:331
chr3	75669371	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=73;HCNT=1;MAX_ED=208;MIN_ED=1;NLOD=15.47;TLOD=103.55	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:370,55:0.042:29:26:0.473:0|1:75669371_C_T:12669,1719:201:169	0/0:564,58:0.031:28:30:0.517:0|1:75669371_C_T:19426,1750:282:281
chr3	75669374	.	G	T	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=73;HCNT=2;MAX_ED=208;MIN_ED=1;NLOD=143.73;TLOD=5.97	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:402,6:6.349e-03:5:1:0.833:13441,182:211:191	0/0:622,14:9.873e-03:9:5:0.643:20651,446:309:313
chr3	75669380	.	G	A	.	alt_allele_in_normal;clustered_events;triallelic_site	ECNT=73;HCNT=1;MAX_ED=208;MIN_ED=1;NLOD=57.56;TLOD=84.38	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:328,29:0.049:16:13:0.552:0|1:75669371_C_T:10549,942:167:150	0/0:519,26:0.027:9:17:0.346:0|1:75669371_C_T:16854,849:264:247
chr3	75669383	.	A	T	.	alt_allele_in_normal;clustered_events	ECNT=73;HCNT=3;MAX_ED=208;MIN_ED=1;NLOD=43.71;TLOD=79.07	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:332,26:0.070:14:12:0.462:0|1:75669306_G_C:10259,869:183:149	0/0:514,25:0.044:15:10:0.400:0|1:75669306_G_C:15719,816:260:254
chr3	75669384	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=73;HCNT=3;MAX_ED=208;MIN_ED=1;NLOD=43.41;TLOD=79.30	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:331,26:0.072:14:12:0.462:0|1:75669306_G_C:11545,806:180:151	0/0:512,25:0.046:15:10:0.400:0|1:75669306_G_C:18016,755:259:253
chr3	75669387	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=73;HCNT=4;MAX_ED=208;MIN_ED=1;NLOD=100.71;TLOD=13.69	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:341,6:0.016:6:0:1.00:0|1:75669370_C_A:11499,177:183:158	0/0:502,11:0.022:7:4:0.636:0|1:75669370_C_A:16846,320:262:240
chr3	75669390	.	G	T	.	alt_allele_in_normal;clustered_events	ECNT=73;HCNT=2;MAX_ED=208;MIN_ED=1;NLOD=46.60;TLOD=47.15	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:318,16:0.050:11:5:0.688:0|1:75669390_G_T:10604,512:173:145	0/0:470,22:0.043:12:10:0.545:0|1:75669390_G_T:15708,711:252:218
chr3	75669395	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=73;HCNT=4;MAX_ED=208;MIN_ED=1;NLOD=71.52;TLOD=14.08	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:300,6:0.019:6:0:1.00:0|1:75669370_C_A:10009,195:163:137	0/0:438,13:0.028:8:5:0.615:0|1:75669370_C_A:14583,423:229:209
chr3	75669396	.	G	T	.	alt_allele_in_normal;clustered_events	ECNT=73;HCNT=3;MAX_ED=208;MIN_ED=1;NLOD=27.71;TLOD=71.33	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:270,24:0.077:15:9:0.625:0|1:75669306_G_C:9179,771:147:123	0/0:414,22:0.050:13:9:0.591:0|1:75669306_G_C:13988,703:218:196
chr3	75669397	.	C	A	.	alt_allele_in_normal;clustered_events;germline_risk	ECNT=73;HCNT=2;MAX_ED=208;MIN_ED=1;NLOD=2.05;TLOD=48.99	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:192,17:0.039:12:5:0.294:0|1:75669390_G_T:5450,571:107:84	0/0:298,22:0.033:12:10:0.455:0|1:75669390_G_T:8318,726:161:135
chr3	75669493	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=12;HCNT=1;MAX_ED=68;MIN_ED=6;NLOD=8.81;TLOD=13.59	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:31,5:0.135:3:2:0.400:0|1:75669493_C_T:989,161:19:12	0/0:62,3:0.045:2:1:0.333:0|1:75669493_C_T:1870,95:31:31
chr3	75669499	.	TTCCCGCATCCCACGTGCCCTGCGCGCCTGGGGCTCTCCCACAG	T	.	alt_allele_in_normal;clustered_events	ECNT=12;HCNT=3;MAX_ED=68;MIN_ED=6;NLOD=4.31;TLOD=10.31	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:85,3:0.043:1:2:.:2657,96:46:39	0/0:124,6:0.064:3:3:.:3817,190:70:54
chr3	75669524	.	G	T	.	alt_allele_in_normal;clustered_events;germline_risk	ECNT=12;HCNT=9;MAX_ED=68;MIN_ED=6;NLOD=2.09;TLOD=8.06	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:39,2:0.065:1:1:0.500:1270,70:22:17	0/0:58,5:0.074:3:2:0.600:1920,149:35:23
chr3	75669530	.	G	A	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=12;HCNT=12;MAX_ED=68;MIN_ED=6;NLOD=14.78;TLOD=5.22	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:52,2:0.034:1:1:0.500:1704,65:27:25	0/0:76,2:0.024:1:1:0.500:2501,68:44:32
chr3	75669541	.	AG	A	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=12;HCNT=3;MAX_ED=68;MIN_ED=6;NLOD=14.49;RPA=5,4;RU=G;STR;TLOD=4.92	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:64,2:0.015:1:1:.:2003,65:31:32	0/0:92,3:0.015:3:0:.:2916,103:49:43
chr3	75669544	.	G	T	.	alt_allele_in_normal;clustered_events	ECNT=12;HCNT=12;MAX_ED=68;MIN_ED=6;NLOD=10.85;TLOD=8.08	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:68,3:0.041:1:2:0.333:2267,98:36:32	0/0:100,7:0.064:4:3:0.571:3338,227:53:47
chr3	75669551	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=12;HCNT=2;MAX_ED=68;MIN_ED=6;NLOD=27.18;TLOD=7.30	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:83,3:0.012:2:1:0.333:2419,98:44:39	0/0:116,3:7.958e-03:1:2:0.667:3335,94:61:55
chr3	75669552	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=12;HCNT=14;MAX_ED=68;MIN_ED=6;NLOD=11.44;TLOD=12.68	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:83,3:0.057:2:1:0.667:2704,87:44:39	0/0:119,6:0.045:6:0:1.00:3838,190:57:62
chr3	75669554	.	G	T	.	alt_allele_in_normal;clustered_events	ECNT=12;HCNT=3;MAX_ED=68;MIN_ED=6;NLOD=21.17;TLOD=13.97	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:87,5:0.052:1:4:0.200:2968,154:49:38	0/0:127,5:0.033:5:0:1.00:4285,161:60:67
chr3	75669556	.	G	T	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=12;HCNT=1;MAX_ED=68;MIN_ED=6;NLOD=31.35;TLOD=4.75	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:98,2:0.020:1:1:0.500:0|1:75669556_G_T:3228,64:54:44	0/0:145,3:0.019:0:3:0.00:0|1:75669556_G_T:4867,102:78:67
chr3	75669560	.	G	C	.	alt_allele_in_normal;clustered_events;t_lod_fstar;triallelic_site	ECNT=12;HCNT=1;MAX_ED=68;MIN_ED=6;NLOD=30.15;TLOD=4.37	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:104,2:6.689e-03:1:1:0.500:0|1:75669556_G_T:3439,57:56:48	0/0:148,4:6.711e-03:0:4:0.00:0|1:75669556_G_T:5010,128:76:72
chr3	75669561	.	G	T	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=12;HCNT=1;MAX_ED=68;MIN_ED=6;NLOD=36.15;TLOD=4.71	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:108,2:0.019:0:2:0.00:0|1:75669493_C_T:3549,65:58:50	0/0:156,2:0.013:1:1:0.500:0|1:75669493_C_T:5284,64:80:76
chr3	78651688	rs58872086	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.41;TLOD=35.91	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:3,10:0.769:6:4:0.600:109,342:3:0	0/0:8,0:0.00:0:0:.:276,0:6:2
chr3	87630680	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.31;TLOD=4.19	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:27,2:0.071:1:1:0.500:917,64:15:12	0/0:11,0:0.00:0:0:.:373,0:7:4
chr3	88317270	rs1457999	G	A	.	germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=5.42;TLOD=28.61	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:27,12:0.323:8:4:0.667:922,388:13:14	0/0:20,0:0.00:0:0:.:678,0:6:14
chr3	90257406	.	GC	G	.	PASS	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.61;TLOD=39.27	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:11,12:0.522:6:6:.:352,417:6:5	0/0:13,0:0.00:0:0:.:452,0:6:7
chr3	93931664	rs6803590	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=12.90	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,4:0.500:2:2:0.500:141,134:3:1	0/0:10,0:0.00:0:0:.:354,0:3:7
chr3	95171984	.	G	C	.	alt_allele_in_normal;germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.14;TLOD=45.73	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:15,15:0.517:6:9:0.400:489,473:7:8	0/0:18,1:0.056:1:0:1.00:621,28:8:10
chr3	96777406	.	GGT	G	.	alt_allele_in_normal;str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.57;RPA=7,6;RU=GT;STR;TLOD=5.67	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:48,4:0.061:3:1:.:1642,144:30:18	0/0:30,1:0.037:0:1:.:1052,32:10:20
chr3	96987782	.	C	T	.	t_lod_fstar	ECNT=1;HCNT=7;MAX_ED=.;MIN_ED=.;NLOD=39.98;TLOD=4.17	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:262,4:0.012:2:2:0.500:8825,130:151:111	0/0:141,0:0.00:0:0:.:4777,0:86:55
chr3	97648386	.	C	CA	.	PASS	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.01;TLOD=27.18	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:9,8:0.471:4:4:.:308,285:6:3	0/0:10,0:0.00:0:0:.:348,0:4:6
chr3	98521473	.	T	TA	.	germline_risk	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.81;RPA=1,2;RU=A;STR;TLOD=32.17	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:15,11:0.423:4:7:.:462,341:7:8	0/0:6,0:0.00:0:0:.:194,0:5:1
chr3	100339203	.	C	T	.	t_lod_fstar	ECNT=1;HCNT=12;MAX_ED=.;MIN_ED=.;NLOD=29.13;TLOD=4.32	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:208,3:0.017:1:2:0.667:6761,95:112:96	0/0:118,1:9.174e-03:0:1:1.00:3871,31:69:49
chr3	100429741	.	AGAT	A	.	str_contraction	ECNT=1;HCNT=6;MAX_ED=.;MIN_ED=.;NLOD=40.85;RPA=6,5;RU=GAT;STR;TLOD=8.31	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:335,5:0.014:4:1:.:11333,173:179:156	0/0:174,1:6.623e-03:0:1:.:5882,34:95:79
chr3	100744807	.	TTG	T	.	alt_allele_in_normal;str_contraction	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.86;RPA=9,8;RU=TG;STR;TLOD=6.91	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:63,6:0.094:1:5:.:2091,196:38:25	0/0:49,3:0.060:1:2:.:1629,101:30:19
chr3	100902495	.	G	A	.	germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=6.47	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,2:0.667:2:0:1.00:35,65:0:1	0/0:4,0:0.00:0:0:.:132,0:1:3
chr3	101231317	rs348868	A	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=6.92	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,2:0.667:0:2:1.00:34,70:0:1	0/0:5,0:0.00:0:0:.:162,0:3:2
chr3	102438573	rs6784389	A	G	.	PASS	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=10.53;TLOD=67.11	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:23,22:0.488:10:12:0.545:723,770:12:11	0/0:42,0:0.00:0:0:.:1347,0:18:24
chr3	103241004	rs10511208	A	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=18.66	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:8,6:0.462:3:3:0.500:252,197:3:5	0/0:4,0:0.00:0:0:.:129,0:1:3
chr3	105541895	.	G	C	.	germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=19.74	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:8,6:0.429:3:3:0.500:264,210:6:2	0/0:6,0:0.00:0:0:.:215,0:4:2
chr3	108636728	.	CTTT	C	.	germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.79;RPA=12,9;RU=T;STR;TLOD=6.49	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:60,18:0.209:2:0:.:35,72:1:0	0/0:27,3:0.100:0:0:.:0,0:0:0
chr3	108920272	rs2715688	A	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=22.45	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:5,8:0.615:4:4:0.500:160,224:4:1	0/0:7,0:0.00:0:0:.:227,0:3:4
chr3	108959155	rs2197738	G	A	.	germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=37.85	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:17,12:0.444:5:7:0.417:585,402:12:5	0/0:6,0:0.00:0:0:.:217,0:5:1
chr3	109334087	rs7642495	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=23.41	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:3,8:0.727:2:6:0.250:105,221:3:0	0/0:4,0:0.00:0:0:.:119,0:2:2
chr3	111966500	.	CATGT	C	.	PASS	ECNT=1;HCNT=9;MAX_ED=.;MIN_ED=.;NLOD=3.85;TLOD=8.48	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:18,3:0.051:2:1:.:495,97:9:6	0/0:13,0:0.00:0:0:.:290,0:6:3
chr3	111986428	.	G	GTTTGT	.	PASS	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.99;RPA=4,5;RU=TTTGT;STR;TLOD=21.32	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:10,6:0.375:2:4:.:324,208:5:5	0/0:13,0:0.00:0:0:.:454,0:8:5
chr3	112168945	rs76007436	C	A	.	alt_allele_in_normal	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=3.75;TLOD=156.14	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:46,57:0.543:27:30:0.526:1625,1849:25:21	0/0:66,4:0.065:2:2:0.500:2282,130:28:38
chr3	112524788	rs2933141	T	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.61;TLOD=58.07	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:6,20:0.739:13:7:0.650:195,662:3:3	0/0:12,0:0.00:0:0:.:412,0:6:6
chr3	112544012	rs3736270	A	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.31;TLOD=43.00	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:11,13:0.542:7:6:0.462:376,440:8:3	0/0:11,0:0.00:0:0:.:376,0:3:8
chr3	113379399	.	TTCC	T	.	alt_allele_in_normal;str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.80;RPA=5,4;RU=TCC;STR;TLOD=5.24	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:57,2:0.035:2:0:.:1880,70:31:26	0/0:31,1:0.032:0:1:.:1043,34:17:14
chr3	119229785	.	C	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.51;TLOD=5.13	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:18,2:0.111:1:1:0.500:605,69:13:5	0/0:15,0:0.00:0:0:.:508,0:4:11
chr3	119382173	.	A	T	.	PASS	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.31;TLOD=28.89	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:5,9:0.643:5:4:0.444:168,287:1:4	0/0:11,0:0.00:0:0:.:366,0:5:6
chr3	119810266	rs3732356	G	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.41;TLOD=14.02	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,4:0.800:1:3:0.250:34,132:1:0	0/0:8,0:0.00:0:0:.:257,0:3:5
chr3	119814886	rs6785049	G	A	.	clustered_events;germline_risk	DB;ECNT=2;HCNT=2;MAX_ED=40;MIN_ED=40;NLOD=4.51;TLOD=34.61	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:18,12:0.414:7:5:0.583:498,374:10:8	0/0:15,0:0.00:0:0:.:425,0:9:6
chr3	119814926	rs6797879	T	C	.	clustered_events	DB;ECNT=2;HCNT=2;MAX_ED=40;MIN_ED=40;NLOD=5.72;TLOD=58.99	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:27,21:0.432:12:9:0.571:838,700:16:11	0/0:21,0:0.00:0:0:.:654,0:12:9
chr3	119863332	.	C	G	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.42;TLOD=4.65	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:32,2:0.059:0:2:1.00:1089,70:20:12	0/0:18,0:0.00:0:0:.:645,0:14:4
chr3	121781632	.	TACACACAC	T	.	germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.777;RPA=15,11;RU=AC;STR;TLOD=6.58	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:16,5:0.217:2:0:.:0,62:0:0	0/0:11,3:0.200:0:0:.:0,0:0:0
chr3	122414474	rs6777596	C	T	.	PASS	DB;ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=5.67;TLOD=40.42	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:18,13:0.419:6:7:0.538:601,434:12:6	0/0:19,0:0.00:0:0:.:603,0:10:9
chr3	122461164	rs56074178	C	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.71;TLOD=23.84	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:6,7:0.538:5:2:0.286:181,244:4:2	0/0:9,0:0.00:0:0:.:310,0:4:5
chr3	122535922	rs3817040	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.80;TLOD=6.42	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,2:0.667:1:1:0.500:29,63:0:1	0/0:6,0:0.00:0:0:.:167,0:4:2
chr3	122540898	.	G	GTTTTTTTTT	.	t_lod_fstar;triallelic_site	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=5.38;RPA=10,19;RU=T;STR;TLOD=5.78	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:47,8:0.030:0:1:.:1041,2:20:13	0/0:32,3:0.017:0:0:.:924,0:16:12
chr3	122550533	rs1979853	A	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=24.13	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:8,7:0.467:3:4:0.571:260,253:3:5	0/0:5,0:0.00:0:0:.:167,0:3:2
chr3	123161849	.	TTC	T	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.40;RPA=8,7;RU=TC;STR;TLOD=5.97	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:16,3:0.158:1:2:.:513,100:9:7	0/0:18,0:0.00:0:0:.:592,0:5:13
chr3	123528566	rs17363249	G	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=14.75	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,4:0.667:4:0:1.00:71,145:1:1	0/0:5,0:0.00:0:0:.:173,0:2:3
chr3	123692742	rs40305	G	A	.	alt_allele_in_normal	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.97;TLOD=118.15	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:59,42:0.438:16:26:0.381:1822,1355:31:28	0/0:49,3:0.063:2:1:0.667:1563,100:28:21
chr3	125453730	.	AAAAT	A	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=6.30;RPA=5,4;RU=AAAT;STR;TLOD=6.14	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:19,2:0.095:0:2:.:608,66:10:9	0/0:21,0:0.00:0:0:.:682,0:15:6
chr3	125930778	rs7618335	C	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=15.60	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,5:0.556:2:3:0.600:141,169:1:3	0/0:4,0:0.00:0:0:.:145,0:3:1
chr3	126022936	.	CAG	C	.	str_contraction	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=33.14;RPA=6,5;RU=AG;STR;TLOD=7.17	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:137,5:0.031:1:4:.:4827,181:62:75	0/0:123,0:0.00:0:0:.:4434,0:56:67
chr3	126023058	rs2270984	A	G	.	clustered_events;multi_event_alt_allele_in_normal	DB;ECNT=2;HCNT=1;MAX_ED=24;MIN_ED=24;NLOD=6.03;TLOD=72.36	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:11,19:0.645:9:10:0.526:0|1:126023058_A_G:359,639:7:4	0/0:34,1:0.029:0:1:1.00:0|1:126023058_A_G:1093,34:18:16
chr3	126023082	rs2270983	T	G	.	alt_allele_in_normal;clustered_events;germline_risk	DB;ECNT=2;HCNT=1;MAX_ED=24;MIN_ED=24;NLOD=1.22;TLOD=41.62	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:7,10:0.524:3:7:0.300:0|1:126023058_A_G:226,344:4:3	0/0:17,1:0.053:0:1:0.00:0|1:126023058_A_G:532,34:8:9
chr3	126026590	rs7646705	C	T	.	germline_risk;t_lod_fstar	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=5.99	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:3,2:0.400:0:2:1.00:104,65:1:2	0/0:5,0:0.00:0:0:.:166,0:4:1
chr3	126414037	rs4679240	G	A	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=5.09;TLOD=357.57	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:126,122:0.492:74:48:0.607:3591,3833:58:68	0/0:175,14:0.075:6:8:0.429:4939,444:81:94
chr3	126416227	.	C	CCGCGTCCCCGGCCTCAGGTCCG	.	PASS	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.15;TLOD=34.64	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,2:0.889:2:0:.:33,68:0:1	0/0:17,0:0.00:0:0:.:567,0:2:15
chr3	126499324	.	G	A	.	alt_allele_in_normal;germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.94;TLOD=34.61	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:18,14:0.462:6:8:0.429:509,429:6:12	0/0:19,1:0.053:0:1:0.00:582,33:9:10
chr3	126914576	rs2303994	C	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.12;TLOD=20.14	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:12,8:0.400:6:2:0.250:391,223:5:7	0/0:17,0:0.00:0:0:.:576,0:10:7
chr3	127018425	rs4679323	C	A	.	alt_allele_in_normal	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=13.70;TLOD=133.45	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:45,51:0.516:27:24:0.471:1490,1489:20:25	0/0:84,3:0.038:2:1:0.333:2717,89:50:34
chr3	128481963	rs11708606	G	A	.	PASS	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=7.76;TLOD=103.49	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:17,32:0.667:14:18:0.438:545,1015:10:7	0/0:42,1:0.027:1:0:1.00:1372,29:23:19
chr3	128538371	.	G	A	.	PASS	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.32;TLOD=49.86	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:18,16:0.485:10:6:0.625:625,530:11:7	0/0:24,0:0.00:0:0:.:836,0:5:19
chr3	128573475	.	ATC	A	.	alt_allele_in_normal;germline_risk;str_contraction	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.81;RPA=9,8;RU=TC;STR;TLOD=7.74	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:91,8:0.046:2:4:.:2901,191:41:50	0/0:98,11:0.054:6:4:.:3133,324:51:47
chr3	128842795	rs78543474	T	C	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.25;TLOD=42.54	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:19,17:0.484:6:11:0.353:626,476:13:6	0/0:24,1:0.042:1:0:1.00:785,35:9:15
chr3	128865427	.	T	A	.	alt_allele_in_normal	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=2.28;TLOD=26.61	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:21,10:0.323:5:5:0.500:667,320:7:14	0/0:75,2:0.029:2:0:1.00:2390,58:39:36
chr3	129347529	rs6788552	T	C	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.602;TLOD=43.05	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:14,14:0.500:7:7:0.500:470,448:11:3	0/0:27,2:0.071:1:1:0.500:886,69:14:13
chr3	129347660	rs11708493	G	A	.	PASS	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=11.43;TLOD=63.94	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:35,24:0.396:16:8:0.667:1125,790:24:11	0/0:42,0:0.00:0:0:.:1326,0:28:14
chr3	129556708	.	TGGGGAG	T	.	alt_allele_in_normal;germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.608;TLOD=51.32	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:12,13:0.542:6:7:.:389,424:1:11	0/0:16,1:0.059:1:0:.:516,33:8:8
chr3	129651732	.	CCTG	C	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=15.79;RPA=6,5;RU=CTG;STR;TLOD=5.04	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:80,2:0.028:1:1:.:2754,67:39:41	0/0:79,1:0.015:0:1:.:2716,35:47:32
chr3	131526995	rs6439302	C	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.31;TLOD=17.47	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:6,6:0.545:1:5:0.833:192,179:5:1	0/0:12,0:0.00:0:0:.:406,0:5:7
chr3	132639418	.	T	TG	.	alt_allele_in_normal	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.85;RPA=6,7;RU=G;STR;TLOD=16.99	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:8,8:0.529:4:4:.:271,273:6:2	0/0:30,1:0.032:1:0:.:978,34:16:14
chr3	132722299	.	C	G	.	alt_allele_in_normal	ECNT=1;HCNT=3;MAX_ED=.;MIN_ED=.;NLOD=4.20;TLOD=51.61	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:17,20:0.533:11:9:0.450:542,664:8:9	0/0:29,1:0.037:0:1:1.00:868,34:15:14
chr3	133587834	rs34062652	G	A	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.97;TLOD=61.30	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:21,20:0.488:8:12:0.400:599,641:12:9	0/0:35,2:0.054:2:0:1.00:966,62:14:21
chr3	133699402	rs9815273	A	C	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=3.20;TLOD=55.27	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:32,20:0.360:14:6:0.300:999,681:22:10	0/0:36,2:0.056:1:1:0.500:1137,70:19:17
chr3	133746509	rs8177187	G	T	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.84;TLOD=21.76	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:9,8:0.467:3:5:0.375:281,254:8:1	0/0:18,2:0.053:0:2:0.00:564,64:7:11
chr3	133758008	rs3811658	C	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.37;TLOD=26.82	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:3,8:0.727:4:4:0.500:97,258:2:1	0/0:18,0:0.00:0:0:.:571,0:12:6
chr3	133761973	rs6762719	A	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.41;TLOD=20.17	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:5,6:0.545:4:2:0.333:152,206:2:3	0/0:8,0:0.00:0:0:.:255,0:3:5
chr3	133944980	.	A	AGT	.	alt_allele_in_normal;germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.42;RPA=5,6;RU=GT;STR;TLOD=63.36	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:17,21:0.564:10:11:.:538,668:8:9	0/0:36,3:0.077:2:1:.:1140,98:20:16
chr3	134437513	rs9847750	A	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.82;TLOD=25.68	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:6,9:0.600:4:5:0.556:183,258:3:3	0/0:15,1:0.063:1:0:0.00:487,4:5:10
chr3	134438421	rs13088645	T	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.01;TLOD=25.32	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:5,8:0.615:7:1:0.875:170,255:3:2	0/0:10,0:0.00:0:0:.:334,0:4:6
chr3	134650874	rs13060869	C	A	.	alt_allele_in_normal	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=6.31;TLOD=50.32	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:20,18:0.471:9:9:0.500:608,589:14:6	0/0:38,1:0.030:1:0:0.00:1175,31:25:13
chr3	134925794	rs635721	G	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.91;TLOD=13.93	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,5:0.667:5:0:1.00:57,170:0:2	0/0:13,0:0.00:0:0:.:376,0:6:7
chr3	135167112	.	A	G	.	t_lod_fstar	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=30.74;TLOD=4.67	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:125,3:0.023:3:0:0.00:4081,94:62:63	0/0:115,1:8.621e-03:1:0:0.00:3719,36:56:59
chr3	135938572	rs7623721	A	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.41;TLOD=16.64	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:7,5:0.417:3:2:0.400:234,178:3:4	0/0:8,0:0.00:0:0:.:268,0:1:7
chr3	136001698	rs9814557	A	G	.	alt_allele_in_normal	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=6.19;TLOD=71.04	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:24,22:0.478:11:11:0.500:778,746:12:12	0/0:43,2:0.044:1:1:0.500:1372,64:20:23
chr3	136001831	rs9872542	T	C	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.21;TLOD=54.97	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:27,19:0.415:7:12:0.368:869,661:15:12	0/0:34,2:0.057:0:2:0.00:1068,64:16:18
chr3	136049390	rs67039922	T	A	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.92;TLOD=87.95	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:26,29:0.537:16:13:0.552:880,904:17:9	0/0:48,3:0.059:1:2:0.333:1635,100:26:22
chr3	136736862	rs9838884	C	T	.	PASS	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=7.51;TLOD=71.90	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:35,25:0.421:11:14:0.560:1117,805:19:16	0/0:36,1:0.027:1:0:0.00:1122,31:16:20
chr3	136900067	rs9867325	G	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.61;TLOD=9.34	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:6,3:0.333:2:1:0.667:209,104:4:2	0/0:15,0:0.00:0:0:.:514,0:7:8
chr3	138161898	.	ATCG	A	.	alt_allele_in_normal	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=18.89;TLOD=10.59	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:112,4:0.037:2:2:.:3580,131:60:52	0/0:102,3:0.022:3:0:.:3292,99:51:51
chr3	138714783	.	TTTTG	T	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=3;MAX_ED=.;MIN_ED=.;NLOD=6.81;RPA=4,3;RU=TTTG;STR;TLOD=5.47	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:42,2:0.045:1:1:.:1418,70:23:19	0/0:37,1:0.026:0:1:.:1249,33:15:22
chr3	138733328	.	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.41;TLOD=16.49	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:3,5:0.625:2:3:0.400:86,164:0:3	0/0:8,0:0.00:0:0:.:232,0:5:3
chr3	138826114	.	C	T	.	germline_risk;t_lod_fstar	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.71;TLOD=5.84	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:5,2:0.286:2:0:0.00:159,67:1:4	0/0:9,0:0.00:0:0:.:294,0:2:7
chr3	139389638	rs113568512	C	T	.	PASS	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.72;TLOD=55.14	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:9,16:0.640:7:9:0.563:315,546:5:4	0/0:19,0:0.00:0:0:.:668,0:9:10
chr3	140566273	rs4683510	T	C	.	germline_risk;t_lod_fstar	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=4.30	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:6,2:0.250:2:0:1.00:191,53:5:1	0/0:4,0:0.00:0:0:.:129,0:2:2
chr3	140902541	.	G	A	.	PASS	ECNT=2;HCNT=6;MAX_ED=1;MIN_ED=1;NLOD=22.31;TLOD=9.60	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:85,4:0.049:1:3:0.250:0|1:140902541_G_A:2953,128:47:38	0/0:77,0:0.00:0:0:.:0|1:140902541_G_A:2666,0:40:37
chr3	140902542	.	G	GAAATATATATATTTCT	.	PASS	ECNT=2;HCNT=6;MAX_ED=1;MIN_ED=1;NLOD=22.31;TLOD=9.59	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:85,3:0.049:0:3:.:0|1:140902541_G_A:2930,107:47:38	0/0:78,0:0.00:0:0:.:0|1:140902541_G_A:2687,0:41:37
chr3	141558809	rs13084444	T	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=18.00	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,5:0.556:3:2:0.600:133,183:3:1	0/0:7,0:0.00:0:0:.:236,0:2:5
chr3	141709022	rs9875298	C	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.41;TLOD=31.96	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,9:0.900:4:5:0.556:31,293:1:0	0/0:8,0:0.00:0:0:.:275,0:3:5
chr3	141913980	rs2288634	A	G	.	germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=18.02	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:8,4:0.385:3:1:0.250:266,135:3:5	0/0:5,0:0.00:0:0:.:167,0:3:2
chr3	141925932	.	G	C	.	germline_risk;t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=5.42	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,2:0.667:0:2:0.00:34,53:0:1	0/0:6,0:0.00:0:0:.:202,0:1:5
chr3	141970246	rs11569249	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.01;TLOD=15.32	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:8,5:0.385:2:3:0.400:282,167:8:0	0/0:10,0:0.00:0:0:.:334,0:4:6
chr3	141993643	.	AT	A	.	PASS	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.61;RPA=2,1;RU=T;STR;TLOD=27.28	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:12,9:0.450:2:7:.:385,290:2:10	0/0:12,0:0.00:0:0:.:399,0:6:6
chr3	142359985	rs79791571	C	A	.	PASS	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.72;TLOD=46.45	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:3,13:0.813:7:6:0.462:107,436:1:2	0/0:19,0:0.00:0:0:.:641,0:8:11
chr3	142364934	.	T	TTA	.	germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.51;TLOD=11.09	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,2:0.600:2:0:.:68,66:2:0	0/0:5,0:0.00:0:0:.:168,0:3:2
chr3	142547597	rs13091637	C	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=17.21	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,5:0.833:3:2:0.400:32,160:0:1	0/0:4,0:0.00:0:0:.:139,0:1:3
chr3	142558523	.	AAAATAAAT	A	.	PASS	ECNT=1;HCNT=10;MAX_ED=.;MIN_ED=.;NLOD=3.30;RPA=9,7;RU=AAAT;STR;TLOD=10.71	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:9,4:0.250:3:0:.:93,101:1:2	0/0:11,0:0.00:0:0:.:251,0:4:4
chr3	142562770	rs2227928	A	G	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.71;TLOD=47.37	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:20,17:0.459:9:8:0.471:656,504:8:12	0/0:37,3:0.077:2:1:0.333:1196,86:16:21
chr3	142669671	.	AATG	A	.	alt_allele_in_normal;germline_risk;str_contraction	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.49;RPA=6,5;RU=ATG;STR;TLOD=55.55	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:5,14:0.737:8:6:.:170,468:2:3	0/0:19,1:0.050:1:0:.:648,34:8:11
chr3	143054896	rs10935479	C	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.41;TLOD=32.71	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:9,12:0.588:5:7:0.583:296,398:5:4	0/0:8,0:0.00:0:0:.:271,0:3:5
chr3	146455349	.	G	A	.	alt_allele_in_normal	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=10.50;TLOD=169.79	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:48,62:0.556:37:25:0.597:1458,1958:19:29	0/0:103,5:0.052:2:3:0.400:3186,160:56:47
chr3	146589584	rs343288	G	A	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.18;TLOD=52.40	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:12,16:0.571:9:7:0.563:434,532:7:5	0/0:29,2:0.067:1:1:0.500:1021,69:13:16
chr3	148742201	rs5186	A	C	.	alt_allele_in_normal	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.13;TLOD=129.47	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:24,40:0.617:21:19:0.475:763,1396:10:14	0/0:57,3:0.051:1:2:0.667:1864,102:25:32
chr3	148996238	rs3772580	C	G	.	PASS	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=8.66;TLOD=58.32	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:28,18:0.391:9:9:0.500:947,632:8:20	0/0:41,1:0.024:0:1:1.00:1398,35:27:14
chr3	148996509	.	CAT	C	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.57;RPA=6,5;RU=AT;STR;TLOD=4.44	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:24,2:0.077:1:1:.:863,70:12:12	0/0:22,0:0.00:0:0:.:801,0:10:12
chr3	150562466	rs4343650	A	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.76;TLOD=11.25	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,4:0.500:2:2:0.500:106,117:3:1	0/0:6,0:0.00:0:0:.:172,0:3:3
chr3	150562658	rs1132979	C	G	.	clustered_events	DB;ECNT=2;HCNT=2;MAX_ED=61;MIN_ED=61;NLOD=5.12;TLOD=46.33	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:13,14:0.519:6:8:0.571:434,478:6:7	0/0:17,0:0.00:0:0:.:610,0:10:7
chr3	150562719	.	GA	G	.	clustered_events;germline_risk	ECNT=2;HCNT=2;MAX_ED=61;MIN_ED=61;NLOD=1.80;RPA=5,4;RU=A;STR;TLOD=14.42	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:7,6:0.462:4:2:.:247,213:3:4	0/0:6,0:0.00:0:0:.:210,0:2:4
chr3	150603228	rs2276759	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.91;TLOD=16.09	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:3,5:0.625:4:1:0.800:104,160:3:0	0/0:13,0:0.00:0:0:.:450,0:8:5
chr3	150941581	.	C	T	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=11.74;TLOD=4.09	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:41,3:0.049:2:1:0.333:1380,98:20:21	0/0:42,0:0.00:0:0:.:1459,0:22:20
chr3	151360428	rs9856118	A	G	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.11;TLOD=154.63	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:58,58:0.509:36:22:0.379:1882,1610:33:25	0/0:96,9:0.087:5:4:0.444:3111,256:58:38
chr3	151372816	rs9855202	G	A	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.84;TLOD=25.85	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:10,8:0.444:4:4:0.500:327,274:6:4	0/0:39,3:0.071:3:0:1.00:1331,94:20:19
chr3	151377207	rs73158000	G	A	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.64;TLOD=44.62	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:10,14:0.583:6:8:0.429:321,450:2:8	0/0:17,1:0.056:1:0:1.00:569,33:6:11
chr3	151388204	rs9289837	C	T	.	alt_allele_in_normal	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.87;TLOD=79.94	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:38,32:0.435:7:25:0.781:1341,1023:16:22	0/0:50,3:0.043:2:1:0.333:1761,96:21:29
chr3	151430325	.	CCAG	C	.	str_contraction	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=25.81;RPA=5,4;RU=CAG;STR;TLOD=10.24	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:105,5:0.042:4:1:.:3478,171:57:48	0/0:113,1:9.901e-03:1:0:.:3839,36:51:62
chr3	151824944	rs62272917	A	C	.	germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=7.33	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,2:0.667:2:0:0.00:30,72:0:1	0/0:5,0:0.00:0:0:.:162,0:2:3
chr3	151881605	rs13079080	C	T	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.15;TLOD=61.83	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:15,20:0.559:9:11:0.550:533,666:8:7	0/0:27,1:0.037:0:1:1.00:948,35:11:16
chr3	152432548	rs6804771	T	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.71;TLOD=9.72	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:3,3:0.500:2:1:0.667:101,101:1:2	0/0:9,0:0.00:0:0:.:303,0:6:3
chr3	154023946	rs11717851	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.91;TLOD=23.31	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,7:0.636:3:4:0.429:124,231:1:3	0/0:14,0:0.00:0:0:.:419,0:9:5
chr3	154024207	rs11718646	C	T	.	clustered_events;germline_risk	DB;ECNT=2;HCNT=2;MAX_ED=81;MIN_ED=81;NLOD=4.21;TLOD=12.83	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:3,4:0.571:3:1:0.250:103,130:2:1	0/0:14,0:0.00:0:0:.:507,0:6:8
chr3	154024288	rs11707232	T	A	.	alt_allele_in_normal;clustered_events;germline_risk	DB;ECNT=2;HCNT=2;MAX_ED=81;MIN_ED=81;NLOD=1.24;TLOD=14.68	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:8,7:0.455:4:3:0.571:266,220:6:2	0/0:16,1:0.063:1:0:1.00:530,31:5:11
chr3	155084043	rs56208271	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.91;TLOD=6.42	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,2:0.667:1:1:0.500:36,63:0:1	0/0:13,0:0.00:0:0:.:466,0:8:5
chr3	155116590	.	GTA	G	.	str_contraction	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.56;RPA=8,7;RU=TA;STR;TLOD=11.95	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:17,6:0.095:3:3:.:487,200:6:8	0/0:9,0:0.00:0:0:.:175,0:3:2
chr3	155168489	rs3736187	T	C	.	alt_allele_in_normal	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.85;TLOD=21.50	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:14,7:0.350:3:4:0.429:442,238:8:6	0/0:26,1:0.038:1:0:1.00:843,35:13:13
chr3	155596507	rs359570	A	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.01;TLOD=13.42	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,4:0.800:1:3:0.750:32,126:0:1	0/0:10,0:0.00:0:0:.:321,0:8:2
chr3	155763820	rs7653384	G	A	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.90;TLOD=26.31	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:15,10:0.429:3:7:0.300:528,319:7:8	0/0:22,1:0.045:1:0:1.00:737,32:13:9
chr3	155936228	rs10804774	C	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.51;TLOD=9.06	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,3:0.429:3:0:0.00:125,97:2:2	0/0:15,0:0.00:0:0:.:503,0:7:8
chr3	156176006	.	C	T	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=11.69;TLOD=4.15	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:39,2:0.053:1:1:0.500:1250,66:22:17	0/0:42,0:0.00:0:0:.:1313,0:22:20
chr3	156694329	rs62276625	C	T	.	germline_risk;t_lod_fstar	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=5.64	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:5,2:0.286:1:1:0.500:173,65:4:1	0/0:5,0:0.00:0:0:.:177,0:3:2
chr3	156714299	.	C	G	.	alt_allele_in_normal	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=5.79;TLOD=66.29	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:30,25:0.472:11:14:0.560:982,708:14:16	0/0:40,2:0.049:0:2:1.00:1345,56:18:22
chr3	156810861	rs116269788	G	C	.	germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=3.31;TLOD=16.49	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:6,5:0.455:3:2:0.600:194,174:2:4	0/0:11,0:0.00:0:0:.:377,0:3:8
chr3	157470589	rs1011060	C	T	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.28;TLOD=57.52	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:19,19:0.500:10:9:0.474:661,599:8:11	0/0:36,2:0.053:0:2:1.00:1263,62:13:23
chr3	160277157	rs10936199	T	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=13.33	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:3,4:0.571:1:3:0.250:91,135:3:0	0/0:4,0:0.00:0:0:.:124,0:2:2
chr3	160277568	rs3737214	A	G	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.95;TLOD=41.71	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:19,16:0.484:11:5:0.313:608,468:11:8	0/0:27,1:0.040:1:0:0.00:883,31:18:9
chr3	160307499	rs6790951	C	T	.	germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=2.41;TLOD=19.05	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:6,6:0.500:3:3:0.500:206,198:2:4	0/0:8,0:0.00:0:0:.:282,0:3:5
chr3	160413411	.	T	A	.	germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=2.71;TLOD=15.14	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:10,5:0.333:2:3:0.400:316,169:4:6	0/0:9,0:0.00:0:0:.:288,0:5:4
chr3	161246483	rs73026976	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.91;TLOD=35.93	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:12,11:0.478:6:5:0.545:383,376:8:4	0/0:15,0:0.00:0:0:.:505,0:10:5
chr3	161326081	rs10936227	T	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.71;TLOD=28.90	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:6,11:0.667:4:7:0.364:198,364:4:2	0/0:11,0:0.00:0:0:.:369,0:8:3
chr3	161429487	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=8;HCNT=16;MAX_ED=45;MIN_ED=4;NLOD=20.26;TLOD=16.36	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:125,6:0.045:4:2:0.333:0|1:161429487_C_T:4319,203:70:55	0/0:184,9:0.051:5:4:0.444:0|1:161429487_C_T:6388,300:106:78
chr3	161429491	.	T	C	.	alt_allele_in_normal;clustered_events	ECNT=8;HCNT=16;MAX_ED=45;MIN_ED=4;NLOD=17.54;TLOD=16.87	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:123,6:0.026:4:2:0.667:0|1:161429487_C_T:3928,215:66:53	0/0:179,10:0.028:5:4:0.556:0|1:161429487_C_T:5738,319:97:77
chr3	161429497	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=8;HCNT=32;MAX_ED=45;MIN_ED=4;NLOD=13.02;TLOD=17.53	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:125,7:0.052:5:2:0.286:4262,224:71:54	0/0:190,12:0.059:7:5:0.417:6399,374:109:81
chr3	161429513	.	A	G	.	alt_allele_in_normal;clustered_events	ECNT=8;HCNT=16;MAX_ED=45;MIN_ED=4;NLOD=11.25;TLOD=19.41	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:135,10:0.050:7:3:0.300:0|1:161429513_A_G:4481,358:84:51	0/0:193,15:0.072:10:5:0.333:0|1:161429513_A_G:6182,528:110:83
chr3	161429518	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=8;HCNT=16;MAX_ED=45;MIN_ED=4;NLOD=16.35;TLOD=19.41	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:148,10:0.050:7:3:0.700:0|1:161429513_A_G:5133,306:89:59	0/0:212,14:0.065:10:4:0.714:0|1:161429513_A_G:7124,431:121:91
chr3	161429520	.	CT	C	.	alt_allele_in_normal;clustered_events	ECNT=8;HCNT=16;MAX_ED=45;MIN_ED=4;NLOD=15.74;RPA=2,1;RU=T;STR;TLOD=19.32	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:148,10:0.048:7:3:.:0|1:161429513_A_G:5034,354:89:59	0/0:213,14:0.066:10:4:.:0|1:161429513_A_G:7232,488:121:92
chr3	161429525	.	T	G	.	alt_allele_in_normal;clustered_events	ECNT=8;HCNT=16;MAX_ED=45;MIN_ED=4;NLOD=16.65;TLOD=19.30	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:161,10:0.048:7:3:0.700:0|1:161429513_A_G:5282,348:95:66	0/0:211,14:0.066:10:4:0.714:0|1:161429513_A_G:6881,502:120:91
chr3	161429532	.	T	C	.	alt_allele_in_normal;clustered_events	ECNT=8;HCNT=16;MAX_ED=45;MIN_ED=4;NLOD=16.34;TLOD=19.35	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:160,8:0.049:5:3:0.625:0|1:161429513_A_G:5169,285:95:65	0/0:205,13:0.067:9:4:0.692:0|1:161429513_A_G:6500,473:111:94
chr3	167794866	.	G	T	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=7.22;TLOD=4.34	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:31,2:0.065:2:0:1.00:1053,66:16:15	0/0:24,0:0.00:0:0:.:819,0:8:16
chr3	168027915	rs9861339	A	G	.	alt_allele_in_normal	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.55;TLOD=35.16	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:13,11:0.458:5:6:0.545:434,371:5:8	0/0:30,1:0.032:1:0:0.00:996,33:12:18
chr3	168029853	.	CCTG	C	.	alt_allele_in_normal;str_contraction	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=7.45;RPA=5,4;RU=CTG;STR;TLOD=8.07	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:70,3:0.041:2:1:.:2385,106:42:28	0/0:55,2:0.036:2:0:.:1877,68:35:20
chr3	168043282	rs62273307	A	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.61;TLOD=6.59	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:3,2:0.400:2:0:0.00:102,71:1:2	0/0:12,0:0.00:0:0:.:404,0:4:8
chr3	169903672	rs9681284	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.91;TLOD=20.75	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:11,7:0.389:3:4:0.429:381,228:6:5	0/0:13,0:0.00:0:0:.:450,0:6:7
chr3	170181879	rs16854875	T	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.71;TLOD=24.71	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:3,7:0.700:3:4:0.429:98,244:0:3	0/0:9,0:0.00:0:0:.:288,0:7:2
chr3	170480165	rs989997	T	G	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.34;TLOD=42.13	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:8,13:0.619:4:9:0.308:251,420:5:3	0/0:20,1:0.048:0:1:0.00:612,35:12:8
chr3	170953898	.	CCTG	C	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.30;RPA=4,3;RU=CTG;STR;TLOD=6.06	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:23,2:0.087:0:2:.:756,70:12:11	0/0:24,0:0.00:0:0:.:834,0:14:10
chr3	171161363	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=7.48;TLOD=4.01	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:33,2:0.063:1:1:0.500:1096,63:19:14	0/0:25,0:0.00:0:0:.:802,0:13:12
chr3	172112386	.	CTTG	C	.	alt_allele_in_normal;germline_risk;str_contraction	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.613;RPA=2,1;RU=TTG;STR;TLOD=36.54	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:5,9:0.643:5:4:.:164,305:4:1	0/0:16,1:0.059:0:1:.:534,35:6:10
chr3	172603872	.	GCAT	G	.	alt_allele_in_normal;str_contraction;t_lod_fstar	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=14.88;RPA=5,4;RU=CAT;STR;TLOD=4.59	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:125,2:0.017:0:2:.:4195,69:69:56	0/0:94,3:0.033:2:1:.:3245,103:52:42
chr3	172816638	rs10936738	C	T	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.74;TLOD=12.38	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:8,4:0.364:1:3:0.750:283,136:3:5	0/0:22,1:0.045:1:0:0.00:741,34:9:13
chr3	172976821	rs114023683	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.80;TLOD=13.15	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,4:0.667:2:2:0.500:58,129:2:0	0/0:6,0:0.00:0:0:.:164,0:3:3
chr3	174377688	rs2090714	T	C	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.45;TLOD=51.99	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:13,18:0.600:8:10:0.444:438,522:7:6	0/0:33,1:0.032:0:1:0.00:1047,34:15:18
chr3	177038442	rs77478951	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.96;TLOD=12.92	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:5,4:0.444:3:1:0.750:171,137:4:1	0/0:10,0:0.00:0:0:.:322,0:6:4
chr3	177049879	.	GTTACTA	G	.	clustered_events	ECNT=2;HCNT=2;MAX_ED=6;MIN_ED=6;NLOD=2.41;TLOD=11.20	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:5,2:0.375:0:2:.:0|1:177049879_GTTACTA_G:135,73:3:2	0/0:8,0:0.00:0:0:.:0|1:177049879_GTTACTA_G:272,0:4:4
chr3	177049885	.	A	AGG	.	clustered_events	ECNT=2;HCNT=2;MAX_ED=6;MIN_ED=6;NLOD=2.41;RPA=1,3;RU=G;STR;TLOD=11.42	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:4,2:0.429:0:2:.:0|1:177049879_GTTACTA_G:96,70:2:2	0/0:8,0:0.00:0:0:.:0|1:177049879_GTTACTA_G:244,0:4:4
chr3	179413864	rs2287212	A	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=26.21	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:8,9:0.529:3:6:0.667:261,284:3:5	0/0:7,0:0.00:0:0:.:236,0:3:4
chr3	179465386	rs36047822	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=15.55	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:5,5:0.500:4:1:0.800:165,162:3:2	0/0:4,0:0.00:0:0:.:136,0:3:1
chr3	179730278	.	ATT	A	.	germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.18;RPA=11,9;RU=T;STR;TLOD=6.63	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:5,4:0.500:3:1:.:0,130:0:0	0/0:3,0:0.00:0:0:.:0,0:0:0
chr3	179887859	rs41265425	C	A	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.61;TLOD=73.26	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:29,24:0.453:11:13:0.542:1024,781:13:16	0/0:41,3:0.068:2:1:0.333:1471,102:25:16
chr3	180821076	rs7651525	G	A	.	alt_allele_in_normal	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.75;TLOD=28.14	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:8,9:0.529:4:5:0.444:268,295:1:7	0/0:30,1:0.032:1:0:1.00:1022,31:12:18
chr3	183140499	rs522235	C	T	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=115.42	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:53,44:0.455:26:18:0.409:1688,1359:29:24	0/0:80,7:0.076:0:7:1.00:2633,224:38:42
chr3	183140673	rs831256	A	G	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.78;TLOD=49.39	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:22,16:0.421:10:6:0.375:742,532:14:8	0/0:33,2:0.057:1:1:0.500:1090,68:15:18
chr3	183555307	.	C	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=15.65;TLOD=4.13	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:48,2:0.041:1:1:0.500:1624,68:29:19	0/0:52,0:0.00:0:0:.:1770,0:27:25
chr3	184167107	rs1709638	C	T	.	PASS	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.32;TLOD=29.33	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:11,10:0.476:6:4:0.400:376,311:3:8	0/0:21,0:0.00:0:0:.:715,0:8:13
chr3	184182892	rs843366	G	C	.	alt_allele_in_normal;clustered_events;germline_risk	DB;ECNT=2;HCNT=2;MAX_ED=49;MIN_ED=49;NLOD=2.85;TLOD=20.65	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:12,8:0.368:6:2:0.750:404,259:8:4	0/0:22,1:0.043:0:1:0.00:756,36:7:15
chr3	184182941	rs843365	T	C	.	clustered_events;germline_risk	DB;ECNT=2;HCNT=2;MAX_ED=49;MIN_ED=49;NLOD=3.61;TLOD=16.47	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:5,6:0.545:3:3:0.500:154,169:2:3	0/0:12,0:0.00:0:0:.:380,0:4:8
chr3	184186147	.	C	CG	.	alt_allele_in_normal	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=8.90;RPA=6,7;RU=G;STR;TLOD=19.96	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:31,10:0.295:7:3:.:1053,328:15:16	0/0:45,2:0.043:2:0:.:1420,70:24:21
chr3	184187315	rs2942056	G	C	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.94;TLOD=15.21	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:12,5:0.294:2:3:0.400:429,173:10:2	0/0:21,1:0.045:1:0:1.00:759,32:9:12
chr3	184188727	rs843345	T	C	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.29;TLOD=26.40	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:17,9:0.375:5:4:0.556:566,290:12:5	0/0:21,1:0.045:0:1:0.00:663,29:11:10
chr3	184190114	rs843343	A	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=7.22	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,2:0.667:1:1:0.500:33,71:0:1	0/0:4,0:0.00:0:0:.:121,0:2:2
chr3	184321955	.	GGAA	G	.	alt_allele_in_normal;str_contraction;t_lod_fstar	ECNT=1;HCNT=12;MAX_ED=.;MIN_ED=.;NLOD=12.82;RPA=5,4;RU=GAA;STR;TLOD=4.95	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:79,2:0.025:2:0:.:2647,71:26:53	0/0:77,3:0.038:0:3:.:2658,101:32:45
chr3	184575928	.	A	C	.	alt_allele_in_normal	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=3.43;TLOD=15.51	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:165,67:0.227:34:33:0.493:5012,424:62:103	0/0:123,33:0.237:12:21:0.636:3794,154:53:70
chr3	185514381	rs1837882	G	A	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.11;TLOD=38.82	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:19,13:0.406:6:7:0.462:533,420:10:9	0/0:44,3:0.064:1:2:0.333:1224,96:19:25
chr3	185586382	.	T	G	.	alt_allele_in_normal;germline_risk	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=0.790;TLOD=9.29	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:165,59:0.238:31:28:0.525:4285,309:111:54	0/0:139,47:0.273:19:28:0.404:3431,218:90:49
chr3	185598828	rs4624587	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.41;TLOD=9.55	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,3:0.429:2:1:0.667:134,102:4:0	0/0:8,0:0.00:0:0:.:285,0:4:4
chr3	185696764	rs56392101	G	C	.	PASS	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.02;TLOD=35.36	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:9,10:0.526:4:6:0.400:304,363:6:3	0/0:20,0:0.00:0:0:.:709,0:9:11
chr3	186583688	rs41268613	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=10.65	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,3:0.750:0:3:0.00:28,102:0:1	0/0:5,0:0.00:0:0:.:174,0:2:3
chr3	186620444	rs1029353	G	A	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.44;TLOD=11.18	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:7,4:0.364:3:1:0.750:256,124:6:1	0/0:16,1:0.059:0:1:0.00:560,32:10:6
chr3	186853334	rs1501299	G	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=15.00	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:0,4:1.00:2:2:0.500:0,131:0:0	0/0:5,0:0.00:0:0:.:164,0:4:1
chr3	187368293	.	TCAGA	T	.	alt_allele_in_normal;germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.22;TLOD=47.82	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:6,12:0.667:7:5:.:205,391:4:2	0/0:18,1:0.053:0:1:.:587,29:8:10
chr3	187371138	rs1533594	G	A	.	alt_allele_in_normal	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=8.95;TLOD=95.96	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:30,35:0.533:20:15:0.571:1051,1082:14:16	0/0:54,2:0.037:2:0:1.00:1888,63:20:34
chr3	187698465	rs1523468	C	T	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.64;TLOD=36.79	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:9,11:0.579:4:7:0.636:273,371:2:7	0/0:20,1:0.048:1:0:0.00:670,32:9:11
chr3	188524897	.	GTCCT	G	.	str_contraction;triallelic_site	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.36;RPA=13,12;RU=TCCT;STR;TLOD=8.30	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:14,4:0.071:0:0:.:61,0:1:1	0/0:17,0:0.00:0:0:.:251,0:2:6
chr3	189320859	rs1055152	T	C	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.44;TLOD=24.16	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:9,9:0.500:8:1:0.889:293,253:3:6	0/0:18,1:0.053:1:0:1.00:583,28:12:6
chr3	189880232	.	AGT	A	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=7.88;RPA=7,6;RU=GT;STR;TLOD=6.24	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:29,3:0.094:2:1:.:976,103:16:13	0/0:37,1:0.026:1:0:.:1229,34:18:19
chr3	190623553	rs4687162	A	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=6.92	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,2:0.667:1:1:0.500:34,68:1:0	0/0:6,0:0.00:0:0:.:201,0:2:4
chr3	190716133	rs9845129	C	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.21;TLOD=20.74	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,6:0.600:3:3:0.500:143,208:3:1	0/0:14,0:0.00:0:0:.:496,0:5:9
chr3	191281971	rs6444532	A	C	.	clustered_events;germline_risk	DB;ECNT=2;HCNT=2;MAX_ED=30;MIN_ED=30;NLOD=2.11;TLOD=14.52	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,4:0.800:2:2:0.500:34,137:0:1	0/0:7,0:0.00:0:0:.:236,0:4:3
chr3	191282001	rs6444533	A	G	.	clustered_events;germline_risk	DB;ECNT=2;HCNT=2;MAX_ED=30;MIN_ED=30;NLOD=4.21;TLOD=17.28	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:5,5:0.500:2:3:0.600:164,179:2:3	0/0:14,0:0.00:0:0:.:477,0:7:7
chr3	191282083	rs6444534	G	A	.	clustered_events;multi_event_alt_allele_in_normal	DB;ECNT=3;HCNT=4;MAX_ED=118;MIN_ED=45;NLOD=6.40;TLOD=27.98	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:26,10:0.303:7:3:0.700:749,320:11:15	0/0:34,1:0.029:1:0:1.00:970,33:18:16
chr3	191282128	rs6788319	C	A	.	alt_allele_in_normal;clustered_events	DB;ECNT=3;HCNT=4;MAX_ED=118;MIN_ED=45;NLOD=10.27;TLOD=31.42	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:35,13:0.289:8:5:0.385:1201,430:16:19	0/0:54,2:0.021:2:0:0.00:1886,69:23:31
chr3	191282201	rs6444535	C	T	.	clustered_events;homologous_mapping_event	DB;ECNT=3;HCNT=4;MAX_ED=118;MIN_ED=45;NLOD=7.52;TLOD=24.10	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:11,9:0.421:5:4:0.444:373,292:4:7	0/0:27,0:0.00:0:0:.:925,0:13:14
chr3	191375291	rs2028573	A	G	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=108.48	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:29,34:0.533:16:18:0.529:930,1182:14:15	0/0:43,3:0.067:2:1:0.333:1364,103:17:26
chr3	191382853	rs9838011	A	T	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.17;TLOD=58.59	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:12,20:0.613:6:14:0.700:400,617:5:7	0/0:27,2:0.069:1:1:0.500:909,66:10:17
chr3	191461340	.	A	C	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=2;HCNT=64;MAX_ED=64;MIN_ED=64;NLOD=13.38;TLOD=4.48	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:128,26:0.147:17:9:0.346:3852,241:53:75	0/0:105,20:0.169:13:7:0.350:3124,141:48:57
chr3	191461404	rs293833	A	G	.	alt_allele_in_normal;clustered_events;germline_risk	DB;ECNT=2;HCNT=64;MAX_ED=64;MIN_ED=64;NLOD=2.50;TLOD=217.07	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:78,85:0.507:37:48:0.565:2551,2699:41:37	0/0:135,10:0.079:6:4:0.400:4407,307:70:65
chr3	192170663	.	GAAAA	G	.	PASS	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.49;RPA=13,9;RU=A;STR;TLOD=7.78	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:31,8:0.056:1:1:.:0,72:0:0	0/0:43,4:0.028:0:0:.:0,0:0:0
chr3	192873134	rs13078909	A	G	.	clustered_events;germline_risk;t_lod_fstar	DB;ECNT=2;HCNT=2;MAX_ED=52;MIN_ED=52;NLOD=1.81;TLOD=5.29	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,3:0.400:1:2:0.667:131,94:2:2	0/0:7,0:0.00:0:0:.:231,0:4:3
chr3	192873186	rs56001245	T	A	.	clustered_events;germline_risk;t_lod_fstar	DB;ECNT=2;HCNT=2;MAX_ED=52;MIN_ED=52;NLOD=2.41;TLOD=6.19	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,2:0.400:1:1:0.500:126,67:3:1	0/0:8,0:0.00:0:0:.:250,0:6:2
chr3	193364349	rs923494	T	C	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=10;MAX_ED=.;MIN_ED=.;NLOD=2.58;TLOD=56.41	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:15,16:0.516:3:13:0.188:467,581:4:11	0/0:34,2:0.056:0:2:0.00:1055,73:17:17
chr3	193441660	rs12497916	G	A	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.25;TLOD=40.49	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:6,12:0.667:7:5:0.583:213,398:3:3	0/0:26,1:0.037:0:1:0.00:924,34:14:12
chr3	193617057	rs7646539	A	G	.	germline_risk;t_lod_fstar	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=6.19	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:3,2:0.400:0:2:1.00:99,67:3:0	0/0:6,0:0.00:0:0:.:210,0:3:3
chr3	193637285	rs166850	T	C	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=1.51;TLOD=71.11	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:30,31:0.481:14:17:0.452:985,940:17:13	0/0:76,7:0.085:5:2:0.714:2468,204:36:40
chr3	193666154	rs10937594	T	C	.	clustered_events;germline_risk	DB;ECNT=2;HCNT=2;MAX_ED=30;MIN_ED=30;NLOD=2.11;TLOD=10.27	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,3:0.600:2:1:0.667:65,103:1:1	0/0:7,0:0.00:0:0:.:227,0:4:3
chr3	193666184	rs10804957	A	G	.	clustered_events;germline_risk	DB;ECNT=2;HCNT=2;MAX_ED=30;MIN_ED=30;NLOD=3.31;TLOD=12.99	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:6,4:0.400:3:1:0.250:194,140:4:2	0/0:11,0:0.00:0:0:.:366,0:7:4
chr3	194428971	rs13064289	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.41;TLOD=8.50	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,3:0.429:0:3:0.00:133,92:2:2	0/0:8,0:0.00:0:0:.:269,0:6:2
chr3	194756267	rs7617609	A	G	.	alt_allele_in_normal;clustered_events;germline_risk	DB;ECNT=2;HCNT=2;MAX_ED=38;MIN_ED=38;NLOD=5.35;TLOD=58.74	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:32,24:0.408:10:14:0.583:996,758:14:18	0/0:37,1:0.032:0:1:1.00:1196,35:10:27
chr3	194756305	rs7613463	C	T	.	alt_allele_in_normal;clustered_events	DB;ECNT=2;HCNT=2;MAX_ED=38;MIN_ED=38;NLOD=6.26;TLOD=38.57	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:29,16:0.359:7:9:0.563:997,492:17:12	0/0:34,1:0.031:0:1:1.00:1179,32:9:25
chr3	194757040	rs11919157	T	C	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.34;TLOD=27.91	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:7,9:0.563:7:2:0.778:200,286:5:2	0/0:20,1:0.048:0:1:0.00:660,35:11:9
chr3	195620029	.	T	C	.	clustered_events;multi_event_alt_allele_in_normal	ECNT=3;HCNT=4;MAX_ED=45;MIN_ED=6;NLOD=21.09;TLOD=6.47	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:49,3:0.056:2:1:0.667:0|1:195620029_T_C:1566,98:21:28	0/0:86,1:0.012:1:0:1.00:0|1:195620029_T_C:2770,35:27:59
chr3	195620035	.	C	T	.	clustered_events;multi_event_alt_allele_in_normal;t_lod_fstar	ECNT=3;HCNT=4;MAX_ED=45;MIN_ED=6;NLOD=21.09;TLOD=5.32	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:52,2:0.038:2:0:0.00:0|1:195620029_T_C:1550,66:26:26	0/0:86,1:0.012:1:0:0.00:0|1:195620029_T_C:2630,30:29:57
chr3	195620074	.	C	A	.	alt_allele_in_normal;clustered_events	ECNT=3;HCNT=4;MAX_ED=45;MIN_ED=6;NLOD=17.13;TLOD=30.22	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:48,13:0.217:5:8:0.615:1587,392:24:24	0/0:82,2:0.024:1:1:0.500:2694,65:28:54
chr3	195985539	.	G	A	.	PASS	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=10.55;TLOD=11.07	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:25,7:0.219:3:4:0.429:846,219:16:9	0/0:58,1:0.017:0:1:0.00:2004,31:28:30
chr3	196055305	rs419068	C	T	.	alt_allele_in_normal;clustered_events;germline_risk	DB;ECNT=3;HCNT=1;MAX_ED=8;MIN_ED=1;NLOD=4.87;TLOD=126.94	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:37,34:0.458:16:18:0.529:0|1:196055305_C_T:1303,1091:23:14	0/0:71,5:0.055:2:3:0.600:0|1:196055305_C_T:2542,164:40:31
chr3	196055306	rs366268	A	G	.	alt_allele_in_normal;clustered_events;germline_risk	DB;ECNT=3;HCNT=1;MAX_ED=8;MIN_ED=1;NLOD=0.969;TLOD=127.20	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:38,34:0.465:16:18:0.529:0|1:196055305_C_T:1244,1182:22:16	0/0:71,4:0.067:1:3:0.750:0|1:196055305_C_T:2354,144:40:31
chr3	196055313	rs419059	C	T	.	alt_allele_in_normal;clustered_events;germline_risk	DB;ECNT=3;HCNT=1;MAX_ED=8;MIN_ED=1;NLOD=3.67;TLOD=117.84	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:33,29:0.470:14:15:0.517:0|1:196055305_C_T:929,921:18:15	0/0:66,4:0.056:1:3:0.750:0|1:196055305_C_T:1881,131:37:29
chr3	196228228	.	CCTG	C	.	alt_allele_in_normal;str_contraction	ECNT=1;HCNT=5;MAX_ED=.;MIN_ED=.;NLOD=9.20;RPA=5,4;RU=CTG;STR;TLOD=23.45	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:108,8:0.070:5:3:.:3704,277:58:50	0/0:104,5:0.047:3:2:.:3542,177:60:44
chr3	196229855	.	AAG	A	.	str_contraction;t_lod_fstar;triallelic_site	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.40;RPA=11,10;RU=AG;STR;TLOD=4.35	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:38,7:0.084:3:1:.:1278,140:20:18	0/0:25,1:0.019:0:1:.:820,35:12:13
chr3	196324230	.	C	G	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=11.75;TLOD=4.56	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:43,2:0.048:0:2:1.00:1532,71:29:14	0/0:44,0:0.00:0:0:.:1564,0:31:13
chr3	196803055	.	C	A	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=3;HCNT=8;MAX_ED=96;MIN_ED=87;NLOD=8.41;TLOD=5.06	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:53,3:0.058:2:1:0.333:1821,95:26:27	0/0:68,3:0.048:2:1:0.333:2345,92:34:34
chr3	196803142	.	A	G	.	alt_allele_in_normal;clustered_events	ECNT=3;HCNT=8;MAX_ED=96;MIN_ED=87;NLOD=10.82;TLOD=6.99	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:87,3:0.037:2:1:0.333:0|1:196803142_A_G:2912,99:40:47	0/0:66,2:0.033:1:1:0.500:0|1:196803142_A_G:2207,63:30:36
chr3	196803151	.	C	T	.	clustered_events;homologous_mapping_event;t_lod_fstar	ECNT=3;HCNT=8;MAX_ED=96;MIN_ED=87;NLOD=18.96;TLOD=4.93	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:90,2:0.025:1:1:0.500:0|1:196803142_A_G:3112,63:41:49	0/0:71,0:0.00:0:0:.:0|1:196803142_A_G:2454,0:32:39
chr3	196814709	rs11185455	G	A	.	germline_risk;t_lod_fstar	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.12;TLOD=5.11	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:10,2:0.167:0:2:0.00:343,65:5:5	0/0:17,0:0.00:0:0:.:587,0:9:8
chr3	196930799	.	CTT	C	.	germline_risk;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.88;RPA=9,7;RU=T;STR;TLOD=4.66	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,3:0.400:1:2:.:32,96:1:0	0/0:4,0:0.00:0:0:.:103,0:3:0
chr3	197024145	.	AGGCGGGGGAGGCACGGGGCG	A	.	germline_risk;t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=2.15;TLOD=4.69	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:5,2:0.286:2:0:.:140,65:0:5	0/0:7,0:0.00:0:0:.:221,0:5:2
chr3	197848065	rs2306439	G	C	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=2.98;TLOD=62.50	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:15,18:0.545:10:8:0.556:497,638:10:5	0/0:33,2:0.057:1:1:0.500:1105,66:20:13
chr3	197854276	rs9863587	A	G	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.04;TLOD=30.62	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:9,9:0.500:5:4:0.444:279,317:2:7	0/0:16,1:0.059:0:1:1.00:542,36:6:10
chr4	204614	rs114348967	A	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=10.02	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,3:0.500:1:2:0.667:131,104:1:3	0/0:4,0:0.00:0:0:.:130,0:0:4
chr4	343899	.	G	A	.	alt_allele_in_normal	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=28.38;TLOD=13.10	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:134,8:0.063:7:1:0.875:4656,252:55:79	0/0:118,2:0.018:1:1:0.500:4050,66:48:70
chr4	530442	.	T	C	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=23.77;TLOD=4.18	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:77,2:0.027:2:0:1.00:2552,72:40:37	0/0:89,0:0.00:0:0:.:2935,0:51:38
chr4	1095820	.	T	C	.	alt_allele_in_normal;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.39;TLOD=5.20	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:77,5:0.056:2:3:0.400:2393,141:30:47	0/0:110,10:0.090:4:6:0.400:3412,285:47:63
chr4	1693601	.	C	T	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=13.54;TLOD=4.35	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:48,2:0.042:1:1:0.500:1635,70:22:26	0/0:46,0:0.00:0:0:.:1574,0:21:25
chr4	1833010	.	C	A	.	t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=15.30;TLOD=4.09	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:40,2:0.049:1:1:0.500:1405,66:20:20	0/0:51,0:0.00:0:0:.:1782,0:24:27
chr4	2827572	.	G	A	.	germline_risk;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=4.69	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:10,2:0.182:0:2:0.00:319,60:7:3	0/0:5,0:0.00:0:0:.:176,0:2:3
chr4	3037583	.	CCG	C	.	alt_allele_in_normal;t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=3.40;RPA=1,-1;RU=CGTG;STR;TLOD=4.89	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:29,3:0.047:1:2:.:1023,104:18:11	0/0:35,4:0.054:1:1:.:1207,72:19:16
chr4	3442070	.	CCTG	C	.	alt_allele_in_normal;str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.19;RPA=6,5;RU=CTG;STR;TLOD=4.19	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:49,2:0.014:2:0:.:1486,72:25:20	0/0:57,3:0.019:3:0:.:1744,108:35:15
chr4	3821688	rs28869856	C	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=7.45	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:0,2:1.00:1:1:0.500:0,65:0:0	0/0:4,0:0.00:0:0:.:131,0:1:3
chr4	3942257	rs7695071	C	T	.	germline_risk	DB;ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=7.88	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:10,3:0.231:1:2:0.667:340,95:6:4	0/0:5,0:0.00:0:0:.:166,0:3:2
chr4	4409439	rs7654880	T	C	.	germline_risk;t_lod_fstar	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=5.80	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:6,2:0.250:2:0:1.00:195,68:4:2	0/0:4,0:0.00:0:0:.:133,0:4:0
chr4	5748251	.	A	G	.	t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=17.45;TLOD=4.19	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:60,2:0.035:1:1:0.500:1952,70:28:32	0/0:60,0:0.00:0:0:.:1994,0:33:27
chr4	5783478	.	A	G	.	t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=11.13;TLOD=4.46	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:36,2:0.053:0:2:1.00:1087,69:21:15	0/0:37,0:0.00:0:0:.:1182,0:21:16
chr4	7966871	.	G	C	.	germline_risk;t_lod_fstar	ECNT=1;HCNT=5;MAX_ED=.;MIN_ED=.;NLOD=1.71;TLOD=4.12	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:13,3:0.136:3:0:1.00:306,29:7:6	0/0:11,1:0.067:0:1:0.00:229,5:7:4
chr4	8020054	.	GA	G	.	germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;RPA=3,2;RU=A;STR;TLOD=8.61	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:3,3:0.500:1:2:.:107,106:1:2	0/0:5,0:0.00:0:0:.:164,0:3:2
chr4	8106753	.	A	G	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.71;TLOD=5.21	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:8,2:0.200:0:2:1.00:198,64:4:4	0/0:9,0:0.00:0:0:.:275,0:3:6
chr4	9030608	.	C	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.21;TLOD=4.50	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:9,3:0.250:3:0:0.00:318,98:7:2	0/0:16,0:0.00:0:0:.:567,0:5:11
chr4	9563479	.	G	T	.	clustered_events;homologous_mapping_event;t_lod_fstar	ECNT=3;HCNT=2;MAX_ED=52;MIN_ED=43;NLOD=2.71;TLOD=4.18	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:8,2:0.200:2:0:1.00:261,61:3:5	0/0:10,0:0.00:0:0:.:341,0:6:4
chr4	9563522	.	C	T	.	clustered_events;germline_risk;homologous_mapping_event	ECNT=3;HCNT=2;MAX_ED=52;MIN_ED=43;NLOD=2.11;TLOD=6.74	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:9,2:0.182:2:0:0.00:0|1:9563522_C_T:328,68:3:6	0/0:7,0:0.00:0:0:.:0|1:9563522_C_T:229,0:6:1
chr4	9563531	.	C	T	.	clustered_events;germline_risk;homologous_mapping_event	ECNT=3;HCNT=2;MAX_ED=52;MIN_ED=43;NLOD=2.11;TLOD=6.74	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:10,2:0.182:2:0:0.00:0|1:9563522_C_T:353,65:3:7	0/0:7,0:0.00:0:0:.:0|1:9563522_C_T:236,0:6:1
chr4	9563668	.	A	T	.	PASS	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=2.75;TLOD=6.46	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:10,3:0.143:2:1:0.333:308,99:4:5	0/0:22,1:0.025:0:1:1.00:609,34:7:11
chr4	9782426	.	G	C	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=16.11;TLOD=4.21	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:57,2:0.036:0:2:0.00:1743,70:40:17	0/0:57,0:0.00:0:0:.:1741,0:29:28
chr4	20553757	.	ATG	A	.	alt_allele_in_normal;str_contraction;t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=3.18;RPA=6,5;RU=TG;STR;TLOD=4.04	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:35,2:0.059:2:0:.:1017,64:24:11	0/0:34,2:0.057:1:1:.:933,61:16:18
chr4	22473713	.	T	C	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.02;TLOD=4.83	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:18,2:0.100:2:0:1.00:585,67:8:10	0/0:20,0:0.00:0:0:.:638,0:12:8
chr4	25666101	.	TTTTG	T	.	alt_allele_in_normal;str_contraction	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=17.11;RPA=4,3;RU=TTTG;STR;TLOD=9.15	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:107,4:0.040:2:2:.:3554,127:57:50	0/0:92,2:0.023:0:2:.:3115,65:51:41
chr4	39973353	.	T	C	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=3;HCNT=8;MAX_ED=39;MIN_ED=35;NLOD=15.47;TLOD=5.11	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:78,4:0.041:3:1:0.750:2490,120:39:39	0/0:80,2:0.026:0:2:0.00:2547,64:42:38
chr4	39973388	.	C	G	.	clustered_events;multi_event_alt_allele_in_normal	ECNT=3;HCNT=8;MAX_ED=39;MIN_ED=35;NLOD=20.18;TLOD=9.84	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:91,5:0.044:4:1:0.200:0|1:39973388_C_G:3099,168:45:46	0/0:85,1:0.012:0:1:1.00:0|1:39973388_C_G:2906,33:39:46
chr4	39973392	.	C	T	.	clustered_events;multi_event_alt_allele_in_normal	ECNT=3;HCNT=8;MAX_ED=39;MIN_ED=35;NLOD=20.48;TLOD=9.78	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:93,4:0.043:4:0:0.00:0|1:39973388_C_G:2856,124:44:49	0/0:87,1:0.012:0:1:1.00:0|1:39973388_C_G:2732,32:37:50
chr4	40043701	.	CCCT	C	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=11.99;RPA=4,3;RU=CCT;STR;TLOD=5.51	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:43,2:0.048:1:1:.:1426,71:21:22	0/0:43,0:0.00:0:0:.:1401,0:21:22
chr4	40142179	.	G	T	.	germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=14.02	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,4:0.800:2:2:0.500:37,132:1:0	0/0:5,0:0.00:0:0:.:162,0:1:4
chr4	46979030	.	C	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=10.23;TLOD=4.55	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:40,2:0.053:2:0:0.00:1375,70:19:21	0/0:36,0:0.00:0:0:.:1254,0:19:17
chr4	47031750	.	ATCTCGCTC	A	.	PASS	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=6.51;TLOD=11.94	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:28,4:0.069:1:3:.:849,131:20:6	0/0:31,2:0.036:0:0:.:886,0:14:13
chr4	47905507	rs1822030	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=9.95	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,3:0.750:1:2:0.333:34,95:0:1	0/0:4,0:0.00:0:0:.:138,0:2:2
chr4	49561394	.	A	T	.	germline_risk;t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=4.67	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:11,3:0.200:0:3:1.00:324,97:4:7	0/0:6,0:0.00:0:0:.:194,0:2:4
chr4	54976204	.	C	T	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.27;TLOD=4.21	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:23,4:0.087:2:2:0.500:774,113:13:10	0/0:24,0:0.00:0:0:.:828,0:12:12
chr4	55098821	.	A	G	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=8.43;TLOD=4.23	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:38,2:0.051:0:2:1.00:1238,67:20:18	0/0:29,0:0.00:0:0:.:961,0:14:15
chr4	55455901	.	C	T	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=23.17;TLOD=4.21	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:70,3:0.032:0:3:1.00:2366,102:29:41	0/0:87,0:0.00:0:0:.:2986,0:35:52
chr4	61775749	.	T	C	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=10.83;TLOD=4.14	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:29,2:0.065:0:2:0.00:954,64:13:16	0/0:36,0:0.00:0:0:.:1174,0:19:17
chr4	65490539	.	A	C	.	alt_allele_in_normal;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.02;TLOD=5.92	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:60,16:0.212:7:9:0.563:1575,125:23:37	0/0:45,8:0.170:3:5:0.625:1157,22:20:25
chr4	67558637	.	AGT	A	.	alt_allele_in_normal;germline_risk;str_contraction;t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=0.878;RPA=9,8;RU=GT;STR;TLOD=4.76	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:13,3:0.188:1:2:.:431,103:8:5	0/0:11,1:0.083:0:1:.:354,34:6:5
chr4	68129892	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=12.64;TLOD=4.14	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:29,2:0.065:2:0:1.00:997,64:20:9	0/0:43,0:0.00:0:0:.:1467,0:17:26
chr4	68568428	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=115.73;TLOD=5.14	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:451,4:9.569e-03:1:3:0.250:15523,130:225:226	0/0:403,0:0.00:0:0:.:13762,0:203:200
chr4	69018230	.	T	C	.	alt_allele_in_normal	ECNT=1;HCNT=12;MAX_ED=.;MIN_ED=.;NLOD=50.63;TLOD=17.40	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:231,15:0.047:8:7:0.533:7044,503:108:123	0/0:263,8:0.021:7:1:0.875:7969,280:122:141
chr4	69200508	.	T	C	.	alt_allele_in_normal	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=36.79;TLOD=7.61	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:136,6:0.044:3:3:0.500:4340,193:64:72	0/0:155,7:0.046:5:2:0.714:4959,240:67:88
chr4	69289698	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=2;HCNT=16;MAX_ED=59;MIN_ED=59;NLOD=11.74;TLOD=8.87	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:163,10:0.043:5:5:0.500:5687,289:77:86	0/0:137,12:0.057:9:3:0.750:4819,350:78:59
chr4	69289757	.	C	G	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=2;HCNT=16;MAX_ED=59;MIN_ED=59;NLOD=10.22;TLOD=4.07	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:96,3:0.034:1:2:0.667:3323,104:50:46	0/0:103,5:0.050:3:2:0.400:3623,174:64:39
chr4	78058127	.	CGT	C	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=23.99;RPA=6,5;RU=GT;STR;TLOD=5.18	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:77,3:0.038:3:0:.:2144,84:46:31	0/0:84,0:0.00:0:0:.:2321,0:50:34
chr4	78847140	.	TTA	T	.	germline_risk;str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;RPA=8,7;RU=TA;STR;TLOD=6.18	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:12,3:0.200:3:0:.:398,101:9:3	0/0:5,0:0.00:0:0:.:167,0:2:3
chr4	78870928	.	CCAG	C	.	str_contraction	ECNT=1;HCNT=6;MAX_ED=.;MIN_ED=.;NLOD=13.75;RPA=8,7;RU=CAG;STR;TLOD=7.09	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:46,3:0.065:2:1:.:1561,99:20:26	0/0:49,0:0.00:0:0:.:1713,0:26:23
chr4	79984977	rs4444771	C	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=6.62	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,2:0.667:1:1:0.500:36,65:0:1	0/0:4,0:0.00:0:0:.:127,0:1:3
chr4	80201859	.	CGT	C	.	alt_allele_in_normal;str_contraction;triallelic_site	ECNT=1;HCNT=6;MAX_ED=.;MIN_ED=.;NLOD=10.85;RPA=8,7;RU=GT;STR;TLOD=19.12	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:66,13:0.058:6:5:.:2042,364:38:23	0/0:66,3:0.015:2:1:.:1914,103:35:23
chr4	80202095	.	CCAG	C	.	str_contraction	ECNT=1;HCNT=3;MAX_ED=.;MIN_ED=.;NLOD=19.43;RPA=6,5;RU=CAG;STR;TLOD=14.37	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:76,5:0.062:2:3:.:2494,168:36:40	0/0:80,1:0.013:1:0:.:2689,35:38:42
chr4	80387214	.	G	T	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=15.95;TLOD=4.03	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:56,2:0.036:1:1:0.500:1771,68:33:23	0/0:56,0:0.00:0:0:.:1719,0:29:27
chr4	81427732	.	AAGC	A	.	str_contraction	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=10.81;RPA=5,4;RU=AGC;STR;TLOD=6.97	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:48,3:0.064:2:1:.:1542,96:33:15	0/0:40,0:0.00:0:0:.:1336,0:22:18
chr4	83416942	.	A	G	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.81;TLOD=5.03	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:16,2:0.111:1:1:0.500:531,68:6:10	0/0:16,0:0.00:0:0:.:522,0:9:7
chr4	84495584	.	GGTGT	G	.	PASS	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=4.88;RPA=10,8;RU=GT;STR;TLOD=17.26	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:37,6:0.077:4:2:.:1167,202:20:15	0/0:30,1:0.016:0:1:.:1014,35:13:17
chr4	88113415	.	ATCT	A	.	alt_allele_in_normal;str_contraction	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=28.84;RPA=5,4;RU=TCT;STR;TLOD=7.04	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:174,3:0.019:1:2:.:5574,99:92:82	0/0:172,4:0.026:1:3:.:5558,127:78:94
chr4	88697279	.	GCCT	G	.	alt_allele_in_normal;clustered_events;str_contraction	ECNT=2;HCNT=12;MAX_ED=53;MIN_ED=53;NLOD=23.09;RPA=5,4;RU=CCT;STR;TLOD=12.98	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:152,5:0.033:3:2:.:5179,172:76:76	0/0:108,2:0.019:0:2:.:3665,69:54:54
chr4	88697332	.	TTCC	T	.	clustered_events;multi_event_alt_allele_in_normal;str_contraction	ECNT=2;HCNT=12;MAX_ED=53;MIN_ED=53;NLOD=13.19;RPA=5,4;RU=TCC;STR;TLOD=11.11	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:82,4:0.050:2:2:.:2685,136:43:39	0/0:61,1:0.017:0:1:.:1961,34:36:25
chr4	88906288	.	AAAAC	A	.	alt_allele_in_normal;str_contraction	ECNT=1;HCNT=10;MAX_ED=.;MIN_ED=.;NLOD=25.28;RPA=5,4;RU=AAAC;STR;TLOD=10.10	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:136,5:0.035:4:1:.:4283,160:59:77	0/0:128,4:0.030:2:2:.:4079,127:58:70
chr4	89923239	.	GAGC	G	.	alt_allele_in_normal;str_contraction;t_lod_fstar	ECNT=1;HCNT=3;MAX_ED=.;MIN_ED=.;NLOD=49.79;RPA=5,4;RU=AGC;STR;TLOD=4.04	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:278,2:8.889e-03:0:2:.:9804,72:134:144	0/0:247,3:0.014:1:2:.:8879,109:110:137
chr4	90838934	.	A	G	.	alt_allele_in_normal;germline_risk;t_lod_fstar	ECNT=1;HCNT=24;MAX_ED=.;MIN_ED=.;NLOD=0.554;TLOD=4.43	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:181,5:0.024:4:1:0.200:5862,129:109:72	0/0:192,21:0.077:13:8:0.381:6291,723:120:72
chr4	94573541	.	A	G	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.32;TLOD=4.17	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:28,2:0.067:1:1:0.500:940,64:13:15	0/0:21,0:0.00:0:0:.:704,0:13:8
chr4	95114645	.	GACAC	G	.	alt_allele_in_normal;t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=9.96;RPA=12,10;RU=AC;STR;TLOD=4.28	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:60,3:0.077:2:1:.:1686,102:30:20	0/0:50,2:0.053:1:1:.:1347,59:24:16
chr4	99072225	.	A	G	.	germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=6.65	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:0,2:1.00:1:1:0.500:0,57:0:0	0/0:4,0:0.00:0:0:.:131,0:1:3
chr4	105942524	.	TCCA	T	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=24.87;RPA=5,4;RU=CCA;STR;TLOD=6.11	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:117,3:0.026:2:1:.:3674,99:49:68	0/0:102,1:0.010:1:0:.:3198,34:46:56
chr4	108789347	.	C	G	.	t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=7.82;TLOD=4.79	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:27,2:0.069:0:2:1.00:935,70:15:12	0/0:26,0:0.00:0:0:.:882,0:16:10
chr4	109347143	.	T	C	.	clustered_events;multi_event_alt_allele_in_normal;t_lod_fstar	ECNT=2;HCNT=6;MAX_ED=4;MIN_ED=4;NLOD=16.87;TLOD=4.96	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:75,2:0.026:2:0:1.00:0|1:109347143_T_C:2523,64:39:36	0/0:75,1:0.014:1:0:1.00:0|1:109347143_T_C:2474,31:49:26
chr4	109347147	.	G	GAA	.	clustered_events;multi_event_alt_allele_in_normal;t_lod_fstar	ECNT=2;HCNT=6;MAX_ED=4;MIN_ED=4;NLOD=16.57;RPA=1,3;RU=A;STR;TLOD=4.96	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:76,2:0.026:2:0:.:0|1:109347143_T_C:2619,69:38:38	0/0:71,1:0.014:1:0:.:0|1:109347143_T_C:2476,34:45:26
chr4	112587292	.	T	C	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=28.89;TLOD=4.12	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:104,3:0.020:3:0:1.00:3414,88:59:45	0/0:99,0:0.00:0:0:.:3264,0:58:41
chr4	118480231	rs114898601	G	A	.	germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=8.64	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:6,3:0.333:2:1:0.667:201,97:3:3	0/0:6,0:0.00:0:0:.:206,0:4:2
chr4	119298659	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.62;TLOD=4.48	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:15,2:0.118:1:1:0.500:512,62:8:7	0/0:22,0:0.00:0:0:.:740,0:9:13
chr4	120818256	.	GCA	G	.	germline_risk;str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.10;RPA=8,7;RU=CA;STR;TLOD=4.70	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:5,2:0.286:1:1:.:161,71:5:0	0/0:7,0:0.00:0:0:.:246,0:3:4
chr4	125320716	rs2710555	C	T	.	t_lod_fstar	DB;ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=43.03;TLOD=4.82	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:210,4:0.016:3:1:0.250:6590,134:111:99	0/0:158,0:0.00:0:0:.:5084,0:82:76
chr4	138481235	.	T	C	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.72;TLOD=4.94	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:22,2:0.091:2:0:1.00:740,69:8:14	0/0:21,0:0.00:0:0:.:700,0:5:16
chr4	138561255	.	AGAG	A	.	alt_allele_in_normal;str_contraction	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=8.66;RPA=5,4;RU=GAG;STR;TLOD=8.04	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:83,3:0.040:1:2:.:2739,98:39:44	0/0:80,3:0.041:2:1:.:2618,101:38:42
chr4	139045277	.	C	T	.	clustered_events;homologous_mapping_event	ECNT=3;HCNT=4;MAX_ED=15;MIN_ED=6;NLOD=25.89;TLOD=7.72	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:96,3:0.032:0:3:1.00:0|1:139045277_C_T:3025,95:45:51	0/0:84,0:0.00:0:0:.:0|1:139045277_C_T:2662,0:43:41
chr4	139045283	.	T	C	.	clustered_events;homologous_mapping_event;t_lod_fstar	ECNT=3;HCNT=4;MAX_ED=15;MIN_ED=6;NLOD=26.14;TLOD=4.77	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:102,4:0.021:0:4:0.00:0|1:139045277_C_T:3373,138:47:55	0/0:86,0:0.00:0:0:.:0|1:139045277_C_T:2832,0:42:44
chr4	139045292	.	T	G	.	clustered_events;homologous_mapping_event;t_lod_fstar	ECNT=3;HCNT=4;MAX_ED=15;MIN_ED=6;NLOD=26.44;TLOD=4.74	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:107,4:0.020:0:4:0.00:0|1:139045277_C_T:3325,136:49:58	0/0:92,0:0.00:0:0:.:0|1:139045277_C_T:2825,0:47:45
chr4	139344467	rs13146944	G	A	.	germline_risk;t_lod_fstar	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=5.34	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:5,2:0.286:1:1:0.500:164,62:1:4	0/0:5,0:0.00:0:0:.:175,0:2:3
chr4	139889484	.	GGCT	G	.	alt_allele_in_normal;str_contraction;t_lod_fstar	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=12.27;RPA=8,7;RU=GCT;STR;TLOD=6.11	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:68,3:0.043:1:2:.:2314,106:48:20	0/0:66,2:0.029:1:1:.:2297,72:41:25
chr4	146639545	.	CCT	C	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=5.70;RPA=6,5;RU=CT;STR;TLOD=4.29	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:28,2:0.067:1:1:.:964,67:13:15	0/0:19,0:0.00:0:0:.:655,0:8:11
chr4	148434993	.	C	T	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.91;TLOD=4.21	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:12,2:0.143:1:1:0.500:400,59:4:8	0/0:13,0:0.00:0:0:.:450,0:7:6
chr4	150350096	.	T	G	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=21.07;TLOD=4.22	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:81,1:0.026:0:1:0.00:2538,10:46:35	0/0:75,0:0.00:0:0:.:2413,0:38:37
chr4	155829781	rs56853586	G	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=6.95	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,2:0.500:2:0:1.00:72,72:0:2	0/0:5,0:0.00:0:0:.:180,0:1:4
chr4	157122483	rs41280503	C	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=9.02	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:3,3:0.500:3:0:0.00:101,94:3:0	0/0:4,0:0.00:0:0:.:138,0:4:0
chr4	158170334	.	CGCT	C	.	str_contraction	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.87;RPA=5,4;RU=GCT;STR;TLOD=13.16	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:25,4:0.154:0:4:.:734,127:14:11	0/0:25,0:0.00:0:0:.:758,0:12:13
chr4	158644958	.	T	G	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=9.89;TLOD=4.11	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:32,2:0.063:1:1:0.500:1068,64:15:17	0/0:33,0:0.00:0:0:.:1074,0:16:17
chr4	165239011	.	A	C	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.51;TLOD=6.01	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:15,3:0.167:1:2:0.667:481,108:5:10	0/0:17,0:0.00:0:0:.:569,0:11:6
chr4	173332125	.	TTCC	T	.	alt_allele_in_normal;str_contraction;t_lod_fstar	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=12.83;RPA=5,4;RU=TCC;STR;TLOD=5.07	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:67,2:0.029:2:0:.:2234,69:36:31	0/0:70,3:0.042:1:2:.:2318,95:38:32
chr4	177960662	rs10520397	C	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=6.69	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:3,2:0.400:0:2:1.00:104,72:1:2	0/0:4,0:0.00:0:0:.:140,0:3:1
chr4	181522786	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=13.54;TLOD=4.21	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:47,2:0.044:2:0:1.00:1613,68:32:15	0/0:51,0:0.00:0:0:.:1755,0:21:30
chr4	183664116	.	ATG	A	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=10.43;RPA=7,6;RU=TG;STR;TLOD=5.32	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:54,3:0.060:2:1:.:1692,93:32:22	0/0:36,0:0.00:0:0:.:1137,0:22:14
chr4	184765794	.	AAC	A	.	alt_allele_in_normal;str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.71;RPA=9,8;RU=AC;STR;TLOD=5.21	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:36,4:0.100:2:2:.:1147,130:18:18	0/0:32,2:0.059:1:1:.:1037,58:15:17
chr4	185353768	rs11724164	G	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=15.76	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,5:0.556:3:2:0.600:132,162:3:1	0/0:7,0:0.00:0:0:.:231,0:4:3
chr4	190068484	.	G	A	.	alt_allele_in_normal;t_lod_fstar	ECNT=1;HCNT=14;MAX_ED=.;MIN_ED=.;NLOD=5.84;TLOD=4.25	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:13,4:0.077:4:0:1.00:398,118:1:12	0/0:57,3:0.029:0:3:0.00:1696,95:25:30
chr4	190082134	.	C	G	.	clustered_events;germline_risk;homologous_mapping_event	ECNT=5;HCNT=4;MAX_ED=40;MIN_ED=2;NLOD=1.20;TLOD=8.17	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:1,2:0.667:1:1:0.500:0|1:190082134_C_G:28,64:1:0	0/0:6,0:0.00:0:0:.:0|1:190082134_C_G:195,0:3:3
chr4	190082136	.	C	A	.	clustered_events;germline_risk;homologous_mapping_event	ECNT=5;HCNT=4;MAX_ED=40;MIN_ED=2;NLOD=0.903;TLOD=8.17	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:0,2:0.667:1:1:0.500:0|1:190082134_C_G:0,59:0:0	0/0:6,0:0.00:0:0:.:0|1:190082134_C_G:198,0:3:3
chr4	190082140	.	C	G	.	clustered_events;germline_risk;homologous_mapping_event	ECNT=5;HCNT=4;MAX_ED=40;MIN_ED=2;NLOD=0.903;TLOD=9.00	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:0,2:1.00:1:1:0.500:0|1:190082134_C_G:0,65:0:0	0/0:8,0:0.00:0:0:.:0|1:190082134_C_G:257,0:4:4
chr4	190082144	.	C	T	.	clustered_events;germline_risk;homologous_mapping_event	ECNT=5;HCNT=4;MAX_ED=40;MIN_ED=2;NLOD=0.903;TLOD=9.00	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:0,2:1.00:1:1:0.500:0|1:190082134_C_G:0,64:0:0	0/0:10,0:0.00:0:0:.:0|1:190082134_C_G:322,0:6:4
chr4	190082174	.	C	A	.	clustered_events;germline_risk;homologous_mapping_event;t_lod_fstar	ECNT=5;HCNT=6;MAX_ED=40;MIN_ED=2;NLOD=0.903;TLOD=4.14	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:0,1:1.00:0:1:1.00:0,16:0:0	0/0:36,0:0.00:0:0:.:1192,0:19:17
chr5	173085	rs6885136	C	T	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=139.27	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:43,46:0.529:26:20:0.435:1225,1467:19:24	0/0:38,3:0.073:2:1:0.333:1085,97:19:19
chr5	173991	rs4956987	G	A	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.637;TLOD=38.67	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:14,12:0.480:5:7:0.417:426,405:7:7	0/0:18,1:0.067:1:0:1.00:564,34:12:6
chr5	254521	.	C	T	.	germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=10.62	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:3,4:0.571:2:2:0.500:80,128:2:1	0/0:8,0:0.00:0:0:.:236,0:5:3
chr5	289978	.	G	T	.	t_lod_fstar	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=11.44;TLOD=4.03	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:65,3:0.033:1:2:0.333:2255,103:39:26	0/0:43,0:0.00:0:0:.:1533,0:18:25
chr5	753056	.	G	A	.	germline_risk;t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=6.15	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:0,2:1.00:0:2:0.00:0,52:0:0	0/0:5,0:0.00:0:0:.:171,0:3:2
chr5	766969	rs111384701	C	T	.	alt_allele_in_normal	DB;ECNT=1;HCNT=56;MAX_ED=.;MIN_ED=.;NLOD=25.88;TLOD=60.26	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:121,24:0.166:11:13:0.542:3356,771:50:71	0/0:121,3:0.024:0:3:1.00:3342,99:50:71
chr5	767538	.	GAGAA	G	.	alt_allele_in_normal	ECNT=1;HCNT=8;MAX_ED=.;MIN_ED=.;NLOD=6.25;TLOD=6.46	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:127,3:0.027:2:1:.:4431,100:55:72	0/0:85,4:0.049:1:3:.:2955,137:46:39
chr5	840589	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=2;HCNT=6;MAX_ED=81;MIN_ED=81;NLOD=83.66;TLOD=12.43	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:659,13:0.022:4:9:0.308:22217,371:314:345	0/0:426,10:0.025:4:6:0.400:14503,332:197:229
chr5	840670	.	C	A	.	alt_allele_in_normal;clustered_events	ECNT=2;HCNT=4;MAX_ED=81;MIN_ED=81;NLOD=27.12;TLOD=15.66	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:403,13:0.033:3:10:0.769:13578,387:194:209	0/0:290,18:0.062:8:10:0.556:9909,547:131:159
chr5	843581	.	G	T	.	PASS	ECNT=1;HCNT=8;MAX_ED=.;MIN_ED=.;NLOD=18.75;TLOD=33.83	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:87,18:0.165:9:9:0.500:3047,586:47:40	0/0:82,1:0.012:1:0:1.00:2877,33:41:41
chr5	847350	.	G	C	.	germline_risk;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.602;TLOD=5.52	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,2:0.667:1:1:0.500:29,66:0:1	0/0:4,0:0.00:0:0:.:144,0:2:2
chr5	878436	.	A	G	.	alt_allele_in_normal;clustered_events	ECNT=2;HCNT=4;MAX_ED=25;MIN_ED=25;NLOD=17.03;TLOD=12.14	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:158,7:0.046:3:4:0.571:4851,242:83:75	0/0:91,3:0.033:2:1:0.333:2811,82:43:48
chr5	878461	.	C	T	.	clustered_events;multi_event_alt_allele_in_normal	ECNT=2;HCNT=4;MAX_ED=25;MIN_ED=25;NLOD=22.11;TLOD=9.25	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:174,6:0.037:3:3:0.500:6014,189:86:88	0/0:95,1:0.011:1:0:0.00:3274,32:46:49
chr5	881011	.	C	T	.	t_lod_fstar	ECNT=1;HCNT=16;MAX_ED=.;MIN_ED=.;NLOD=5.42;TLOD=4.60	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:21,2:0.087:2:0:0.00:701,66:11:10	0/0:18,0:0.00:0:0:.:613,0:7:11
chr5	1212532	.	C	T	.	alt_allele_in_normal;germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.78;TLOD=140.28	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:29,44:0.603:28:16:0.364:762,1406:14:15	0/0:31,3:0.088:2:1:0.333:870,67:16:15
chr5	1260400	.	GCA	G	.	alt_allele_in_normal;str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.96;RPA=8,7;RU=CA;STR;TLOD=5.85	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:90,4:0.046:2:2:.:2565,127:47:43	0/0:34,2:0.057:0:2:.:961,56:16:18
chr5	1574064	.	C	T	.	germline_risk;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=6.09	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:3,2:0.400:1:1:0.500:95,66:1:2	0/0:4,0:0.00:0:0:.:139,0:2:2
chr5	1879554	.	CCCT	C	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=9.03;RPA=4,3;RU=CCT;STR;TLOD=5.20	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:58,2:0.033:1:1:.:1918,66:33:25	0/0:45,1:0.022:1:0:.:1509,33:20:25
chr5	2788418	.	TCC	T	.	germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.46;RPA=10,8;RU=C;STR;TLOD=12.85	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,5:0.714:0:5:.:67,159:1:1	0/0:5,0:0.00:0:0:.:159,0:2:3
chr5	5234915	rs2913630	T	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.71;TLOD=15.19	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:6,5:0.455:3:2:0.600:185,161:4:2	0/0:9,0:0.00:0:0:.:296,0:5:4
chr5	5262988	rs2913656	G	A	.	germline_risk;t_lod_fstar	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=6.05	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,2:0.500:2:0:1.00:66,63:0:2	0/0:7,0:0.00:0:0:.:239,0:6:1
chr5	5376249	rs41418444	G	A	.	PASS	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.72;TLOD=46.08	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:26,17:0.375:7:10:0.412:909,576:15:11	0/0:21,0:0.00:0:0:.:735,0:7:14
chr5	5376612	rs66478976	C	A	.	clustered_events;germline_risk;homologous_mapping_event	DB;ECNT=3;HCNT=1;MAX_ED=16;MIN_ED=6;NLOD=1.20;TLOD=6.72	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:4,3:0.333:0:3:1.00:0|1:5376612_C_A:137,101:3:1	0/0:5,0:0.00:0:0:.:0|1:5376612_C_A:179,0:4:1
chr5	5376618	.	G	T	.	clustered_events;germline_risk;homologous_mapping_event	ECNT=3;HCNT=1;MAX_ED=16;MIN_ED=6;NLOD=1.20;TLOD=10.80	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:4,2:0.429:0:2:0.00:0|1:5376612_C_A:135,66:3:1	0/0:5,0:0.00:0:0:.:0|1:5376612_C_A:175,0:4:1
chr5	5376628	.	C	T	.	clustered_events;germline_risk;homologous_mapping_event	ECNT=3;HCNT=1;MAX_ED=16;MIN_ED=6;NLOD=1.51;TLOD=7.18	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:5,2:0.286:0:2:1.00:0|1:5376612_C_A:173,64:4:1	0/0:5,0:0.00:0:0:.:0|1:5376612_C_A:177,0:4:1
chr5	6604818	rs6889694	C	T	.	germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=19.67	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:3,6:0.667:1:5:0.833:105,193:1:2	0/0:6,0:0.00:0:0:.:204,0:2:4
chr5	6607012	.	GAAC	G	.	alt_allele_in_normal;germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.21;TLOD=41.46	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:11,11:0.500:4:7:.:380,367:5:6	0/0:18,1:0.053:0:1:.:618,35:8:10
chr5	6611644	rs10454287	A	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=24.44	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:10,8:0.444:3:5:0.625:329,260:4:6	0/0:5,0:0.00:0:0:.:161,0:1:4
chr5	6619975	rs55802212	C	T	.	clustered_events;germline_risk	DB;ECNT=2;HCNT=1;MAX_ED=4;MIN_ED=4;NLOD=1.20;TLOD=19.21	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:6,5:0.455:2:3:0.600:0|1:6619975_C_T:188,142:3:3	0/0:4,0:0.00:0:0:.:0|1:6619975_C_T:137,0:2:2
chr5	6619979	rs2288445	C	T	.	clustered_events;germline_risk	DB;ECNT=2;HCNT=1;MAX_ED=4;MIN_ED=4;NLOD=1.20;TLOD=19.21	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:6,5:0.455:2:3:0.600:0|1:6619975_C_T:187,154:3:3	0/0:4,0:0.00:0:0:.:0|1:6619975_C_T:135,0:2:2
chr5	6754899	.	AAC	A	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=11.40;RPA=7,6;RU=AC;STR;TLOD=5.37	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:67,3:0.050:3:0:.:2156,101:38:29	0/0:43,0:0.00:0:0:.:1423,0:21:22
chr5	7301896	rs16874928	T	C	.	germline_risk	DB;ECNT=1;HCNT=6;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=10.78	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:9,4:0.364:4:0:1.00:285,139:4:5	0/0:5,0:0.00:0:0:.:163,0:1:4
chr5	7306776	.	T	C	.	PASS	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.12;TLOD=16.83	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:13,7:0.333:4:3:0.571:423,196:4:9	0/0:17,0:0.00:0:0:.:531,0:9:8
chr5	7826567	rs6887726	T	C	.	germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=2.71;TLOD=12.75	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:6,4:0.400:0:4:0.00:201,138:4:2	0/0:9,0:0.00:0:0:.:295,0:5:4
chr5	10973815	rs1566624	T	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.71;TLOD=29.26	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:5,8:0.615:7:1:0.875:159,292:4:1	0/0:9,0:0.00:0:0:.:260,0:6:3
chr5	10988060	rs879353	T	C	.	alt_allele_in_normal	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=11.61;TLOD=115.59	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:55,40:0.425:21:19:0.525:1727,1327:32:23	0/0:69,3:0.031:2:1:0.667:2145,78:47:22
chr5	13638194	.	C	T	.	t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=8.43;TLOD=4.26	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:47,2:0.043:1:1:0.500:1646,69:24:23	0/0:28,0:0.00:0:0:.:969,0:18:10
chr5	13762930	rs6554813	G	A	.	PASS	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.72;TLOD=45.25	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:16,16:0.484:5:11:0.313:522,508:7:9	0/0:19,0:0.00:0:0:.:653,0:7:12
chr5	13794087	.	T	C	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.62;TLOD=4.07	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:31,3:0.067:2:1:0.667:1011,97:12:19	0/0:24,0:0.00:0:0:.:781,0:9:15
chr5	14507409	.	A	ATC	.	germline_risk	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.21;RPA=5,6;RU=TC;STR;TLOD=8.87	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,3:0.600:0:3:.:66,97:1:1	0/0:4,0:0.00:0:0:.:131,0:1:3
chr5	14871511	.	AGGGGCGAC	A	.	germline_risk;str_contraction	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.16;RPA=2,1;RU=GGGGCGAC;STR;TLOD=10.66	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,3:0.429:0:3:.:116,100:2:2	0/0:4,0:0.00:0:0:.:115,0:3:1
chr5	16758070	.	A	G	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=7.22;TLOD=4.61	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:30,2:0.063:2:0:0.00:931,69:18:12	0/0:25,0:0.00:0:0:.:778,0:9:16
chr5	17203131	.	C	G	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.12;TLOD=4.01	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:36,2:0.057:1:1:0.500:1271,64:14:22	0/0:19,0:0.00:0:0:.:673,0:10:9
chr5	17655153	.	C	T	.	germline_risk;t_lod_fstar	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=5.12	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,2:0.667:1:1:0.500:35,50:0:1	0/0:6,0:0.00:0:0:.:196,0:3:3
chr5	17747911	rs17495039	T	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=19.06	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:7,6:0.462:4:2:0.667:218,201:3:4	0/0:7,0:0.00:0:0:.:215,0:5:2
chr5	21783551	.	C	A	.	t_lod_fstar	ECNT=1;HCNT=3;MAX_ED=.;MIN_ED=.;NLOD=10.23;TLOD=4.05	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:46,2:0.042:0:2:1.00:1599,67:26:20	0/0:34,0:0.00:0:0:.:1206,0:18:16
chr5	23304663	rs10067319	T	C	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=4.66;TLOD=84.08	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:29,26:0.481:18:8:0.692:991,918:16:13	0/0:29,1:0.034:0:1:0.00:995,36:19:10
chr5	23980922	rs7714758	C	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=16.48	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:3,6:0.625:3:3:0.500:104,200:0:3	0/0:5,0:0.00:0:0:.:173,0:4:1
chr5	24749453	.	T	C	.	multi_event_alt_allele_in_normal	ECNT=2;HCNT=4;MAX_ED=1;MIN_ED=1;NLOD=5.73;TLOD=8.91	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:40,3:0.077:1:2:0.333:0|1:24749453_T_C:1295,102:23:17	0/0:35,1:0.029:1:0:1.00:0|1:24749453_T_C:1154,35:15:20
chr5	24749454	.	G	C	.	multi_event_alt_allele_in_normal	ECNT=2;HCNT=4;MAX_ED=1;MIN_ED=1;NLOD=5.73;TLOD=8.91	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:40,3:0.077:1:2:0.333:0|1:24749453_T_C:1444,102:23:17	0/0:36,1:0.029:1:0:1.00:0|1:24749453_T_C:1290,37:15:21
chr5	25909969	rs7731547	A	T	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.24;TLOD=30.34	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:19,10:0.370:7:3:0.300:589,333:11:8	0/0:16,1:0.059:1:0:0.00:515,34:8:8
chr5	28927560	.	C	T	.	germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=8.95	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,3:0.429:1:2:0.667:114,96:1:3	0/0:4,0:0.00:0:0:.:114,0:2:2
chr5	29002264	rs36080912	T	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.36;TLOD=12.28	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:8,4:0.333:1:3:0.250:259,137:4:4	0/0:9,0:0.00:0:0:.:271,0:5:4
chr5	29848783	rs10068185	G	A	.	germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=2.71;TLOD=18.64	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:5,6:0.545:3:3:0.500:171,191:4:1	0/0:12,0:0.00:0:0:.:411,0:7:5
chr5	29881937	rs2115185	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.82;TLOD=27.32	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:8,9:0.529:5:4:0.556:279,282:5:3	0/0:17,0:0.00:0:0:.:604,0:9:8
chr5	29882177	rs2288448	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.01;TLOD=22.00	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:5,7:0.583:2:5:0.286:143,222:1:4	0/0:10,0:0.00:0:0:.:285,0:7:3
chr5	32087122	rs157494	C	T	.	alt_allele_in_normal;clustered_events	DB;ECNT=2;HCNT=18;MAX_ED=25;MIN_ED=25;NLOD=5.43;TLOD=185.28	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:116,70:0.371:39:31:0.443:3908,2300:59:57	0/0:102,7:0.063:3:4:0.571:3472,235:41:61
chr5	32087147	rs157495	A	G	.	alt_allele_in_normal;clustered_events	DB;ECNT=2;HCNT=24;MAX_ED=25;MIN_ED=25;NLOD=8.65;TLOD=194.59	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:126,83:0.387:43:40:0.482:4140,2482:65:61	0/0:120,10:0.063:3:7:0.700:3952,306:52:68
chr5	32089952	.	GTCC	G	.	str_contraction	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=24.03;RPA=5,4;RU=TCC;STR;TLOD=6.94	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:183,3:0.017:1:2:.:5547,95:91:92	0/0:97,1:0.011:1:0:.:2959,29:42:55
chr5	33682923	rs62352065	G	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=20.29	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:6,7:0.538:4:3:0.571:199,207:1:5	0/0:7,0:0.00:0:0:.:246,0:5:2
chr5	33998778	rs2287939	A	G	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.81;TLOD=100.74	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:61,39:0.395:24:15:0.385:2023,1270:26:35	0/0:45,3:0.067:2:1:0.333:1515,93:24:21
chr5	35032664	rs237252	G	A	.	germline_risk;t_lod_fstar	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=5.99	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:3,2:0.400:1:1:0.500:100,65:2:1	0/0:5,0:0.00:0:0:.:167,0:2:3
chr5	35795636	rs716971	T	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.61;TLOD=15.55	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:7,5:0.417:2:3:0.400:218,167:4:3	0/0:12,0:0.00:0:0:.:372,0:7:5
chr5	35861166	rs969129	T	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=6.59	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:3,2:0.400:0:2:0.00:97,71:3:0	0/0:5,0:0.00:0:0:.:160,0:3:2
chr5	35871171	rs2228141	C	T	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.84;TLOD=53.48	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:17,19:0.515:7:12:0.632:508,617:6:11	0/0:17,1:0.056:0:1:1.00:478,31:9:8
chr5	39375216	rs62358391	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=9.25	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,3:0.429:0:3:0.00:135,99:3:1	0/0:5,0:0.00:0:0:.:167,0:1:4
chr5	39392579	.	G	A	.	clustered_events;germline_risk;homologous_mapping_event	ECNT=4;HCNT=4;MAX_ED=23;MIN_ED=1;NLOD=1.81;TLOD=19.82	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:4,5:0.556:2:3:0.400:0|1:39392579_G_A:130,169:2:2	0/0:6,0:0.00:0:0:.:0|1:39392579_G_A:203,0:2:4
chr5	39392580	.	A	G	.	clustered_events;germline_risk;homologous_mapping_event	ECNT=4;HCNT=4;MAX_ED=23;MIN_ED=1;NLOD=1.81;TLOD=19.82	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:3,5:0.556:2:3:0.600:0|1:39392579_G_A:100,168:1:2	0/0:6,0:0.00:0:0:.:0|1:39392579_G_A:190,0:2:4
chr5	39392589	.	G	A	.	clustered_events;germline_risk;homologous_mapping_event	ECNT=4;HCNT=4;MAX_ED=23;MIN_ED=1;NLOD=1.20;TLOD=20.20	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:2,4:0.625:2:2:0.500:0|1:39392579_G_A:68,134:1:1	0/0:3,0:0.00:0:0:.:0|1:39392579_G_A:96,0:1:2
chr5	39392602	rs79185156	C	A	.	clustered_events;germline_risk;homologous_mapping_event	DB;ECNT=4;HCNT=4;MAX_ED=23;MIN_ED=1;NLOD=0.901;TLOD=13.35	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,4:0.667:2:2:0.500:56,131:1:1	0/0:3,0:0.00:0:0:.:73,0:1:2
chr5	40854580	rs1697938	T	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=19.12	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:7,7:0.500:1:6:0.143:226,200:3:4	0/0:7,0:0.00:0:0:.:216,0:2:5
chr5	41018350	rs10054110	A	T	.	germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=4.21;TLOD=17.48	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:22,6:0.240:5:1:0.167:720,206:12:10	0/0:17,0:0.00:0:0:.:560,0:8:9
chr5	41057315	.	G	C	.	germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=8.23	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:5,3:0.375:2:1:0.667:159,91:2:3	0/0:7,0:0.00:0:0:.:238,0:6:1
chr5	41149045	rs5024275	C	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.41;TLOD=22.46	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:9,7:0.438:5:2:0.286:284,239:7:2	0/0:8,0:0.00:0:0:.:276,0:2:6
chr5	41160196	.	GAC	G	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=22.85;RPA=5,4;RU=AC;STR;TLOD=5.19	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:163,3:0.021:2:1:.:5724,103:93:70	0/0:92,0:0.00:0:0:.:3255,0:43:49
chr5	41910966	rs78886931	C	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=32.86	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:5,12:0.667:6:6:0.500:172,391:5:0	0/0:7,0:0.00:0:0:.:245,0:3:4
chr5	42565741	rs12521020	C	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=23.53	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:3,7:0.700:6:1:0.143:97,230:3:0	0/0:4,0:0.00:0:0:.:134,0:1:3
chr5	43207278	.	GGA	G	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.11;RPA=5,4;RU=GA;STR;TLOD=4.07	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:59,2:0.034:1:1:.:1993,69:26:33	0/0:18,0:0.00:0:0:.:590,0:13:5
chr5	43381782	.	A	G	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=7.82;TLOD=4.03	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:47,2:0.041:2:0:0.00:1586,67:28:19	0/0:26,0:0.00:0:0:.:878,0:13:13
chr5	43527279	rs71629179	T	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=6.85	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,2:0.500:1:1:0.500:66,71:1:1	0/0:4,0:0.00:0:0:.:137,0:3:1
chr5	44388612	.	AAGC	A	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=16.18;RPA=6,5;RU=AGC;STR;TLOD=5.21	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:65,2:0.034:2:0:.:2201,67:30:35	0/0:62,0:0.00:0:0:.:2090,0:28:34
chr5	45261824	.	A	G	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.42;TLOD=4.64	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:46,2:0.042:0:2:1.00:1399,73:25:21	0/0:18,0:0.00:0:0:.:555,0:7:11
chr5	50829860	.	CCT	C	.	alt_allele_in_normal;str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.40;RPA=6,5;RU=CT;STR;TLOD=5.90	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:57,3:0.055:3:0:.:1889,102:36:21	0/0:38,2:0.054:1:1:.:1257,62:22:16
chr5	52939752	rs10940280	A	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.71;TLOD=35.21	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:7,11:0.611:9:2:0.182:229,352:4:3	0/0:9,0:0.00:0:0:.:297,0:2:7
chr5	55552212	.	A	G	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.72;TLOD=4.83	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:29,2:0.065:0:2:1.00:944,71:11:18	0/0:21,0:0.00:0:0:.:702,0:12:9
chr5	55664781	rs4865614	A	G	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.08;TLOD=60.37	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:13,19:0.581:7:12:0.632:437,670:7:6	0/0:32,2:0.063:1:1:0.500:1084,66:13:19
chr5	55908262	.	C	T	.	alt_allele_in_normal;germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.14;TLOD=86.40	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:31,34:0.483:12:22:0.647:1047,1093:11:20	0/0:20,1:0.050:0:1:1.00:685,34:13:7
chr5	55916528	rs34954805	G	A	.	germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=4.21;TLOD=34.97	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:12,11:0.478:5:6:0.455:419,370:8:4	0/0:14,0:0.00:0:0:.:484,0:5:9
chr5	56504896	.	A	T	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=11.14;TLOD=4.72	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:73,3:0.045:2:1:0.333:2344,97:41:32	0/0:41,1:0.024:1:0:0.00:1294,35:21:20
chr5	56911353	.	C	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=13.85;TLOD=5.65	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:79,4:0.039:2:2:0.500:2709,131:37:42	0/0:47,0:0.00:0:0:.:1662,0:21:26
chr5	58459876	rs3211270	C	T	.	PASS	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.81;TLOD=57.47	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:17,20:0.528:12:8:0.400:519,623:12:5	0/0:16,0:0.00:0:0:.:495,0:9:7
chr5	59988870	rs1983174	T	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=6.40	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,2:0.333:1:1:0.500:137,71:3:1	0/0:4,0:0.00:0:0:.:125,0:1:3
chr5	60945315	rs158921	G	A	.	alt_allele_in_normal	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.05;TLOD=66.65	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:17,22:0.541:9:13:0.409:593,751:11:6	0/0:23,1:0.043:1:0:1.00:793,34:11:12
chr5	61687200	rs13188780	G	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=10.87	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,3:0.600:1:2:0.333:70,109:1:1	0/0:4,0:0.00:0:0:.:134,0:2:2
chr5	64800343	rs6449760	G	T	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=0.874;TLOD=77.41	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:38,28:0.397:15:13:0.536:1304,935:19:19	0/0:27,2:0.069:2:0:1.00:923,69:15:12
chr5	64801318	rs7735338	C	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=20.55	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:7,9:0.500:5:4:0.444:237,319:3:4	0/0:8,0:0.00:0:0:.:283,0:2:6
chr5	65224787	rs2287906	T	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=6.55	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,2:0.500:2:0:1.00:65,68:2:0	0/0:5,0:0.00:0:0:.:156,0:2:3
chr5	65672343	.	ATT	A	.	germline_risk;t_lod_fstar	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=1.25;RPA=10,8;RU=T;STR;TLOD=4.28	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,2:0.400:2:0:.:33,67:0:1	0/0:3,0:0.00:0:0:.:0,0:0:0
chr5	69069213	rs2451843	T	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=6.34	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:5,2:0.286:1:1:0.500:159,72:2:3	0/0:5,0:0.00:0:0:.:156,0:2:3
chr5	69195887	.	T	TAGTCAAG	.	germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;RPA=1,2;RU=AGTCAAG;STR;TLOD=13.50	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:0,2:1.00:2:0:.:0,62:0:0	0/0:6,0:0.00:0:0:.:188,0:2:4
chr5	69235426	rs2972388	C	T	.	alt_allele_in_normal;germline_risk;t_lod_fstar	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=5.75	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:0,2:1.00:1:1:0.500:0,64:0:0	0/0:17,1:0.063:1:0:0.00:557,33:4:13
chr5	71720635	.	CA	C	.	germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=12.42	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:11,4:0.267:1:3:.:397,140:1:10	0/0:4,0:0.00:0:0:.:144,0:3:1
chr5	72107479	rs3112402	T	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=13.05	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,4:0.667:3:1:0.750:58,128:1:1	0/0:8,0:0.00:0:0:.:239,0:6:2
chr5	72886916	.	A	G	.	germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=7.85	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,3:0.429:3:0:0.00:126,85:3:1	0/0:3,0:0.00:0:0:.:92,0:2:1
chr5	72893059	.	C	T	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.12;TLOD=4.23	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:37,2:0.051:1:1:0.500:1198,67:20:17	0/0:17,0:0.00:0:0:.:575,0:14:3
chr5	73572721	rs1220634	A	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.41;TLOD=26.10	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:8,8:0.500:4:4:0.500:263,271:5:3	0/0:8,0:0.00:0:0:.:264,0:3:5
chr5	73580210	rs343120	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=19.22	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,6:0.600:2:4:0.333:137,193:3:1	0/0:4,0:0.00:0:0:.:138,0:2:2
chr5	73869905	.	C	CA	.	alt_allele_in_normal;germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.609;RPA=9,10;RU=A;STR;TLOD=9.32	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,5:0.750:2:3:.:64,164:1:1	0/0:6,1:0.143:1:0:.:216,32:2:4
chr5	74801727	rs17670897	T	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=36.14	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,10:0.833:4:6:0.400:69,338:1:1	0/0:6,0:0.00:0:0:.:205,0:4:2
chr5	74990637	rs75042981	C	T	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=0.667;TLOD=63.63	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:15,21:0.571:15:6:0.286:423,678:7:8	0/0:27,2:0.071:2:0:0.00:761,68:16:11
chr5	75006833	rs4555772	A	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=15.80	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,6:0.556:5:1:0.167:131,187:1:3	0/0:7,0:0.00:0:0:.:231,0:4:3
chr5	75028723	rs3811987	G	A	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.507;TLOD=125.14	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:50,45:0.488:35:10:0.778:1706,1439:29:21	0/0:40,3:0.075:2:1:0.667:1353,101:20:20
chr5	75029077	rs4704166	C	T	.	PASS	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.62;TLOD=127.73	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:35,43:0.547:25:18:0.419:1060,1373:16:19	0/0:22,0:0.00:0:0:.:644,0:7:15
chr5	75343751	.	C	CAA	.	germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=7.34	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,2:0.333:0:2:.:138,70:4:0	0/0:4,0:0.00:0:0:.:133,0:2:2
chr5	75359901	rs3846663	C	T	.	PASS	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.72;TLOD=63.30	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:19,21:0.525:11:10:0.476:648,650:9:10	0/0:19,0:0.00:0:0:.:644,0:6:13
chr5	75385948	rs698912	T	C	.	PASS	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.41;TLOD=30.21	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:6,9:0.600:4:5:0.444:197,303:2:4	0/0:8,0:0.00:0:0:.:266,0:6:2
chr5	76280891	rs4352583	A	G	.	clustered_events;germline_risk	DB;ECNT=2;HCNT=1;MAX_ED=13;MIN_ED=13;NLOD=0.939;TLOD=40.68	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:3,10:0.769:4:6:0.600:0|1:76280891_A_G:96,332:2:1	0/0:13,0:0.063:0:0:.:0|1:76280891_A_G:428,0:6:7
chr5	76280904	rs4496693	T	C	.	alt_allele_in_normal;clustered_events;germline_risk	DB;ECNT=2;HCNT=1;MAX_ED=13;MIN_ED=13;NLOD=0.939;TLOD=46.61	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:3,11:0.800:5:6:0.455:0|1:76280891_A_G:100,356:2:1	0/0:14,1:0.063:1:0:1.00:0|1:76280891_A_G:475,34:6:8
chr5	76461731	rs10045155	C	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.71;TLOD=21.84	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:8,7:0.467:6:1:0.143:226,230:4:4	0/0:9,0:0.00:0:0:.:248,0:6:3
chr5	76953711	.	C	G	.	PASS	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.01;TLOD=36.83	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:6,11:0.688:4:7:0.636:177,359:1:5	0/0:10,0:0.00:0:0:.:280,0:6:4
chr5	77464670	rs410620	T	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.71;TLOD=29.99	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:10,9:0.474:6:3:0.667:315,314:5:5	0/0:9,0:0.00:0:0:.:278,0:5:4
chr5	77583188	.	A	AT	.	germline_risk;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.819;RPA=1,2;RU=T;STR;TLOD=4.39	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,3:0.429:1:2:.:126,94:1:3	0/0:3,0:0.00:0:0:.:98,0:1:2
chr5	79447157	rs6862358	G	A	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.44;TLOD=61.51	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:24,21:0.455:14:7:0.667:825,690:13:11	0/0:22,1:0.048:0:1:0.00:777,34:15:7
chr5	79728922	.	G	C	.	t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=9.93;TLOD=4.04	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:52,2:0.037:2:0:1.00:1805,68:28:24	0/0:33,0:0.00:0:0:.:1172,0:17:16
chr5	79729536	.	A	G	.	t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=6.92;TLOD=4.35	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:51,2:0.042:1:1:0.500:1595,70:25:26	0/0:23,0:0.00:0:0:.:719,0:14:9
chr5	80058879	.	C	T	.	clustered_events;germline_risk	ECNT=2;HCNT=16;MAX_ED=26;MIN_ED=26;NLOD=2.10;TLOD=40.14	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:12,13:0.520:7:6:0.462:326,414:6:6	0/0:7,0:0.00:0:0:.:181,0:3:4
chr5	80058905	rs434409	C	T	.	clustered_events;germline_risk	DB;ECNT=2;HCNT=16;MAX_ED=26;MIN_ED=26;NLOD=1.80;TLOD=34.40	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:8,12:0.600:6:6:0.500:227,345:4:4	0/0:6,0:0.00:0:0:.:168,0:2:4
chr5	80065579	.	CATAAT	C	.	germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=26.77	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:9,7:0.438:4:3:.:329,249:4:5	0/0:5,0:0.00:0:0:.:184,0:4:1
chr5	80076950	.	GTGA	G	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=24;MAX_ED=.;MIN_ED=.;NLOD=53.79;RPA=5,4;RU=TGA;STR;TLOD=5.99	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:380,3:8.427e-03:1:2:.:13123,109:194:186	0/0:210,1:5.155e-03:1:0:.:7322,36:111:99
chr5	80082624	.	T	TC	.	PASS	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=4.19;RPA=7,8;RU=C;STR;TLOD=12.21	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:10,9:0.474:4:5:.:298,274:4:6	0/0:14,0:0.00:0:0:.:404,0:7:7
chr5	81109011	.	C	T	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=9.63;TLOD=4.06	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:43,2:0.048:2:0:0.00:1393,66:24:19	0/0:34,0:0.00:0:0:.:1142,0:13:21
chr5	81250940	.	A	AACACACACACACAC	.	germline_risk;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.37;RPA=19,26;RU=AC;STR;TLOD=4.35	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:6,3:0.300:1:1:.:0,69:0:0	0/0:5,0:0.00:0:0:.:0,0:0:0
chr5	81489192	rs66563423	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.71;TLOD=9.15	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,3:0.600:3:0:1.00:68,93:1:1	0/0:9,0:0.00:0:0:.:330,0:5:4
chr5	83554979	.	A	G	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=7.06;TLOD=4.00	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:79,2:0.028:2:0:0.00:2531,70:47:32	0/0:39,1:0.027:1:0:0.00:1279,36:20:19
chr5	86087625	rs961813	G	A	.	clustered_events;germline_risk	DB;ECNT=2;HCNT=2;MAX_ED=65;MIN_ED=65;NLOD=1.81;TLOD=25.30	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:9,8:0.500:6:2:0.750:309,263:5:4	0/0:9,0:0.00:0:0:.:315,0:4:5
chr5	86087690	.	C	T	.	clustered_events;germline_risk	DB;ECNT=2;HCNT=2;MAX_ED=65;MIN_ED=65;NLOD=3.31;TLOD=21.28	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:11,9:0.412:7:2:0.222:386,301:7:4	0/0:12,0:0.00:0:0:.:419,0:5:7
chr5	87412823	rs2266692	C	A	.	PASS	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.02;TLOD=59.94	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:23,20:0.500:12:8:0.400:752,624:12:11	0/0:21,0:0.00:0:0:.:747,0:13:8
chr5	88919321	.	A	G	.	alt_allele_in_normal;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.12;TLOD=5.66	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:28,3:0.097:1:2:0.667:886,101:14:14	0/0:17,1:0.056:1:0:0.00:557,29:8:9
chr5	94912932	.	C	T	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=27.38;TLOD=4.32	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:212,3:0.017:1:2:0.667:6614,95:130:82	0/0:105,0:0.00:0:0:.:3280,0:56:49
chr5	96742605	rs26503	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.71;TLOD=19.34	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,6:0.600:2:4:0.333:115,194:3:1	0/0:9,0:0.00:0:0:.:244,0:6:3
chr5	96762191	rs27980	T	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=7.15	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,3:0.429:0:3:0.00:138,78:0:4	0/0:4,0:0.00:0:0:.:133,0:1:3
chr5	96781236	rs27042	G	A	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.08;TLOD=76.60	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:17,24:0.575:10:14:0.417:558,811:7:10	0/0:31,2:0.063:0:2:0.00:1048,66:17:14
chr5	96790207	rs26510	C	T	.	germline_risk;t_lod_fstar	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=5.90	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,2:0.333:0:2:1.00:137,66:3:1	0/0:7,0:0.00:0:0:.:244,0:3:4
chr5	98882127	.	T	C	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.61;TLOD=4.16	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:28,2:0.074:1:1:0.500:886,63:12:16	0/0:13,0:0.00:0:0:.:405,0:10:3
chr5	100380129	.	T	A	.	PASS	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.72;TLOD=8.94	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:24,5:0.179:2:3:0.400:764,138:13:11	0/0:21,0:0.00:0:0:.:666,0:12:9
chr5	100535507	.	T	G	.	alt_allele_in_normal;germline_risk	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=1.55;TLOD=8.35	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:100,41:0.298:20:21:0.488:2570,212:59:41	0/0:57,21:0.276:13:8:0.619:1413,76:32:25
chr5	102390944	rs6874612	C	A	.	t_lod_fstar	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=7.52;TLOD=4.07	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:54,2:0.038:2:0:0.00:1844,69:31:23	0/0:25,0:0.00:0:0:.:861,0:12:13
chr5	102914168	.	TATC	T	.	germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=12.53	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,3:0.750:2:1:.:24,95:1:0	0/0:4,0:0.00:0:0:.:128,0:2:2
chr5	103007286	rs45518833	T	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=21.41	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,6:0.857:1:5:0.167:31,198:1:0	0/0:7,0:0.00:0:0:.:209,0:3:4
chr5	103009842	rs11544128	A	C	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.08;TLOD=81.74	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:33,35:0.508:14:21:0.600:1050,1001:16:17	0/0:30,3:0.094:1:2:0.667:986,57:17:13
chr5	103025043	rs17296280	A	C	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.637;TLOD=23.90	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:14,8:0.364:6:2:0.250:444,265:5:9	0/0:14,1:0.067:0:1:1.00:456,34:10:4
chr5	103087872	rs468844	A	G	.	clustered_events;germline_risk	DB;ECNT=2;HCNT=1;MAX_ED=3;MIN_ED=3;NLOD=3.31;TLOD=15.92	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:3,4:0.571:3:1:0.250:0|1:103087872_A_G:99,142:2:1	0/0:9,0:0.00:0:0:.:0|1:103087872_A_G:302,0:6:3
chr5	103087875	rs469094	A	C	.	clustered_events;germline_risk	DB;ECNT=2;HCNT=1;MAX_ED=3;MIN_ED=3;NLOD=3.31;TLOD=15.92	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:3,4:0.571:3:1:0.250:0|1:103087872_A_G:102,137:2:1	0/0:11,0:0.00:0:0:.:0|1:103087872_A_G:373,0:7:4
chr5	103558972	rs34468716	T	C	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.75;TLOD=124.36	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:27,40:0.581:17:23:0.425:856,1397:16:11	0/0:30,1:0.034:0:1:0.00:968,35:11:19
chr5	108946291	.	AAT	A	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=6.49;RPA=6,5;RU=AT;STR;TLOD=4.07	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:24,2:0.077:2:0:.:782,68:18:6	0/0:22,0:0.00:0:0:.:733,0:14:8
chr5	113027511	.	T	C	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=13.54;TLOD=4.10	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:77,2:0.028:2:0:1.00:2440,71:43:34	0/0:49,0:0.00:0:0:.:1545,0:28:21
chr5	113104062	rs13173830	T	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.31;TLOD=17.17	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,5:0.714:4:1:0.800:65,166:2:0	0/0:11,0:0.00:0:0:.:346,0:6:5
chr5	115179891	rs2278695	A	G	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.44;TLOD=55.16	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:14,16:0.533:8:8:0.500:443,566:8:6	0/0:17,1:0.056:1:0:0.00:561,35:10:7
chr5	115212374	.	T	TC	.	alt_allele_in_normal	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=12.26;RPA=6,7;RU=C;STR;TLOD=23.75	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:36,14:0.306:5:9:.:1127,447:21:15	0/0:49,2:0.020:0:2:.:1582,64:30:19
chr5	115275659	rs267295	A	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=31.81	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:5,9:0.643:4:5:0.556:160,315:3:2	0/0:7,0:0.00:0:0:.:228,0:3:4
chr5	116092742	rs6894046	T	A	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.24;TLOD=66.84	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:14,20:0.606:15:5:0.750:455,670:5:9	0/0:19,1:0.050:1:0:1.00:622,33:10:9
chr5	116217983	rs6872730	C	T	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.34;TLOD=89.76	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:31,35:0.500:18:17:0.486:1061,1134:17:14	0/0:18,1:0.059:1:0:0.00:640,33:12:6
chr5	116475524	rs423834	T	C	.	clustered_events;germline_risk	DB;ECNT=2;HCNT=2;MAX_ED=53;MIN_ED=53;NLOD=1.81;TLOD=12.89	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:7,4:0.400:1:3:0.250:229,139:5:2	0/0:7,0:0.00:0:0:.:219,0:2:5
chr5	116475577	rs17432496	C	T	.	clustered_events;germline_risk	DB;ECNT=2;HCNT=2;MAX_ED=53;MIN_ED=53;NLOD=1.80;TLOD=19.05	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:7,7:0.500:2:5:0.714:222,232:4:3	0/0:6,0:0.00:0:0:.:182,0:2:4
chr5	116479953	rs73270774	G	C	.	germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=6.59	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:3,2:0.400:1:1:0.500:108,71:2:1	0/0:5,0:0.00:0:0:.:172,0:2:3
chr5	119127984	rs4286709	C	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=15.82	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,5:0.625:3:2:0.400:137,161:1:3	0/0:6,0:0.00:0:0:.:206,0:4:2
chr5	119356042	rs3797340	C	G	.	clustered_events;germline_risk;homologous_mapping_event	DB;ECNT=3;HCNT=8;MAX_ED=95;MIN_ED=47;NLOD=1.81;TLOD=16.65	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,7:0.778:4:3:0.429:64,151:1:1	0/0:6,0:0.00:0:0:.:201,0:5:1
chr5	119356089	rs3797341	T	C	.	clustered_events;germline_risk;homologous_mapping_event	DB;ECNT=3;HCNT=8;MAX_ED=95;MIN_ED=47;NLOD=3.61;TLOD=21.90	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:13,9:0.389:5:4:0.556:419,303:6:7	0/0:12,0:0.00:0:0:.:398,0:8:4
chr5	119356137	rs3797342	C	T	.	clustered_events;germline_risk;homologous_mapping_event	DB;ECNT=3;HCNT=8;MAX_ED=95;MIN_ED=47;NLOD=3.01;TLOD=21.97	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:11,7:0.438:3:4:0.571:397,234:3:8	0/0:11,0:0.00:0:0:.:376,0:7:4
chr5	119502139	rs55708333	A	G	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.84;TLOD=62.09	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:15,19:0.559:9:10:0.526:499,632:8:7	0/0:21,1:0.045:1:0:0.00:706,33:9:12
chr5	119527040	rs73251672	T	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.71;TLOD=15.31	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:0,4:1.00:3:1:0.750:0,134:0:0	0/0:9,0:0.00:0:0:.:303,0:5:4
chr5	121671480	rs6897553	G	C	.	germline_risk;t_lod_fstar	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=5.79	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:8,2:0.333:0:2:0.00:280,65:6:2	0/0:7,0:0.00:0:0:.:228,0:4:3
chr5	123401455	.	A	G	.	alt_allele_in_normal	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.61;TLOD=61.27	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:31,25:0.426:7:18:0.720:1003,726:22:9	0/0:37,2:0.054:1:1:0.500:1199,56:16:21
chr5	124638008	rs6896590	T	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.81;TLOD=41.95	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:5,14:0.737:9:5:0.643:164,401:3:2	0/0:16,0:0.00:0:0:.:513,0:6:10
chr5	127172298	.	C	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.41;TLOD=17.58	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:10,7:0.400:3:4:0.571:348,224:8:2	0/0:8,0:0.00:0:0:.:276,0:6:2
chr5	128966278	rs2577541	T	C	.	alt_allele_in_normal	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.18;TLOD=151.82	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:85,58:0.422:28:30:0.483:2742,1749:51:34	0/0:69,5:0.072:4:1:0.800:2265,152:39:30
chr5	129528447	.	ATTG	A	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.51;RPA=6,5;RU=TTG;STR;TLOD=5.98	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:23,2:0.080:1:1:.:672,64:9:14	0/0:15,0:0.00:0:0:.:466,0:6:9
chr5	132700560	rs1468216	T	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.41;TLOD=6.55	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,2:0.500:1:1:0.500:65,68:1:1	0/0:8,0:0.00:0:0:.:261,0:3:5
chr5	132893291	rs3815152	G	A	.	germline_risk;t_lod_fstar	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.66;TLOD=5.95	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,2:0.500:1:1:0.500:70,62:0:2	0/0:9,0:0.00:0:0:.:280,0:6:3
chr5	132943493	.	C	T	.	germline_risk;t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=5.10	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,2:0.333:2:0:0.00:139,58:0:4	0/0:7,0:0.00:0:0:.:243,0:4:3
chr5	134422886	.	A	T	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.71;TLOD=5.53	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:20,3:0.143:1:2:0.667:614,86:10:10	0/0:9,0:0.00:0:0:.:287,0:4:5
chr5	134562139	rs329304	C	T	.	PASS	DB;ECNT=1;HCNT=6;MAX_ED=.;MIN_ED=.;NLOD=6.92;TLOD=66.61	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:39,24:0.371:13:11:0.458:1346,770:24:15	0/0:23,0:0.00:0:0:.:790,0:10:13
chr5	135010614	rs877812	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.31;TLOD=31.89	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:18,11:0.393:8:3:0.727:611,348:8:10	0/0:11,0:0.00:0:0:.:374,0:7:4
chr5	136992678	rs3777224	C	T	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.34;TLOD=45.58	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:8,14:0.636:8:6:0.429:219,452:4:4	0/0:16,1:0.059:0:1:1.00:455,33:9:7
chr5	138391627	.	T	C	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=19.82;TLOD=4.04	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:103,3:0.031:3:0:1.00:3368,84:57:46	0/0:67,0:0.00:0:0:.:2169,0:34:33
chr5	138465943	.	ACAG	A	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=16.82;RPA=6,5;RU=CAG;STR;TLOD=5.09	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:67,2:0.029:2:0:.:2101,63:30:37	0/0:56,0:0.00:0:0:.:1687,0:20:36
chr5	139381950	.	C	T	.	PASS	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.01;TLOD=38.74	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:10,12:0.545:5:7:0.583:309,396:6:4	0/0:10,0:0.00:0:0:.:327,0:5:5
chr5	139822815	rs35306338	A	G	.	alt_allele_in_normal	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=7.56;TLOD=96.25	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:13,31:0.683:17:14:0.452:415,1027:6:7	0/0:39,2:0.027:0:2:1.00:1243,61:18:21
chr5	140362545	.	GGT	G	.	alt_allele_in_normal;str_contraction	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=9.25;RPA=6,5;RU=GT;STR;TLOD=8.54	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:81,6:0.063:5:1:.:2723,205:37:44	0/0:60,3:0.048:2:1:.:2040,102:34:26
chr5	140642268	.	CT	C	.	germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=9.36	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:6,3:0.333:1:2:.:206,99:3:3	0/0:5,0:0.00:0:0:.:170,0:3:2
chr5	140705805	.	CGT	C	.	alt_allele_in_normal;str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.28;RPA=7,6;RU=GT;STR;TLOD=5.81	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:39,3:0.075:2:1:.:1092,72:30:9	0/0:29,1:0.034:0:1:.:809,28:22:7
chr5	140801356	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=2;HCNT=2;MAX_ED=6;MIN_ED=6;NLOD=8.53;TLOD=12.24	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:223,5:0.024:3:2:0.600:0|1:140801356_G_A:7477,163:113:110	0/0:132,7:0.053:1:6:0.143:0|1:140801356_G_A:4458,225:70:62
chr5	140801362	.	G	T	.	alt_allele_in_normal;clustered_events	ECNT=2;HCNT=2;MAX_ED=6;MIN_ED=6;NLOD=8.53;TLOD=12.20	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:217,5:0.023:3:2:0.600:0|1:140801356_G_A:7442,160:109:108	0/0:132,8:0.059:1:7:0.125:0|1:140801356_G_A:4491,260:69:63
chr5	140809361	.	C	T	.	PASS	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=23.16;TLOD=14.51	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:129,10:0.060:6:4:0.400:3922,301:65:64	0/0:79,0:0.00:0:0:.:2353,0:52:27
chr5	140828380	.	G	C	.	alt_allele_in_normal	ECNT=1;HCNT=6;MAX_ED=.;MIN_ED=.;NLOD=3.72;TLOD=29.79	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:374,28:0.061:13:15:0.464:11531,915:215:159	0/0:355,72:0.140:32:40:0.444:10987,2239:178:177
chr5	140829324	.	T	C	.	alt_allele_in_normal;t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=17.56;TLOD=4.57	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:366,5:0.015:2:3:0.400:11501,175:197:169	0/0:238,39:0.138:24:15:0.615:7458,1249:124:114
chr5	140841692	.	A	G	.	alt_allele_in_normal;clustered_events	ECNT=3;HCNT=16;MAX_ED=5;MIN_ED=4;NLOD=38.33;TLOD=13.12	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:225,7:0.031:3:4:0.571:0|1:140841692_A_G:6791,214:116:109	0/0:171,3:0.018:2:1:0.333:0|1:140841692_A_G:4995,100:90:81
chr5	140841696	.	T	C	.	clustered_events;multi_event_alt_allele_in_normal	ECNT=3;HCNT=16;MAX_ED=5;MIN_ED=4;NLOD=43.95;TLOD=10.51	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:225,4:0.022:1:3:0.250:0|1:140841692_A_G:6517,130:112:113	0/0:163,1:6.211e-03:1:0:1.00:0|1:140841692_A_G:4468,22:85:78
chr5	140841697	.	G	A	.	clustered_events;multi_event_alt_allele_in_normal	ECNT=3;HCNT=16;MAX_ED=5;MIN_ED=4;NLOD=42.45;TLOD=9.35	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:220,3:0.018:1:2:0.333:0|1:140841692_A_G:6338,85:109:111	0/0:156,1:6.410e-03:1:0:1.00:0|1:140841692_A_G:4412,28:81:75
chr5	140848888	.	A	G	.	alt_allele_in_normal	ECNT=1;HCNT=3;MAX_ED=.;MIN_ED=.;NLOD=14.29;TLOD=9.35	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:266,10:0.035:3:7:0.700:8660,288:136:130	0/0:149,21:0.119:9:12:0.571:4854,646:76:73
chr5	141096179	.	C	G	.	alt_allele_in_normal;clustered_events	ECNT=7;HCNT=43;MAX_ED=211;MIN_ED=57;NLOD=50.26;TLOD=36.55	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:293,18:0.058:9:9:0.500:8782,587:109:184	0/0:298,4:0.014:1:3:0.750:9184,127:113:185
chr5	141096236	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=7;HCNT=33;MAX_ED=211;MIN_ED=57;NLOD=32.64;TLOD=17.36	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:342,19:0.051:9:10:0.474:10449,575:162:180	0/0:276,21:0.067:8:13:0.381:8226,663:110:166
chr5	141096278	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=7;HCNT=43;MAX_ED=211;MIN_ED=57;NLOD=6.57;TLOD=32.04	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:396,23:0.060:10:13:0.435:13317,740:179:217	0/0:285,19:0.068:8:11:0.421:9501,604:128:157
chr5	141096318	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=7;HCNT=42;MAX_ED=211;MIN_ED=57;NLOD=43.80;TLOD=22.47	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:374,13:0.034:3:10:0.231:11844,362:163:211	0/0:217,9:0.047:7:2:0.778:6872,253:97:120
chr5	141096320	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=7;HCNT=31;MAX_ED=211;MIN_ED=57;NLOD=53.17;TLOD=6.36	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:370,7:0.020:1:6:0.143:11678,206:162:208	0/0:210,7:0.037:6:1:0.857:6693,221:93:117
chr5	141096374	.	G	T	.	alt_allele_in_normal;clustered_events	ECNT=7;HCNT=27;MAX_ED=211;MIN_ED=57;NLOD=28.03;TLOD=18.17	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:206,7:0.033:0:7:0.00:0|1:141096374_G_T:6646,229:105:101	0/0:146,3:0.021:1:2:0.333:0|1:141096374_G_T:4681,101:62:84
chr5	141096390	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=7;HCNT=27;MAX_ED=211;MIN_ED=57;NLOD=19.14;TLOD=32.14	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:159,13:0.076:2:11:0.154:0|1:141096374_G_T:5283,421:83:76	0/0:125,5:0.039:2:3:0.400:0|1:141096374_G_T:4130,165:56:69
chr5	141101268	rs12515688	G	A	.	PASS	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=8.76;TLOD=136.71	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:26,47:0.646:24:23:0.511:898,1524:13:13	0/0:42,1:0.024:0:1:0.00:1445,34:26:16
chr5	141123378	.	C	T	.	alt_allele_in_normal;t_lod_fstar	ECNT=1;HCNT=8;MAX_ED=.;MIN_ED=.;NLOD=56.34;TLOD=4.02	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:307,6:0.020:3:3:0.500:9478,188:136:171	0/0:276,3:0.012:2:1:0.333:8589,97:115:161
chr5	141123517	.	G	A	.	alt_allele_in_normal	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=65.65;TLOD=20.90	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:499,19:0.043:7:12:0.368:15668,576:240:259	0/0:331,9:0.030:4:5:0.444:10472,275:169:162
chr5	141151752	.	T	G	.	alt_allele_in_normal	ECNT=2;HCNT=13;MAX_ED=2;MIN_ED=2;NLOD=16.71;TLOD=9.41	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:355,5:0.015:4:1:0.800:0|1:141151752_T_G:11387,156:171:184	0/0:222,15:0.068:5:10:0.333:0|1:141151752_T_G:7158,502:106:116
chr5	141151754	.	T	C	.	alt_allele_in_normal	ECNT=2;HCNT=13;MAX_ED=2;MIN_ED=2;NLOD=16.71;TLOD=9.40	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:359,4:0.015:3:1:0.750:0|1:141151752_T_G:11839,129:174:185	0/0:225,15:0.068:5:10:0.333:0|1:141151752_T_G:7428,503:109:116
chr5	141151827	.	T	G	.	alt_allele_in_normal;clustered_events	ECNT=2;HCNT=6;MAX_ED=18;MIN_ED=18;NLOD=35.80;TLOD=35.24	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:295,14:0.043:4:10:0.286:9278,474:151:144	0/0:159,3:0.013:3:0:1.00:4984,99:79:80
chr5	141151845	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=2;HCNT=12;MAX_ED=18;MIN_ED=18;NLOD=2.32;TLOD=76.10	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:248,27:0.096:11:16:0.407:8173,876:127:121	0/0:127,14:0.090:9:5:0.643:4156,434:58:69
chr5	141158304	.	G	A	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.34;TLOD=35.57	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:8,11:0.579:4:7:0.364:266,360:2:6	0/0:19,1:0.050:0:1:0.00:635,32:7:12
chr5	141179615	.	G	T	.	alt_allele_in_normal	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=20.38;TLOD=8.21	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:251,7:0.030:3:4:0.429:8034,219:132:119	0/0:165,9:0.054:4:5:0.444:5309,295:84:81
chr5	141184278	.	T	C	.	alt_allele_in_normal	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=10.23;TLOD=8.87	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:88,7:0.099:6:1:0.857:2856,238:41:47	0/0:99,8:0.087:6:2:0.750:3198,274:63:36
chr5	141185019	rs10060104	C	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.46;TLOD=13.12	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,4:0.800:3:1:0.250:31,123:0:1	0/0:5,0:0.00:0:0:.:148,0:2:3
chr5	141189296	.	G	T	.	PASS	ECNT=1;HCNT=12;MAX_ED=.;MIN_ED=.;NLOD=50.19;TLOD=34.06	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:239,18:0.073:10:8:0.556:6904,577:134:105	0/0:197,1:5.319e-03:1:0:1.00:5630,33:88:109
chr5	141201394	.	T	G	.	alt_allele_in_normal	ECNT=1;HCNT=23;MAX_ED=.;MIN_ED=.;NLOD=26.89;TLOD=54.58	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:170,22:0.115:10:12:0.455:5666,761:83:87	0/0:152,5:0.033:1:4:0.200:5037,160:79:73
chr5	141210608	.	C	T	.	alt_allele_in_normal	ECNT=2;HCNT=3;MAX_ED=1;MIN_ED=1;NLOD=21.07;TLOD=9.39	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:219,4:0.019:4:0:0.00:0|1:141210608_C_T:7047,130:114:105	0/0:141,4:0.027:1:3:0.750:0|1:141210608_C_T:4561,125:58:83
chr5	141210609	.	G	A	.	alt_allele_in_normal	ECNT=2;HCNT=3;MAX_ED=1;MIN_ED=1;NLOD=21.07;TLOD=9.39	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:226,4:0.019:4:0:1.00:0|1:141210608_C_T:6651,128:117:109	0/0:141,4:0.027:1:3:0.250:0|1:141210608_C_T:4096,117:56:85
chr5	141214984	.	A	T	.	alt_allele_in_normal;clustered_events	ECNT=2;HCNT=24;MAX_ED=5;MIN_ED=5;NLOD=18.38;TLOD=14.21	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:198,8:0.042:8:0:0.00:0|1:141214984_A_T:6659,247:90:108	0/0:96,3:0.030:2:1:0.333:0|1:141214984_A_T:3233,88:55:41
chr5	141214989	.	TTGGC	T	.	alt_allele_in_normal;clustered_events	ECNT=2;HCNT=24;MAX_ED=5;MIN_ED=5;NLOD=18.39;TLOD=14.00	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:202,5:0.039:5:0:.:0|1:141214984_A_T:6689,139:93:109	0/0:95,3:0.030:2:1:.:0|1:141214984_A_T:3155,79:51:44
chr5	141345980	.	C	T	.	alt_allele_in_normal	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=24.01;TLOD=9.72	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:209,9:0.046:6:3:0.333:5581,287:100:109	0/0:143,8:0.052:4:4:0.500:4104,257:66:77
chr5	141375966	.	C	T	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=30.60;TLOD=5.64	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:196,5:0.026:2:3:0.600:5997,126:87:109	0/0:105,0:0.00:0:0:.:3229,0:53:52
chr5	141644156	rs468920	T	C	.	clustered_events;germline_risk	DB;ECNT=2;HCNT=1;MAX_ED=10;MIN_ED=10;NLOD=1.51;TLOD=7.54	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:3,2:0.400:2:0:1.00:0|1:141644156_T_C:101,71:2:1	0/0:5,0:0.00:0:0:.:0|1:141644156_T_C:164,0:4:1
chr5	141644166	rs467478	G	A	.	clustered_events;germline_risk	DB;ECNT=2;HCNT=1;MAX_ED=10;MIN_ED=10;NLOD=1.51;TLOD=7.34	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:4,2:0.333:2:0:1.00:0|1:141644156_T_C:135,64:3:1	0/0:5,0:0.00:0:0:.:0|1:141644156_T_C:171,0:4:1
chr5	141645323	.	T	TAGC	.	PASS	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.42;TLOD=22.40	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:10,6:0.375:2:4:.:315,190:4:6	0/0:8,0:0.00:0:0:.:254,0:3:5
chr5	141955356	rs2434322	C	T	.	alt_allele_in_normal	DB;ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=3.17;TLOD=142.66	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:55,51:0.479:34:17:0.333:1911,1694:35:20	0/0:52,4:0.060:0:4:1.00:1789,136:32:20
chr5	146267588	rs2963925	C	T	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.34;TLOD=26.91	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:17,9:0.346:7:2:0.222:589,299:9:8	0/0:15,1:0.063:1:0:0.00:525,30:7:8
chr5	146510465	rs4705103	A	G	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.17;TLOD=47.40	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:28,19:0.405:11:8:0.421:916,584:14:14	0/0:28,2:0.080:0:2:1.00:925,54:16:12
chr5	146697948	.	T	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=8.73;TLOD=5.09	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:39,1:0.048:0:1:0.00:1304,33:16:23	0/0:29,0:0.00:0:0:.:967,0:15:14
chr5	147405660	.	T	C	.	t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=56.58;TLOD=4.87	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:397,5:8.746e-03:1:4:0.200:13395,177:210:187	0/0:217,0:0.00:0:0:.:7316,0:112:105
chr5	147637125	.	AAG	A	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.37;RPA=7,6;RU=AG;STR;TLOD=6.19	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:25,3:0.107:1:2:.:840,101:12:13	0/0:18,0:0.00:0:0:.:605,0:9:9
chr5	149230713	rs2918265	C	A	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.48;TLOD=86.62	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:36,33:0.460:15:18:0.545:1255,1037:26:10	0/0:31,2:0.067:1:1:0.500:1083,66:19:12
chr5	149239401	rs34180939	G	A	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.55;TLOD=47.33	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:10,15:0.600:7:8:0.467:344,479:7:3	0/0:23,1:0.042:0:1:0.00:797,32:11:12
chr5	149626955	.	TCAGTGG	T	.	alt_allele_in_normal;germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=43.33	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:23,12:0.343:6:6:.:759,394:8:15	0/0:18,1:0.053:1:0:.:607,35:9:9
chr5	149836836	.	ACAG	A	.	alt_allele_in_normal;clustered_events;str_contraction	ECNT=2;HCNT=8;MAX_ED=57;MIN_ED=57;NLOD=11.32;RPA=5,4;RU=CAG;STR;TLOD=12.85	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:165,5:0.031:3:2:.:5208,155:80:85	0/0:80,3:0.038:2:1:.:2496,95:43:37
chr5	149836893	.	GGGA	G	.	clustered_events;str_contraction	ECNT=2;HCNT=8;MAX_ED=57;MIN_ED=57;NLOD=16.46;RPA=6,5;RU=GGA;STR;TLOD=11.98	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:99,5:0.048:1:4:.:3303,160:42:57	0/0:58,0:0.00:0:0:.:1932,0:30:28
chr5	150204634	rs17652561	G	A	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=2.51;TLOD=77.91	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:44,27:0.382:19:8:0.704:1495,887:20:24	0/0:29,2:0.067:1:1:0.500:1000,56:12:17
chr5	151126543	.	AACACACACAC	A	.	germline_risk	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.35;RPA=14,9;RU=AC;STR;TLOD=22.56	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:0,5:1.00:2:3:.:0,162:0:0	0/0:5,0:0.00:0:0:.:0,0:0:0
chr5	151554345	.	T	C	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=9.93;TLOD=4.06	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:48,2:0.043:0:2:0.00:1583,67:30:18	0/0:33,0:0.00:0:0:.:1118,0:20:13
chr5	151565531	rs35504977	C	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=13.32	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,4:0.667:1:3:0.750:62,131:1:1	0/0:4,0:0.00:0:0:.:129,0:2:2
chr5	151856478	rs7725327	A	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=25.91	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:9,8:0.471:5:3:0.375:289,272:3:6	0/0:6,0:0.00:0:0:.:196,0:1:5
chr5	154003042	rs75780714	A	G	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.10;TLOD=71.51	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:22,23:0.500:12:11:0.478:683,779:11:11	0/0:20,1:0.050:1:0:0.00:601,34:13:7
chr5	154376568	rs149128	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=13.31	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,4:0.800:1:3:0.250:35,126:1:0	0/0:4,0:0.00:0:0:.:140,0:1:3
chr5	154902991	rs10515726	T	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.01;TLOD=17.69	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:10,6:0.375:3:3:0.500:324,196:4:6	0/0:10,0:0.00:0:0:.:321,0:3:7
chr5	155397339	rs4958799	T	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=28.95	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:3,11:0.750:2:9:0.182:98,340:2:1	0/0:6,0:0.00:0:0:.:186,0:5:1
chr5	155492190	rs1644568	G	A	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=0.573;TLOD=49.55	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:22,17:0.459:6:11:0.353:777,557:12:10	0/0:27,2:0.071:1:1:0.500:941,69:9:18
chr5	155492650	.	T	G	.	PASS	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=2.71;TLOD=18.36	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:6,6:0.500:4:2:0.667:194,192:2:4	0/0:11,0:0.00:0:0:.:355,0:6:5
chr5	155493251	rs7716461	A	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=22.48	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:8,7:0.467:6:1:0.143:257,239:4:4	0/0:5,0:0.00:0:0:.:166,0:1:4
chr5	156951733	.	CTTG	C	.	str_contraction	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=54.26;RPA=4,3;RU=TTG;STR;TLOD=8.85	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:322,5:0.014:4:1:.:10859,176:199:123	0/0:199,1:5.435e-03:0:1:.:6748,34:126:73
chr5	157098909	.	AAGAG	A	.	germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.09;RPA=11,9;RU=AG;STR;TLOD=6.98	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:27,3:0.058:0:3:.:848,96:13:12	0/0:12,1:0.040:0:0:.:379,0:7:5
chr5	157307657	.	A	G	.	alt_allele_in_normal;germline_risk;t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=0.567;TLOD=5.64	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:0,2:1.00:1:0:.:0,34:0:0	0/0:4,1:0.100:1:0:.:120,35:1:3
chr5	157326249	rs11551374	C	T	.	alt_allele_in_normal	DB;ECNT=1;HCNT=6;MAX_ED=.;MIN_ED=.;NLOD=2.64;TLOD=289.74	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:98,96:0.508:58:38:0.396:2852,3134:51:47	0/0:99,7:0.073:4:3:0.429:2940,229:55:44
chr5	157333305	.	TTC	T	.	alt_allele_in_normal;str_contraction	ECNT=1;HCNT=12;MAX_ED=.;MIN_ED=.;NLOD=13.33;RPA=6,5;RU=TC;STR;TLOD=6.68	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:146,4:0.027:2:2:.:4839,133:87:59	0/0:92,4:0.043:2:2:.:3075,125:39:53
chr5	157338973	rs3734026	G	A	.	clustered_events;germline_risk	DB;ECNT=2;HCNT=2;MAX_ED=56;MIN_ED=56;NLOD=1.20;TLOD=12.40	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,4:0.500:0:4:0.00:114,129:1:3	0/0:4,0:0.00:0:0:.:111,0:1:3
chr5	157339029	rs3734027	A	G	.	clustered_events;germline_risk	DB;ECNT=2;HCNT=2;MAX_ED=56;MIN_ED=56;NLOD=1.81;TLOD=15.79	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:6,6:0.500:3:3:0.500:193,168:4:2	0/0:7,0:0.00:0:0:.:229,0:1:6
chr5	157471959	rs6879450	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=6.45	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,2:0.500:1:1:0.500:68,67:1:1	0/0:6,0:0.00:0:0:.:206,0:1:5
chr5	157488080	rs10475585	T	C	.	germline_risk;t_lod_fstar	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=5.28	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:6,2:0.250:1:1:0.500:192,66:4:2	0/0:5,0:0.00:0:0:.:168,0:2:3
chr5	157731318	rs2270821	G	C	.	germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=18.44	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:8,6:0.429:2:4:0.333:268,199:4:4	0/0:6,0:0.00:0:0:.:222,0:2:4
chr5	160234716	rs2421775	C	T	.	germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=2.71;TLOD=11.62	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:9,4:0.308:2:2:0.500:297,132:6:3	0/0:9,0:0.00:0:0:.:309,0:6:3
chr5	162142424	rs12520992	A	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=23.70	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:6,7:0.538:2:5:0.714:194,245:3:3	0/0:5,0:0.00:0:0:.:161,0:3:2
chr5	166382433	.	C	T	.	alt_allele_in_normal	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.75;TLOD=35.08	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:34,14:0.311:5:9:0.643:1066,454:21:13	0/0:28,1:0.034:1:0:0.00:877,35:10:18
chr5	168454010	.	AGAG	A	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=14.13;RPA=4,3;RU=GAG;STR;TLOD=4.94	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:79,2:0.025:0:2:.:2624,68:37:42	0/0:47,0:0.00:0:0:.:1521,0:24:23
chr5	168464663	rs62384143	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.36;TLOD=24.30	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:9,8:0.471:3:5:0.375:301,259:4:5	0/0:8,0:0.00:0:0:.:247,0:1:7
chr5	168817538	rs905799	A	G	.	germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=3.61;TLOD=26.09	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:9,8:0.471:1:7:0.875:280,274:6:3	0/0:12,0:0.00:0:0:.:382,0:4:8
chr5	169670501	.	T	TTTTTA	.	alt_allele_in_normal;germline_risk	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=0.633;RPA=2,3;RU=TTTTA;STR;TLOD=32.87	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:28,9:0.263:5:4:.:935,297:17:11	0/0:16,1:0.059:1:0:.:538,34:10:6
chr5	169674595	rs2244445	C	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=20.61	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,6:0.750:4:2:0.333:57,197:1:1	0/0:7,0:0.00:0:0:.:199,0:2:5
chr5	170080126	.	TTG	T	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=6.51;RPA=9,8;RU=TG;STR;TLOD=4.33	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:78,6:0.036:2:2:.:2603,136:45:33	0/0:32,1:0.016:1:0:.:1079,33:20:12
chr5	170234990	rs957998	G	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.01;TLOD=11.42	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:10,4:0.308:3:1:0.750:281,130:6:4	0/0:10,0:0.00:0:0:.:302,0:1:9
chr5	170353753	rs6894729	C	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=9.27	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,3:0.600:2:1:0.333:64,93:2:0	0/0:4,0:0.00:0:0:.:137,0:2:2
chr5	170895915	rs2287894	T	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=25.93	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,7:0.875:2:5:0.286:29,239:1:0	0/0:5,0:0.00:0:0:.:160,0:4:1
chr5	170909610	rs1833596	G	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=8.43	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:8,3:0.273:3:0:1.00:274,98:7:1	0/0:4,0:0.00:0:0:.:133,0:2:2
chr5	170968508	rs2879366	A	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=15.61	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:0,4:1.00:1:3:0.750:0,137:0:0	0/0:4,0:0.00:0:0:.:123,0:2:2
chr5	171400152	.	GTGA	G	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=4.50;RPA=5,4;RU=TGA;STR;TLOD=5.87	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:28,2:0.071:2:0:.:993,74:18:10	0/0:17,0:0.00:0:0:.:560,0:7:10
chr5	172082640	rs11741056	T	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.41;TLOD=14.56	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,5:0.714:3:2:0.600:62,141:1:1	0/0:8,0:0.00:0:0:.:253,0:5:3
chr5	172926724	rs74837478	A	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=16.65	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:7,5:0.417:4:1:0.200:228,178:4:3	0/0:5,0:0.00:0:0:.:165,0:3:2
chr5	172969612	.	C	T	.	alt_allele_in_normal	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.35;TLOD=8.54	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:54,5:0.088:4:1:0.200:1567,158:30:24	0/0:37,2:0.054:2:0:0.00:1052,65:16:21
chr5	173146764	rs29798	T	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=12.38	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:7,4:0.364:2:2:0.500:227,136:4:3	0/0:5,0:0.00:0:0:.:160,0:3:2
chr5	176040723	.	TCAAAGACC	T	.	clustered_events;homologous_mapping_event	ECNT=3;HCNT=2;MAX_ED=12;MIN_ED=9;NLOD=8.71;TLOD=15.79	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:40,5:0.116:4:1:.:0|1:176040723_TCAAAGACC_T:1310,169:16:24	0/0:31,0:0.00:0:0:.:0|1:176040723_TCAAAGACC_T:1025,0:18:13
chr5	176040732	.	TGC	T	.	clustered_events;homologous_mapping_event	ECNT=3;HCNT=2;MAX_ED=12;MIN_ED=9;NLOD=8.43;TLOD=15.96	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:37,5:0.125:4:1:.:0|1:176040723_TCAAAGACC_T:1208,170:16:21	0/0:33,0:0.00:0:0:.:0|1:176040723_TCAAAGACC_T:1075,0:19:14
chr5	176040735	.	TGG	T	.	clustered_events;homologous_mapping_event	ECNT=3;HCNT=2;MAX_ED=12;MIN_ED=9;NLOD=8.73;TLOD=15.96	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:33,5:0.125:4:1:.:0|1:176040723_TCAAAGACC_T:1084,157:12:21	0/0:32,0:0.00:0:0:.:0|1:176040723_TCAAAGACC_T:1045,0:20:12
chr5	176040889	.	G	A	.	germline_risk;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=5.31	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:10,2:0.167:1:1:0.500:337,67:5:5	0/0:7,0:0.00:0:0:.:233,0:2:5
chr5	176103163	.	G	C	.	alt_allele_in_normal	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=7.95;TLOD=50.34	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:52,22:0.297:9:13:0.409:1821,753:22:30	0/0:56,3:0.051:3:0:1.00:1940,105:29:27
chr5	176290624	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=2;HCNT=30;MAX_ED=67;MIN_ED=67;NLOD=22.96;TLOD=92.86	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:458,70:0.117:37:33:0.471:15773,2242:220:238	0/0:315,24:0.062:12:12:0.500:10994,784:160:155
chr5	176290691	.	T	TG	.	alt_allele_in_normal;clustered_events	ECNT=2;HCNT=36;MAX_ED=67;MIN_ED=67;NLOD=25.85;TLOD=14.82	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:463,13:0.028:8:5:.:15062,397:243:220	0/0:215,12:0.058:6:6:.:7067,365:109:106
chr5	176396606	.	TAG	T	.	germline_risk;str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.898;RPA=8,7;RU=AG;STR;TLOD=4.99	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,2:0.500:1:1:.:63,64:2:0	0/0:3,0:0.00:0:0:.:96,0:2:1
chr5	176506698	.	CGTGTGTGCGT	C	.	alt_allele_in_normal;t_lod_fstar	ECNT=1;HCNT=3;MAX_ED=.;MIN_ED=.;NLOD=11.97;TLOD=4.11	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:161,4:0.025:1:3:.:5464,110:93:68	0/0:75,3:0.040:2:1:.:2543,102:45:30
chr5	176565518	rs4523018	T	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=26.69	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,8:0.667:6:2:0.750:131,262:1:3	0/0:7,0:0.00:0:0:.:223,0:2:5
chr5	176584888	rs4868660	G	A	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.05;TLOD=39.54	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:26,14:0.359:10:4:0.714:858,462:11:15	0/0:28,1:0.036:1:0:1.00:928,29:18:10
chr5	176590343	.	G	GA	.	clustered_events;t_lod_fstar	ECNT=2;HCNT=4;MAX_ED=3;MIN_ED=3;NLOD=34.61;TLOD=4.13	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:204,2:9.852e-03:2:0:.:0|1:176590343_G_GA:6960,70:115:89	0/0:117,0:0.00:0:0:.:0|1:176590343_G_GA:4022,0:67:50
chr5	176590346	.	C	CA	.	clustered_events;t_lod_fstar	ECNT=2;HCNT=4;MAX_ED=3;MIN_ED=3;NLOD=35.21;TLOD=4.12	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:204,2:9.804e-03:2:0:.:0|1:176590343_G_GA:6979,70:117:87	0/0:113,0:0.00:0:0:.:0|1:176590343_G_GA:3917,0:66:47
chr5	176591618	.	ATGG	A	.	germline_risk;str_contraction	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;RPA=4,3;RU=TGG;STR;TLOD=12.05	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,3:0.600:2:1:.:65,100:1:1	0/0:5,0:0.00:0:0:.:159,0:3:2
chr5	176626335	.	GGTGTGTGTGT	G	.	PASS	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.62;RPA=14,9;RU=GT;STR;TLOD=10.37	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:87,11:0.058:2:0:.:102,72:3:0	0/0:40,1:0.016:1:0:.:36,37:1:0
chr5	177092286	rs393923	G	A	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.34;TLOD=51.03	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:14,19:0.533:14:5:0.737:435,623:5:9	0/0:21,1:0.050:0:1:0.00:623,32:8:13
chr5	177266015	rs75425485	C	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.82;TLOD=12.70	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:18,5:0.238:3:2:0.400:578,153:8:10	0/0:18,0:0.00:0:0:.:641,0:10:8
chr5	177283683	rs77309295	G	A	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.24;TLOD=26.72	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:7,8:0.533:4:4:0.500:248,274:4:3	0/0:16,1:0.059:1:0:1.00:552,34:10:6
chr5	177436226	.	T	A	.	alt_allele_in_normal;t_lod_fstar	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=15.36;TLOD=5.10	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:145,3:0.030:0:3:0.00:4192,61:63:82	0/0:74,2:0.015:2:0:1.00:2126,62:32:42
chr5	178209989	.	CT	C	.	germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;RPA=2,1;RU=T;STR;TLOD=8.60	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:6,3:0.333:2:1:.:200,102:1:5	0/0:4,0:0.00:0:0:.:133,0:3:1
chr5	178215176	rs2913748	C	T	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.74;TLOD=52.96	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:10,18:0.630:10:8:0.444:338,558:4:6	0/0:16,1:0.059:1:0:0.00:541,29:7:9
chr5	178224836	rs55812151	T	C	.	germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=13.09	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:8,4:0.333:2:2:0.500:272,145:4:4	0/0:5,0:0.00:0:0:.:164,0:1:4
chr5	178225230	rs2913869	A	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=26.08	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,9:0.692:4:5:0.556:127,253:0:4	0/0:5,0:0.00:0:0:.:148,0:3:2
chr5	178841178	rs7448857	A	G	.	germline_risk;t_lod_fstar	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=2.41;TLOD=5.18	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:7,2:0.222:1:1:0.500:227,63:3:4	0/0:8,0:0.00:0:0:.:248,0:3:5
chr5	178866949	.	TTTG	T	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=9.90;RPA=5,4;RU=TTG;STR;TLOD=5.23	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:57,2:0.034:1:1:.:1865,65:36:21	0/0:33,0:0.00:0:0:.:1117,0:15:18
chr5	179130106	.	T	C	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=2.04;TLOD=31.85	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:26,14:0.361:12:2:0.857:829,398:12:14	0/0:18,1:0.056:0:1:0.00:572,29:10:8
chr5	179180921	rs1862212	A	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=22.08	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:3,7:0.700:4:3:0.429:98,214:2:1	0/0:5,0:0.00:0:0:.:158,0:4:1
chr5	180236251	rs9605	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=15.91	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:0,4:1.00:1:3:0.250:0,140:0:0	0/0:4,0:0.00:0:0:.:142,0:1:3
chr5	180567815	.	CTG	C	.	alt_allele_in_normal;str_contraction	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.94;RPA=9,8;RU=TG;STR;TLOD=8.40	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:41,6:0.130:2:4:.:1427,205:26:15	0/0:19,1:0.053:1:0:.:664,36:10:9
chr5	180616612	.	C	A	.	germline_risk;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=4.01	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:16,2:0.111:2:0:0.00:552,58:9:7	0/0:7,0:0.00:0:0:.:245,0:3:4
chr5	181059841	rs10054109	C	T	.	PASS	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.71;TLOD=19.24	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:17,10:0.333:5:5:0.500:547,313:5:12	0/0:10,0:0.00:0:0:.:339,0:6:4
chr6	656298	.	C	T	.	t_lod_fstar	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=121.82;TLOD=6.15	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:244,5:0.017:3:2:0.400:8221,163:129:115	0/0:422,0:0.00:0:0:.:14521,0:204:218
chr6	1742754	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.72;TLOD=5.69	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:3,2:0.400:0:2:0.00:105,62:1:2	0/0:19,0:0.00:0:0:.:677,0:11:8
chr6	4133397	.	CAT	C	.	alt_allele_in_normal;str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.65;RPA=6,5;RU=AT;STR;TLOD=4.25	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:17,2:0.054:2:0:.:490,66:7:8	0/0:45,3:0.031:2:1:.:1525,105:19:26
chr6	7590286	.	AGCG	A	.	str_contraction	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=10.15;RPA=3,2;RU=GCG;STR;TLOD=6.51	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:15,2:0.143:0:2:.:455,67:8:7	0/0:40,0:0.00:0:0:.:1231,0:25:15
chr6	7899532	.	AGAGG	A	.	str_contraction	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=9.82;RPA=6,5;RU=GAGG;STR;TLOD=8.95	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:40,3:0.079:3:0:.:1148,97:32:8	0/0:49,1:0.021:1:0:.:1452,33:32:17
chr6	10398296	.	GGCA	G	.	clustered_events;str_contraction	ECNT=2;HCNT=16;MAX_ED=112;MIN_ED=112;NLOD=22.14;RPA=5,4;RU=GCA;STR;TLOD=6.72	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:29,3:0.094:1:2:.:746,86:17:12	0/0:74,0:0.00:0:0:.:1841,0:40:34
chr6	10398408	.	A	G	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=2;HCNT=16;MAX_ED=112;MIN_ED=112;NLOD=43.46;TLOD=4.40	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:165,25:0.114:19:6:0.240:4396,164:118:47	0/0:274,49:0.155:42:7:0.143:7224,139:180:94
chr6	11185196	.	A	G	.	t_lod_fstar	ECNT=1;HCNT=5;MAX_ED=.;MIN_ED=.;NLOD=39.68;TLOD=4.03	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:75,2:0.029:1:1:0.500:2405,70:41:34	0/0:136,0:0.00:0:0:.:4427,0:77:59
chr6	19613091	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=6;HCNT=19;MAX_ED=53;MIN_ED=4;NLOD=30.51;TLOD=10.31	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:125,4:0.032:2:2:0.500:0|1:19613091_C_T:4265,120:50:75	0/0:214,11:0.053:5:6:0.545:0|1:19613091_C_T:7252,352:100:114
chr6	19613095	.	A	C	.	alt_allele_in_normal;clustered_events	ECNT=6;HCNT=19;MAX_ED=53;MIN_ED=4;NLOD=32.02;TLOD=10.24	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:129,4:0.031:2:2:0.500:0|1:19613091_C_T:4173,131:52:77	0/0:219,14:0.060:7:7:0.500:0|1:19613091_C_T:7060,462:104:115
chr6	19613098	.	T	A	.	alt_allele_in_normal;clustered_events	ECNT=6;HCNT=19;MAX_ED=53;MIN_ED=4;NLOD=30.21;TLOD=10.20	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:137,4:0.030:2:2:0.500:0|1:19613091_C_T:4223,127:54:83	0/0:216,14:0.061:7:7:0.500:0|1:19613091_C_T:6707,455:104:112
chr6	19613126	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=6;HCNT=36;MAX_ED=53;MIN_ED=4;NLOD=20.96;TLOD=9.77	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:176,4:0.024:2:2:0.500:0|1:19613126_C_T:5913,134:85:91	0/0:254,23:0.084:13:10:0.435:0|1:19613126_C_T:8658,777:126:128
chr6	19613129	.	C	G	.	alt_allele_in_normal;clustered_events	ECNT=6;HCNT=36;MAX_ED=53;MIN_ED=4;NLOD=23.07;TLOD=9.73	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:175,4:0.023:2:2:0.500:0|1:19613126_C_T:5791,148:86:89	0/0:271,23:0.082:13:10:0.435:0|1:19613126_C_T:9113,841:135:136
chr6	19613144	.	T	C	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=6;HCNT=33;MAX_ED=53;MIN_ED=4;NLOD=38.34;TLOD=5.74	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:218,4:0.020:2:2:0.500:7139,138:105:113	0/0:312,22:0.071:12:10:0.545:10321,765:157:155
chr6	21594896	.	C	T	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=15.05;TLOD=4.63	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:41,2:0.057:1:1:0.500:1374,70:20:21	0/0:56,0:0.00:0:0:.:1907,0:30:26
chr6	24002118	.	C	T	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=25.23;TLOD=4.07	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:40,2:0.048:0:2:1.00:1198,66:18:22	0/0:89,0:0.00:0:0:.:2741,0:50:39
chr6	25923959	.	T	C	.	t_lod_fstar	ECNT=1;HCNT=8;MAX_ED=.;MIN_ED=.;NLOD=13.54;TLOD=5.59	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:22,2:0.083:0:2:0.00:722,72:14:8	0/0:45,0:0.00:0:0:.:1509,0:24:21
chr6	26156195	.	T	C	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.92;TLOD=5.07	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:15,2:0.118:1:1:0.500:503,68:7:8	0/0:23,0:0.00:0:0:.:751,0:13:10
chr6	26383862	.	CCCT	C	.	alt_allele_in_normal;str_contraction	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=38.91;RPA=5,4;RU=CCT;STR;TLOD=10.63	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:116,4:0.038:2:2:.:3900,141:59:57	0/0:178,3:0.013:1:2:.:6212,106:84:94
chr6	26422125	.	C	T	.	t_lod_fstar	ECNT=1;HCNT=8;MAX_ED=.;MIN_ED=.;NLOD=66.08;TLOD=5.43	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:110,5:0.045:2:3:0.600:3743,161:69:41	0/0:240,0:0.00:0:0:.:8190,0:116:124
chr6	26458677	.	C	CCTTCCTCCT	.	alt_allele_in_normal;germline_risk;triallelic_site	ECNT=1;HCNT=8;MAX_ED=.;MIN_ED=.;NLOD=1.23;TLOD=16.02	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:131,10:0.023:3:3:.:4417,213:69:60	0/0:256,15:0.024:11:3:.:8766,493:145:111
chr6	26545472	.	C	T	.	t_lod_fstar	ECNT=1;HCNT=6;MAX_ED=.;MIN_ED=.;NLOD=69.52;TLOD=4.50	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:161,3:0.021:2:1:0.333:5487,94:94:67	0/0:252,0:0.00:0:0:.:8705,0:109:143
chr6	32519398	.	G	A	.	alt_allele_in_normal	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=42.63;TLOD=7.69	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:249,9:0.026:5:4:0.556:7761,285:141:108	0/0:353,27:0.058:13:14:0.481:10890,869:182:171
chr6	32519532	.	T	C	.	alt_allele_in_normal;t_lod_fstar	ECNT=1;HCNT=8;MAX_ED=.;MIN_ED=.;NLOD=44.60;TLOD=4.38	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:156,4:0.027:4:0:1.00:5093,132:84:72	0/0:189,4:0.021:1:3:0.250:6112,126:99:90
chr6	32554718	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=2;HCNT=3;MAX_ED=6;MIN_ED=6;NLOD=61.81;TLOD=17.07	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:312,7:0.023:2:5:0.286:0|1:32554718_G_A:9577,233:175:137	0/0:495,21:0.043:11:10:0.524:0|1:32554718_G_A:15148,686:277:218
chr6	32554724	.	A	G	.	alt_allele_in_normal;clustered_events	ECNT=2;HCNT=3;MAX_ED=6;MIN_ED=6;NLOD=63.31;TLOD=17.10	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:317,7:0.023:2:5:0.714:0|1:32554718_G_A:10187,246:178:139	0/0:501,21:0.044:11:10:0.476:0|1:32554718_G_A:16359,736:282:219
chr6	32584360	.	G	A	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=4;HCNT=21;MAX_ED=35;MIN_ED=10;NLOD=3.66;TLOD=5.47	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:41,2:0.045:0:2:0.00:0|1:32584360_G_A:1371,68:15:26	0/0:56,3:0.069:1:2:0.333:0|1:32584360_G_A:1871,100:25:31
chr6	32584370	.	G	A	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=4;HCNT=21;MAX_ED=35;MIN_ED=10;NLOD=6.35;TLOD=5.67	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:36,2:0.057:0:2:0.00:0|1:32584360_G_A:1221,68:11:25	0/0:53,2:0.039:1:1:0.500:0|1:32584360_G_A:1782,68:24:29
chr6	32584394	.	C	G	.	clustered_events;multi_event_alt_allele_in_normal;t_lod_fstar	ECNT=4;HCNT=18;MAX_ED=35;MIN_ED=10;NLOD=6.04;TLOD=5.13	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:23,2:0.083:0:2:1.00:0|1:32584394_C_G:781,65:7:16	0/0:41,1:0.029:0:1:1.00:0|1:32584394_C_G:1418,33:18:23
chr6	32584395	.	C	G	.	clustered_events;multi_event_alt_allele_in_normal;t_lod_fstar	ECNT=4;HCNT=18;MAX_ED=35;MIN_ED=10;NLOD=6.04;TLOD=5.13	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:23,1:0.083:0:1:1.00:0|1:32584394_C_G:805,36:7:16	0/0:41,1:0.029:0:1:1.00:0|1:32584394_C_G:1440,34:18:23
chr6	33655890	.	ATG	A	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=14.67;RPA=6,5;RU=TG;STR;TLOD=4.45	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:25,2:0.077:2:0:.:808,66:14:11	0/0:51,0:0.00:0:0:.:1641,0:33:18
chr6	34538620	rs60385456	T	C	.	germline_risk;t_lod_fstar	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.71;TLOD=5.10	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,2:0.333:2:0:1.00:131,58:3:1	0/0:9,0:0.00:0:0:.:288,0:5:4
chr6	35838856	.	A	T	.	t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=20.46;TLOD=4.08	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:56,2:0.034:0:2:1.00:1784,69:30:26	0/0:68,0:0.00:0:0:.:2204,0:37:31
chr6	36497730	.	T	C	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=11.13;TLOD=4.19	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:24,2:0.077:1:1:0.500:747,63:13:11	0/0:37,0:0.00:0:0:.:1129,0:20:17
chr6	37474380	.	AT	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=8.42;RPA=3,2;RU=T;STR;TLOD=4.35	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:13,2:0.133:2:0:.:392,67:6:7	0/0:28,0:0.00:0:0:.:911,0:15:13
chr6	39078802	.	T	A	.	t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=9.89;TLOD=4.59	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:19,2:0.095:2:0:1.00:625,65:8:11	0/0:33,0:0.00:0:0:.:1053,0:18:15
chr6	41249377	.	A	G	.	alt_allele_in_normal;clustered_events	ECNT=2;HCNT=2;MAX_ED=4;MIN_ED=4;NLOD=17.05;TLOD=29.61	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:197,11:0.056:3:8:0.727:0|1:41249377_A_G:6648,386:93:104	0/0:154,7:0.045:3:4:0.571:0|1:41249377_A_G:5147,245:65:89
chr6	41249381	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=2;HCNT=2;MAX_ED=4;MIN_ED=4;NLOD=16.41;TLOD=29.68	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:211,11:0.057:3:8:0.273:0|1:41249377_A_G:7128,318:102:109	0/0:161,6:0.045:3:3:0.500:0|1:41249377_A_G:5478,197:67:94
chr6	41399599	.	T	C	.	germline_risk;t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=0.602;TLOD=4.50	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:0,1:1.00:0:1:0.00:0,35:0:0	0/0:2,0:0.00:0:0:.:68,0:1:1
chr6	41653430	.	TCTG	T	.	alt_allele_in_normal;str_contraction;t_lod_fstar	ECNT=1;HCNT=3;MAX_ED=.;MIN_ED=.;NLOD=26.11;RPA=5,4;RU=CTG;STR;TLOD=5.98	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:158,3:0.020:2:1:.:5139,95:88:70	0/0:133,4:0.023:3:1:.:4338,124:64:69
chr6	41740414	.	CTG	C	.	str_contraction	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=18.94;RPA=7,6;RU=TG;STR;TLOD=9.73	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:67,5:0.069:2:3:.:2221,173:22:45	0/0:64,0:0.00:0:0:.:2131,0:27:37
chr6	43185622	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=10.53;TLOD=4.30	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:35,2:0.056:1:1:0.500:1207,67:16:19	0/0:36,0:0.00:0:0:.:1239,0:17:19
chr6	44253310	.	C	T	.	alt_allele_in_normal;t_lod_fstar	ECNT=2;HCNT=2;MAX_ED=1;MIN_ED=1;NLOD=149.81;TLOD=4.77	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:669,4:6.885e-03:1:3:0.750:23371,135:351:318	0/0:609,3:5.747e-03:1:2:0.667:21369,91:329:280
chr6	44253311	.	T	G	.	alt_allele_in_normal	ECNT=2;HCNT=4;MAX_ED=1;MIN_ED=1;NLOD=140.73;TLOD=10.30	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:661,8:0.014:3:5:0.375:21647,215:346:315	0/0:603,5:0.012:2:3:0.400:19794,144:326:277
chr6	44392943	rs6942323	A	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=21.21	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,6:0.857:3:3:0.500:34,196:1:0	0/0:6,0:0.00:0:0:.:200,0:2:4
chr6	45422708	.	ACAG	A	.	alt_allele_in_normal;clustered_events;str_contraction;t_lod_fstar	ECNT=2;HCNT=4;MAX_ED=21;MIN_ED=21;NLOD=9.13;RPA=6,5;RU=CAG;STR;TLOD=5.19	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:57,2:0.034:1:1:.:1741,63:23:34	0/0:54,2:0.036:0:2:.:1658,62:20:34
chr6	45422729	.	ACAG	A	.	clustered_events;multi_event_alt_allele_in_normal;str_contraction;t_lod_fstar	ECNT=2;HCNT=4;MAX_ED=21;MIN_ED=21;NLOD=6.32;RPA=6,5;RU=CAG;STR;TLOD=5.68	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:33,2:0.057:0:2:.:1016,61:16:17	0/0:35,1:0.028:0:1:.:1060,32:13:22
chr6	45914319	.	C	T	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=25.88;TLOD=5.15	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:129,3:0.025:2:1:0.333:4383,98:64:65	0/0:97,0:0.00:0:0:.:3266,0:50:47
chr6	46697889	.	AAAT	A	.	germline_risk;str_contraction	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.10;RPA=6,5;RU=AAT;STR;TLOD=7.34	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,2:0.333:2:0:.:135,68:0:4	0/0:7,0:0.00:0:0:.:226,0:5:2
chr6	46858330	.	A	G	.	t_lod_fstar	ECNT=1;HCNT=6;MAX_ED=.;MIN_ED=.;NLOD=29.79;TLOD=4.45	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:87,3:0.023:3:0:0.00:2886,99:50:37	0/0:118,0:0.00:0:0:.:3916,0:53:65
chr6	51638818	.	C	A	.	alt_allele_in_normal;clustered_events	ECNT=4;HCNT=2;MAX_ED=7;MIN_ED=2;NLOD=4.30;TLOD=9.87	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:66,5:0.090:1:4:0.800:0|1:51638818_C_A:2052,93:28:38	0/0:46,5:0.105:1:4:0.800:0|1:51638818_C_A:1385,68:20:26
chr6	51638820	.	C	A	.	alt_allele_in_normal;clustered_events	ECNT=4;HCNT=2;MAX_ED=7;MIN_ED=2;NLOD=6.23;TLOD=9.78	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:73,5:0.061:1:4:0.800:0|1:51638818_C_A:2233,68:31:42	0/0:51,5:0.081:1:4:0.800:0|1:51638818_C_A:1520,58:21:30
chr6	51638822	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=4;HCNT=2;MAX_ED=7;MIN_ED=2;NLOD=8.34;TLOD=9.48	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:79,5:0.053:1:4:0.200:0|1:51638818_C_A:2547,40:36:43	0/0:57,5:0.072:1:4:0.200:0|1:51638818_C_A:1739,62:23:34
chr6	51638825	.	T	A	.	alt_allele_in_normal;clustered_events	ECNT=4;HCNT=2;MAX_ED=7;MIN_ED=2;NLOD=9.57;TLOD=9.41	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:96,5:0.052:1:4:0.200:0|1:51638818_C_A:2847,62:43:53	0/0:65,3:0.058:1:2:0.333:0|1:51638818_C_A:1868,39:28:37
chr6	56608019	.	A	G	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=11.13;TLOD=4.55	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:34,2:0.059:2:0:0.00:1128,69:19:15	0/0:39,0:0.00:0:0:.:1302,0:21:18
chr6	75148191	rs184766	C	T	.	germline_risk;t_lod_fstar	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.41;TLOD=5.90	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,2:0.333:1:1:0.500:137,66:3:1	0/0:8,0:0.00:0:0:.:274,0:4:4
chr6	80065343	.	C	T	.	t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=26.65;TLOD=4.05	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:85,3:0.035:1:2:0.667:2959,84:49:36	0/0:91,0:0.00:0:0:.:3098,0:47:44
chr6	83580368	.	TGA	T	.	alt_allele_in_normal;str_contraction	ECNT=1;HCNT=6;MAX_ED=.;MIN_ED=.;NLOD=3.46;RPA=10,9;RU=GA;STR;TLOD=8.13	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:19,6:0.240:4:2:.:605,183:8:11	0/0:19,1:0.050:0:1:.:604,34:10:9
chr6	85287743	.	CTCCACCTTCTCCACCT	C	.	alt_allele_in_normal;germline_risk	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.02;TLOD=7.19	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:158,4:0.021:3:1:.:5276,128:82:76	0/0:132,8:0.065:6:2:.:4411,269:74:58
chr6	86729719	rs529403	C	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.46;TLOD=10.76	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,4:0.500:3:1:0.250:138,114:1:3	0/0:5,0:0.00:0:0:.:147,0:0:5
chr6	87590200	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=16;MAX_ED=.;MIN_ED=.;NLOD=43.34;TLOD=4.03	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:170,1:0.013:0:1:0.00:5785,33:87:83	0/0:159,0:0.00:0:0:.:5457,0:84:75
chr6	87675573	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=9.58;TLOD=4.16	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:52,2:0.043:1:1:0.500:1816,68:30:22	0/0:38,0:0.00:0:0:.:1290,0:18:20
chr6	90586848	.	CGAG	C	.	alt_allele_in_normal;str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.00;RPA=5,4;RU=GAG;STR;TLOD=4.82	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:40,2:0.061:1:1:.:1200,58:14:26	0/0:29,1:0.040:1:0:.:885,34:18:11
chr6	108961613	.	G	T	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=17.71;TLOD=4.05	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:48,2:0.042:2:0:1.00:1684,67:25:23	0/0:60,0:0.00:0:0:.:2097,0:35:25
chr6	109442279	.	C	T	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=16.25;TLOD=4.79	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:72,1:0.030:1:0:0.00:2486,31:37:35	0/0:57,0:0.00:0:0:.:1967,0:34:23
chr6	112139047	.	G	T	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=11.74;TLOD=5.58	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:41,3:0.068:2:1:0.667:1449,89:18:23	0/0:39,0:0.00:0:0:.:1351,0:18:21
chr6	113970945	.	CCTG	C	.	germline_risk;str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.889;RPA=8,7;RU=CTG;STR;TLOD=5.52	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:9,3:0.200:3:0:.:303,106:7:2	0/0:3,0:0.00:0:0:.:108,0:1:2
chr6	116453332	.	C	T	.	alt_allele_in_normal	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=2.68;TLOD=11.65	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:54,4:0.068:2:2:0.500:1849,131:27:27	0/0:46,2:0.058:1:1:0.500:1578,63:24:22
chr6	116458412	.	G	T	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=8.12;TLOD=4.18	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:18,2:0.105:1:1:0.500:613,60:7:11	0/0:28,0:0.00:0:0:.:953,0:11:17
chr6	116622865	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=36.41;TLOD=4.89	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:142,3:0.022:1:2:0.333:4863,97:84:58	0/0:127,0:0.00:0:0:.:4321,0:69:58
chr6	116752731	.	T	TAG	.	germline_risk;t_lod_fstar;triallelic_site	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=0.802;TLOD=5.03	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,3:0.158:1:0:.:95,32:2:1	0/0:3,0:0.00:0:0:.:65,0:1:1
chr6	117566985	.	G	C	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=10.83;TLOD=4.21	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:50,2:0.040:1:1:0.500:1726,69:27:23	0/0:38,0:0.00:0:0:.:1323,0:19:19
chr6	117694169	.	C	G	.	alt_allele_in_normal	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=17.89;TLOD=22.14	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:97,12:0.117:5:7:0.583:3315,388:37:60	0/0:74,2:0.028:2:0:0.00:2522,32:33:41
chr6	117999385	.	T	C	.	alt_allele_in_normal;t_lod_fstar	ECNT=1;HCNT=3;MAX_ED=.;MIN_ED=.;NLOD=15.88;TLOD=5.56	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:63,3:0.046:0:3:0.00:2056,104:23:40	0/0:79,2:0.025:0:2:0.00:2582,69:32:47
chr6	118923856	.	A	G	.	t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=20.16;TLOD=5.01	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:91,3:0.035:2:1:0.333:2913,92:46:45	0/0:77,0:0.00:0:0:.:2531,0:42:35
chr6	127577315	.	A	G	.	t_lod_fstar	ECNT=1;HCNT=8;MAX_ED=.;MIN_ED=.;NLOD=27.98;TLOD=4.83	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:116,3:0.027:3:0:0.00:3833,94:63:53	0/0:110,1:9.615e-03:1:0:0.00:3603,28:53:57
chr6	129158053	.	C	T	.	alt_allele_in_normal	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=27.51;TLOD=6.59	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:110,4:0.037:2:2:0.500:3496,121:68:42	0/0:112,2:0.018:1:1:0.500:3445,65:63:49
chr6	129478921	.	T	C	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=14.14;TLOD=6.25	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:48,3:0.059:1:2:0.333:1450,99:20:28	0/0:47,0:0.00:0:0:.:1429,0:23:24
chr6	130869932	.	ACTG	A	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=29.00;RPA=5,4;RU=CTG;STR;TLOD=4.76	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:103,2:0.020:1:1:.:3123,63:63:40	0/0:102,0:0.00:0:0:.:3155,0:56:46
chr6	131649866	.	C	T	.	germline_risk;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=4.86	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:12,2:0.143:1:1:0.500:421,64:7:5	0/0:7,0:0.00:0:0:.:234,0:2:5
chr6	133889359	.	GTC	G	.	alt_allele_in_normal;str_contraction	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=8.79;RPA=9,8;RU=TC;STR;TLOD=6.45	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:79,7:0.030:3:4:.:1903,228:34:21	0/0:57,3:0.024:0:3:.:1038,98:18:12
chr6	137494072	.	CTGG	C	.	str_contraction	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=28.85;RPA=5,4;RU=TGG;STR;TLOD=7.52	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:118,3:0.027:2:1:.:3980,103:68:50	0/0:115,1:9.009e-03:0:1:.:3862,37:70:45
chr6	138846442	rs9399258	T	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=24.19	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,8:0.667:1:7:0.125:124,238:0:4	0/0:6,0:0.00:0:0:.:188,0:3:3
chr6	144200557	.	A	C	.	alt_allele_in_normal	ECNT=2;HCNT=2;MAX_ED=2;MIN_ED=2;NLOD=7.56;TLOD=6.38	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:77,3:0.040:2:1:0.333:0|1:144200557_A_C:2516,99:42:35	0/0:56,2:0.036:0:2:1.00:0|1:144200557_A_C:1837,72:33:23
chr6	144200559	.	T	A	.	alt_allele_in_normal	ECNT=2;HCNT=2;MAX_ED=2;MIN_ED=2;NLOD=7.86;TLOD=6.39	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:79,2:0.041:2:0:1.00:0|1:144200557_A_C:2587,57:42:37	0/0:55,2:0.036:0:2:0.00:0|1:144200557_A_C:1811,64:33:22
chr6	144700057	.	GTTA	G	.	alt_allele_in_normal;germline_risk;str_contraction	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.909;RPA=6,5;RU=TTA;STR;TLOD=9.31	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:26,3:0.103:2:1:.:875,98:18:8	0/0:18,1:0.056:0:1:.:604,34:11:7
chr6	148519418	.	G	A	.	germline_risk;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=4.89	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:9,2:0.182:1:1:0.500:307,62:3:6	0/0:4,0:0.00:0:0:.:149,0:2:2
chr6	151458285	.	GAC	G	.	alt_allele_in_normal;str_contraction	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=11.89;RPA=8,7;RU=AC;STR;TLOD=13.55	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:83,9:0.055:3:5:.:2841,282:45:38	0/0:80,5:0.027:3:0:.:2824,109:47:33
chr6	152373114	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=10;MAX_ED=.;MIN_ED=.;NLOD=46.35;TLOD=4.35	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:195,4:0.022:2:2:0.500:6675,100:100:95	0/0:170,0:0.00:0:0:.:5817,0:95:75
chr6	159266003	.	C	G	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.72;TLOD=5.60	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:13,2:0.133:1:1:0.500:458,72:7:6	0/0:19,0:0.00:0:0:.:674,0:12:7
chr6	159711645	.	T	A	.	alt_allele_in_normal	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=46.66;TLOD=8.26	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:267,9:0.036:3:6:0.333:8493,270:89:178	0/0:235,7:0.032:3:4:0.429:7473,216:103:132
chr6	159711817	.	T	C	.	alt_allele_in_normal	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=38.41;TLOD=6.93	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:246,4:0.017:0:4:0.00:7172,146:87:159	0/0:331,13:0.040:4:9:0.308:10134,441:119:212
chr6	159712320	.	C	T	.	alt_allele_in_normal;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=50.49;TLOD=4.36	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:215,5:0.025:1:4:0.800:7399,161:69:146	0/0:238,8:0.036:1:7:0.875:7897,234:100:138
chr6	160731707	.	T	A	.	PASS	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=20.72;TLOD=13.49	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:56,6:0.103:4:2:0.667:1843,190:36:20	0/0:71,0:0.00:0:0:.:2326,0:35:36
chr6	160773956	.	C	A	.	alt_allele_in_normal;t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=15.86;TLOD=4.55	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:133,4:0.034:4:0:0.00:4501,121:66:67	0/0:133,14:0.091:6:8:0.571:4564,447:70:63
chr6	160898707	.	T	C	.	alt_allele_in_normal;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.21;TLOD=4.98	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:28,2:0.069:1:1:0.500:820,72:15:13	0/0:23,1:0.042:0:1:0.00:706,35:14:9
chr6	165448951	.	A	G	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=12.94;TLOD=4.25	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:71,2:0.033:1:1:0.500:2247,71:31:40	0/0:50,0:0.00:0:0:.:1573,0:27:23
chr6	167172185	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.81;TLOD=4.59	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:19,2:0.095:0:2:0.00:645,65:3:16	0/0:16,0:0.00:0:0:.:528,0:6:10
chr6	167208846	.	G	A	.	alt_allele_in_normal	ECNT=1;HCNT=16;MAX_ED=.;MIN_ED=.;NLOD=15.62;TLOD=20.83	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:240,14:0.060:7:7:0.500:7617,460:96:144	0/0:193,24:0.109:10:14:0.417:6356,775:85:108
chr6	167308533	rs6933816	A	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=9.42	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:3,3:0.500:2:1:0.333:93,98:2:1	0/0:4,0:0.00:0:0:.:129,0:1:3
chr6	167315412	.	T	C	.	alt_allele_in_normal	ECNT=2;HCNT=12;MAX_ED=1;MIN_ED=1;NLOD=65.85;TLOD=10.80	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:339,7:0.022:3:4:0.429:0|1:167315412_T_C:10646,208:163:176	0/0:328,10:0.032:4:6:0.400:0|1:167315412_T_C:10423,259:147:181
chr6	167315413	.	C	G	.	alt_allele_in_normal	ECNT=2;HCNT=12;MAX_ED=1;MIN_ED=1;NLOD=66.15;TLOD=10.81	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:339,3:0.022:1:2:0.667:0|1:167315412_T_C:11826,89:162:177	0/0:327,10:0.032:4:6:0.600:0|1:167315412_T_C:11486,297:145:182
chr6	167376000	.	C	T	.	alt_allele_in_normal;t_lod_fstar	ECNT=1;HCNT=8;MAX_ED=.;MIN_ED=.;NLOD=7.25;TLOD=4.90	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:40,3:0.075:2:1:0.333:1301,87:20:20	0/0:33,2:0.054:2:0:0.00:1038,60:17:16
chr7	851341	rs7792674	T	C	.	germline_risk;t_lod_fstar	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=6.20	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,2:0.333:0:2:0.00:126,69:3:1	0/0:4,0:0.00:0:0:.:122,0:3:1
chr7	1438979	.	T	G	.	t_lod_fstar	ECNT=1;HCNT=8;MAX_ED=.;MIN_ED=.;NLOD=5.41;TLOD=4.14	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:42,14:0.182:9:5:0.643:1339,141:29:13	0/0:38,5:0.122:3:2:0.600:1210,10:25:13
chr7	2513247	.	AGATG	A	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.94;RPA=7,6;RU=GATG;STR;TLOD=5.73	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:31,2:0.042:2:0:.:637,69:12:7	0/0:35,1:0.020:1:0:.:646,32:11:8
chr7	2945727	.	GACACAC	G	.	alt_allele_in_normal;germline_risk	ECNT=1;HCNT=5;MAX_ED=.;MIN_ED=.;NLOD=0.640;RPA=13,10;RU=AC;STR;TLOD=8.37	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:122,20:0.081:1:2:.:1672,105:27:23	0/0:100,18:0.092:0:4:.:1029,136:10:21
chr7	5965822	.	AAAAT	A	.	germline_risk;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.60;TLOD=4.68	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:0,2:1.00:0:2:.:0,66:0:0	0/0:8,0:0.00:0:0:.:259,0:2:6
chr7	12507427	.	T	C	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.31;TLOD=4.84	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:15,2:0.125:2:0:1.00:492,65:5:10	0/0:12,0:0.00:0:0:.:395,0:7:5
chr7	16278042	rs3801431	T	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=7.22	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,2:0.667:0:2:0.00:34,71:1:0	0/0:4,0:0.00:0:0:.:132,0:1:3
chr7	16584729	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=10.53;TLOD=4.13	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:39,2:0.051:0:2:0.00:1186,66:23:16	0/0:36,0:0.00:0:0:.:1126,0:21:15
chr7	21711775	.	A	G	.	t_lod_fstar	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=17.45;TLOD=4.01	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:70,2:0.029:1:1:0.500:2218,70:38:32	0/0:66,0:0.00:0:0:.:2142,0:38:28
chr7	23717641	rs2058995	T	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=24.93	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,7:0.636:6:1:0.857:129,248:3:1	0/0:6,0:0.00:0:0:.:184,0:5:1
chr7	26725357	.	AAC	A	.	alt_allele_in_normal;str_contraction;t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=2.49;RPA=7,6;RU=AC;STR;TLOD=4.09	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:21,2:0.087:0:2:.:712,69:8:13	0/0:19,1:0.050:0:1:.:631,34:8:11
chr7	34827728	rs2109124	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=13.99	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,5:0.833:3:2:0.600:34,138:0:1	0/0:4,0:0.00:0:0:.:138,0:3:1
chr7	35248846	.	CAGAG	C	.	t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=12.90;RPA=8,6;RU=AG;STR;TLOD=5.37	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:42,2:0.025:1:1:.:1444,68:22:19	0/0:46,0:0.00:0:0:.:1427,0:20:20
chr7	38242529	.	GGT	G	.	alt_allele_in_normal;str_contraction;t_lod_fstar	ECNT=1;HCNT=6;MAX_ED=.;MIN_ED=.;NLOD=13.34;RPA=10,9;RU=GT;STR;TLOD=5.70	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:79,8:0.045:4:4:.:2100,273:33:32	0/0:78,5:0.028:0:5:.:2224,175:45:22
chr7	38245284	.	GGT	G	.	alt_allele_in_normal;str_contraction	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=16.18;RPA=8,7;RU=GT;STR;TLOD=7.73	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:91,5:0.034:3:2:.:2775,174:51:33	0/0:79,2:0.014:0:2:.:2422,69:45:29
chr7	38462900	rs7776921	G	A	.	t_lod_fstar	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=9.32;TLOD=4.06	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:28,2:0.067:0:2:0.00:769,63:16:12	0/0:31,0:0.00:0:0:.:878,0:18:13
chr7	38772524	.	C	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.32;TLOD=4.20	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:29,2:0.069:2:0:0.00:998,64:21:8	0/0:24,0:0.00:0:0:.:826,0:16:8
chr7	39464110	.	G	T	.	PASS	ECNT=1;HCNT=3;MAX_ED=.;MIN_ED=.;NLOD=44.20;TLOD=6.35	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:163,4:0.024:3:1:0.750:5452,126:76:87	0/0:147,0:0.00:0:0:.:5016,0:65:82
chr7	39570607	.	A	G	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=18.96;TLOD=4.06	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:79,3:0.027:1:2:0.667:2492,107:38:41	0/0:66,0:0.00:0:0:.:2093,0:38:28
chr7	39834724	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=2;HCNT=14;MAX_ED=8;MIN_ED=8;NLOD=33.44;TLOD=9.59	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:220,4:0.021:2:2:0.500:0|1:39834724_C_T:7366,129:103:117	0/0:192,12:0.057:5:7:0.583:0|1:39834724_C_T:6597,395:75:117
chr7	39834732	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=2;HCNT=14;MAX_ED=8;MIN_ED=8;NLOD=33.49;TLOD=9.69	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:201,4:0.022:2:2:0.500:0|1:39834724_C_T:6590,130:90:111	0/0:195,12:0.057:5:7:0.417:0|1:39834724_C_T:6357,405:74:121
chr7	39997633	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=3;MAX_ED=.;MIN_ED=.;NLOD=30.40;TLOD=4.58	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:132,3:0.024:1:2:0.333:4503,93:72:60	0/0:112,0:0.00:0:0:.:3858,0:52:60
chr7	41690142	.	TTTC	T	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=9.85;RPA=4,3;RU=TTC;STR;TLOD=5.34	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:53,2:0.039:2:0:.:1742,68:29:24	0/0:50,1:0.021:0:1:.:1674,34:26:24
chr7	42802615	rs7800624	C	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=6.52	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,2:0.667:1:1:0.500:28,66:0:1	0/0:4,0:0.00:0:0:.:115,0:1:3
chr7	44007335	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=8;MAX_ED=.;MIN_ED=.;NLOD=78.46;TLOD=5.52	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:318,6:0.017:3:3:0.500:10914,186:170:148	0/0:277,0:0.00:0:0:.:9517,0:128:149
chr7	44065566	.	A	G	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=13.24;TLOD=4.27	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:52,2:0.038:2:0:0.00:1567,70:27:25	0/0:46,0:0.00:0:0:.:1391,0:26:20
chr7	44757465	.	TGTGGCTGCTGCGGCAGCCACTGCCACCGCCACAGCCACAGCCACC	T	.	t_lod_fstar	ECNT=1;HCNT=6;MAX_ED=.;MIN_ED=.;NLOD=14.80;TLOD=5.17	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:66,3:0.029:2:1:.:1573,94:30:36	0/0:53,0:0.00:0:0:.:1290,0:26:27
chr7	44969820	.	C	T	.	t_lod_fstar	ECNT=1;HCNT=8;MAX_ED=.;MIN_ED=.;NLOD=61.16;TLOD=4.14	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:261,3:0.012:2:1:0.333:8740,97:139:122	0/0:226,0:0.00:0:0:.:7530,0:119:107
chr7	47413908	.	ACAG	A	.	alt_allele_in_normal;str_contraction	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=20.64;RPA=7,6;RU=CAG;STR;TLOD=8.31	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:141,4:0.030:2:2:.:4691,140:70:71	0/0:99,2:0.021:0:2:.:3283,66:48:51
chr7	57002228	.	G	C	.	germline_risk	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=6.63	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:5,3:0.375:1:2:0.333:169,83:4:1	0/0:5,0:0.00:0:0:.:159,0:3:2
chr7	57061259	.	T	C	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.71;TLOD=6.20	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:7,2:0.250:0:2:0.00:230,72:4:3	0/0:9,0:0.00:0:0:.:300,0:3:6
chr7	58088159	.	T	A	.	alt_allele_in_normal;germline_risk;t_lod_fstar	ECNT=1;HCNT=10;MAX_ED=.;MIN_ED=.;NLOD=0.735;TLOD=4.22	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:10,2:0.083:1:1:0.500:305,58:5:5	0/0:14,1:0.034:1:0:1.00:397,30:12:2
chr7	58088269	.	C	A	.	clustered_events;t_lod_fstar	ECNT=2;HCNT=6;MAX_ED=6;MIN_ED=6;NLOD=4.82;TLOD=6.18	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:19,2:0.100:0:2:1.00:0|1:58088269_C_A:548,67:11:8	0/0:16,0:0.00:0:0:.:0|1:58088269_C_A:476,0:12:4
chr7	58088275	.	G	A	.	clustered_events;t_lod_fstar	ECNT=2;HCNT=6;MAX_ED=6;MIN_ED=6;NLOD=4.82;TLOD=6.13	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:20,2:0.095:0:2:0.00:0|1:58088269_C_A:679,64:11:9	0/0:15,0:0.00:0:0:.:0|1:58088269_C_A:489,0:12:3
chr7	60957272	.	G	C	.	t_lod_fstar	ECNT=1;HCNT=8;MAX_ED=.;MIN_ED=.;NLOD=3.31;TLOD=4.13	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:19,2:0.100:2:0:1.00:644,61:10:9	0/0:11,0:0.00:0:0:.:357,0:5:6
chr7	65388828	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=14;HCNT=13;MAX_ED=100;MIN_ED=1;NLOD=18.14;TLOD=6.31	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:146,4:0.021:2:2:0.500:0|1:65388828_C_T:5053,132:83:63	0/0:135,5:0.037:4:1:0.200:0|1:65388828_C_T:4697,169:77:58
chr7	65388829	.	C	T	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=14;HCNT=13;MAX_ED=100;MIN_ED=1;NLOD=18.74;TLOD=6.30	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:149,3:0.021:1:2:0.667:0|1:65388828_C_T:5072,103:85:64	0/0:137,5:0.036:4:1:0.200:0|1:65388828_C_T:4658,172:77:60
chr7	65388831	.	G	A	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=14;HCNT=13;MAX_ED=100;MIN_ED=1;NLOD=19.34;TLOD=4.44	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:153,3:0.014:1:2:0.333:0|1:65388828_C_T:5420,98:86:67	0/0:140,5:0.036:4:1:0.800:0|1:65388828_C_T:5035,165:77:63
chr7	65388840	.	G	T	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=14;HCNT=13;MAX_ED=100;MIN_ED=1;NLOD=22.94;TLOD=4.38	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:163,2:0.013:1:1:0.500:0|1:65388828_C_T:5617,64:88:75	0/0:147,4:0.029:3:1:0.750:0|1:65388828_C_T:5111,129:76:71
chr7	65388843	.	G	A	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=14;HCNT=13;MAX_ED=100;MIN_ED=1;NLOD=30.43;TLOD=4.38	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:169,2:0.013:1:1:0.500:0|1:65388828_C_T:5917,66:88:81	0/0:149,2:0.015:2:0:1.00:0|1:65388828_C_T:5257,67:78:71
chr7	65388847	.	C	A	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=14;HCNT=13;MAX_ED=100;MIN_ED=1;NLOD=29.83;TLOD=4.39	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:170,2:0.013:1:1:0.500:0|1:65388828_C_T:5897,66:89:81	0/0:143,2:0.016:2:0:0.00:0|1:65388828_C_T:4986,69:74:69
chr7	65388879	.	T	C	.	clustered_events;multi_event_alt_allele_in_normal;t_lod_fstar	ECNT=14;HCNT=14;MAX_ED=100;MIN_ED=1;NLOD=25.90;TLOD=4.53	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:141,2:0.016:2:0:1.00:0|1:65388879_T_C:4559,71:66:75	0/0:108,1:9.901e-03:1:0:1.00:0|1:65388879_T_C:3526,37:58:50
chr7	65388880	.	G	A	.	clustered_events;multi_event_alt_allele_in_normal;t_lod_fstar	ECNT=14;HCNT=14;MAX_ED=100;MIN_ED=1;NLOD=26.20;TLOD=4.51	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:137,2:0.015:2:0:1.00:0|1:65388879_T_C:4837,67:66:71	0/0:106,1:9.804e-03:1:0:1.00:0|1:65388879_T_C:3765,35:56:50
chr7	65388891	.	C	T	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=14;HCNT=15;MAX_ED=100;MIN_ED=1;NLOD=14.80;TLOD=4.58	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:124,2:0.017:2:0:0.00:0|1:65388891_C_T:4398,67:61:63	0/0:94,2:0.032:2:0:0.00:0|1:65388891_C_T:3373,67:48:46
chr7	65388892	.	A	G	.	alt_allele_in_normal;clustered_events	ECNT=14;HCNT=15;MAX_ED=100;MIN_ED=1;NLOD=15.40;TLOD=7.36	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:125,2:0.024:2:0:0.00:0|1:65388891_C_T:4142,72:61:64	0/0:93,3:0.031:2:1:0.333:0|1:65388891_C_T:3115,109:49:44
chr7	65388895	.	A	T	.	alt_allele_in_normal;clustered_events	ECNT=14;HCNT=15;MAX_ED=100;MIN_ED=1;NLOD=11.20;TLOD=7.36	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:122,3:0.024:3:0:0.00:0|1:65388891_C_T:3747,98:58:64	0/0:90,3:0.041:2:1:0.333:0|1:65388891_C_T:2749,101:46:44
chr7	65388905	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=14;HCNT=15;MAX_ED=100;MIN_ED=1;NLOD=6.70;TLOD=7.40	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:119,3:0.025:3:0:1.00:0|1:65388891_C_T:4009,103:56:63	0/0:88,5:0.052:3:2:0.600:0|1:65388891_C_T:2994,169:37:51
chr7	65388927	.	A	G	.	alt_allele_in_normal;clustered_events	ECNT=14;HCNT=15;MAX_ED=100;MIN_ED=1;NLOD=2.79;TLOD=10.74	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:93,3:0.041:2:1:0.333:0|1:65388891_C_T:3052,103:47:46	0/0:71,5:0.060:3:2:0.400:0|1:65388891_C_T:2392,173:29:42
chr7	65388928	.	A	G	.	alt_allele_in_normal;clustered_events;germline_risk	ECNT=14;HCNT=15;MAX_ED=100;MIN_ED=1;NLOD=1.88;TLOD=10.73	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:93,3:0.040:2:1:0.333:0|1:65388891_C_T:2890,105:46:47	0/0:71,5:0.062:3:2:0.400:0|1:65388891_C_T:2217,175:31:40
chr7	65773587	.	A	G	.	clustered_events;germline_risk;t_lod_fstar	ECNT=2;HCNT=4;MAX_ED=13;MIN_ED=13;NLOD=1.20;TLOD=4.60	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:6,2:0.250:1:1:0.500:192,56:3:3	0/0:4,0:0.00:0:0:.:128,0:2:2
chr7	65773600	.	G	T	.	clustered_events;germline_risk;t_lod_fstar	ECNT=2;HCNT=4;MAX_ED=13;MIN_ED=13;NLOD=1.50;TLOD=5.19	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:9,2:0.182:1:1:0.500:316,65:5:4	0/0:5,0:0.00:0:0:.:170,0:2:3
chr7	66087243	.	CGTGTGTGT	C	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.84;RPA=20,16;RU=GT;STR;TLOD=6.01	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:24,8:0.148:2:0:.:0,70:0:0	0/0:27,8:0.107:0:0:.:411,0:7:5
chr7	67183104	.	C	G	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.02;TLOD=6.18	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:13,3:0.188:1:2:0.667:445,104:8:5	0/0:20,0:0.00:0:0:.:691,0:14:6
chr7	72810415	.	CGT	C	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=19.39;RPA=7,6;RU=GT;STR;TLOD=4.28	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:64,3:0.045:2:1:.:2131,100:45:19	0/0:76,1:0.013:0:1:.:2538,30:49:27
chr7	72938640	.	C	A	.	alt_allele_in_normal	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=19.83;TLOD=10.58	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:283,9:0.036:2:7:0.778:9716,284:156:127	0/0:203,16:0.077:10:6:0.375:7048,468:91:112
chr7	72941888	.	G	A	.	alt_allele_in_normal	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.94;TLOD=10.94	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:26,5:0.161:1:4:0.200:874,150:17:9	0/0:120,2:0.018:1:1:0.500:4032,59:53:67
chr7	73244146	.	T	C	.	alt_allele_in_normal	ECNT=1;HCNT=6;MAX_ED=.;MIN_ED=.;NLOD=15.14;TLOD=6.95	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:190,6:0.035:3:3:0.500:6220,211:98:92	0/0:170,10:0.059:4:6:0.400:5629,308:86:84
chr7	73864931	.	T	G	.	alt_allele_in_normal	ECNT=1;HCNT=67;MAX_ED=.;MIN_ED=.;NLOD=50.32;TLOD=11.42	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:328,58:0.146:26:32:0.448:9449,496:174:154	0/0:306,42:0.123:14:28:0.333:8564,304:171:135
chr7	75422007	.	C	G	.	alt_allele_in_normal;clustered_events;germline_risk	ECNT=2;HCNT=4;MAX_ED=78;MIN_ED=78;NLOD=1.73;TLOD=13.34	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:116,2:0.059:1:1:0.500:3954,70:62:54	0/0:101,9:0.090:4:5:0.556:3402,315:51:50
chr7	75422085	.	T	C	.	alt_allele_in_normal;clustered_events	ECNT=2;HCNT=4;MAX_ED=78;MIN_ED=78;NLOD=7.59;TLOD=8.46	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:91,6:0.065:2:4:0.333:2712,198:48:43	0/0:127,17:0.118:8:9:0.471:3660,578:67:60
chr7	76483031	.	C	G	.	alt_allele_in_normal	ECNT=1;HCNT=27;MAX_ED=.;MIN_ED=.;NLOD=15.01;TLOD=17.58	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:365,16:0.039:8:8:0.500:12511,500:152:213	0/0:340,32:0.092:9:23:0.719:11794,990:144:196
chr7	77002238	.	C	T	.	PASS	ECNT=1;HCNT=3;MAX_ED=.;MIN_ED=.;NLOD=10.23;TLOD=11.15	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:42,5:0.104:0:5:1.00:1423,159:20:22	0/0:36,0:0.00:0:0:.:1207,0:20:16
chr7	77329285	.	G	T	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=8.13;TLOD=4.26	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:29,2:0.067:2:0:1.00:1041,65:20:9	0/0:27,0:0.00:0:0:.:962,0:13:14
chr7	77696902	.	CCCG	C	.	alt_allele_in_normal;str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.56;RPA=5,4;RU=CCG;STR;TLOD=5.91	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:30,3:0.074:2:1:.:961,99:16:14	0/0:31,1:0.037:0:1:.:1021,34:13:18
chr7	83155117	.	T	C	.	alt_allele_in_normal;clustered_events	ECNT=2;HCNT=12;MAX_ED=8;MIN_ED=8;NLOD=57.14;TLOD=6.68	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:353,8:7.937e-03:0:8:.:0|1:83155117_T_C:10884,140:249:102	0/0:358,15:0.017:2:13:.:0|1:83155117_T_C:10714,258:237:114
chr7	83155125	.	A	G	.	alt_allele_in_normal;clustered_events	ECNT=2;HCNT=12;MAX_ED=8;MIN_ED=8;NLOD=50.34;TLOD=7.16	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:322,5:0.018:0:5:1.00:0|1:83155117_T_C:10219,91:224:98	0/0:331,14:0.037:2:12:0.857:0|1:83155117_T_C:10281,217:219:112
chr7	87439598	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=8.72;TLOD=4.12	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:42,2:0.045:2:0:1.00:1176,67:23:19	0/0:29,0:0.00:0:0:.:807,0:13:16
chr7	87904522	rs77939101	T	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=25.17	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,7:0.778:5:2:0.714:68,240:1:1	0/0:4,0:0.00:0:0:.:134,0:3:1
chr7	90119574	rs11552168	G	A	.	germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=6.82	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,2:0.667:1:1:0.500:34,67:0:1	0/0:4,0:0.00:0:0:.:138,0:1:3
chr7	90304643	.	GTAGA	G	.	germline_risk;str_contraction	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.76;RPA=11,10;RU=TAGA;STR;TLOD=6.92	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:12,3:0.200:3:0:.:387,104:8:4	0/0:6,0:0.00:0:0:.:199,0:1:5
chr7	91079383	.	A	T	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.91;TLOD=4.40	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:13,2:0.133:2:0:0.00:406,60:7:6	0/0:13,0:0.00:0:0:.:410,0:5:8
chr7	93294638	.	T	G	.	alt_allele_in_normal;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=12.27;TLOD=4.74	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:68,14:0.103:8:6:0.571:2283,184:36:32	0/0:87,9:0.101:5:4:0.556:2900,111:47:40
chr7	96028144	.	ATC	A	.	alt_allele_in_normal;str_contraction	ECNT=1;HCNT=3;MAX_ED=.;MIN_ED=.;NLOD=30.66;RPA=8,7;RU=TC;STR;TLOD=9.54	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:137,7:0.055:5:2:.:4417,220:75:62	0/0:167,4:0.027:3:1:.:5357,130:88:79
chr7	97906243	.	CCCA	C	.	str_contraction	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=22.18;RPA=8,7;RU=CCA;STR;TLOD=9.43	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:80,4:0.048:2:2:.:2493,133:37:43	0/0:89,1:0.011:1:0:.:2976,36:34:55
chr7	99434981	.	TCTC	T	.	str_contraction	ECNT=1;HCNT=6;MAX_ED=.;MIN_ED=.;NLOD=22.78;RPA=5,4;RU=CTC;STR;TLOD=6.87	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:104,3:0.033:0:3:.:3296,94:57:47	0/0:97,1:0.011:1:0:.:3053,34:50:47
chr7	100124796	.	CAGG	C	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=32.12;RPA=5,4;RU=AGG;STR;TLOD=4.56	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:125,3:0.016:3:0:.:4267,108:65:60	0/0:110,0:0.00:0:0:.:3720,0:61:49
chr7	100213581	rs1623264	G	C	.	germline_risk;t_lod_fstar	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=5.98	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:7,2:0.222:2:0:1.00:255,71:5:2	0/0:5,0:0.00:0:0:.:173,0:4:1
chr7	100488900	.	CCTG	C	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=15.29;RPA=4,3;RU=CTG;STR;TLOD=5.05	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:82,2:0.028:0:2:.:2807,70:35:47	0/0:58,0:0.00:0:0:.:1968,0:25:33
chr7	100723196	.	T	C	.	alt_allele_in_normal;germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.953;TLOD=8.53	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:25,9:0.265:3:6:0.333:754,203:13:12	0/0:14,3:0.176:1:2:0.333:422,41:4:10
chr7	100953043	.	C	T	.	alt_allele_in_normal	ECNT=1;HCNT=6;MAX_ED=.;MIN_ED=.;NLOD=11.48;TLOD=11.20	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:75,4:0.053:1:3:0.750:2577,130:37:38	0/0:83,3:0.036:0:3:1.00:2905,103:36:47
chr7	100958517	.	T	G	.	alt_allele_in_normal	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=36.76;TLOD=13.20	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:130,5:0.037:2:3:0.400:4238,149:50:80	0/0:152,2:0.013:1:1:0.500:4915,67:64:88
chr7	100958904	.	C	G	.	alt_allele_in_normal;t_lod_fstar	ECNT=1;HCNT=16;MAX_ED=.;MIN_ED=.;NLOD=66.35;TLOD=5.97	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:376,3:8.333e-03:2:1:0.333:13139,101:175:201	0/0:367,9:0.025:4:5:0.556:12917,315:144:223
chr7	100959644	.	C	G	.	PASS	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=22.22;TLOD=22.86	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:552,193:0.146:0:2:1.00:16029,71:259:268	0/0:454,165:0.164:0:0:.:13051,0:210:222
chr7	101050653	.	A	T	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=7.22;TLOD=4.34	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:29,2:0.065:1:1:0.500:956,66:10:19	0/0:25,0:0.00:0:0:.:837,0:19:6
chr7	102605700	.	G	A	.	germline_risk;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.10;TLOD=4.95	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,2:0.500:1:1:0.500:56,64:2:0	0/0:9,0:0.00:0:0:.:243,0:4:5
chr7	103551238	.	G	C	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=17.16;TLOD=4.59	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:55,3:0.039:3:0:1.00:1919,109:32:23	0/0:62,0:0.00:0:0:.:2194,0:32:30
chr7	105583123	.	C	T	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=12.59;TLOD=4.46	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:28,2:0.067:0:2:1.00:987,67:13:15	0/0:42,0:0.00:0:0:.:1431,0:20:22
chr7	108184623	.	GAC	G	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=6.91;RPA=6,5;RU=AC;STR;TLOD=4.39	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:26,3:0.074:1:2:.:879,101:16:10	0/0:24,0:0.00:0:0:.:810,0:14:10
chr7	111994334	rs847542	T	C	.	germline_risk;t_lod_fstar	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=4.90	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,2:0.333:2:0:1.00:129,56:2:2	0/0:4,0:0.00:0:0:.:130,0:1:3
chr7	114629915	.	GCAA	G	.	alt_allele_in_normal;clustered_events;str_contraction;t_lod_fstar	ECNT=2;HCNT=3;MAX_ED=30;MIN_ED=30;NLOD=5.85;RPA=5,4;RU=CAA;STR;TLOD=5.43	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:43,2:0.043:1:1:.:1427,70:20:23	0/0:45,2:0.043:2:0:.:1494,67:14:31
chr7	114629945	.	G	A	.	clustered_events;t_lod_fstar	ECNT=2;HCNT=3;MAX_ED=30;MIN_ED=30;NLOD=17.76;TLOD=6.06	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:74,3:0.039:3:0:1.00:2554,102:33:41	0/0:60,0:0.00:0:0:.:2057,0:21:39
chr7	117548682	.	C	A	.	t_lod_fstar	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=7.83;TLOD=5.48	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:15,3:0.188:1:2:0.667:531,105:5:10	0/0:31,0:0.00:0:0:.:1101,0:18:13
chr7	122013320	.	GTGA	G	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=11.33;RPA=6,5;RU=TGA;STR;TLOD=5.40	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:48,2:0.042:1:1:.:1667,69:32:16	0/0:53,1:0.019:1:0:.:1762,36:24:29
chr7	122133698	.	C	T	.	t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=44.50;TLOD=4.76	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:165,3:0.020:1:2:0.667:5608,97:81:84	0/0:171,0:0.00:0:0:.:5857,0:84:87
chr7	123684492	.	AAT	A	.	germline_risk;str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.558;RPA=8,7;RU=AT;STR;TLOD=4.64	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,2:0.333:1:1:.:137,68:3:1	0/0:2,0:0.00:0:0:.:68,0:1:1
chr7	128842748	.	A	T	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.81;TLOD=4.03	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:23,2:0.080:1:1:0.500:688,61:13:10	0/0:16,0:0.00:0:0:.:503,0:10:6
chr7	130041131	.	AAT	A	.	alt_allele_in_normal;str_contraction	ECNT=1;HCNT=12;MAX_ED=.;MIN_ED=.;NLOD=17.60;RPA=7,6;RU=AT;STR;TLOD=10.76	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:83,6:0.037:4:2:.:2449,196:38:36	0/0:80,2:0.012:2:0:.:2558,70:34:43
chr7	134576173	.	C	CT	.	germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.21;RPA=2,3;RU=T;STR;TLOD=8.78	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,3:0.600:2:1:.:62,103:0:2	0/0:4,0:0.00:0:0:.:135,0:1:3
chr7	138554858	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=45.35;TLOD=4.96	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:164,5:0.020:3:2:0.600:5661,165:82:82	0/0:162,1:6.494e-03:0:1:0.00:5582,5:76:86
chr7	140355625	.	CAG	C	.	alt_allele_in_normal;str_contraction	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.94;RPA=8,7;RU=AG;STR;TLOD=12.03	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:59,8:0.109:4:4:.:2001,271:24:35	0/0:58,4:0.067:4:0:.:1978,133:29:29
chr7	140601489	.	A	G	.	t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=14.40;TLOD=5.87	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:54,16:0.229:9:7:0.438:1709,113:32:22	0/0:64,7:0.099:4:3:0.429:2069,19:33:31
chr7	141836551	.	CAG	C	.	alt_allele_in_normal;germline_risk;str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.74;RPA=11,10;RU=AG;STR;TLOD=5.47	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:15,7:0.219:4:3:.:211,216:4:2	0/0:19,2:0.057:2:0:.:431,74:6:6
chr7	141838137	.	AATC	A	.	alt_allele_in_normal;str_contraction	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=16.96;RPA=7,6;RU=ATC;STR;TLOD=7.07	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:90,3:0.035:0:3:.:2994,101:58:32	0/0:85,2:0.024:2:0:.:2875,70:48:37
chr7	142027696	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=9.93;TLOD=4.20	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:46,2:0.044:1:1:0.500:1550,68:25:21	0/0:37,0:0.00:0:0:.:1246,0:18:19
chr7	143397542	.	A	G	.	alt_allele_in_normal;germline_risk;t_lod_fstar	ECNT=1;HCNT=14;MAX_ED=.;MIN_ED=.;NLOD=1.79;TLOD=5.01	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:57,43:0.430:27:16:0.372:1852,1427:31:26	0/0:43,21:0.328:11:10:0.476:1370,716:22:21
chr7	149494192	.	T	C	.	alt_allele_in_normal;t_lod_fstar	ECNT=1;HCNT=3;MAX_ED=.;MIN_ED=.;NLOD=60.27;TLOD=5.12	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:248,5:0.021:3:2:0.600:7587,130:117:131	0/0:238,3:0.013:1:2:0.333:7351,95:110:128
chr7	149892407	.	AAC	A	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=8.47;RPA=7,6;RU=AC;STR;TLOD=5.29	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:46,3:0.039:2:1:.:770,102:12:11	0/0:44,1:0.014:1:0:.:756,35:3:19
chr7	151082382	.	C	T	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=47.55;TLOD=4.37	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:210,3:0.015:1:2:0.667:7183,97:123:87	0/0:169,0:0.00:0:0:.:5823,0:93:76
chr7	151438033	.	T	C	.	alt_allele_in_normal;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=14.11;TLOD=5.27	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:102,3:0.032:2:1:0.667:3202,96:48:54	0/0:75,2:0.028:1:1:0.500:2348,63:39:36
chr7	151983183	.	TTTG	T	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=16.28;RPA=6,5;RU=TTG;STR;TLOD=5.16	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:64,2:0.032:2:0:.:2179,70:35:29	0/0:59,0:0.018:0:0:.:2018,0:34:25
chr7	152235876	.	G	A	.	alt_allele_in_normal;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=9.72;TLOD=4.34	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:104,3:0.030:1:2:0.333:3329,91:59:45	0/0:86,7:0.081:3:4:0.429:2742,161:45:41
chr7	152238907	.	A	G	.	alt_allele_in_normal;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.05;TLOD=6.11	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:21,3:0.125:2:1:0.333:697,99:11:10	0/0:25,1:0.042:0:1:1.00:848,37:9:16
chr7	152265028	.	G	T	.	alt_allele_in_normal;clustered_events	ECNT=3;HCNT=7;MAX_ED=55;MIN_ED=21;NLOD=3.61;TLOD=13.71	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:175,9:0.050:7:2:0.778:6221,297:92:83	0/0:239,20:0.076:11:9:0.550:8654,671:102:137
chr7	152265049	.	G	T	.	alt_allele_in_normal;clustered_events	ECNT=3;HCNT=5;MAX_ED=55;MIN_ED=21;NLOD=39.90;TLOD=10.49	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:342,8:0.027:6:2:0.750:11516,253:177:165	0/0:379,19:0.040:12:7:0.632:12951,611:170:209
chr7	152265083	.	C	A	.	alt_allele_in_normal;clustered_events	ECNT=3;HCNT=3;MAX_ED=55;MIN_ED=21;NLOD=47.95;TLOD=28.88	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:452,22:0.043:13:9:0.409:14342,743:245:207	0/0:469,22:0.043:13:9:0.409:15017,737:215:254
chr7	152265184	.	C	T	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=4;HCNT=3;MAX_ED=27;MIN_ED=21;NLOD=35.17;TLOD=4.76	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:152,4:0.027:3:1:0.250:5289,125:74:78	0/0:213,8:0.033:2:6:0.750:7479,247:93:120
chr7	152265205	.	C	G	.	alt_allele_in_normal;clustered_events	ECNT=4;HCNT=3;MAX_ED=27;MIN_ED=21;NLOD=10.95;TLOD=7.29	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:102,5:0.050:3:2:0.400:3529,165:53:49	0/0:157,11:0.069:5:6:0.545:5472,367:68:89
chr7	152265209	.	G	A	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=4;HCNT=3;MAX_ED=27;MIN_ED=21;NLOD=31.31;TLOD=4.83	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:94,2:0.022:1:1:0.500:0|1:152265209_G_A:3139,61:49:45	0/0:146,3:0.020:1:2:0.333:0|1:152265209_G_A:4874,95:61:85
chr7	152265211	.	T	C	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=4;HCNT=3;MAX_ED=27;MIN_ED=21;NLOD=31.31;TLOD=4.83	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:90,2:0.022:1:1:0.500:0|1:152265209_G_A:2802,62:46:44	0/0:143,3:0.021:1:2:0.333:0|1:152265209_G_A:4383,109:59:84
chr7	152825110	.	C	T	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=9.32;TLOD=4.08	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:53,4:0.063:2:2:0.500:1805,126:23:30	0/0:48,1:0.023:1:0:0.00:1644,31:26:22
chr7	157175007	.	T	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=13.24;TLOD=4.10	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:54,3:0.040:1:2:0.333:1676,102:30:24	0/0:46,0:0.00:0:0:.:1460,0:16:30
chr8	6898964	.	G	T	.	clustered_events;multi_event_alt_allele_in_normal;t_lod_fstar	ECNT=3;HCNT=8;MAX_ED=20;MIN_ED=13;NLOD=16.86;TLOD=5.32	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:52,2:0.038:2:0:1.00:0|1:6898964_G_T:1598,62:29:23	0/0:55,1:0.018:0:1:0.00:0|1:6898964_G_T:1705,33:35:20
chr8	6898977	.	G	C	.	alt_allele_in_normal;clustered_events;germline_risk;t_lod_fstar	ECNT=3;HCNT=8;MAX_ED=20;MIN_ED=13;NLOD=1.27;TLOD=5.18	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:55,2:0.033:2:0:1.00:0|1:6898964_G_T:1902,73:33:22	0/0:57,5:0.077:3:2:0.600:0|1:6898964_G_T:1972,184:38:19
chr8	6898984	.	G	A	.	alt_allele_in_normal;clustered_events;germline_risk;t_lod_fstar	ECNT=3;HCNT=8;MAX_ED=20;MIN_ED=13;NLOD=0.964;TLOD=5.12	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:62,2:0.031:2:0:1.00:0|1:6898964_G_T:2082,61:38:24	0/0:58,5:0.078:3:2:0.600:0|1:6898964_G_T:1992,157:35:23
chr8	12178718	.	A	G	.	alt_allele_in_normal	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=14.15;TLOD=8.71	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:129,7:0.058:3:4:0.571:4220,239:66:63	0/0:125,11:0.091:5:6:0.545:4059,389:63:62
chr8	12374861	.	G	T	.	PASS	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=7.26;TLOD=9.45	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:29,5:0.133:3:2:0.600:1016,150:16:13	0/0:44,1:0.025:0:1:0.00:1515,31:23:21
chr8	12378614	.	TTG	T	.	alt_allele_in_normal;str_contraction;t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=4.46;RPA=9,8;RU=TG;STR;TLOD=4.18	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:21,3:0.125:1:2:.:688,100:11:10	0/0:31,2:0.061:1:1:.:1010,65:19:12
chr8	12629153	.	G	GT	.	t_lod_fstar	ECNT=2;HCNT=6;MAX_ED=1;MIN_ED=1;NLOD=6.92;TLOD=4.76	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:29,4:0.077:4:0:.:0|1:12629153_G_GT:989,141:19:10	0/0:41,0:0.00:0:0:.:0|1:12629153_G_GT:1447,0:23:18
chr8	12629154	.	C	T	.	PASS	ECNT=2;HCNT=6;MAX_ED=1;MIN_ED=1;NLOD=6.92;TLOD=8.23	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:29,3:0.111:3:0:0.00:0|1:12629153_G_GT:1005,104:19:10	0/0:41,0:0.00:0:0:.:0|1:12629153_G_GT:1448,0:23:18
chr8	17150571	rs7842887	T	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=26.37	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,7:0.778:6:1:0.857:62,251:2:0	0/0:4,0:0.00:0:0:.:130,0:0:4
chr8	22073659	.	AAAAAAAAAAGAG	A	.	alt_allele_in_normal;germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.42;TLOD=26.21	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,9:0.600:6:3:.:122,284:2:2	0/0:5,1:0.143:1:0:.:154,30:3:2
chr8	22080213	.	T	C	.	alt_allele_in_normal;germline_risk;t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=0.605;TLOD=5.99	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:95,33:0.243:14:19:0.424:2844,129:45:50	0/0:89,33:0.295:18:15:0.545:2756,79:42:47
chr8	22162645	.	CGTG	C	.	alt_allele_in_normal;str_contraction	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=33.85;RPA=5,4;RU=GTG;STR;TLOD=7.30	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:139,3:0.023:2:1:.:4318,90:81:58	0/0:132,2:7.813e-03:2:0:.:4097,63:75:57
chr8	22162878	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=12.29;TLOD=4.09	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:39,2:0.049:1:1:0.500:1288,66:20:19	0/0:41,0:0.00:0:0:.:1358,0:18:23
chr8	22498050	.	T	C	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=19.52;TLOD=4.18	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:73,3:0.031:2:1:0.667:2441,107:36:37	0/0:74,0:0.00:0:0:.:2513,0:40:34
chr8	27520843	.	T	G	.	alt_allele_in_normal	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=3.20;TLOD=6.90	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:64,32:0.341:13:19:0.406:1589,86:43:21	0/0:62,19:0.253:9:10:0.474:1619,44:44:18
chr8	28351708	.	GGCA	G	.	alt_allele_in_normal;str_contraction	ECNT=1;HCNT=6;MAX_ED=.;MIN_ED=.;NLOD=15.69;RPA=8,7;RU=GCA;STR;TLOD=29.33	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:185,12:0.066:6:6:.:5463,356:100:85	0/0:145,7:0.048:3:4:.:4260,209:84:61
chr8	31087860	.	AAAG	A	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=16.11;RPA=5,4;RU=AAG;STR;TLOD=5.20	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:63,3:0.033:3:0:.:2115,102:24:39	0/0:76,1:0.014:1:0:.:2583,35:43:33
chr8	39998204	rs877290	T	C	.	germline_risk;t_lod_fstar	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=5.35	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,2:0.500:1:1:0.500:63,56:2:0	0/0:5,0:0.00:0:0:.:161,0:4:1
chr8	47440696	rs2306975	C	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=7.63	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:0,2:1.00:1:1:0.500:0,67:0:0	0/0:5,0:0.00:0:0:.:172,0:2:3
chr8	55950539	.	A	G	.	PASS	ECNT=1;HCNT=8;MAX_ED=.;MIN_ED=.;NLOD=63.78;TLOD=19.24	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:182,9:0.051:4:5:0.556:5673,304:94:88	0/0:240,1:4.444e-03:1:0:0.00:7524,34:113:127
chr8	61638394	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=3;MAX_ED=.;MIN_ED=.;NLOD=12.84;TLOD=4.28	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:30,2:0.061:2:0:1.00:988,66:14:16	0/0:40,0:0.00:0:0:.:1310,0:19:21
chr8	67343343	.	GGGA	G	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=28.73;RPA=4,3;RU=GGA;STR;TLOD=4.92	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:88,2:0.024:0:2:.:2861,67:53:35	0/0:112,1:9.091e-03:0:1:.:3771,28:54:58
chr8	69832124	.	ACAC	A	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=21.26;RPA=4,3;RU=CAC;STR;TLOD=5.02	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:81,3:0.027:0:3:.:2560,94:33:48	0/0:96,1:0.012:1:0:.:2982,34:47:49
chr8	72240602	rs4559286	A	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=8.15	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:0,2:1.00:2:0:0.00:0,72:0:0	0/0:5,0:0.00:0:0:.:172,0:3:2
chr8	80594950	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=18.05;TLOD=4.42	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:51,2:0.039:0:2:0.00:1738,64:23:28	0/0:61,0:0.00:0:0:.:2073,0:31:30
chr8	81694251	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=57.74;TLOD=4.88	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:133,3:0.024:2:1:0.667:4613,96:80:53	0/0:207,0:0.00:0:0:.:7284,0:102:105
chr8	85446195	.	C	T	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=13.80;TLOD=4.01	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:33,2:0.063:0:2:1.00:1116,63:13:20	0/0:49,0:0.00:0:0:.:1658,0:21:28
chr8	85655817	.	G	T	.	alt_allele_in_normal;t_lod_fstar;triallelic_site	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=261.49;TLOD=4.13	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:921,12:6.687e-03:7:5:0.583:31512,398:521:400	0/0:1671,35:9.974e-03:15:19:0.441:57231,1123:936:735
chr8	86427872	.	CTTT	C	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.02;RPA=12,9;RU=T;STR;TLOD=5.37	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:16,3:0.125:2:1:.:39,106:1:1	0/0:23,0:0.00:0:0:.:0,0:0:0
chr8	86532712	.	ATG	A	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.27;RPA=7,6;RU=TG;STR;TLOD=4.41	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:8,2:0.200:0:2:.:266,64:5:3	0/0:11,0:0.00:0:0:.:366,0:7:4
chr8	94940180	.	CTCT	C	.	alt_allele_in_normal;str_contraction	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=5.96;RPA=6,5;RU=TCT;STR;TLOD=6.49	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:40,3:0.079:2:1:.:1392,99:24:16	0/0:63,3:0.048:2:1:.:2172,99:36:27
chr8	95154147	.	G	A	.	PASS	ECNT=1;HCNT=8;MAX_ED=.;MIN_ED=.;NLOD=36.53;TLOD=7.55	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:102,4:0.043:2:2:0.500:3525,128:59:43	0/0:135,1:8.000e-03:0:1:0.00:4656,15:68:67
chr8	96160424	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=14;MAX_ED=.;MIN_ED=.;NLOD=59.75;TLOD=4.50	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:151,3:0.021:1:2:0.333:4810,94:80:71	0/0:213,0:0.00:0:0:.:6841,0:113:100
chr8	98782621	.	A	T	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.91;TLOD=4.29	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:9,2:0.182:0:2:1.00:295,56:5:4	0/0:15,0:0.00:0:0:.:496,0:7:8
chr8	99340899	.	G	C	.	t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=16.85;TLOD=4.63	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:33,3:0.065:2:1:0.667:1130,108:20:13	0/0:62,0:0.00:0:0:.:2162,0:34:28
chr8	99817836	.	G	C	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=22.22;TLOD=4.42	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:61,3:0.036:2:1:0.667:2090,106:29:32	0/0:79,0:0.00:0:0:.:2637,0:44:35
chr8	99892103	.	A	G	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=14.70;TLOD=4.80	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:21,2:0.087:2:0:0.00:704,68:12:9	0/0:49,0:0.00:0:0:.:1575,0:28:21
chr8	100063950	.	CCTT	C	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=41.70;RPA=4,3;RU=CTT;STR;TLOD=4.52	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:142,3:0.016:0:3:.:4878,105:78:64	0/0:153,0:0.00:0:0:.:5353,0:94:59
chr8	100550785	.	G	T	.	germline_risk;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.42;TLOD=4.18	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:34,2:0.061:2:0:1.00:1078,65:10:24	0/0:22,0:0.00:0:0:.:692,0:12:10
chr8	100705591	.	A	G	.	clustered_events;multi_event_alt_allele_in_normal	ECNT=2;HCNT=4;MAX_ED=13;MIN_ED=13;NLOD=8.36;TLOD=9.56	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:19,4:0.200:3:1:0.250:605,121:7:12	0/0:40,1:0.026:1:0:0.00:1324,26:22:18
chr8	100705604	.	G	C	.	clustered_events;multi_event_alt_allele_in_normal	ECNT=2;HCNT=4;MAX_ED=13;MIN_ED=13;NLOD=10.07;TLOD=18.36	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:20,6:0.273:4:2:0.667:707,211:7:13	0/0:50,1:0.021:1:0:1.00:1764,36:27:23
chr8	100706704	.	C	G	.	alt_allele_in_normal;clustered_events	ECNT=5;HCNT=12;MAX_ED=72;MIN_ED=33;NLOD=26.16;TLOD=10.76	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:107,6:0.061:3:3:0.500:3679,205:57:50	0/0:125,2:0.018:2:0:0.00:4317,69:72:53
chr8	100706737	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=5;HCNT=13;MAX_ED=72;MIN_ED=33;NLOD=18.41;TLOD=32.09	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:70,10:0.130:6:4:0.600:0|1:100706737_G_A:2312,325:34:36	0/0:84,2:0.023:2:0:1.00:0|1:100706737_G_A:2762,63:50:34
chr8	100706740	.	C	T	.	clustered_events;multi_event_alt_allele_in_normal	ECNT=5;HCNT=13;MAX_ED=72;MIN_ED=33;NLOD=17.50;TLOD=32.03	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:69,10:0.128:6:4:0.400:0|1:100706737_G_A:2459,311:35:34	0/0:81,1:0.024:1:0:0.00:0|1:100706737_G_A:2883,32:47:34
chr8	100706759	.	G	A	.	clustered_events;homologous_mapping_event	ECNT=5;HCNT=13;MAX_ED=72;MIN_ED=33;NLOD=24.33;TLOD=8.70	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:57,4:0.066:3:1:0.750:1874,132:24:33	0/0:81,0:0.00:0:0:.:2590,0:47:34
chr8	100706776	.	G	A	.	clustered_events;homologous_mapping_event	ECNT=5;HCNT=13;MAX_ED=72;MIN_ED=33;NLOD=23.12;TLOD=8.83	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:56,4:0.067:3:1:0.750:1821,133:29:27	0/0:77,0:0.00:0:0:.:2501,0:44:33
chr8	100706893	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=4;HCNT=8;MAX_ED=104;MIN_ED=17;NLOD=20.89;TLOD=7.95	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:67,4:0.155:2:2:0.500:1981,124:29:38	0/0:103,2:0.059:2:0:1.00:3100,65:55:48
chr8	100706910	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=4;HCNT=8;MAX_ED=104;MIN_ED=17;NLOD=23.14;TLOD=39.29	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:82,16:0.188:10:6:0.375:2686,538:39:43	0/0:120,3:0.019:3:0:0.00:3906,102:62:58
chr8	100706973	.	A	G	.	clustered_events;multi_event_alt_allele_in_normal	ECNT=4;HCNT=8;MAX_ED=104;MIN_ED=17;NLOD=19.50;TLOD=46.06	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:58,19:0.243:11:8:0.421:1872,644:27:31	0/0:82,1:0.013:1:0:0.00:2666,35:48:34
chr8	100706997	.	G	GGATGAGGTCTGGCACC	.	clustered_events;homologous_mapping_event	ECNT=4;HCNT=8;MAX_ED=104;MIN_ED=17;NLOD=15.17;TLOD=14.74	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:39,5:0.119:1:4:.:1331,166:15:24	0/0:51,0:0.00:0:0:.:1706,0:30:21
chr8	100709477	.	G	T	.	alt_allele_in_normal;clustered_events	ECNT=3;HCNT=8;MAX_ED=22;MIN_ED=4;NLOD=34.06;TLOD=15.36	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:145,5:0.043:2:3:0.400:0|1:100709477_G_T:5148,161:78:67	0/0:170,3:0.019:1:2:0.333:0|1:100709477_G_T:6140,90:94:76
chr8	100709481	.	T	A	.	alt_allele_in_normal;clustered_events	ECNT=3;HCNT=8;MAX_ED=22;MIN_ED=4;NLOD=32.56;TLOD=17.00	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:154,7:0.049:3:4:0.429:0|1:100709477_G_T:4807,221:79:75	0/0:167,3:0.020:1:2:0.333:0|1:100709477_G_T:5217,100:93:74
chr8	100709499	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=3;HCNT=16;MAX_ED=22;MIN_ED=4;NLOD=31.95;TLOD=37.34	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:159,17:0.108:9:8:0.529:5464,544:86:73	0/0:166,4:0.025:2:2:0.500:5826,134:92:74
chr8	100709584	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=5;HCNT=19;MAX_ED=87;MIN_ED=5;NLOD=32.80;TLOD=36.88	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:133,13:0.094:6:7:0.462:0|1:100709584_G_A:4264,402:75:58	0/0:148,3:0.014:3:0:1.00:0|1:100709584_G_A:4720,97:86:62
chr8	100709589	.	T	C	.	alt_allele_in_normal;clustered_events	ECNT=5;HCNT=19;MAX_ED=87;MIN_ED=5;NLOD=31.59;TLOD=35.27	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:134,11:0.090:4:7:0.364:0|1:100709584_G_A:4382,387:74:60	0/0:141,3:0.014:3:0:1.00:0|1:100709584_G_A:4667,108:84:57
chr8	100709611	.	C	A	.	alt_allele_in_normal;clustered_events	ECNT=5;HCNT=18;MAX_ED=87;MIN_ED=5;NLOD=29.08;TLOD=19.51	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:119,10:0.079:4:6:0.600:4142,334:68:51	0/0:139,3:0.015:2:1:0.333:4930,101:82:57
chr8	100709642	.	G	A	.	clustered_events;multi_event_alt_allele_in_normal	ECNT=5;HCNT=19;MAX_ED=87;MIN_ED=5;NLOD=20.60;TLOD=18.53	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:84,9:0.097:5:4:0.556:2755,285:47:37	0/0:95,1:0.011:0:1:0.00:3066,33:56:39
chr8	100709671	.	C	A	.	clustered_events;multi_event_alt_allele_in_normal	ECNT=5;HCNT=18;MAX_ED=87;MIN_ED=5;NLOD=18.56;TLOD=7.41	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:62,6:0.078:4:2:0.333:2154,166:37:25	0/0:92,1:0.012:0:1:1.00:3185,32:55:37
chr8	100713134	.	T	C	.	clustered_events;multi_event_alt_allele_in_normal;t_lod_fstar	ECNT=2;HCNT=2;MAX_ED=12;MIN_ED=12;NLOD=6.34;TLOD=5.81	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:28,2:0.067:1:1:0.500:0|1:100713134_T_C:896,56:15:13	0/0:39,1:0.028:1:0:1.00:0|1:100713134_T_C:1292,29:21:18
chr8	100713146	.	T	C	.	clustered_events;multi_event_alt_allele_in_normal;t_lod_fstar	ECNT=2;HCNT=2;MAX_ED=12;MIN_ED=12;NLOD=6.94;TLOD=5.84	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:28,2:0.069:1:1:0.500:0|1:100713134_T_C:938,73:17:11	0/0:39,1:0.026:1:0:1.00:0|1:100713134_T_C:1316,36:19:20
chr8	100715564	.	C	T	.	clustered_events;homologous_mapping_event;t_lod_fstar	ECNT=3;HCNT=8;MAX_ED=9;MIN_ED=4;NLOD=19.57;TLOD=5.24	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:56,2:0.035:2:0:0.00:0|1:100715564_C_T:1933,70:24:32	0/0:68,0:0.00:0:0:.:0|1:100715564_C_T:2365,0:39:29
chr8	100715568	.	T	C	.	clustered_events;homologous_mapping_event;t_lod_fstar	ECNT=3;HCNT=8;MAX_ED=9;MIN_ED=4;NLOD=18.96;TLOD=5.24	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:54,2:0.035:2:0:1.00:0|1:100715564_C_T:1725,69:23:31	0/0:66,0:0.00:0:0:.:0|1:100715564_C_T:2169,0:33:33
chr8	100715573	.	C	T	.	clustered_events;homologous_mapping_event;t_lod_fstar	ECNT=3;HCNT=8;MAX_ED=9;MIN_ED=4;NLOD=17.46;TLOD=5.41	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:46,2:0.043:2:0:0.00:0|1:100715564_C_T:1614,67:16:30	0/0:60,0:0.00:0:0:.:0|1:100715564_C_T:2109,0:30:30
chr8	100717808	.	T	TC	.	clustered_events;homologous_mapping_event	ECNT=4;HCNT=4;MAX_ED=37;MIN_ED=7;NLOD=18.97;TLOD=24.27	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:69,7:0.108:4:3:.:0|1:100717808_T_TC:2331,232:35:34	0/0:66,0:0.00:0:0:.:0|1:100717808_T_TC:2236,0:33:33
chr8	100717815	.	G	C	.	clustered_events;multi_event_alt_allele_in_normal	ECNT=4;HCNT=4;MAX_ED=37;MIN_ED=7;NLOD=15.19;TLOD=24.12	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:80,8:0.104:5:3:0.625:0|1:100717808_T_TC:2799,274:40:40	0/0:65,1:0.016:1:0:1.00:0|1:100717808_T_TC:2259,30:31:34
chr8	100717836	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=4;HCNT=4;MAX_ED=37;MIN_ED=7;NLOD=4.88;TLOD=34.94	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:96,13:0.121:7:6:0.538:0|1:100717836_G_A:2882,426:51:45	0/0:78,5:0.065:3:2:0.600:0|1:100717836_G_A:2404,158:40:38
chr8	100717845	.	T	C	.	alt_allele_in_normal;clustered_events	ECNT=4;HCNT=4;MAX_ED=37;MIN_ED=7;NLOD=4.58;TLOD=34.99	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:92,13:0.122:7:6:0.538:0|1:100717836_G_A:2879,416:48:44	0/0:85,5:0.066:3:2:0.600:0|1:100717836_G_A:2660,166:42:43
chr8	100718098	.	G	C	.	clustered_events;multi_event_alt_allele_in_normal;t_lod_fstar	ECNT=2;HCNT=2;MAX_ED=9;MIN_ED=9;NLOD=29.21;TLOD=4.64	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:129,2:0.018:1:1:0.500:0|1:100718098_G_C:4500,56:66:63	0/0:123,1:8.929e-03:1:0:1.00:0|1:100718098_G_C:4331,26:58:65
chr8	100718107	.	C	A	.	clustered_events;multi_event_alt_allele_in_normal;t_lod_fstar	ECNT=2;HCNT=2;MAX_ED=9;MIN_ED=9;NLOD=29.21;TLOD=4.60	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:130,2:0.017:1:1:0.500:0|1:100718098_G_C:4443,65:67:63	0/0:122,1:8.929e-03:1:0:0.00:0|1:100718098_G_C:4274,35:59:63
chr8	102655744	.	G	A	.	germline_risk;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=5.20	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,2:0.333:1:1:0.500:137,59:2:2	0/0:5,0:0.00:0:0:.:167,0:4:1
chr8	103401398	.	C	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=12.64;TLOD=4.48	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:24,2:0.077:1:1:0.500:828,66:16:8	0/0:42,0:0.00:0:0:.:1419,0:23:19
chr8	112289301	.	GCTA	G	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=22.25;RPA=5,4;RU=CTA;STR;TLOD=4.45	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:60,3:0.034:1:2:.:2092,106:31:29	0/0:76,0:0.00:0:0:.:2680,0:37:39
chr8	117805018	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.37;TLOD=4.80	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:14,2:0.125:0:2:0.00:493,65:8:6	0/0:18,0:0.00:0:0:.:602,0:11:7
chr8	119788618	.	C	T	.	germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=6.92	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,2:0.667:1:1:0.500:36,68:1:0	0/0:4,0:0.00:0:0:.:139,0:3:1
chr8	119788941	.	G	T	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=18.36;TLOD=4.00	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:34,2:0.056:2:0:1.00:1149,64:17:17	0/0:61,0:0.00:0:0:.:2138,0:25:36
chr8	120250886	.	A	C	.	PASS	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.36;TLOD=13.95	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,4:0.667:3:1:0.250:66,137:1:1	0/0:8,0:0.00:0:0:.:236,0:4:4
chr8	120453852	.	A	G	.	t_lod_fstar	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=21.97;TLOD=4.28	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:63,1:0.038:1:0:0.00:1985,37:35:28	0/0:83,0:0.00:0:0:.:2622,0:48:35
chr8	120548961	.	GGA	G	.	alt_allele_in_normal;str_contraction;t_lod_fstar	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=9.05;RPA=9,8;RU=GA;STR;TLOD=4.64	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:24,4:0.120:1:3:.:819,138:13:11	0/0:43,2:0.025:1:1:.:1462,69:27:16
chr8	123956022	.	GA	G	.	alt_allele_in_normal	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=5.79;RPA=2,1;RU=A;STR;TLOD=6.78	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:24,3:0.130:2:1:.:837,102:18:6	0/0:31,1:0.032:1:0:.:1099,36:20:11
chr8	124094704	.	C	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.32;TLOD=4.56	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:12,2:0.143:0:2:1.00:417,61:6:6	0/0:21,0:0.00:0:0:.:732,0:10:11
chr8	124589882	rs4871508	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=13.78	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,4:0.800:1:3:0.250:36,130:1:0	0/0:7,0:0.00:0:0:.:240,0:4:3
chr8	125182056	.	CTAT	C	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=20.15;RPA=3,2;RU=TAT;STR;TLOD=5.49	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:42,3:0.047:0:3:.:1436,106:21:21	0/0:68,0:0.00:0:0:.:2317,0:33:35
chr8	132172526	.	TAC	T	.	alt_allele_in_normal;str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=19.99;RPA=7,6;RU=AC;STR;TLOD=5.18	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:68,3:0.042:2:1:.:2187,98:36:32	0/0:89,2:0.022:2:0:.:2901,66:43:46
chr8	137698515	.	A	T	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.37;TLOD=4.49	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:9,2:0.182:1:1:0.500:269,58:5:4	0/0:18,0:0.00:0:0:.:532,0:14:4
chr8	140532162	.	TGA	T	.	alt_allele_in_normal;str_contraction;t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=23.38;RPA=7,6;RU=GA;STR;TLOD=4.95	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:88,3:0.037:3:0:.:2860,95:41:47	0/0:117,3:0.027:2:1:.:3758,99:52:65
chr8	142229504	.	CGAT	C	.	str_contraction	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=24.43;RPA=5,4;RU=GAT;STR;TLOD=11.11	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:87,5:0.050:3:2:.:2731,154:51:36	0/0:104,1:0.011:0:1:.:3242,2:60:44
chr8	143379594	rs62524012	A	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=7.15	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:0,2:1.00:0:2:1.00:0,62:0:0	0/0:4,0:0.00:0:0:.:108,0:2:2
chr8	144439943	.	C	T	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.92;TLOD=4.37	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:23,2:0.083:2:0:0.00:786,64:16:7	0/0:25,0:0.00:0:0:.:872,0:12:13
chr9	12704	.	C	T	.	germline_risk	ECNT=2;HCNT=1;MAX_ED=1;MIN_ED=1;NLOD=0.602;TLOD=16.91	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:1,4:0.800:3:1:0.250:0|1:12704_C_T:33,130:0:1	0/0:4,0:0.00:0:0:.:0|1:12704_C_T:139,0:1:3
chr9	12705	.	C	T	.	germline_risk	ECNT=2;HCNT=1;MAX_ED=1;MIN_ED=1;NLOD=0.602;TLOD=16.91	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:1,4:0.800:3:1:0.250:0|1:12704_C_T:33,124:0:1	0/0:3,0:0.00:0:0:.:0|1:12704_C_T:105,0:1:2
chr9	732779	rs10815563	A	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=9.77	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:3,3:0.500:2:1:0.333:94,102:0:3	0/0:5,0:0.00:0:0:.:151,0:1:4
chr9	734679	rs10429625	G	T	.	germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=2.41;TLOD=26.72	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:3,8:0.727:6:2:0.750:97,257:1:2	0/0:8,0:0.00:0:0:.:283,0:6:2
chr9	738238	rs2296052	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=24.10	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,7:0.778:3:4:0.429:72,232:2:0	0/0:4,0:0.00:0:0:.:140,0:3:1
chr9	2647560	.	C	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=7.82;TLOD=4.05	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:63,2:0.033:0:2:1.00:1953,69:41:22	0/0:26,0:0.00:0:0:.:798,0:12:14
chr9	2648199	.	C	T	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.85;TLOD=4.67	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:52,8:0.115:2:6:0.750:1514,91:24:28	0/0:29,2:0.067:2:0:0.00:841,4:17:12
chr9	3346544	.	A	ACT	.	germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.909;RPA=1,2;RU=CT;STR;TLOD=25.05	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,6:0.750:4:2:.:64,200:1:1	0/0:3,0:0.00:0:0:.:102,0:1:2
chr9	4793254	rs841990	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=12.32	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:3,4:0.571:1:3:0.250:106,125:2:1	0/0:5,0:0.00:0:0:.:172,0:3:2
chr9	5050706	rs10429491	C	T	.	alt_allele_in_normal	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.99;TLOD=61.41	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:40,26:0.404:15:11:0.423:1048,726:25:15	0/0:38,2:0.056:0:2:1.00:957,67:21:17
chr9	6587054	rs968197	A	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.31;TLOD=29.95	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:10,10:0.500:6:4:0.400:347,312:4:6	0/0:11,0:0.00:0:0:.:365,0:5:6
chr9	6594803	.	A	AAAAGAAAG	.	PASS	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.43;RPA=7,9;RU=AAAG;STR;TLOD=12.04	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,3:0.600:0:3:.:59,90:0:2	0/0:8,0:0.00:0:0:.:245,0:3:5
chr9	6604444	rs41303229	T	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=13.05	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,4:0.667:2:2:0.500:62,134:1:1	0/0:5,0:0.00:0:0:.:164,0:3:2
chr9	6675680	rs1658944	T	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=19.78	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,7:0.636:3:4:0.429:126,201:2:2	0/0:3,0:0.00:0:0:.:88,0:1:2
chr9	7598529	rs10120071	C	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=6.62	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,2:0.667:1:1:0.500:35,65:1:0	0/0:4,0:0.00:0:0:.:131,0:1:3
chr9	8338847	.	CAGAG	C	.	PASS	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=5.96;RPA=9,7;RU=AG;STR;TLOD=13.30	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:16,5:0.055:4:1:.:33,168:0:1	0/0:20,0:0.00:0:0:.:0,0:0:0
chr9	8341013	.	A	G	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=8.73;TLOD=4.49	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:26,2:0.069:0:2:1.00:847,67:13:13	0/0:29,0:0.00:0:0:.:938,0:13:16
chr9	13108795	rs3765550	T	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=19.84	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:5,6:0.545:6:0:1.00:155,203:3:2	0/0:5,0:0.00:0:0:.:154,0:1:4
chr9	13122156	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=6.32;TLOD=4.00	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:38,2:0.051:1:1:0.500:1331,65:18:20	0/0:24,0:0.00:0:0:.:848,0:12:12
chr9	14797301	rs117899256	C	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=7.22	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,2:0.667:0:2:1.00:35,71:1:0	0/0:4,0:0.00:0:0:.:136,0:4:0
chr9	14797415	.	G	GAC	.	germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;RPA=6,7;RU=AC;STR;TLOD=23.98	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:10,9:0.474:5:4:.:359,314:4:6	0/0:5,0:0.00:0:0:.:180,0:2:3
chr9	17143513	.	A	AG	.	germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.51;TLOD=9.34	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:6,3:0.333:3:0:.:195,81:4:2	0/0:5,0:0.00:0:0:.:167,0:4:1
chr9	18474375	.	TTG	T	.	str_contraction	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=4.19;RPA=8,7;RU=TG;STR;TLOD=9.47	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:29,5:0.147:4:1:.:988,173:22:7	0/0:14,0:0.00:0:0:.:480,0:7:7
chr9	18681698	.	G	GT	.	germline_risk;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.755;TLOD=4.97	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:7,4:0.286:4:0:.:33,144:2:0	0/0:4,0:0.00:0:0:.:0,0:0:0
chr9	18717793	rs572429	A	T	.	germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=13.42	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,4:0.800:2:2:0.500:33,126:0:1	0/0:5,0:0.00:0:0:.:152,0:3:2
chr9	18718517	rs556720	T	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.31;TLOD=54.91	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:15,18:0.552:9:9:0.500:460,634:7:8	0/0:11,0:0.00:0:0:.:349,0:8:3
chr9	19326055	rs2256093	G	T	.	PASS	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=13.20;TLOD=63.41	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:19,21:0.513:10:11:0.476:656,690:14:5	0/0:50,0:0.00:0:0:.:1728,0:30:20
chr9	19335162	rs11791904	A	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=15.48	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:8,6:0.385:5:1:0.167:256,204:5:3	0/0:8,0:0.00:0:0:.:261,0:4:4
chr9	19347206	rs2666801	T	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=14.45	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,4:0.667:4:0:1.00:69,142:0:2	0/0:7,0:0.00:0:0:.:237,0:4:3
chr9	20953050	rs3206852	A	G	.	alt_allele_in_normal	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.65;TLOD=70.89	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:23,26:0.512:9:17:0.654:719,875:13:10	0/0:25,1:0.040:0:1:1.00:782,34:15:10
chr9	21201696	.	T	C	.	t_lod_fstar	ECNT=1;HCNT=24;MAX_ED=.;MIN_ED=.;NLOD=62.00;TLOD=4.16	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:419,3:8.000e-03:1:2:0.333:14180,104:239:180	0/0:229,0:0.00:0:0:.:7749,0:118:111
chr9	30689215	.	A	G	.	alt_allele_in_normal;clustered_events	ECNT=4;HCNT=10;MAX_ED=101;MIN_ED=17;NLOD=13.07;TLOD=14.64	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:164,8:0.048:2:6:0.750:5055,273:80:84	0/0:96,4:0.041:2:2:0.500:2887,142:42:54
chr9	30689232	.	A	G	.	alt_allele_in_normal;clustered_events	ECNT=4;HCNT=10;MAX_ED=101;MIN_ED=17;NLOD=18.20;TLOD=7.06	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:188,5:0.028:2:3:0.600:6077,158:93:95	0/0:110,4:0.037:2:2:0.500:3592,127:48:62
chr9	30689287	.	T	C	.	alt_allele_in_normal;clustered_events	ECNT=4;HCNT=11;MAX_ED=101;MIN_ED=17;NLOD=27.15;TLOD=6.96	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:224,5:0.025:4:1:0.800:7182,172:99:125	0/0:124,2:0.017:2:0:1.00:4031,65:55:69
chr9	30689316	.	G	C	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=4;HCNT=12;MAX_ED=101;MIN_ED=17;NLOD=21.34;TLOD=4.28	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:176,3:0.019:3:0:1.00:5983,104:74:102	0/0:103,2:0.020:2:0:1.00:3645,69:48:55
chr9	30689544	.	A	T	.	clustered_events;homologous_mapping_event	ECNT=6;HCNT=2;MAX_ED=59;MIN_ED=1;NLOD=27.69;TLOD=20.70	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:195,8:0.044:3:5:0.625:0|1:30689544_A_T:6249,254:90:105	0/0:104,0:0.00:0:0:.:0|1:30689544_A_T:3373,0:54:50
chr9	30689545	.	T	C	.	clustered_events;homologous_mapping_event	ECNT=6;HCNT=2;MAX_ED=59;MIN_ED=1;NLOD=27.69;TLOD=20.70	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:195,8:0.044:3:5:0.375:0|1:30689544_A_T:6234,256:90:105	0/0:103,0:0.00:0:0:.:0|1:30689544_A_T:3391,0:53:50
chr9	30689577	.	G	T	.	alt_allele_in_normal;clustered_events	ECNT=6;HCNT=2;MAX_ED=59;MIN_ED=1;NLOD=19.28;TLOD=9.99	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:147,4:0.027:2:2:0.500:0|1:30689577_G_T:4937,120:69:78	0/0:80,3:0.037:1:2:0.333:0|1:30689577_G_T:2725,97:44:36
chr9	30689579	.	A	G	.	alt_allele_in_normal;clustered_events	ECNT=6;HCNT=2;MAX_ED=59;MIN_ED=1;NLOD=15.68;TLOD=9.98	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:145,4:0.026:2:2:0.500:0|1:30689577_G_T:4790,131:66:79	0/0:76,3:0.048:1:2:0.667:0|1:30689577_G_T:2506,105:40:36
chr9	30689588	.	T	C	.	alt_allele_in_normal;clustered_events	ECNT=6;HCNT=2;MAX_ED=59;MIN_ED=1;NLOD=17.79;TLOD=16.08	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:139,5:0.040:2:3:0.400:0|1:30689577_G_T:4530,176:62:77	0/0:82,4:0.044:1:3:0.250:0|1:30689577_G_T:2674,143:39:43
chr9	30689603	.	C	G	.	alt_allele_in_normal;clustered_events	ECNT=6;HCNT=2;MAX_ED=59;MIN_ED=1;NLOD=10.58;TLOD=32.80	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:124,9:0.079:4:5:0.556:0|1:30689577_G_T:4186,312:59:65	0/0:77,5:0.061:2:3:0.600:0|1:30689577_G_T:2633,176:33:44
chr9	30689968	.	T	C	.	alt_allele_in_normal;clustered_events	ECNT=8;HCNT=24;MAX_ED=151;MIN_ED=27;NLOD=11.87;TLOD=120.95	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:239,54:0.200:28:26:0.519:7699,1619:112:127	0/0:118,9:0.074:5:4:0.556:3818,275:63:55
chr9	30689995	.	A	G	.	alt_allele_in_normal;clustered_events	ECNT=8;HCNT=16;MAX_ED=151;MIN_ED=27;NLOD=11.85;TLOD=131.30	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:240,48:0.153:22:26:0.542:0|1:30689995_A_G:7591,1563:115:125	0/0:135,10:0.062:4:6:0.600:0|1:30689995_A_G:4240,327:68:67
chr9	30690005	.	C	CTG	.	alt_allele_in_normal;clustered_events	ECNT=8;HCNT=16;MAX_ED=151;MIN_ED=27;NLOD=4.35;TLOD=140.03	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:250,42:0.150:20:22:.:0|1:30689995_A_G:8348,1453:119:131	0/0:140,12:0.073:4:8:.:0|1:30689995_A_G:4728,418:70:70
chr9	30690007	.	A	C	.	alt_allele_in_normal;clustered_events	ECNT=8;HCNT=16;MAX_ED=151;MIN_ED=27;NLOD=3.76;TLOD=133.67	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:251,36:0.145:16:20:0.556:0|1:30689995_A_G:7909,1230:117:134	0/0:142,12:0.074:4:8:0.667:0|1:30689995_A_G:4422,420:71:71
chr9	30690053	.	T	C	.	alt_allele_in_normal;clustered_events	ECNT=8;HCNT=24;MAX_ED=151;MIN_ED=27;NLOD=18.84;TLOD=59.94	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:299,23:0.079:12:11:0.522:0|1:30690053_T_C:9639,647:133:166	0/0:171,8:0.048:4:4:0.500:0|1:30690053_T_C:5535,233:97:74
chr9	30690075	.	G	C	.	alt_allele_in_normal;clustered_events	ECNT=8;HCNT=24;MAX_ED=151;MIN_ED=27;NLOD=18.18;TLOD=71.49	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:282,25:0.087:16:9:0.640:0|1:30690053_T_C:9095,884:128:154	0/0:162,7:0.043:3:4:0.429:0|1:30690053_T_C:5188,244:93:69
chr9	30690114	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=8;HCNT=24;MAX_ED=151;MIN_ED=27;NLOD=23.54;TLOD=30.40	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:228,11:0.049:9:2:0.818:0|1:30690114_G_A:7825,355:104:124	0/0:146,4:0.029:3:1:0.750:0|1:30690114_G_A:5031,131:76:70
chr9	30690119	.	C	G	.	alt_allele_in_normal;clustered_events	ECNT=8;HCNT=24;MAX_ED=151;MIN_ED=27;NLOD=21.73;TLOD=30.60	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:219,11:0.051:9:2:0.182:0|1:30690114_G_A:6498,359:106:113	0/0:137,4:0.030:3:1:0.250:0|1:30690114_G_A:4136,136:71:66
chr9	33447426	rs591810	C	G	.	PASS	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.41;TLOD=17.98	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:13,7:0.350:1:6:0.857:443,203:7:6	0/0:9,0:0.00:0:0:.:300,0:5:4
chr9	33613905	.	A	G	.	alt_allele_in_normal;clustered_events	ECNT=4;HCNT=6;MAX_ED=17;MIN_ED=10;NLOD=3.51;TLOD=33.88	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:72,10:0.139:5:5:0.500:0|1:33613905_A_G:2308,302:43:29	0/0:52,2:0.057:2:0:0.00:0|1:33613905_A_G:1665,59:23:29
chr9	33613915	.	T	G	.	alt_allele_in_normal;clustered_events;germline_risk	ECNT=4;HCNT=6;MAX_ED=17;MIN_ED=10;NLOD=2.15;TLOD=43.08	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:72,11:0.163:7:4:0.636:0|1:33613905_A_G:2215,367:40:32	0/0:50,3:0.058:1:2:0.333:0|1:33613905_A_G:1538,95:24:26
chr9	33613917	.	A	G	.	alt_allele_in_normal;clustered_events;germline_risk	ECNT=4;HCNT=6;MAX_ED=17;MIN_ED=10;NLOD=2.15;TLOD=45.80	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:72,13:0.171:8:5:0.385:0|1:33613905_A_G:2367,431:40:32	0/0:49,3:0.058:1:2:0.667:0|1:33613905_A_G:1625,99:24:25
chr9	33613922	.	C	A	.	alt_allele_in_normal;clustered_events	ECNT=4;HCNT=4;MAX_ED=17;MIN_ED=10;NLOD=7.50;TLOD=24.30	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:70,11:0.139:6:5:0.455:2438,347:42:28	0/0:45,2:0.040:0:2:1.00:1584,66:24:21
chr9	33617693	.	TGGATGTAACACG	T	.	germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=11.41	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,3:0.750:1:2:.:29,97:1:0	0/0:4,0:0.00:0:0:.:123,0:3:1
chr9	34224633	rs7856567	C	T	.	germline_risk;t_lod_fstar	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.61;TLOD=5.50	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:9,2:0.250:2:0:0.00:275,65:4:5	0/0:12,0:0.00:0:0:.:352,0:5:7
chr9	34379001	rs3818830	A	T	.	germline_risk	DB;ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=3.91;TLOD=31.40	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:8,10:0.556:4:6:0.600:265,320:4:4	0/0:13,0:0.00:0:0:.:438,0:7:6
chr9	34485648	rs2274591	C	T	.	germline_risk;t_lod_fstar	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=6.05	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,2:0.500:1:1:0.500:70,63:1:1	0/0:4,0:0.00:0:0:.:132,0:1:3
chr9	35062985	.	CAAG	C	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=29.45;RPA=4,3;RU=AAG;STR;TLOD=4.24	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:213,2:0.011:1:1:.:7476,70:98:115	0/0:110,0:0.00:0:0:.:3874,0:49:61
chr9	35664627	rs75010572	C	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=24.08	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:10,8:0.444:3:5:0.625:306,256:2:8	0/0:4,0:0.00:0:0:.:134,0:0:4
chr9	35676070	.	T	C	.	t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=5.97;TLOD=4.21	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:46,2:0.044:1:1:0.500:1433,68:29:17	0/0:22,0:0.00:0:0:.:676,0:10:12
chr9	35810428	.	T	G	.	alt_allele_in_normal;germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.548;TLOD=10.65	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:66,14:0.159:10:4:0.714:1821,68:34:32	0/0:28,4:0.125:2:2:0.500:793,45:13:15
chr9	35825544	.	TTTC	T	.	alt_allele_in_normal;str_contraction	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=14.40;RPA=5,4;RU=TTC;STR;TLOD=20.11	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:132,8:0.062:5:3:.:4393,264:87:45	0/0:84,2:0.026:0:2:.:2817,69:44:40
chr9	35833451	rs10738948	T	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=11.15	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:7,5:0.400:2:3:0.400:230,159:4:3	0/0:5,0:0.00:0:0:.:162,0:2:3
chr9	36003021	.	G	A	.	PASS	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.82;TLOD=69.73	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:24,24:0.511:11:13:0.458:837,724:13:11	0/0:17,0:0.00:0:0:.:604,0:12:5
chr9	36923306	.	ATC	A	.	alt_allele_in_normal;str_contraction	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.80;RPA=7,6;RU=TC;STR;TLOD=8.87	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:112,7:0.049:4:3:.:3471,225:53:59	0/0:49,2:0.043:0:2:.:1512,65:29:20
chr9	37436635	.	CCTCT	C	.	alt_allele_in_normal	ECNT=1;HCNT=8;MAX_ED=.;MIN_ED=.;NLOD=40.80;RPA=8,6;RU=CT;STR;TLOD=10.54	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:376,5:5.669e-03:2:3:.:10932,162:161:168	0/0:199,5:7.797e-03:2:2:.:5604,137:76:90
chr9	38414033	.	T	TCACACA	.	germline_risk	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=0.997;RPA=15,18;RU=CA;STR;TLOD=20.66	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:21,16:0.128:0:1:.:34,34:0:1	0/0:18,2:0.030:0:0:.:34,0:1:0
chr9	38571979	.	T	TTAAA	.	clustered_events	ECNT=2;HCNT=1;MAX_ED=10;MIN_ED=10;NLOD=8.43;TLOD=70.64	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:33,18:0.380:6:12:.:0|1:38571979_T_TTAAA:1046,565:13:20	0/0:32,0:0.00:0:0:.:0|1:38571979_T_TTAAA:1016,0:17:15
chr9	38571989	.	C	G	.	alt_allele_in_normal;clustered_events	ECNT=2;HCNT=1;MAX_ED=10;MIN_ED=10;NLOD=5.07;TLOD=67.43	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:37,19:0.352:8:11:0.579:0|1:38571979_T_TTAAA:1268,670:13:24	0/0:32,1:0.033:0:1:1.00:0|1:38571979_T_TTAAA:1139,35:16:16
chr9	38572111	.	C	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=45.73	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:14,15:0.517:6:9:0.600:395,484:5:9	0/0:7,0:0.00:0:0:.:199,0:4:3
chr9	38586133	.	T	C	.	germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=20.81	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,6:0.750:2:4:0.333:68,209:0:2	0/0:7,0:0.00:0:0:.:239,0:5:2
chr9	39073709	.	G	A	.	alt_allele_in_normal	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=14.93;TLOD=48.24	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:61,18:0.228:7:11:0.389:1605,587:32:29	0/0:84,3:0.034:3:0:1.00:2292,98:42:42
chr9	39358958	.	T	G	.	alt_allele_in_normal;clustered_events	ECNT=2;HCNT=2;MAX_ED=18;MIN_ED=18;NLOD=14.08;TLOD=19.46	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:62,12:0.162:6:6:0.500:1996,398:34:28	0/0:190,3:0.016:3:0:1.00:6147,102:90:100
chr9	39358976	.	G	T	.	alt_allele_in_normal;clustered_events	ECNT=2;HCNT=3;MAX_ED=18;MIN_ED=18;NLOD=11.16;TLOD=18.67	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:68,12:0.150:5:7:0.417:2323,390:36:32	0/0:193,3:0.016:3:0:1.00:6641,98:98:95
chr9	41008927	.	A	T	.	alt_allele_in_normal	ECNT=1;HCNT=12;MAX_ED=.;MIN_ED=.;NLOD=4.04;TLOD=7.72	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:232,4:0.019:2:2:0.500:7448,133:126:106	0/0:121,21:0.150:13:8:0.381:3899,704:64:57
chr9	42186682	.	T	C	.	PASS	ECNT=1;HCNT=8;MAX_ED=.;MIN_ED=.;NLOD=6.05;TLOD=11.15	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:128,6:0.045:2:4:0.333:4029,201:54:74	0/0:96,1:0.011:1:0:1.00:3097,34:39:57
chr9	42817143	.	C	G	.	alt_allele_in_normal;germline_risk	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=0.930;TLOD=7.86	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:49,4:0.080:3:1:0.250:1665,128:28:21	0/0:40,3:0.073:2:1:0.333:1370,100:11:29
chr9	42886813	.	G	C	.	PASS	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=11.57;TLOD=27.71	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:72,14:0.203:9:5:0.643:2594,450:34:38	0/0:81,1:0.015:0:1:0.00:2868,36:40:41
chr9	62843946	.	G	T	.	alt_allele_in_normal;clustered_events	ECNT=2;HCNT=19;MAX_ED=97;MIN_ED=97;NLOD=3.17;TLOD=27.78	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:90,16:0.167:10:6:0.625:3040,521:50:40	0/0:91,8:0.092:5:3:0.625:3161,244:57:34
chr9	62844043	.	T	C	.	alt_allele_in_normal;clustered_events;germline_risk	ECNT=2;HCNT=21;MAX_ED=97;MIN_ED=97;NLOD=1.07;TLOD=7.03	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:24,4:0.143:2:2:0.500:786,114:15:9	0/0:36,3:0.083:2:1:0.667:1193,82:25:11
chr9	63326808	.	C	T	.	alt_allele_in_normal	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.36;TLOD=18.36	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:38,9:0.200:6:3:0.333:1303,295:21:17	0/0:35,2:0.054:0:2:1.00:1204,70:12:23
chr9	63986097	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.51;TLOD=4.93	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:11,2:0.154:1:1:0.500:383,64:3:8	0/0:15,0:0.00:0:0:.:532,0:4:11
chr9	64134571	.	G	T	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=2;HCNT=2;MAX_ED=77;MIN_ED=77;NLOD=4.15;TLOD=4.46	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:38,3:0.083:3:0:1.00:1265,99:22:16	0/0:28,1:0.038:0:1:0.00:948,32:15:13
chr9	64134648	.	GAT	G	.	clustered_events;germline_risk;str_contraction;t_lod_fstar	ECNT=2;HCNT=2;MAX_ED=77;MIN_ED=77;NLOD=2.10;RPA=7,6;RU=AT;STR;TLOD=5.36	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:3,2:0.400:1:1:.:103,72:1:2	0/0:7,0:0.00:0:0:.:234,0:4:3
chr9	64369923	.	C	T	.	germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.602;TLOD=11.42	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,4:0.800:3:1:0.250:36,135:1:0	0/0:12,0:0.00:0:0:.:417,0:8:4
chr9	64498516	.	T	G	.	PASS	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=2.66;TLOD=15.25	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:7,5:0.417:2:3:0.400:200,173:4:3	0/0:17,0:0.00:0:0:.:491,0:8:9
chr9	65390880	.	G	A	.	clustered_events;germline_risk;homologous_mapping_event	ECNT=3;HCNT=5;MAX_ED=43;MIN_ED=17;NLOD=1.20;TLOD=10.53	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:3,4:0.571:2:2:0.500:103,133:1:2	0/0:10,0:0.00:0:0:.:326,0:10:0
chr9	65390897	.	C	T	.	clustered_events;germline_risk;homologous_mapping_event	ECNT=3;HCNT=5;MAX_ED=43;MIN_ED=17;NLOD=1.50;TLOD=9.72	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:5,4:0.444:2:2:0.500:147,132:3:2	0/0:9,0:0.00:0:0:.:267,0:9:0
chr9	65390923	.	A	T	.	clustered_events;germline_risk;homologous_mapping_event	ECNT=3;HCNT=6;MAX_ED=43;MIN_ED=17;NLOD=1.20;TLOD=8.65	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:6,3:0.375:2:1:0.333:193,94:2:4	0/0:6,0:0.00:0:0:.:195,0:6:0
chr9	67082705	.	C	T	.	PASS	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=4.82;TLOD=32.61	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:42,17:0.302:7:10:0.588:1391,536:25:17	0/0:23,0:0.00:0:0:.:749,0:14:9
chr9	67867112	.	A	G	.	germline_risk;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=5.40	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:7,3:0.300:3:0:0.00:200,84:2:5	0/0:7,0:0.00:0:0:.:228,0:5:2
chr9	68384399	.	T	C	.	alt_allele_in_normal;germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.808;TLOD=166.10	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:49,56:0.543:35:21:0.625:1547,1921:24:25	0/0:45,3:0.070:0:3:0.00:1426,104:24:21
chr9	68387342	.	C	T	.	alt_allele_in_normal	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.25;TLOD=7.26	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:32,4:0.111:2:2:0.500:1085,124:20:12	0/0:27,1:0.036:1:0:0.00:913,27:9:18
chr9	69072437	rs59524766	T	G	.	germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=20.87	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:5,6:0.545:1:5:0.167:163,213:2:3	0/0:5,0:0.00:0:0:.:161,0:4:1
chr9	70217367	.	A	G	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=9.33;TLOD=4.14	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:45,2:0.047:1:1:0.500:1509,67:10:35	0/0:32,0:0.00:0:0:.:1064,0:15:17
chr9	70640516	rs1538669	G	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=17.87	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,5:0.714:4:1:0.800:70,173:1:1	0/0:7,0:0.00:0:0:.:246,0:1:6
chr9	71712418	rs11142967	T	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=11.80	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:5,4:0.444:2:2:0.500:158,128:2:3	0/0:4,0:0.00:0:0:.:128,0:1:3
chr9	71716460	rs4745117	A	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.71;TLOD=33.89	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:18,11:0.379:5:6:0.545:610,372:7:11	0/0:9,0:0.00:0:0:.:303,0:7:2
chr9	76169577	rs11144772	A	T	.	germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=2.71;TLOD=35.03	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:5,11:0.688:9:2:0.182:162,341:5:0	0/0:9,0:0.00:0:0:.:288,0:2:7
chr9	76707758	rs680775	A	G	.	clustered_events;germline_risk	DB;ECNT=2;HCNT=2;MAX_ED=46;MIN_ED=46;NLOD=3.31;TLOD=41.38	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:27,15:0.395:8:7:0.467:877,454:12:15	0/0:12,0:0.00:0:0:.:396,0:5:7
chr9	76707804	rs680729	A	G	.	clustered_events;germline_risk	DB;ECNT=2;HCNT=2;MAX_ED=46;MIN_ED=46;NLOD=3.61;TLOD=53.92	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:17,16:0.500:7:9:0.563:566,560:6:11	0/0:12,0:0.00:0:0:.:406,0:6:6
chr9	76708051	.	T	C	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=9.63;TLOD=4.45	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:48,2:0.042:1:1:0.500:1489,71:31:17	0/0:33,0:0.00:0:0:.:1032,0:18:15
chr9	76710699	rs611461	A	G	.	PASS	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=8.13;TLOD=52.35	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:18,19:0.529:6:13:0.684:572,575:6:12	0/0:27,0:0.00:0:0:.:866,0:19:8
chr9	77815886	rs2289121	C	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=13.02	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,4:0.800:2:2:0.500:37,122:0:1	0/0:5,0:0.00:0:0:.:183,0:2:3
chr9	78308334	rs3739476	C	T	.	clustered_events;germline_risk	DB;ECNT=2;HCNT=2;MAX_ED=17;MIN_ED=17;NLOD=3.61;TLOD=68.53	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:5,20:0.800:13:7:0.350:145,652:4:1	0/0:12,0:0.00:0:0:.:429,0:7:5
chr9	78308351	.	T	C	.	clustered_events;t_lod_fstar	ECNT=2;HCNT=2;MAX_ED=17;MIN_ED=17;NLOD=7.22;TLOD=4.45	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:36,2:0.053:1:1:0.500:1120,69:23:13	0/0:24,0:0.00:0:0:.:747,0:16:8
chr9	83335396	.	G	A	.	germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.16;TLOD=12.73	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:3,4:0.571:2:2:0.500:84,129:1:2	0/0:4,0:0.00:0:0:.:96,0:1:3
chr9	83678802	rs10780623	C	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=6.63	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,2:0.667:1:1:0.500:26,65:1:0	0/0:5,0:0.00:0:0:.:132,0:4:1
chr9	84871952	.	C	G	.	PASS	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.31;TLOD=15.75	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:25,6:0.194:4:2:0.333:879,195:11:14	0/0:11,0:0.00:0:0:.:373,0:6:5
chr9	86132716	rs75022145	G	A	.	germline_risk;t_lod_fstar	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=5.56	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,2:0.500:1:1:0.500:69,59:0:2	0/0:8,0:0.00:0:0:.:268,0:3:5
chr9	87971128	rs622418	G	A	.	PASS	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.02;TLOD=99.11	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:21,37:0.620:10:27:0.270:591,1179:7:14	0/0:23,0:0.00:0:0:.:688,0:14:9
chr9	89450661	.	A	G	.	PASS	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=3.58;TLOD=8.86	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:12,4:0.250:0:4:1.00:353,126:4:8	0/0:13,0:0.00:0:0:.:353,0:8:5
chr9	90216772	rs10992530	C	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=17.25	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:6,6:0.500:4:2:0.333:214,184:3:3	0/0:4,0:0.00:0:0:.:135,0:3:1
chr9	90232462	.	T	C	.	germline_risk;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.06;TLOD=4.90	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:6,2:0.250:2:0:1.00:195,61:2:4	0/0:7,0:0.00:0:0:.:199,0:3:4
chr9	91325511	rs16907384	T	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=20.31	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:8,6:0.429:3:3:0.500:264,216:4:4	0/0:4,0:0.00:0:0:.:138,0:2:2
chr9	93035717	rs4073460	C	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=12.90	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,4:0.500:1:3:0.750:143,134:3:1	0/0:6,0:0.00:0:0:.:211,0:1:5
chr9	93666175	rs10992840	A	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.35;TLOD=11.79	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:8,4:0.333:2:2:0.500:266,132:4:4	0/0:5,0:0.00:0:0:.:161,0:2:3
chr9	93673427	rs3829758	T	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=8.87	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:3,3:0.500:2:1:0.667:92,93:2:1	0/0:4,0:0.00:0:0:.:107,0:1:3
chr9	94325915	.	G	A	.	alt_allele_in_normal	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=6.62;TLOD=8.93	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:48,7:0.104:2:5:0.286:1527,233:21:27	0/0:35,2:0.063:0:2:0.00:1155,69:14:21
chr9	94496169	rs11793742	G	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=17.91	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,5:0.833:4:1:0.800:36,167:0:1	0/0:4,0:0.00:0:0:.:140,0:2:2
chr9	94558845	rs1048510	T	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=12.89	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,4:0.500:3:1:0.750:123,134:1:3	0/0:7,0:0.00:0:0:.:214,0:1:6
chr9	94567310	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=27.84;TLOD=4.50	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:172,3:0.018:3:0:1.00:5331,96:84:88	0/0:99,0:0.00:0:0:.:2971,0:44:55
chr9	95516676	.	TTTC	T	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=15.61;RPA=5,4;RU=TTC;STR;TLOD=4.86	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:87,2:0.023:2:0:.:2859,67:45:42	0/0:52,0:0.00:0:0:.:1691,0:28:24
chr9	96324000	rs72621424	C	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=24.79	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:9,8:0.471:4:4:0.500:304,267:5:4	0/0:7,0:0.00:0:0:.:245,0:4:3
chr9	96729306	rs7860672	G	T	.	clustered_events;germline_risk	DB;ECNT=2;HCNT=2;MAX_ED=22;MIN_ED=22;NLOD=1.81;TLOD=22.67	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:9,7:0.438:4:3:0.571:306,241:2:7	0/0:6,0:0.00:0:0:.:205,0:4:2
chr9	96729328	.	CA	C	.	clustered_events;germline_risk	ECNT=2;HCNT=2;MAX_ED=22;MIN_ED=22;NLOD=1.50;RPA=2,1;RU=A;STR;TLOD=12.21	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,4:0.500:2:2:.:144,143:2:2	0/0:5,0:0.00:0:0:.:182,0:4:1
chr9	96827014	rs7848710	C	T	.	germline_risk;t_lod_fstar	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=6.12	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,2:0.667:1:1:0.500:35,60:0:1	0/0:4,0:0.00:0:0:.:132,0:2:2
chr9	96931805	.	T	G	.	alt_allele_in_normal	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.35;TLOD=35.14	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:43,16:0.281:13:3:0.813:1365,469:22:21	0/0:32,2:0.061:0:2:0.00:997,56:13:19
chr9	96938687	.	C	T	.	PASS	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.27;TLOD=9.87	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:27,5:0.156:0:5:1.00:919,163:12:15	0/0:45,1:0.022:0:1:1.00:1519,33:20:25
chr9	97599582	rs958346	C	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.61;TLOD=23.10	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:11,8:0.421:6:2:0.250:354,249:3:8	0/0:12,0:0.00:0:0:.:400,0:7:5
chr9	97669850	rs16923269	C	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=11.83	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:0,3:1.00:0:3:1.00:0,104:0:0	0/0:4,0:0.00:0:0:.:144,0:2:2
chr9	97922437	rs3183928	A	C	.	germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=16.78	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:5,7:0.500:3:4:0.571:158,243:2:3	0/0:4,0:0.00:0:0:.:121,0:2:2
chr9	97994609	.	C	CT	.	alt_allele_in_normal	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=3.80;RPA=6,7;RU=T;STR;TLOD=57.53	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:21,31:0.617:16:15:.:712,1034:14:7	0/0:29,2:0.069:1:1:.:949,68:17:12
chr9	98005248	rs1131641	C	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.80;TLOD=8.64	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:6,3:0.333:2:1:0.333:171,97:2:4	0/0:6,0:0.00:0:0:.:169,0:2:4
chr9	98056788	.	T	G	.	alt_allele_in_normal;germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.79;TLOD=42.65	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:14,16:0.552:8:8:0.500:441,434:6:8	0/0:16,1:0.059:0:1:0.00:461,28:8:8
chr9	98081135	rs4237190	A	G	.	alt_allele_in_normal	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=2.24;TLOD=101.91	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:18,32:0.646:23:9:0.281:602,1040:7:11	0/0:20,1:0.050:0:1:1.00:649,33:12:8
chr9	98091784	.	A	AAAAT	.	germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;RPA=5,6;RU=AAAT;STR;TLOD=7.04	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:6,2:0.250:2:0:.:177,63:3:3	0/0:6,0:0.00:0:0:.:175,0:2:4
chr9	98135011	.	A	G	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.81;TLOD=4.16	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:40,2:0.048:2:0:0.00:1204,67:18:22	0/0:16,0:0.00:0:0:.:493,0:9:7
chr9	98577879	.	A	G	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.92;TLOD=4.58	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:36,2:0.054:1:1:0.500:1214,70:22:14	0/0:23,0:0.00:0:0:.:765,0:10:13
chr9	98840262	.	A	AC	.	germline_risk	ECNT=1;HCNT=8;MAX_ED=.;MIN_ED=.;NLOD=1.50;RPA=6,7;RU=C;STR;TLOD=9.49	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:5,5:0.500:3:2:.:138,148:2:3	0/0:5,0:0.00:0:0:.:142,0:5:0
chr9	103005920	rs12057060	T	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=12.60	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,4:0.500:2:2:0.500:123,131:1:3	0/0:6,0:0.00:0:0:.:185,0:3:3
chr9	104102289	rs2274725	C	T	.	germline_risk;t_lod_fstar	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=6.12	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,2:0.667:2:0:0.00:28,60:1:0	0/0:5,0:0.00:0:0:.:165,0:5:0
chr9	104123051	rs7350223	A	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.01;TLOD=27.74	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:19,10:0.346:6:4:0.400:593,342:12:7	0/0:10,0:0.00:0:0:.:313,0:6:4
chr9	104598897	.	TGTTA	T	.	alt_allele_in_normal	ECNT=1;HCNT=23;MAX_ED=.;MIN_ED=.;NLOD=18.10;TLOD=59.66	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:158,20:0.112:7:13:.:5060,648:89:69	0/0:128,4:0.033:1:3:.:4154,129:59:69
chr9	104599158	.	G	C	.	alt_allele_in_normal;clustered_events	ECNT=3;HCNT=2;MAX_ED=21;MIN_ED=11;NLOD=2.74;TLOD=69.16	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:51,26:0.310:16:10:0.615:0|1:104599158_G_C:1679,818:26:25	0/0:95,3:0.032:1:2:0.333:0|1:104599158_G_C:3256,97:34:61
chr9	104599169	.	AGC	A	.	alt_allele_in_normal;clustered_events	ECNT=3;HCNT=2;MAX_ED=21;MIN_ED=11;NLOD=5.73;TLOD=8.42	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:54,3:0.054:1:2:.:1784,103:31:23	0/0:99,6:0.061:3:3:.:3178,185:41:58
chr9	104599179	.	G	A	.	alt_allele_in_normal;clustered_events;germline_risk	ECNT=3;HCNT=2;MAX_ED=21;MIN_ED=11;NLOD=0.560;TLOD=46.06	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:36,13:0.260:8:5:0.615:0|1:104599158_G_C:1256,431:17:19	0/0:102,4:0.039:3:1:0.750:0|1:104599158_G_C:3533,138:43:59
chr9	104605348	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=8;HCNT=4;MAX_ED=45;MIN_ED=9;NLOD=21.93;TLOD=23.12	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:123,8:0.065:6:2:0.750:0|1:104605348_G_A:4180,271:54:69	0/0:108,2:0.018:1:1:0.500:0|1:104605348_G_A:3640,66:50:58
chr9	104605357	.	T	A	.	alt_allele_in_normal;clustered_events	ECNT=8;HCNT=4;MAX_ED=45;MIN_ED=9;NLOD=19.82;TLOD=23.58	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:109,8:0.073:6:2:0.750:0|1:104605348_G_A:3456,247:45:64	0/0:108,2:0.018:1:1:0.500:0|1:104605348_G_A:3386,63:51:57
chr9	104605372	.	G	C	.	alt_allele_in_normal;clustered_events	ECNT=8;HCNT=3;MAX_ED=45;MIN_ED=9;NLOD=10.57;TLOD=10.89	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:90,4:0.044:1:3:0.250:0|1:104605372_G_C:3006,114:37:53	0/0:110,3:0.027:2:1:0.667:0|1:104605372_G_C:3798,84:49:61
chr9	104605382	.	T	C	.	alt_allele_in_normal;clustered_events	ECNT=8;HCNT=3;MAX_ED=45;MIN_ED=9;NLOD=8.46;TLOD=11.13	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:76,4:0.051:1:3:0.250:0|1:104605372_G_C:2371,147:31:45	0/0:110,4:0.035:3:1:0.750:0|1:104605372_G_C:3507,140:49:61
chr9	104605383	.	AGC	A	.	alt_allele_in_normal;clustered_events	ECNT=8;HCNT=5;MAX_ED=45;MIN_ED=9;NLOD=4.14;TLOD=89.25	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:48,26:0.357:13:13:.:1575,845:16:32	0/0:102,9:0.084:4:5:.:3299,294:48:54
chr9	104605384	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=8;HCNT=3;MAX_ED=45;MIN_ED=9;NLOD=7.86;TLOD=11.13	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:70,4:0.051:1:3:0.250:0|1:104605372_G_C:2335,136:28:42	0/0:110,4:0.044:3:1:0.750:0|1:104605372_G_C:3810,133:50:60
chr9	104605385	.	C	G	.	alt_allele_in_normal;clustered_events	ECNT=8;HCNT=3;MAX_ED=45;MIN_ED=9;NLOD=7.56;TLOD=11.20	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:71,4:0.053:1:3:0.750:0|1:104605372_G_C:2161,134:28:43	0/0:110,4:0.044:3:1:0.250:0|1:104605372_G_C:3424,138:50:60
chr9	104605393	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=8;HCNT=3;MAX_ED=45;MIN_ED=9;NLOD=3.34;TLOD=11.50	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:60,4:0.063:1:3:0.250:0|1:104605372_G_C:2049,134:21:39	0/0:102,5:0.049:4:1:0.800:0|1:104605372_G_C:3594,159:45:57
chr9	104837200	rs2297400	T	C	.	germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=2.41;TLOD=21.36	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:7,8:0.533:5:3:0.625:193,220:3:4	0/0:8,0:0.00:0:0:.:258,0:4:4
chr9	105850023	.	A	G	.	PASS	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=3.61;TLOD=36.51	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:14,12:0.480:8:4:0.333:450,395:10:4	0/0:13,0:0.00:0:0:.:423,0:2:11
chr9	106924446	.	T	C	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=10.83;TLOD=4.20	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:72,2:0.028:2:0:1.00:2309,72:32:40	0/0:38,0:0.00:0:0:.:1199,0:17:21
chr9	108878244	rs3818875	G	C	.	clustered_events;germline_risk	DB;ECNT=2;HCNT=4;MAX_ED=29;MIN_ED=29;NLOD=1.81;TLOD=13.29	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:5,4:0.444:0:4:0.00:175,141:3:2	0/0:6,0:0.00:0:0:.:216,0:2:4
chr9	108878273	rs10435855	T	G	.	clustered_events;germline_risk	DB;ECNT=2;HCNT=4;MAX_ED=29;MIN_ED=29;NLOD=1.50;TLOD=14.45	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,4:0.667:0:4:0.00:63,142:2:0	0/0:5,0:0.00:0:0:.:157,0:1:4
chr9	108879631	.	GAACT	G	.	germline_risk;str_contraction	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.885;RPA=2,1;RU=AACT;STR;TLOD=6.74	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,2:0.333:1:1:.:144,69:2:2	0/0:3,0:0.00:0:0:.:108,0:2:1
chr9	108889127	rs3780507	A	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=6.46	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,2:0.667:0:2:1.00:34,66:1:0	0/0:6,0:0.00:0:0:.:197,0:4:2
chr9	108910880	rs62575182	T	C	.	germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=0.508;TLOD=15.79	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:7,6:0.462:3:3:0.500:196,165:4:3	0/0:4,1:0.200:1:0:1.00:130,2:1:3
chr9	108939513	rs41278361	A	G	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.19;TLOD=57.60	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:25,20:0.455:14:6:0.300:779,612:18:7	0/0:14,1:0.067:0:1:1.00:419,28:6:8
chr9	108990669	rs28361119	A	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=7.45	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,3:0.429:2:1:0.333:132,81:2:2	0/0:6,0:0.00:0:0:.:197,0:2:4
chr9	110137089	.	ACAG	A	.	alt_allele_in_normal;str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.49;RPA=6,5;RU=CAG;STR;TLOD=5.79	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:31,2:0.065:0:2:.:888,54:14:17	0/0:31,1:0.033:1:0:.:958,32:15:16
chr9	111329707	rs314451	G	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=10.65	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,4:0.750:3:1:0.750:36,138:1:0	0/0:6,0:0.00:0:0:.:203,0:4:2
chr9	111705166	.	T	TACACACACACAC	.	clustered_events;homologous_mapping_event;triallelic_site	ECNT=4;HCNT=1;MAX_ED=32;MIN_ED=2;NLOD=2.71;TLOD=10.51	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:3,3:0.400:0:0:.:99,0:1:2	0/0:9,0:0.00:0:0:.:299,0:6:3
chr9	111705168	.	T	C	.	clustered_events;homologous_mapping_event	ECNT=4;HCNT=2;MAX_ED=32;MIN_ED=2;NLOD=2.71;TLOD=25.80	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:4,7:0.636:3:4:0.429:0|1:111705168_T_C:127,232:1:3	0/0:9,0:0.00:0:0:.:0|1:111705168_T_C:294,0:6:3
chr9	111705170	.	T	C	.	clustered_events;homologous_mapping_event	ECNT=4;HCNT=2;MAX_ED=32;MIN_ED=2;NLOD=2.71;TLOD=27.15	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:4,7:0.714:3:4:0.429:0|1:111705168_T_C:128,237:1:3	0/0:9,0:0.00:0:0:.:0|1:111705168_T_C:298,0:6:3
chr9	111705198	.	T	C	.	clustered_events;homologous_mapping_event	ECNT=4;HCNT=1;MAX_ED=32;MIN_ED=2;NLOD=2.74;TLOD=12.62	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:7,8:0.533:5:3:0.625:224,257:5:2	0/0:9,0:0.00:0:0:.:297,0:6:3
chr9	111728028	rs7470491	T	C	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.34;TLOD=77.91	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:29,30:0.529:16:14:0.533:929,901:12:17	0/0:20,1:0.053:1:0:1.00:650,29:9:11
chr9	112149503	rs781954	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.21;TLOD=40.59	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:13,13:0.500:7:6:0.538:451,423:6:7	0/0:14,0:0.00:0:0:.:493,0:4:10
chr9	112997939	.	A	G	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.72;TLOD=4.55	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:37,2:0.053:1:1:0.500:1171,70:21:16	0/0:22,0:0.00:0:0:.:708,0:14:8
chr9	113178766	rs3810912	T	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=22.82	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:16,9:0.375:5:4:0.556:504,251:7:9	0/0:6,0:0.00:0:0:.:193,0:1:5
chr9	113206582	rs45623732	T	C	.	alt_allele_in_normal	DB;ECNT=1;HCNT=3;MAX_ED=.;MIN_ED=.;NLOD=6.39;TLOD=147.06	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:47,48:0.524:23:25:0.479:1498,1682:20:27	0/0:50,2:0.041:1:1:0.500:1590,74:29:21
chr9	113275900	rs10116039	C	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=24.45	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:9,8:0.471:6:2:0.250:234,257:8:1	0/0:7,0:0.00:0:0:.:192,0:4:3
chr9	113284500	rs17764013	T	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=16.30	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,5:0.556:2:3:0.400:129,166:3:1	0/0:7,0:0.00:0:0:.:229,0:3:4
chr9	113354203	rs10981762	A	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.82;TLOD=43.54	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:18,16:0.471:9:7:0.438:575,462:13:5	0/0:16,1:0.063:1:0:0.00:514,17:11:5
chr9	113425365	.	GGCA	G	.	alt_allele_in_normal;str_contraction;t_lod_fstar	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=6.57;RPA=7,6;RU=GCA;STR;TLOD=4.88	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:65,2:0.030:0:2:.:2160,69:30:35	0/0:32,1:0.031:1:0:.:1087,35:18:14
chr9	113484036	.	A	G	.	PASS	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.71;TLOD=9.74	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:6,3:0.333:1:2:0.667:193,108:3:3	0/0:9,0:0.00:0:0:.:302,0:7:2
chr9	113505320	rs75626382	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=8.34	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:6,3:0.333:3:0:1.00:181,94:0:6	0/0:4,0:0.00:0:0:.:143,0:3:1
chr9	113505422	.	C	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.92;TLOD=4.23	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:40,3:0.073:2:1:0.333:1295,73:24:16	0/0:24,0:0.00:0:0:.:793,0:13:11
chr9	114008496	rs3748183	C	T	.	alt_allele_in_normal;clustered_events;germline_risk	DB;ECNT=2;HCNT=1;MAX_ED=9;MIN_ED=9;NLOD=1.04;TLOD=74.23	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:32,26:0.385:13:13:0.500:0|1:114008496_C_T:953,813:13:19	0/0:31,2:0.091:2:0:0.00:0|1:114008496_C_T:991,63:14:17
chr9	114008505	rs3748182	G	A	.	alt_allele_in_normal;clustered_events;germline_risk	DB;ECNT=2;HCNT=1;MAX_ED=9;MIN_ED=9;NLOD=0.743;TLOD=82.79	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:37,30:0.390:16:14:0.533:0|1:114008496_C_T:1069,977:16:21	0/0:29,3:0.094:2:1:0.667:0|1:114008496_C_T:890,97:15:14
chr9	114095376	rs7036734	T	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.21;TLOD=37.50	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:13,11:0.458:3:8:0.273:375,394:8:5	0/0:14,0:0.00:0:0:.:427,0:8:6
chr9	114097489	rs3810929	T	C	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.70;TLOD=43.24	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:17,16:0.483:11:5:0.688:475,515:7:10	0/0:19,2:0.095:0:2:0.00:580,33:8:11
chr9	114178138	rs13295426	A	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=31.43	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:5,9:0.643:5:4:0.444:163,311:3:2	0/0:6,0:0.00:0:0:.:196,0:3:3
chr9	114250887	rs2808799	C	G	.	germline_risk;t_lod_fstar	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=6.25	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,2:0.500:1:1:0.500:72,65:2:0	0/0:4,0:0.00:0:0:.:132,0:2:2
chr9	114282178	rs1628968	A	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.01;TLOD=27.70	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:8,10:0.556:4:6:0.600:252,283:5:3	0/0:10,0:0.00:0:0:.:319,0:4:6
chr9	114283890	rs1565502	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.71;TLOD=30.30	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:12,10:0.455:4:6:0.400:412,323:5:7	0/0:9,0:0.00:0:0:.:303,0:4:5
chr9	114289306	rs72762675	C	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=29.23	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:14,11:0.435:8:3:0.273:421,350:7:7	0/0:6,0:0.00:0:0:.:180,0:5:1
chr9	114323519	.	G	A	.	clustered_events;germline_risk	ECNT=2;HCNT=2;MAX_ED=12;MIN_ED=12;NLOD=0.602;TLOD=8.66	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:13,4:0.235:1:3:0.250:449,127:7:6	0/0:7,0:0.00:0:0:.:237,0:5:2
chr9	114323531	.	A	C	.	clustered_events;germline_risk	ECNT=2;HCNT=2;MAX_ED=12;MIN_ED=12;NLOD=1.50;TLOD=8.46	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:15,4:0.211:1:3:0.750:479,135:9:6	0/0:9,0:0.00:0:0:.:290,0:7:2
chr9	114408030	rs2274160	C	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=8.73	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:5,3:0.375:2:1:0.333:150,96:2:3	0/0:3,0:0.00:0:0:.:88,0:2:1
chr9	114904398	rs3181367	G	A	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.74;TLOD=53.20	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:15,17:0.531:6:11:0.353:507,547:10:5	0/0:16,1:0.059:0:1:0.00:545,29:7:9
chr9	116227647	rs13290387	G	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=9.52	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:3,3:0.500:1:2:0.333:101,101:0:3	0/0:5,0:0.00:0:0:.:166,0:2:3
chr9	116442681	rs1321923	C	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=17.57	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:10,6:0.375:3:3:0.500:361,193:7:3	0/0:6,0:0.00:0:0:.:207,0:2:4
chr9	118764129	rs1472883	A	G	.	germline_risk;t_lod_fstar	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.21;TLOD=5.46	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:14,2:0.143:2:0:0.00:459,70:5:9	0/0:15,0:0.00:0:0:.:490,0:5:10
chr9	120525129	rs77536827	C	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=43.27	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:7,13:0.650:6:7:0.538:251,427:1:6	0/0:6,0:0.00:0:0:.:209,0:3:3
chr9	120720944	.	CTT	C	.	germline_risk	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=0.900;RPA=3,1;RU=T;STR;TLOD=35.40	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,9:0.750:5:4:.:143,302:4:0	0/0:3,0:0.00:0:0:.:109,0:0:3
chr9	120721954	rs10985001	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=13.45	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,4:0.667:0:4:0.00:62,132:2:0	0/0:4,0:0.00:0:0:.:114,0:4:0
chr9	121046254	.	A	G	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=8.73;TLOD=4.04	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:73,2:0.029:2:0:0.00:2376,70:33:40	0/0:32,0:0.00:0:0:.:1054,0:18:14
chr9	121763491	.	T	C	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.32;TLOD=4.06	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:58,2:0.038:1:1:0.500:1888,68:27:31	0/0:22,0:0.00:0:0:.:708,0:9:13
chr9	122511106	.	A	AT	.	alt_allele_in_normal	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.33;RPA=7,8;RU=T;STR;TLOD=40.55	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:48,33:0.397:18:15:.:1420,955:27:21	0/0:41,6:0.119:0:6:.:1249,190:19:22
chr9	122724732	.	T	C	.	alt_allele_in_normal;clustered_events	ECNT=3;HCNT=4;MAX_ED=6;MIN_ED=4;NLOD=8.52;TLOD=18.80	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:150,9:0.060:6:3:0.667:0|1:122724732_T_C:4658,281:77:73	0/0:93,6:0.062:2:4:0.333:0|1:122724732_T_C:2894,206:58:35
chr9	122724736	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=3;HCNT=4;MAX_ED=6;MIN_ED=4;NLOD=14.79;TLOD=11.89	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:145,4:0.034:2:2:0.500:0|1:122724732_T_C:4932,128:75:70	0/0:89,4:0.042:1:3:0.250:0|1:122724732_T_C:3034,123:56:33
chr9	122724738	.	T	C	.	alt_allele_in_normal;clustered_events	ECNT=3;HCNT=4;MAX_ED=6;MIN_ED=4;NLOD=13.89;TLOD=10.10	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:139,3:0.028:2:1:0.667:0|1:122724732_T_C:4412,91:73:66	0/0:86,2:0.043:0:2:0.00:0|1:122724732_T_C:2750,68:54:32
chr9	124483133	rs7037254	C	T	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.14;TLOD=82.61	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:18,27:0.600:12:15:0.556:603,829:4:14	0/0:15,1:0.063:1:0:0.00:512,32:7:8
chr9	124873595	rs113069294	C	T	.	germline_risk;t_lod_fstar	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.12;TLOD=4.49	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:24,2:0.077:1:1:0.500:798,66:14:10	0/0:17,0:0.00:0:0:.:569,0:7:10
chr9	125302139	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=18.01;TLOD=4.86	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:135,3:0.023:2:1:0.667:4546,98:80:55	0/0:62,0:0.00:0:0:.:2121,0:36:26
chr9	127317952	rs56067901	G	A	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.74;TLOD=37.13	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:19,13:0.406:3:10:0.231:657,404:13:6	0/0:17,1:0.056:0:1:0.00:608,32:10:7
chr9	127344499	rs7863063	C	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.41;TLOD=13.25	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,4:0.667:3:1:0.250:53,130:2:0	0/0:8,0:0.00:0:0:.:221,0:5:3
chr9	127354132	rs4072239	G	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.41;TLOD=11.68	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:6,4:0.400:3:1:0.750:206,127:1:5	0/0:8,0:0.00:0:0:.:269,0:6:2
chr9	127392978	rs4074695	T	G	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.65;TLOD=55.50	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:20,18:0.474:8:10:0.444:587,583:10:10	0/0:28,1:0.034:0:1:0.00:816,36:16:12
chr9	127402539	rs3802367	T	C	.	germline_risk;t_lod_fstar	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=6.09	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:3,2:0.400:2:0:1.00:99,66:0:3	0/0:4,0:0.00:0:0:.:136,0:3:1
chr9	127405111	rs3824413	C	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.01;TLOD=33.86	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:6,10:0.625:7:3:0.300:208,337:2:4	0/0:10,0:0.00:0:0:.:344,0:6:4
chr9	127434906	rs3923309	T	C	.	clustered_events;germline_risk	DB;ECNT=2;HCNT=2;MAX_ED=40;MIN_ED=40;NLOD=1.50;TLOD=12.16	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:5,4:0.444:3:1:0.750:162,133:5:0	0/0:5,0:0.00:0:0:.:167,0:3:2
chr9	127434946	rs3923308	G	A	.	clustered_events;germline_risk	DB;ECNT=2;HCNT=2;MAX_ED=40;MIN_ED=40;NLOD=2.96;TLOD=21.68	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:9,7:0.438:6:1:0.857:245,231:5:4	0/0:10,0:0.00:0:0:.:259,0:5:5
chr9	127450831	rs2247310	G	C	.	germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=27.74	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:0,7:1.00:3:4:0.429:0,244:0:0	0/0:3,0:0.00:0:0:.:94,0:3:0
chr9	127454672	rs2244218	G	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.71;TLOD=32.63	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:6,11:0.647:5:6:0.455:201,321:4:2	0/0:9,0:0.00:0:0:.:313,0:2:7
chr9	127457464	rs2243903	T	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.82;TLOD=30.11	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:16,10:0.385:6:4:0.600:552,333:9:7	0/0:16,0:0.00:0:0:.:551,0:4:12
chr9	127525282	.	A	AGAG	.	germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.21;RPA=1,2;RU=GAG;STR;TLOD=30.55	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:0,6:1.00:3:3:.:0,203:0:0	0/0:5,0:0.00:0:0:.:174,0:3:2
chr9	127526952	.	GT	G	.	germline_risk;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.600;RPA=3,2;RU=T;STR;TLOD=5.35	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,2:0.333:1:1:.:139,63:3:1	0/0:2,0:0.00:0:0:.:71,0:1:1
chr9	127787765	rs3217740	C	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.01;TLOD=26.55	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:5,8:0.615:4:4:0.500:153,265:1:4	0/0:10,0:0.00:0:0:.:302,0:5:5
chr9	128153052	.	GCA	G	.	alt_allele_in_normal;str_contraction	ECNT=1;HCNT=6;MAX_ED=.;MIN_ED=.;NLOD=5.74;RPA=7,6;RU=CA;STR;TLOD=19.44	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:137,10:0.073:7:3:.:3925,296:79:58	0/0:74,5:0.068:3:2:.:2095,138:28:46
chr9	128253000	rs2267958	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.71;TLOD=44.87	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:15,16:0.516:11:5:0.688:519,477:9:6	0/0:9,0:0.00:0:0:.:318,0:4:5
chr9	128353089	rs111417655	A	G	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.872;TLOD=66.19	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:30,24:0.429:15:9:0.375:985,815:17:13	0/0:29,2:0.074:2:0:0.00:930,63:13:16
chr9	128600229	rs117664291	G	A	.	germline_risk;t_lod_fstar	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=5.58	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:8,2:0.200:1:1:0.500:277,68:3:5	0/0:7,0:0.00:0:0:.:249,0:4:3
chr9	128755281	.	GCA	G	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=11.37;RPA=6,5;RU=CA;STR;TLOD=5.05	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:102,3:0.029:0:3:.:3596,109:45:57	0/0:49,1:0.020:0:1:.:1698,36:23:26
chr9	129142338	.	TTG	T	.	alt_allele_in_normal;germline_risk;str_contraction	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=2.01;RPA=9,8;RU=TG;STR;TLOD=7.34	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:14,4:0.222:1:3:.:462,130:10:4	0/0:8,1:0.111:1:0:.:266,28:5:3
chr9	129380132	rs28361625	A	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=9.95	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,4:0.667:4:0:0.00:62,109:2:0	0/0:4,0:0.00:0:0:.:100,0:0:4
chr9	129752610	rs2241270	C	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=15.27	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:5,5:0.500:1:4:0.800:163,159:2:3	0/0:6,0:0.00:0:0:.:202,0:3:3
chr9	130083410	rs7868870	G	A	.	clustered_events;germline_risk	DB;ECNT=2;HCNT=2;MAX_ED=34;MIN_ED=34;NLOD=0.903;TLOD=9.75	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,3:0.750:2:1:0.667:32,93:0:1	0/0:3,0:0.00:0:0:.:107,0:2:1
chr9	130083444	rs7855078	T	A	.	clustered_events;germline_risk	DB;ECNT=2;HCNT=2;MAX_ED=34;MIN_ED=34;NLOD=1.50;TLOD=13.73	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:3,4:0.571:1:3:0.250:99,139:0:3	0/0:5,0:0.00:0:0:.:161,0:3:2
chr9	130668313	.	GGT	G	.	alt_allele_in_normal;str_contraction;t_lod_fstar;triallelic_site	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.38;RPA=8,7;RU=GT;STR;TLOD=6.19	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:80,6:0.042:2:2:.:2598,135:46:34	0/0:42,2:0.025:0:2:.:1368,68:22:20
chr9	130884102	.	CAAG	C	.	alt_allele_in_normal;germline_risk;str_contraction	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=0.865;RPA=5,4;RU=AAG;STR;TLOD=20.67	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:167,8:0.050:2:6:.:5863,287:66:101	0/0:97,7:0.065:2:5:.:3412,245:42:55
chr9	131066769	.	C	T	.	PASS	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.71;TLOD=8.94	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:6,3:0.333:3:0:0.00:215,100:3:3	0/0:9,0:0.00:0:0:.:318,0:3:6
chr9	131085381	.	C	T	.	clustered_events;germline_risk;homologous_mapping_event	ECNT=3;HCNT=1;MAX_ED=9;MIN_ED=5;NLOD=2.11;TLOD=6.93	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:7,2:0.222:1:1:0.500:0|1:131085381_C_T:212,59:1:6	0/0:6,0:0.00:0:0:.:0|1:131085381_C_T:201,0:3:3
chr9	131085386	.	T	C	.	clustered_events;germline_risk;homologous_mapping_event	ECNT=3;HCNT=1;MAX_ED=9;MIN_ED=5;NLOD=1.81;TLOD=9.78	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:7,2:0.273:1:1:0.500:0|1:131085381_C_T:198,70:1:6	0/0:6,0:0.00:0:0:.:0|1:131085381_C_T:193,0:3:3
chr9	131085390	.	C	T	.	clustered_events;germline_risk;homologous_mapping_event	ECNT=3;HCNT=1;MAX_ED=9;MIN_ED=5;NLOD=1.81;TLOD=9.78	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:8,3:0.273:2:1:0.333:0|1:131085381_C_T:277,95:3:5	0/0:6,0:0.00:0:0:.:0|1:131085381_C_T:205,0:3:3
chr9	131091908	.	C	A	.	clustered_events;germline_risk	ECNT=2;HCNT=4;MAX_ED=15;MIN_ED=15;NLOD=1.81;TLOD=13.59	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:6,5:0.455:3:2:0.400:205,145:2:4	0/0:6,0:0.00:0:0:.:196,0:2:4
chr9	131091923	.	T	TCA	.	clustered_events;germline_risk	ECNT=2;HCNT=4;MAX_ED=15;MIN_ED=15;NLOD=0.605;RPA=1,2;RU=CA;STR;TLOD=7.00	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:5,2:0.286:1:1:.:146,62:1:4	0/0:2,0:0.00:0:0:.:65,0:1:1
chr9	131506100	.	G	GT	.	alt_allele_in_normal	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=8.01;RPA=9,10;RU=T;STR;TLOD=10.12	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:33,40:0.388:24:13:.:1143,1278:22:11	0/0:37,3:0.056:2:1:.:1270,110:21:16
chr9	131512152	rs59515295	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=50.01	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:16,16:0.516:10:6:0.625:537,517:6:10	0/0:7,0:0.00:0:0:.:245,0:1:6
chr9	131513175	rs77176471	C	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.21;TLOD=25.10	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:11,8:0.421:3:5:0.625:363,269:7:4	0/0:15,0:0.00:0:0:.:495,0:10:5
chr9	131602192	rs13301422	T	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=12.22	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,4:0.800:4:0:1.00:29,114:1:0	0/0:5,0:0.00:0:0:.:162,0:4:1
chr9	132198044	.	AAGG	A	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=8;MAX_ED=.;MIN_ED=.;NLOD=15.34;RPA=4,3;RU=AGG;STR;TLOD=4.77	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:104,3:0.021:2:1:.:3342,97:51:53	0/0:55,0:0.00:0:0:.:1754,0:25:30
chr9	132863827	rs2285938	C	T	.	germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=2.71;TLOD=18.12	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:5,6:0.545:2:4:0.667:147,185:3:2	0/0:9,0:0.00:0:0:.:315,0:3:6
chr9	133225178	rs45612939	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.01;TLOD=9.03	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:6,3:0.375:1:2:0.333:188,99:3:3	0/0:11,0:0.00:0:0:.:361,0:3:8
chr9	133226121	rs10119590	G	A	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.54;TLOD=56.06	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:22,20:0.486:10:10:0.500:645,650:13:9	0/0:19,1:0.056:1:0:1.00:554,34:8:11
chr9	133226228	rs2002962	T	C	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.24;TLOD=38.14	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:20,13:0.387:5:8:0.385:610,451:10:10	0/0:17,1:0.056:0:1:0.00:532,37:8:9
chr9	133257367	rs8176722	C	A	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=5.30;TLOD=97.99	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:69,36:0.354:18:18:0.500:2340,1154:36:33	0/0:47,3:0.061:0:3:1.00:1601,82:20:27
chr9	133262197	.	C	T	.	germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=2.06;TLOD=21.29	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:6,8:0.583:5:3:0.375:208,250:3:3	0/0:7,0:0.00:0:0:.:195,0:3:4
chr9	133573728	.	G	A	.	germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=15.25	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:5,5:0.500:2:3:0.400:178,159:4:1	0/0:5,0:0.00:0:0:.:174,0:3:2
chr9	133657065	rs1611131	A	G	.	alt_allele_in_normal	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=9.37;TLOD=95.44	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:70,41:0.389:18:23:0.561:2218,1175:42:28	0/0:88,5:0.050:1:4:0.800:2784,157:46:42
chr9	133671511	rs2797840	G	A	.	germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.80;TLOD=7.82	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:3,3:0.500:2:1:0.667:93,82:0:3	0/0:7,0:0.00:0:0:.:193,0:4:3
chr9	133671671	rs2519123	C	G	.	PASS	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.01;TLOD=15.47	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:6,6:0.500:4:2:0.333:212,197:2:4	0/0:10,0:0.00:0:0:.:350,0:7:3
chr9	133704882	rs2502747	G	A	.	germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=13.42	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,4:0.800:2:2:0.500:29,126:0:1	0/0:4,0:0.00:0:0:.:107,0:2:2
chr9	134041659	.	A	AC	.	germline_risk	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=7.30	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:5,3:0.375:2:1:.:160,95:3:2	0/0:4,0:0.00:0:0:.:127,0:2:2
chr9	134429009	rs3118570	G	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.91;TLOD=53.92	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:17,17:0.500:7:10:0.412:469,560:7:10	0/0:13,0:0.00:0:0:.:368,0:7:6
chr9	134825764	rs7868111	T	C	.	PASS	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.32;TLOD=40.35	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:13,14:0.500:5:9:0.357:423,454:9:4	0/0:21,0:0.00:0:0:.:690,0:12:9
chr9	135495637	rs2274650	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.82;TLOD=46.39	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:11,14:0.560:7:7:0.500:364,472:7:4	0/0:16,0:0.00:0:0:.:547,0:7:9
chr9	135499671	rs2274651	A	C	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.737;TLOD=13.55	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:23,5:0.208:3:2:0.400:745,165:15:8	0/0:15,1:0.067:1:0:0.00:466,33:9:6
chr9	135815228	rs3739464	G	A	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.24;TLOD=27.19	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:8,9:0.529:7:2:0.778:270,280:3:5	0/0:15,1:0.063:1:0:1.00:513,31:6:9
chr9	135933271	rs6569	A	C	.	germline_risk;t_lod_fstar	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=5.45	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,2:0.500:2:0:0.00:64,57:2:0	0/0:6,0:0.00:0:0:.:190,0:5:1
chr9	136050547	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.85;TLOD=4.10	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:25,2:0.077:2:0:1.00:779,62:14:11	0/0:13,0:0.00:0:0:.:410,0:9:4
chr9	136447051	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=6.02;TLOD=4.02	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:25,2:0.074:0:2:0.00:810,62:13:12	0/0:20,0:0.00:0:0:.:670,0:8:12
chr9	136447569	.	C	A	.	t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=5.42;TLOD=4.09	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:44,2:0.049:0:2:1.00:1479,66:21:23	0/0:19,0:0.00:0:0:.:653,0:15:4
chr9	136496492	.	TGTG	T	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=8.71;RPA=5,4;RU=GTG;STR;TLOD=5.20	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:63,2:0.033:1:1:.:2042,61:45:18	0/0:46,1:0.023:1:0:.:1486,31:27:19
chr9	136744809	.	G	C	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.71;TLOD=4.90	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:14,3:0.133:2:1:0.667:463,94:8:6	0/0:11,0:0.00:0:0:.:375,0:8:3
chr9	136865705	.	G	C	.	germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=10.74	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,4:0.750:1:3:0.250:36,140:0:1	0/0:4,0:0.00:0:0:.:141,0:0:4
chr9	137215785	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=3;MAX_ED=.;MIN_ED=.;NLOD=25.43;TLOD=5.18	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:111,3:0.028:1:2:0.333:3358,97:79:32	0/0:86,0:0.00:0:0:.:2542,0:41:45
chr9	137243129	.	A	C	.	alt_allele_in_normal;germline_risk;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.13;TLOD=5.63	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:102,40:0.230:17:23:0.575:3031,204:44:58	0/0:79,27:0.287:15:12:0.444:2310,107:33:46
chr9	137245613	.	T	G	.	alt_allele_in_normal;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=12.59;TLOD=5.56	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:84,27:0.243:22:5:0.815:2616,140:39:45	0/0:76,12:0.138:10:2:0.833:2377,66:44:32
chr9	137435798	.	A	G	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=42.13;TLOD=5.43	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:166,4:0.021:3:1:0.250:5441,129:85:81	0/0:155,0:0.00:0:0:.:5146,0:73:82
chr9	138175664	.	G	A	.	alt_allele_in_normal;t_lod_fstar	ECNT=1;HCNT=6;MAX_ED=.;MIN_ED=.;NLOD=34.98;TLOD=6.14	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:177,4:0.027:1:3:0.250:5587,122:85:92	0/0:184,2:0.013:1:1:0.500:5738,58:92:92
chr10	47467	.	G	A	.	alt_allele_in_normal;t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=24.57;TLOD=4.11	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:250,5:0.022:1:4:0.200:7466,153:128:122	0/0:134,18:0.118:7:11:0.389:3877,584:63:71
chr10	47754	.	T	C	.	alt_allele_in_normal	ECNT=1;HCNT=14;MAX_ED=.;MIN_ED=.;NLOD=5.56;TLOD=14.65	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:173,8:0.046:4:4:0.500:5748,266:98:75	0/0:75,9:0.107:6:3:0.667:2458,300:41:34
chr10	84193	.	GCA	G	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.47;RPA=9,8;RU=CA;STR;TLOD=4.70	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:21,3:0.125:2:1:.:548,90:11:10	0/0:15,0:0.00:0:0:.:420,0:3:12
chr10	241871	rs3740303	A	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.41;TLOD=19.38	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:9,6:0.400:3:3:0.500:300,209:1:8	0/0:8,0:0.00:0:0:.:279,0:1:7
chr10	356552	.	A	G	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.92;TLOD=4.51	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:37,2:0.049:1:1:0.500:1236,64:18:19	0/0:22,0:0.00:0:0:.:732,0:11:11
chr10	3129706	.	G	A	.	alt_allele_in_normal	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=5.53;TLOD=79.90	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:37,27:0.422:15:12:0.556:1015,860:22:15	0/0:39,2:0.049:0:2:0.00:1080,58:27:12
chr10	4972686	.	A	G	.	alt_allele_in_normal	ECNT=1;HCNT=16;MAX_ED=.;MIN_ED=.;NLOD=14.93;TLOD=45.14	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:111,17:0.142:8:9:0.529:3434,583:44:67	0/0:90,3:0.034:1:2:0.667:2765,101:46:44
chr10	4990047	.	A	AG	.	alt_allele_in_normal	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=2.24;RPA=1,2;RU=G;STR;TLOD=27.91	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:11,14:0.600:8:6:.:358,427:3:8	0/0:33,6:0.139:2:4:.:1050,196:13:20
chr10	4995580	.	C	A	.	alt_allele_in_normal	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=7.56;TLOD=12.47	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:32,6:0.158:6:0:0.00:1095,188:17:15	0/0:46,3:0.061:1:2:0.667:1565,98:28:18
chr10	4995721	.	A	G	.	alt_allele_in_normal	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.51;TLOD=10.68	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:10,5:0.333:2:3:0.600:314,137:5:5	0/0:15,1:0.063:1:0:0.00:491,29:11:4
chr10	4998445	rs2518044	C	T	.	clustered_events;germline_risk	DB;ECNT=2;HCNT=2;MAX_ED=35;MIN_ED=35;NLOD=1.81;TLOD=16.27	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:5,5:0.500:4:1:0.200:173,169:4:1	0/0:6,0:0.00:0:0:.:217,0:2:4
chr10	4998480	rs2854490	A	C	.	clustered_events;germline_risk	DB;ECNT=2;HCNT=2;MAX_ED=35;MIN_ED=35;NLOD=3.01;TLOD=26.59	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:7,8:0.533:3:5:0.625:218,273:3:4	0/0:10,0:0.00:0:0:.:328,0:4:6
chr10	5003531	.	T	G	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=8.43;TLOD=4.03	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:23,2:0.080:1:1:0.500:788,71:10:13	0/0:28,0:0.00:0:0:.:949,0:12:16
chr10	5747992	.	A	G	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=15.05;TLOD=4.05	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:76,2:0.030:2:0:0.00:2482,70:36:40	0/0:57,0:0.00:0:0:.:1852,0:31:26
chr10	5762492	.	A	G	.	PASS	ECNT=1;HCNT=5;MAX_ED=.;MIN_ED=.;NLOD=2.71;TLOD=28.95	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:5,8:0.615:5:3:0.375:163,289:3:2	0/0:9,0:0.00:0:0:.:305,0:7:2
chr10	6293634	rs7088356	C	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=25.55	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:5,8:0.615:4:4:0.500:169,255:2:3	0/0:7,0:0.00:0:0:.:231,0:3:4
chr10	7566376	.	T	G	.	alt_allele_in_normal;germline_risk;t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=0.671;TLOD=4.51	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:62,15:0.186:6:9:0.400:1629,105:28:34	0/0:30,10:0.278:5:5:0.500:780,32:17:13
chr10	7616926	rs11812212	G	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=14.55	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,4:0.667:2:2:0.500:74,143:1:1	0/0:4,0:0.00:0:0:.:147,0:1:3
chr10	7778741	.	AAAC	A	.	str_contraction	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=9.90;RPA=5,4;RU=AAC;STR;TLOD=8.31	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:58,3:0.049:2:1:.:1962,102:31:27	0/0:47,1:0.021:1:0:.:1545,35:26:21
chr10	8161641	rs1999976	C	A	.	alt_allele_in_normal;clustered_events;germline_risk	DB;ECNT=2;HCNT=2;MAX_ED=81;MIN_ED=81;NLOD=2.94;TLOD=28.75	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:17,11:0.385:5:6:0.545:579,344:10:7	0/0:26,1:0.043:0:1:1.00:858,35:10:16
chr10	8161722	rs500399	T	A	.	alt_allele_in_normal;clustered_events;germline_risk	DB;ECNT=2;HCNT=2;MAX_ED=81;MIN_ED=81;NLOD=4.55;TLOD=84.20	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:21,27:0.565:13:14:0.481:664,888:12:9	0/0:27,1:0.037:1:0:1.00:865,32:11:16
chr10	11005255	.	GGAGA	G	.	germline_risk;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.41;RPA=19,17;RU=GA;STR;TLOD=5.17	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:12,10:0.313:3:5:.:69,270:2:0	0/0:10,3:0.214:0:0:.:36,0:0:1
chr10	12167937	.	GT	G	.	germline_risk;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.18;RPA=8,7;RU=T;STR;TLOD=4.27	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:9,3:0.250:3:0:.:310,105:5:4	0/0:4,0:0.00:0:0:.:133,0:3:1
chr10	12235130	.	TTTTG	T	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.15;RPA=4,3;RU=TTTG;STR;TLOD=4.91	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:89,2:0.024:1:1:.:3059,68:57:32	0/0:26,0:0.00:0:0:.:891,0:18:8
chr10	13157654	.	T	TG	.	clustered_events;homologous_mapping_event	ECNT=4;HCNT=1;MAX_ED=22;MIN_ED=12;NLOD=2.44;TLOD=32.18	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:10,9:0.474:3:6:.:0|1:13157654_T_TG:335,241:4:6	0/0:8,0:0.00:0:0:.:0|1:13157654_T_TG:255,0:3:5
chr10	13157666	.	T	TG	.	clustered_events;homologous_mapping_event	ECNT=4;HCNT=1;MAX_ED=22;MIN_ED=12;NLOD=2.44;TLOD=26.44	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:10,7:0.412:3:4:.:0|1:13157654_T_TG:335,229:4:6	0/0:8,0:0.00:0:0:.:0|1:13157654_T_TG:255,0:3:5
chr10	13157671	.	T	G	.	clustered_events;homologous_mapping_event	ECNT=4;HCNT=1;MAX_ED=22;MIN_ED=12;NLOD=2.44;TLOD=26.44	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:10,7:0.412:3:4:0.429:0|1:13157654_T_TG:337,234:4:6	0/0:8,0:0.00:0:0:.:0|1:13157654_T_TG:263,0:3:5
chr10	13157676	.	T	G	.	clustered_events;homologous_mapping_event	ECNT=4;HCNT=1;MAX_ED=22;MIN_ED=12;NLOD=2.40;TLOD=22.59	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:8,6:0.400:2:4:0.333:0|1:13157654_T_TG:271,207:3:5	0/0:7,0:0.00:0:0:.:0|1:13157654_T_TG:228,0:3:4
chr10	13180489	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=20.46;TLOD=4.06	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:119,3:0.025:1:2:0.333:3399,95:55:64	0/0:68,0:0.00:0:0:.:1952,0:29:39
chr10	13188837	rs6602641	A	G	.	alt_allele_in_normal	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=6.98;TLOD=218.94	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:81,89:0.523:47:42:0.472:2640,2584:41:40	0/0:85,6:0.060:4:2:0.333:2783,187:45:40
chr10	15135192	.	TTTG	T	.	alt_allele_in_normal;str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.75;RPA=10,9;RU=TTG;STR;TLOD=4.60	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:45,3:0.065:2:1:.:1462,101:22:23	0/0:28,1:0.034:0:1:.:907,30:11:17
chr10	17071564	rs1801225	C	T	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.88;TLOD=75.27	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:43,29:0.400:13:16:0.552:1285,910:18:25	0/0:42,2:0.049:1:1:0.500:1243,65:17:25
chr10	17115403	rs45498199	G	A	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.939;TLOD=10.57	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:16,4:0.222:2:2:0.500:549,128:11:5	0/0:16,1:0.063:0:1:0.00:546,34:10:6
chr10	17161935	rs7912093	A	T	.	germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=14.90	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,5:0.556:1:4:0.800:128,152:3:1	0/0:5,0:0.00:0:0:.:158,0:1:4
chr10	17856221	.	C	T	.	germline_risk	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=15.97	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:5,5:0.500:2:3:0.600:176,167:4:1	0/0:6,0:0.00:0:0:.:216,0:5:1
chr10	17878094	.	G	A	.	germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=14.41	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,5:0.714:4:1:0.800:68,148:0:2	0/0:4,0:0.00:0:0:.:137,0:3:1
chr10	17965677	rs691513	C	A	.	PASS	DB;ECNT=1;HCNT=8;MAX_ED=.;MIN_ED=.;NLOD=4.51;TLOD=40.95	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:14,14:0.500:7:7:0.500:482,427:5:9	0/0:16,0:0.00:0:0:.:548,0:7:9
chr10	18000528	rs2497762	C	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=8.45	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,3:0.429:2:1:0.333:136,91:2:2	0/0:4,0:0.00:0:0:.:138,0:3:1
chr10	18042551	rs16916794	A	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=13.02	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,4:0.800:2:2:0.500:33,122:1:0	0/0:5,0:0.00:0:0:.:165,0:1:4
chr10	18668575	.	T	C	.	t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=10.23;TLOD=4.36	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:71,1:0.029:1:0:1.00:2259,21:38:33	0/0:34,0:0.00:0:0:.:1114,0:14:20
chr10	18940677	rs7907800	C	T	.	clustered_events;germline_risk;homologous_mapping_event	DB;ECNT=3;HCNT=4;MAX_ED=39;MIN_ED=32;NLOD=4.21;TLOD=41.37	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:12,14:0.520:10:4:0.286:383,464:1:11	0/0:14,0:0.00:0:0:.:439,0:7:7
chr10	18940709	rs7906865	G	A	.	clustered_events;germline_risk;homologous_mapping_event	DB;ECNT=3;HCNT=4;MAX_ED=39;MIN_ED=32;NLOD=2.71;TLOD=33.29	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:14,10:0.391:9:1:0.900:0|1:18940709_G_A:416,333:3:11	0/0:8,0:0.00:0:0:.:0|1:18940709_G_A:253,0:4:4
chr10	18940716	.	C	G	.	clustered_events;germline_risk;homologous_mapping_event	ECNT=3;HCNT=4;MAX_ED=39;MIN_ED=32;NLOD=2.11;TLOD=33.29	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:14,9:0.391:8:1:0.111:0|1:18940709_G_A:498,327:3:11	0/0:8,0:0.00:0:0:.:0|1:18940709_G_A:275,0:4:4
chr10	20002027	rs1409344	T	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=31.56	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:7,10:0.588:2:8:0.200:234,318:2:5	0/0:6,0:0.00:0:0:.:193,0:4:2
chr10	20787378	rs2296607	C	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.01;TLOD=11.19	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:8,4:0.333:2:2:0.500:284,126:5:3	0/0:10,0:0.00:0:0:.:362,0:6:4
chr10	21030071	rs640729	G	A	.	clustered_events;germline_risk	DB;ECNT=2;HCNT=4;MAX_ED=10;MIN_ED=10;NLOD=3.31;TLOD=43.43	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:17,12:0.429:7:5:0.583:0|1:21030071_G_A:554,395:8:9	0/0:11,0:0.00:0:0:.:0|1:21030071_G_A:365,0:7:4
chr10	21030081	rs640750	A	C	.	clustered_events;germline_risk	DB;ECNT=2;HCNT=4;MAX_ED=10;MIN_ED=10;NLOD=3.31;TLOD=44.40	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:16,12:0.444:6:6:0.500:0|1:21030071_G_A:512,413:9:7	0/0:11,0:0.00:0:0:.:0|1:21030071_G_A:363,0:6:5
chr10	21030776	rs561415	G	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.76;TLOD=10.83	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:13,5:0.267:3:2:0.600:465,154:4:9	0/0:6,0:0.00:0:0:.:174,0:2:4
chr10	21920898	.	A	C	.	alt_allele_in_normal;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.96;TLOD=4.75	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:47,21:0.273:13:8:0.381:1258,135:25:22	0/0:35,7:0.189:4:3:0.429:916,25:19:16
chr10	22955988	rs11013203	C	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.41;TLOD=21.44	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:6,7:0.538:3:4:0.571:211,220:5:1	0/0:8,0:0.00:0:0:.:277,0:3:5
chr10	22968586	rs12358422	A	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=10.65	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,3:0.750:0:3:1.00:31,102:1:0	0/0:6,0:0.00:0:0:.:185,0:4:2
chr10	24942586	rs10828731	C	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=6.42	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,2:0.667:1:1:0.500:29,63:0:1	0/0:4,0:0.00:0:0:.:111,0:3:1
chr10	26566990	.	C	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.42;TLOD=4.36	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:40,4:0.071:0:4:1.00:1204,137:18:22	0/0:18,0:0.00:0:0:.:484,0:6:12
chr10	26705221	rs1780192	A	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.31;TLOD=33.34	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:12,10:0.455:6:4:0.400:373,352:5:7	0/0:11,0:0.00:0:0:.:349,0:6:5
chr10	26705416	rs1748356	G	A	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.839;TLOD=39.97	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:8,13:0.619:4:9:0.308:283,396:5:3	0/0:15,1:0.063:0:1:0.00:520,35:5:10
chr10	26742463	.	AGATT	A	.	PASS	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.91;TLOD=26.74	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:9,7:0.438:4:3:.:278,220:6:3	0/0:13,0:0.00:0:0:.:392,0:6:7
chr10	26934643	.	C	CA	.	germline_risk;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.906;RPA=6,7;RU=A;STR;TLOD=5.00	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:5,3:0.375:0:3:.:153,100:4:1	0/0:3,0:0.00:0:0:.:107,0:3:0
chr10	28899127	rs61838421	T	C	.	germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=13.29	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:7,6:0.417:4:2:0.667:218,177:4:3	0/0:11,0:0.00:0:0:.:354,0:4:7
chr10	29292122	.	G	A	.	PASS	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.70;TLOD=6.63	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:19,3:0.136:1:2:0.333:635,90:9:10	0/0:22,0:0.00:0:0:.:730,0:12:10
chr10	29292380	rs1751955	C	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=7.93	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:5,3:0.375:2:1:0.333:171,88:2:3	0/0:6,0:0.00:0:0:.:191,0:3:3
chr10	29494979	.	A	G	.	PASS	ECNT=1;HCNT=16;MAX_ED=.;MIN_ED=.;NLOD=33.44;TLOD=22.97	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:235,17:0.060:7:10:0.588:7669,517:121:114	0/0:129,1:8.197e-03:1:0:0.00:4232,28:54:75
chr10	30027571	.	ACTG	A	.	str_contraction	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=14.65;RPA=8,7;RU=CTG;STR;TLOD=19.71	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:97,8:0.079:4:4:.:3008,244:53:44	0/0:60,1:0.017:0:1:.:1851,33:31:29
chr10	30358602	rs11597060	G	A	.	germline_risk;t_lod_fstar	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.40;TLOD=5.48	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:7,2:0.222:2:0:1.00:198,66:4:3	0/0:8,0:0.00:0:0:.:214,0:3:5
chr10	30369634	.	G	A	.	germline_risk;t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=4.88	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:16,2:0.118:1:1:0.500:549,66:13:3	0/0:4,0:0.00:0:0:.:135,0:2:2
chr10	30626689	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=2;HCNT=8;MAX_ED=19;MIN_ED=19;NLOD=4.35;TLOD=8.56	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:30,4:0.118:1:3:0.250:1026,128:15:15	0/0:30,1:0.033:0:1:0.00:1040,33:16:14
chr10	30626708	.	A	G	.	alt_allele_in_normal;clustered_events	ECNT=2;HCNT=8;MAX_ED=19;MIN_ED=19;NLOD=6.41;TLOD=50.83	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:45,19:0.290:8:11:0.579:1353,649:23:22	0/0:36,2:0.054:1:1:0.500:1033,71:18:18
chr10	30629620	.	G	C	.	alt_allele_in_normal;t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=5.36;TLOD=4.16	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:49,2:0.048:1:1:0.500:1483,67:27:22	0/0:32,1:0.032:0:1:0.00:918,35:18:14
chr10	30697435	rs7078530	G	A	.	germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=3.01;TLOD=39.69	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:16,13:0.464:7:6:0.538:560,422:8:8	0/0:10,0:0.00:0:0:.:348,0:4:6
chr10	32188972	rs11598041	A	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=30.11	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:7,9:0.563:5:4:0.444:224,306:3:4	0/0:7,0:0.00:0:0:.:234,0:4:3
chr10	32492102	rs2990982	C	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.80;TLOD=7.69	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:9,3:0.250:2:1:0.333:245,92:6:3	0/0:6,0:0.00:0:0:.:170,0:3:3
chr10	32930181	rs11009151	A	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=10.73	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:0,3:1.00:3:0:0.00:0,93:0:0	0/0:5,0:0.00:0:0:.:173,0:1:4
chr10	36522774	.	GCA	G	.	clustered_events;t_lod_fstar	ECNT=2;HCNT=1;MAX_ED=6;MIN_ED=6;NLOD=9.03;TLOD=4.75	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:46,4:0.077:4:0:.:0|1:36522774_GCA_G:1571,131:20:26	0/0:29,0:0.00:0:0:.:0|1:36522774_GCA_G:1013,0:16:13
chr10	36522780	.	A	ATG	.	clustered_events;t_lod_fstar	ECNT=2;HCNT=1;MAX_ED=6;MIN_ED=6;NLOD=9.33;TLOD=4.72	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:49,4:0.075:4:0:.:0|1:36522774_GCA_G:1577,127:22:27	0/0:30,0:0.00:0:0:.:0|1:36522774_GCA_G:976,0:16:14
chr10	38054332	rs2472160	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.21;TLOD=40.08	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:12,13:0.520:6:7:0.462:435,414:3:9	0/0:14,0:0.00:0:0:.:493,0:6:8
chr10	38392035	.	G	T	.	alt_allele_in_normal	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.35;TLOD=7.24	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:7,4:0.333:3:1:0.750:241,127:3:4	0/0:34,1:0.032:0:1:0.00:1131,34:13:21
chr10	38457790	.	A	C	.	germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=18.63	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:6,6:0.500:4:2:0.333:202,199:0:6	0/0:36,0:0.00:0:0:.:1222,0:15:21
chr10	38604509	.	G	A	.	PASS	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.41;TLOD=8.15	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:8,3:0.300:2:1:0.667:255,94:6:2	0/0:13,0:0.00:0:0:.:388,0:6:7
chr10	38617272	.	T	C	.	clustered_events;t_lod_fstar	ECNT=2;HCNT=2;MAX_ED=4;MIN_ED=4;NLOD=5.42;TLOD=5.90	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:30,2:0.074:2:0:1.00:0|1:38617272_T_C:978,70:15:15	0/0:28,0:0.00:0:0:.:0|1:38617272_T_C:914,0:7:21
chr10	38617276	.	C	T	.	clustered_events;t_lod_fstar	ECNT=2;HCNT=2;MAX_ED=4;MIN_ED=4;NLOD=5.42;TLOD=5.90	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:31,2:0.074:2:0:0.00:0|1:38617272_T_C:1087,66:16:15	0/0:28,0:0.00:0:0:.:0|1:38617272_T_C:978,0:7:21
chr10	38641212	rs9663096	A	G	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=3;MAX_ED=.;MIN_ED=.;NLOD=2.04;TLOD=49.31	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:22,18:0.436:13:5:0.278:707,607:12:10	0/0:19,1:0.050:0:1:1.00:620,35:11:8
chr10	38646302	.	A	T	.	clustered_events;multi_event_alt_allele_in_normal	ECNT=2;HCNT=2;MAX_ED=14;MIN_ED=14;NLOD=8.44;TLOD=20.46	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:42,6:0.143:5:1:0.167:0|1:38646302_A_T:1433,194:25:17	0/0:55,1:0.019:0:1:1.00:0|1:38646302_A_T:1852,31:25:30
chr10	38646316	.	CAAT	C	.	alt_allele_in_normal;clustered_events;germline_risk	ECNT=2;HCNT=2;MAX_ED=14;MIN_ED=14;NLOD=0.564;TLOD=19.21	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:41,6:0.128:4:2:.:0|1:38646302_A_T:1402,206:22:19	0/0:56,3:0.050:2:1:.:0|1:38646302_A_T:1923,98:24:32
chr10	38671907	rs115144286	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.51;TLOD=36.10	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:9,14:0.571:4:10:0.286:277,456:6:3	0/0:18,0:0.00:0:0:.:559,0:13:5
chr10	43482639	rs3750890	A	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=19.45	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:6,6:0.500:1:5:0.833:194,202:5:1	0/0:5,0:0.00:0:0:.:162,0:4:1
chr10	44378805	rs266085	C	T	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.05;TLOD=54.78	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:24,19:0.442:10:9:0.474:821,582:14:10	0/0:22,1:0.043:0:1:1.00:747,34:13:9
chr10	44932100	rs12414447	G	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=28.87	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:9,9:0.500:3:6:0.333:301,300:4:5	0/0:4,0:0.00:0:0:.:137,0:2:2
chr10	45753340	.	C	T	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.12;TLOD=5.54	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:16,3:0.158:1:2:0.667:562,95:9:7	0/0:17,0:0.00:0:0:.:622,0:11:6
chr10	45847201	.	T	C	.	alt_allele_in_normal	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=7.09;TLOD=7.10	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:203,8:0.044:4:4:0.500:6118,284:113:90	0/0:156,13:0.082:5:8:0.385:4801,455:75:81
chr10	45915982	.	GTCTC	G	.	PASS	ECNT=1;HCNT=3;MAX_ED=.;MIN_ED=.;NLOD=2.29;RPA=8,6;RU=TC;STR;TLOD=6.38	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:14,2:0.100:0:2:.:130,64:3:1	0/0:8,0:0.00:0:0:.:36,0:0:1
chr10	46009308	.	A	T	.	PASS	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.01;TLOD=15.19	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:6,5:0.455:3:2:0.400:201,161:2:4	0/0:10,0:0.00:0:0:.:343,0:4:6
chr10	46340305	.	T	C	.	germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=14.45	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:6,7:0.538:3:4:0.429:203,217:3:3	0/0:47,1:0.021:1:0:1.00:1589,36:21:26
chr10	46358172	.	T	C	.	alt_allele_in_normal	ECNT=2;HCNT=1;MAX_ED=1;MIN_ED=1;NLOD=39.68;TLOD=30.52	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:357,13:0.045:8:5:0.615:0|1:46358172_T_C:11437,370:180:177	0/0:192,8:0.041:4:4:0.500:0|1:46358172_T_C:6311,193:110:82
chr10	46358173	.	G	A	.	alt_allele_in_normal	ECNT=2;HCNT=1;MAX_ED=1;MIN_ED=1;NLOD=40.58;TLOD=30.52	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:354,15:0.045:9:6:0.600:0|1:46358172_T_C:12076,369:179:175	0/0:196,8:0.041:4:4:0.500:0|1:46358172_T_C:6859,182:112:84
chr10	46584599	.	G	C	.	PASS	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.41;TLOD=10.66	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:18,5:0.217:4:1:0.800:607,153:12:6	0/0:13,0:0.00:0:0:.:453,0:5:8
chr10	47569594	.	G	A	.	clustered_events;homologous_mapping_event	ECNT=3;HCNT=4;MAX_ED=47;MIN_ED=4;NLOD=4.81;TLOD=32.18	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:10,8:0.409:4:4:0.500:0|1:47569594_G_A:349,232:5:5	0/0:16,0:0.00:0:0:.:0|1:47569594_G_A:577,0:9:7
chr10	47569598	.	CT	C	.	clustered_events;homologous_mapping_event	ECNT=3;HCNT=4;MAX_ED=47;MIN_ED=4;NLOD=4.81;RPA=7,6;RU=T;STR;TLOD=31.75	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:15,9:0.375:5:4:.:0|1:47569594_G_A:497,307:9:6	0/0:17,0:0.00:0:0:.:0|1:47569594_G_A:587,0:10:7
chr10	47569641	.	C	T	.	clustered_events;multi_event_alt_allele_in_normal	ECNT=3;HCNT=4;MAX_ED=47;MIN_ED=4;NLOD=8.86;TLOD=44.31	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:52,21:0.292:11:10:0.476:1782,688:30:22	0/0:43,1:0.023:1:0:0.00:1464,33:24:19
chr10	48172895	.	G	A	.	alt_allele_in_normal;germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=17.13	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,6:0.857:5:1:0.833:32,193:0:1	0/0:45,2:0.044:2:0:1.00:1582,66:24:21
chr10	48913170	rs7923621	T	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=9.99	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,3:0.750:2:1:0.667:31,96:0:1	0/0:5,0:0.00:0:0:.:154,0:3:2
chr10	49472477	.	CAG	C	.	alt_allele_in_normal;str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.69;RPA=6,5;RU=AG;STR;TLOD=5.30	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:88,3:0.033:2:1:.:3142,108:54:34	0/0:58,4:0.066:2:2:.:2106,142:25:33
chr10	49649408	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.01;TLOD=4.10	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:34,2:0.056:0:2:0.00:969,65:18:16	0/0:11,0:0.00:0:0:.:314,0:6:5
chr10	49649789	rs1917813	T	C	.	germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=31.81	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:6,9:0.600:3:6:0.333:198,319:1:5	0/0:4,0:0.00:0:0:.:135,0:2:2
chr10	50025782	rs11003346	C	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=9.77	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,3:0.600:3:0:0.00:68,98:1:1	0/0:4,0:0.00:0:0:.:131,0:2:2
chr10	50061576	.	C	T	.	alt_allele_in_normal	ECNT=1;HCNT=6;MAX_ED=.;MIN_ED=.;NLOD=15.10;TLOD=145.31	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:375,88:0.185:46:42:0.477:11641,2420:178:197	0/0:287,19:0.062:6:13:0.684:8853,532:152:135
chr10	50083915	.	ATT	A	.	germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.578;RPA=10,8;RU=T;STR;TLOD=11.68	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:0,4:1.00:2:2:.:0,136:0:0	0/0:3,0:0.00:0:0:.:101,0:1:2
chr10	50094026	.	G	A	.	alt_allele_in_normal;germline_risk	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=0.637;TLOD=19.88	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:22,9:0.290:4:5:0.444:721,300:10:12	0/0:17,1:0.056:1:0:1.00:570,34:7:10
chr10	50130238	.	T	C	.	germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=16.88	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:5,5:0.500:2:3:0.400:154,185:2:3	0/0:5,0:0.00:0:0:.:157,0:1:4
chr10	50202945	.	C	T	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=10.53;TLOD=4.20	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:35,2:0.056:1:1:0.500:1181,66:17:18	0/0:36,0:0.00:0:0:.:1235,0:19:17
chr10	50212787	.	C	A	.	germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=21.83	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:0,6:1.00:2:4:0.667:0,190:0:0	0/0:5,0:0.00:0:0:.:171,0:1:4
chr10	50343366	rs2060561	A	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=9.62	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:3,3:0.500:0:3:1.00:95,100:2:1	0/0:5,0:0.00:0:0:.:155,0:3:2
chr10	50743043	.	CGT	C	.	alt_allele_in_normal;str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.01;RPA=8,7;RU=GT;STR;TLOD=4.36	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:64,4:0.027:3:1:.:1490,105:32:21	0/0:31,2:0.031:2:0:.:848,57:14:16
chr10	53903499	.	C	A	.	germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=15.59	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:6,5:0.455:2:3:0.600:215,165:3:3	0/0:6,0:0.00:0:0:.:212,0:6:0
chr10	54214129	rs10763086	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.01;TLOD=11.82	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:5,4:0.444:1:3:0.250:159,126:4:1	0/0:10,0:0.00:0:0:.:344,0:6:4
chr10	54237001	rs721825	C	T	.	PASS	DB;ECNT=1;HCNT=6;MAX_ED=.;MIN_ED=.;NLOD=7.82;TLOD=41.78	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:13,13:0.500:7:6:0.462:463,436:6:7	0/0:26,0:0.00:0:0:.:902,0:12:14
chr10	58361654	rs11593650	A	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=29.73	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:7,9:0.563:7:2:0.222:214,302:4:3	0/0:5,0:0.00:0:0:.:165,0:1:4
chr10	59245179	.	A	G	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=12.04;TLOD=4.36	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:66,3:0.034:3:0:0.00:2211,106:37:29	0/0:47,0:0.00:0:0:.:1601,0:25:22
chr10	59832514	rs116915594	C	G	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.35;TLOD=123.33	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:30,43:0.583:23:20:0.465:1065,1532:18:12	0/0:31,1:0.038:1:0:0.00:1099,30:11:20
chr10	60685064	rs1837949	T	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.82;TLOD=51.63	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:17,15:0.484:6:9:0.400:552,538:10:7	0/0:18,0:0.00:0:0:.:596,0:10:8
chr10	60874863	rs2279942	C	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.01;TLOD=17.31	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:13,6:0.316:3:3:0.500:447,196:7:6	0/0:10,0:0.00:0:0:.:350,0:4:6
chr10	61760940	rs1992625	T	C	.	alt_allele_in_normal	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.31;TLOD=106.01	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:34,33:0.500:20:13:0.606:1113,1171:14:20	0/0:47,3:0.064:2:1:0.667:1512,104:24:23
chr10	62069780	rs76296217	C	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.51;TLOD=67.06	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:31,26:0.451:15:11:0.423:1067,808:14:17	0/0:18,0:0.00:0:0:.:609,0:7:11
chr10	62204894	rs41274060	C	T	.	PASS	DB;ECNT=1;HCNT=6;MAX_ED=.;MIN_ED=.;NLOD=6.02;TLOD=50.60	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:16,16:0.500:13:3:0.188:555,526:5:11	0/0:20,0:0.00:0:0:.:703,0:12:8
chr10	62376869	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=20.72;TLOD=4.84	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:169,3:0.018:3:0:1.00:5478,99:74:95	0/0:73,0:0.00:0:0:.:2327,0:30:43
chr10	63598071	.	T	C	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=10.53;TLOD=4.35	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:64,2:0.033:1:1:0.500:2171,72:25:39	0/0:39,0:0.00:0:0:.:1318,0:25:14
chr10	68199588	.	GCTGGGA	G	.	alt_allele_in_normal;germline_risk	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=2.10;TLOD=83.68	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:32,24:0.423:15:9:.:1100,831:18:14	0/0:23,1:0.045:1:0:.:790,35:10:13
chr10	68296758	rs3740589	C	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.01;TLOD=41.52	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:9,13:0.591:5:8:0.615:306,418:2:7	0/0:10,0:0.00:0:0:.:346,0:6:4
chr10	68345671	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.41;TLOD=4.64	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:20,2:0.091:0:2:0.00:562,66:11:9	0/0:8,0:0.00:0:0:.:233,0:4:4
chr10	68644622	rs966578	T	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.71;TLOD=23.02	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:7,7:0.500:6:1:0.857:215,239:5:2	0/0:9,0:0.00:0:0:.:286,0:5:4
chr10	68674752	rs12783447	C	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=6.75	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,2:0.500:0:2:1.00:71,70:2:0	0/0:5,0:0.00:0:0:.:171,0:3:2
chr10	68749117	rs34521154	T	C	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.33;TLOD=84.20	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:32,31:0.481:21:10:0.677:1088,1056:19:13	0/0:28,1:0.038:1:0:1.00:954,30:11:17
chr10	69250514	.	GCT	G	.	alt_allele_in_normal;str_contraction	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=5.66;RPA=7,6;RU=CT;STR;TLOD=9.55	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:211,6:0.031:1:5:.:6432,184:115:96	0/0:96,7:0.073:3:4:.:2910,209:53:43
chr10	69414880	.	TAC	T	.	alt_allele_in_normal;germline_risk;str_contraction	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.24;RPA=7,6;RU=AC;STR;TLOD=15.84	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:77,9:0.101:4:5:.:2328,278:34:43	0/0:46,4:0.082:1:3:.:1382,124:12:34
chr10	70597957	rs1889490	C	T	.	clustered_events;germline_risk	DB;ECNT=2;HCNT=1;MAX_ED=7;MIN_ED=7;NLOD=2.11;TLOD=11.01	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:6,3:0.333:3:0:0.00:0|1:70597957_C_T:205,93:4:2	0/0:7,0:0.00:0:0:.:0|1:70597957_C_T:241,0:4:3
chr10	70597964	rs6480459	G	A	.	clustered_events;germline_risk	DB;ECNT=2;HCNT=1;MAX_ED=7;MIN_ED=7;NLOD=2.41;TLOD=14.05	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:6,4:0.400:3:1:0.750:0|1:70597957_C_T:219,122:4:2	0/0:8,0:0.00:0:0:.:0|1:70597957_C_T:290,0:5:3
chr10	70757769	rs10823612	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=17.79	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:12,6:0.333:2:4:0.333:414,199:4:8	0/0:7,0:0.00:0:0:.:245,0:4:3
chr10	70875386	.	ATT	A	.	alt_allele_in_normal;germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.77;RPA=7,5;RU=T;STR;TLOD=48.60	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:19,16:0.469:13:3:.:587,508:13:6	0/0:18,1:0.053:1:0:.:557,32:10:8
chr10	71362711	rs780680	G	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.41;TLOD=39.75	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:6,12:0.667:7:5:0.583:197,390:4:2	0/0:8,0:0.00:0:0:.:274,0:5:3
chr10	71777601	rs41281328	G	A	.	germline_risk	DB;ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=19.48	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:0,5:1.00:2:3:0.400:0,171:0:0	0/0:7,0:0.00:0:0:.:240,0:5:2
chr10	72942691	.	G	T	.	germline_risk;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=4.71	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:11,3:0.167:1:2:0.333:383,94:6:5	0/0:6,0:0.00:0:0:.:204,0:1:5
chr10	73008226	.	T	C	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=10.23;TLOD=4.13	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:77,3:0.029:1:2:0.333:2525,101:29:48	0/0:41,0:0.00:0:0:.:1392,0:24:17
chr10	73911404	rs1916341	G	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=6.52	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,2:0.667:0:2:0.00:35,64:1:0	0/0:4,0:0.00:0:0:.:145,0:1:3
chr10	74130002	.	GA	G	.	alt_allele_in_normal;germline_risk	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=0.733;RPA=10,9;RU=A;STR;TLOD=15.55	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:18,20:0.365:8:10:.:582,625:9:9	0/0:19,3:0.077:2:1:.:628,109:7:12
chr10	74372404	rs1904067	T	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=10.22	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:5,4:0.444:1:3:0.250:161,110:2:3	0/0:7,0:0.00:0:0:.:226,0:4:3
chr10	74670112	rs10740443	T	C	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.84;TLOD=22.44	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:6,7:0.538:2:5:0.286:197,230:5:1	0/0:17,1:0.056:1:0:1.00:558,31:10:7
chr10	76945015	.	CAG	C	.	germline_risk;str_contraction	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=2.09;RPA=8,7;RU=AG;STR;TLOD=9.40	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:10,4:0.286:0:4:.:360,143:2:8	0/0:7,0:0.00:0:0:.:254,0:6:1
chr10	77183333	rs55976351	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.41;TLOD=22.42	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:7,7:0.500:4:3:0.571:242,233:0:7	0/0:8,0:0.00:0:0:.:288,0:3:5
chr10	77984328	.	A	G	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=7.82;TLOD=4.06	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:54,2:0.038:1:1:0.500:1784,68:22:32	0/0:27,0:0.00:0:0:.:886,0:12:15
chr10	78022289	rs12764690	C	T	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.68;TLOD=84.34	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:22,27:0.551:16:11:0.407:700,861:12:10	0/0:36,2:0.054:2:0:0.00:1118,65:18:18
chr10	79293803	rs1250559	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=22.60	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:9,8:0.471:5:3:0.625:299,239:4:5	0/0:7,0:0.00:0:0:.:237,0:5:2
chr10	79311029	.	GCTC	G	.	alt_allele_in_normal;str_contraction	ECNT=1;HCNT=8;MAX_ED=.;MIN_ED=.;NLOD=16.83;RPA=5,4;RU=CTC;STR;TLOD=9.35	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:232,5:0.018:1:4:.:7232,170:97:135	0/0:99,3:0.031:0:3:.:3098,89:42:57
chr10	79611881	.	T	C	.	alt_allele_in_normal	ECNT=1;HCNT=8;MAX_ED=.;MIN_ED=.;NLOD=27.67;TLOD=24.89	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:245,17:0.075:7:10:0.412:7741,497:127:118	0/0:124,8:0.067:5:3:0.625:3919,220:71:53
chr10	79613426	rs4253524	G	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.61;TLOD=19.17	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:3,6:0.667:3:3:0.500:101,188:1:2	0/0:12,0:0.00:0:0:.:423,0:3:9
chr10	79892964	rs2758537	A	C	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.18;TLOD=102.78	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:34,32:0.484:12:20:0.625:1144,1131:23:11	0/0:35,2:0.057:2:0:0.00:1173,74:17:18
chr10	79938341	rs2819098	G	A	.	germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=3.31;TLOD=21.19	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:7,7:0.500:3:4:0.429:232,221:3:4	0/0:11,0:0.00:0:0:.:373,0:3:8
chr10	80024978	.	A	G	.	t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=2.36;TLOD=5.78	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:8,2:0.200:2:0:0.00:255,70:3:5	0/0:9,0:0.00:0:0:.:262,0:4:5
chr10	80032150	.	G	A	.	PASS	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.31;TLOD=10.26	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:18,5:0.217:2:3:0.400:620,161:11:7	0/0:11,0:0.00:0:0:.:389,0:9:2
chr10	80032349	.	G	A	.	clustered_events;germline_risk	ECNT=2;HCNT=1;MAX_ED=10;MIN_ED=10;NLOD=1.20;TLOD=10.24	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:12,3:0.200:1:2:0.333:0|1:80032349_G_A:419,98:9:3	0/0:9,0:0.00:0:0:.:0|1:80032349_G_A:310,0:3:6
chr10	80032359	.	A	T	.	clustered_events;germline_risk	ECNT=2;HCNT=1;MAX_ED=10;MIN_ED=10;NLOD=1.20;TLOD=10.15	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:13,3:0.188:1:2:0.667:0|1:80032349_G_A:407,97:10:3	0/0:8,0:0.00:0:0:.:0|1:80032349_G_A:249,0:2:6
chr10	80166012	.	A	ACACGCATGCGCGCGTGCG	.	t_lod_fstar	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=3.34;RPA=1,2;RU=CACGCATGCGCGCGTGCG;STR;TLOD=4.75	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:10,0:0.474:0:0:.:314,0:3:7	0/0:12,0:0.077:0:0:.:389,0:2:10
chr10	80170686	rs2819953	C	A	.	clustered_events;germline_risk	DB;ECNT=2;HCNT=2;MAX_ED=19;MIN_ED=19;NLOD=2.41;TLOD=33.52	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:7,10:0.588:2:8:0.800:235,338:2:5	0/0:8,0:0.00:0:0:.:271,0:5:3
chr10	80170705	rs2789689	T	C	.	clustered_events;germline_risk	DB;ECNT=2;HCNT=2;MAX_ED=19;MIN_ED=19;NLOD=2.71;TLOD=38.64	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:13,12:0.480:1:11:0.083:403,405:4:9	0/0:9,0:0.00:0:0:.:293,0:4:5
chr10	80280896	rs77828941	C	G	.	germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=3.91;TLOD=14.74	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:10,5:0.333:5:0:0.00:280,165:3:7	0/0:13,0:0.00:0:0:.:353,0:6:7
chr10	80289222	rs3862534	C	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.41;TLOD=37.15	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:16,12:0.429:6:6:0.500:503,397:6:10	0/0:8,0:0.00:0:0:.:269,0:6:2
chr10	80336212	rs1340383	T	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=30.84	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:15,10:0.417:7:3:0.700:464,339:9:6	0/0:7,0:0.00:0:0:.:225,0:4:3
chr10	80571681	rs45526031	C	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.51;TLOD=15.24	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:9,5:0.357:3:2:0.400:319,171:4:5	0/0:5,0:0.00:0:0:.:178,0:3:2
chr10	80609664	rs11816639	G	A	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.974;TLOD=49.15	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:22,17:0.436:7:10:0.412:749,528:10:12	0/0:26,2:0.071:1:1:0.500:898,65:11:15
chr10	84237752	rs74145777	C	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.31;TLOD=35.67	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:9,11:0.550:7:4:0.364:313,364:4:5	0/0:11,0:0.00:0:0:.:385,0:8:3
chr10	87387336	.	C	T	.	PASS	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.41;TLOD=11.50	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,4:0.800:4:0:0.00:36,139:0:1	0/0:9,0:0.00:0:0:.:325,0:6:3
chr10	88786298	rs10788613	C	T	.	germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=40.62	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:9,13:0.619:10:3:0.231:320,405:6:3	0/0:7,0:0.00:0:0:.:249,0:2:5
chr10	89332432	rs12255504	C	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=8.05	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:0,2:1.00:0:2:1.00:0,71:0:0	0/0:4,0:0.00:0:0:.:138,0:3:1
chr10	89743743	.	TA	T	.	PASS	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=3.31;RPA=3,2;RU=A;STR;TLOD=20.83	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:18,8:0.308:6:2:.:605,267:12:6	0/0:11,0:0.00:0:0:.:368,0:3:8
chr10	91055067	rs12413153	T	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.42;TLOD=28.06	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:10,9:0.474:3:6:0.333:340,297:5:5	0/0:18,0:0.00:0:0:.:609,0:6:12
chr10	91498257	.	C	T	.	germline_risk;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=4.60	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:21,2:0.087:2:0:0.00:705,66:16:5	0/0:5,0:0.00:0:0:.:173,0:3:2
chr10	91845648	rs1770466	A	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=11.48	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:7,4:0.364:1:3:0.750:229,127:6:1	0/0:4,0:0.00:0:0:.:129,0:1:3
chr10	91851419	.	A	ATATG	.	PASS	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.43;RPA=1,2;RU=TATG;STR;TLOD=56.28	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:9,14:0.609:8:6:.:286,459:7:2	0/0:8,0:0.00:0:0:.:267,0:6:2
chr10	92465540	rs2275218	A	G	.	germline_risk;t_lod_fstar	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.71;TLOD=5.91	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:10,2:0.167:0:2:1.00:310,73:4:6	0/0:9,0:0.00:0:0:.:276,0:4:5
chr10	93208048	.	TTC	T	.	PASS	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.61;TLOD=22.85	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:8,7:0.429:3:4:.:265,244:4:4	0/0:12,0:0.00:0:0:.:407,0:3:9
chr10	93576382	rs12220062	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.42;TLOD=22.27	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:5,7:0.583:2:5:0.286:176,231:2:3	0/0:18,0:0.00:0:0:.:611,0:12:6
chr10	93695011	.	TA	T	.	alt_allele_in_normal	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.77;RPA=8,7;RU=A;STR;TLOD=29.75	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:13,16:0.552:12:4:.:409,496:8:5	0/0:24,2:0.077:0:2:.:757,64:18:6
chr10	94358221	.	CCA	C	.	alt_allele_in_normal;str_contraction	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.72;RPA=9,8;RU=CA;STR;TLOD=11.97	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:73,9:0.111:5:4:.:2454,317:37:36	0/0:40,4:0.079:3:1:.:1378,142:22:18
chr10	94441858	rs10882455	A	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.21;TLOD=30.82	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:12,9:0.450:4:5:0.556:372,325:6:6	0/0:14,0:0.00:0:0:.:431,0:6:8
chr10	95237913	rs1049921	A	G	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.14;TLOD=35.61	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:16,15:0.464:3:12:0.800:524,441:6:10	0/0:17,1:0.059:1:0:0.00:554,25:9:8
chr10	95268656	rs3737015	A	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=29.46	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:11,10:0.476:5:5:0.500:348,310:5:6	0/0:6,0:0.00:0:0:.:199,0:4:2
chr10	95351122	rs6583995	C	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=42.34	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:9,14:0.591:5:9:0.643:314,459:7:2	0/0:4,0:0.00:0:0:.:136,0:4:0
chr10	95371157	rs3740509	T	C	.	germline_risk;t_lod_fstar	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=5.95	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,2:0.500:2:0:1.00:62,62:1:1	0/0:4,0:0.00:0:0:.:131,0:3:1
chr10	96378811	rs3827865	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.91;TLOD=14.79	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:6,5:0.455:3:2:0.600:212,157:1:5	0/0:13,0:0.00:0:0:.:441,0:8:5
chr10	96386199	.	G	A	.	alt_allele_in_normal;germline_risk;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.599;TLOD=4.27	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:60,19:0.203:7:12:0.368:1914,85:27:33	0/0:40,15:0.288:6:9:0.400:1359,30:24:16
chr10	96551433	rs10882816	G	T	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=2.14;TLOD=41.93	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:27,18:0.386:9:9:0.500:941,533:14:13	0/0:28,3:0.067:3:0:1.00:958,98:14:14
chr10	97021339	.	T	A	.	t_lod_fstar	ECNT=1;HCNT=6;MAX_ED=.;MIN_ED=.;NLOD=9.33;TLOD=4.30	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:70,2:0.031:0:2:0.00:2345,64:31:39	0/0:33,0:0.00:0:0:.:1103,0:18:15
chr10	97366764	.	GCTC	G	.	alt_allele_in_normal;str_contraction	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=3.27;RPA=7,6;RU=CTC;STR;TLOD=14.18	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:185,6:0.032:4:2:.:6119,206:113:72	0/0:85,5:0.059:2:3:.:2763,172:50:35
chr10	97577815	rs7094973	G	A	.	PASS	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.71;TLOD=14.55	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:9,6:0.385:2:4:0.333:232,192:5:4	0/0:10,0:0.00:0:0:.:293,0:3:7
chr10	97744873	rs10882993	G	T	.	germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=15.87	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:5,5:0.500:3:2:0.600:177,165:2:3	0/0:5,0:0.00:0:0:.:174,0:2:3
chr10	97749700	rs946778	T	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.71;TLOD=31.91	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:10,10:0.500:4:6:0.400:328,332:5:5	0/0:9,0:0.00:0:0:.:287,0:4:5
chr10	97750212	rs3750615	T	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.01;TLOD=23.07	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:7,7:0.500:4:3:0.571:203,239:3:4	0/0:10,0:0.00:0:0:.:307,0:6:4
chr10	97750574	rs10786372	A	G	.	germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=2.71;TLOD=22.62	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:7,7:0.500:4:3:0.429:224,235:4:3	0/0:9,0:0.00:0:0:.:295,0:2:7
chr10	99235954	.	GCT	G	.	germline_risk;str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.21;RPA=7,6;RU=CT;STR;TLOD=5.52	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,2:0.500:0:2:.:69,65:1:1	0/0:4,0:0.00:0:0:.:106,0:2:2
chr10	99884307	.	ACAGT	A	.	germline_risk;str_contraction	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.80;RPA=2,1;RU=CAGT;STR;TLOD=15.08	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:6,4:0.400:1:3:.:188,127:2:4	0/0:6,0:0.00:0:0:.:188,0:2:4
chr10	100354652	.	A	G	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=7.52;TLOD=4.09	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:47,2:0.043:2:0:0.00:1531,67:27:20	0/0:26,0:0.00:0:0:.:864,0:12:14
chr10	100980514	rs67692077	T	C	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.65;TLOD=24.29	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:20,9:0.310:3:6:0.333:660,278:12:8	0/0:27,1:0.036:0:1:0.00:898,33:16:11
chr10	101004290	rs807029	C	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=18.87	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:3,6:0.667:4:2:0.333:105,185:1:2	0/0:6,0:0.00:0:0:.:211,0:3:3
chr10	102159242	.	TAGC	T	.	alt_allele_in_normal;str_contraction;t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=19.00;RPA=5,4;RU=AGC;STR;TLOD=4.34	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:165,2:0.013:2:0:.:5112,64:74:91	0/0:93,2:0.022:1:1:.:2872,61:38:55
chr10	102397154	rs12772374	A	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.91;TLOD=30.42	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,9:0.692:3:6:0.667:130,300:3:1	0/0:13,0:0.00:0:0:.:423,0:8:5
chr10	102619221	.	C	T	.	PASS	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.01;TLOD=23.34	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:7,9:0.563:8:1:0.111:221,238:3:4	0/0:10,0:0.00:0:0:.:334,0:3:7
chr10	102705617	rs12761195	T	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=12.23	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:0,3:1.00:0:3:0.00:0,108:0:0	0/0:5,0:0.00:0:0:.:152,0:3:2
chr10	102732950	rs2778037	G	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.42;TLOD=81.47	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:25,25:0.500:9:16:0.360:853,856:18:7	0/0:18,0:0.00:0:0:.:610,0:11:7
chr10	102835491	rs4919687	G	A	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.34;TLOD=47.24	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:17,15:0.469:10:5:0.667:561,498:10:7	0/0:19,1:0.050:0:1:0.00:637,32:9:10
chr10	102874717	rs3740394	A	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=9.83	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:6,3:0.375:2:1:0.333:196,107:0:6	0/0:6,0:0.00:0:0:.:200,0:3:3
chr10	102878235	rs10786719	A	G	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.34;TLOD=32.42	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:9,10:0.526:3:7:0.700:283,337:7:2	0/0:17,1:0.056:1:0:0.00:540,36:13:4
chr10	102878966	rs11191439	T	C	.	alt_allele_in_normal	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.32;TLOD=156.15	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:44,57:0.559:38:19:0.667:1433,1737:19:25	0/0:54,3:0.058:2:1:0.667:1769,99:31:23
chr10	103089711	rs3740387	G	A	.	alt_allele_in_normal	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.55;TLOD=113.45	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:34,39:0.545:24:15:0.615:985,1259:20:14	0/0:33,1:0.032:1:0:1.00:972,33:21:12
chr10	103095899	rs1926030	T	C	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=3;MAX_ED=.;MIN_ED=.;NLOD=1.21;TLOD=134.71	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:21,49:0.661:20:29:0.408:677,1672:14:7	0/0:45,3:0.070:2:1:0.667:1489,103:22:23
chr10	103288513	.	AGAG	A	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.25;RPA=6,5;RU=GAG;STR;TLOD=4.78	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:108,3:0.021:0:3:.:3632,103:55:53	0/0:39,1:0.028:0:1:.:1329,33:15:24
chr10	103434719	rs4917389	C	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=13.00	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,4:0.500:3:1:0.250:135,135:3:1	0/0:6,0:0.00:0:0:.:194,0:3:3
chr10	103967788	.	GAGA	G	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=16.78;RPA=4,3;RU=AGA;STR;TLOD=4.78	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:110,2:0.021:2:0:.:3491,64:58:52	0/0:59,0:0.00:0:0:.:1891,0:29:30
chr10	104021774	rs10883961	C	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.71;TLOD=35.50	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:7,11:0.611:9:2:0.182:201,355:5:2	0/0:9,0:0.00:0:0:.:254,0:3:6
chr10	104077437	.	C	T	.	germline_risk;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=4.20	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:27,3:0.077:1:2:0.667:852,69:18:9	0/0:8,0:0.00:0:0:.:259,0:5:3
chr10	105167230	.	ATTG	A	.	alt_allele_in_normal;str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.36;RPA=7,6;RU=TTG;STR;TLOD=5.50	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:30,2:0.069:2:0:.:931,66:13:17	0/0:30,1:0.034:1:0:.:963,29:21:9
chr10	105214365	.	AAC	A	.	alt_allele_in_normal;germline_risk;str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.65;RPA=8,7;RU=AC;STR;TLOD=6.26	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:60,5:0.067:3:2:.:1910,161:27:33	0/0:35,3:0.081:1:2:.:1071,96:10:25
chr10	110126331	rs3731566	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=36.32	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:3,10:0.769:3:7:0.300:102,346:1:2	0/0:7,0:0.00:0:0:.:240,0:1:6
chr10	110450990	rs4142575	T	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=11.25	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,4:0.800:2:2:0.500:2,100:1:0	0/0:3,0:0.00:0:0:.:95,0:0:3
chr10	112157077	rs2254532	A	C	.	germline_risk;t_lod_fstar	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.01;TLOD=6.19	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:3,2:0.400:2:0:0.00:99,67:2:1	0/0:10,0:0.00:0:0:.:333,0:7:3
chr10	112161596	rs2250802	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.71;TLOD=8.30	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:5,3:0.375:1:2:0.333:178,92:2:3	0/0:9,0:0.00:0:0:.:297,0:4:5
chr10	112404668	.	TTC	T	.	alt_allele_in_normal;str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=16.69;RPA=7,6;RU=TC;STR;TLOD=4.16	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:164,3:0.019:0:3:.:5473,101:99:65	0/0:78,2:0.025:0:2:.:2571,68:43:35
chr10	112411820	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=6.62;TLOD=4.01	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:38,2:0.050:2:0:1.00:1279,65:23:15	0/0:22,0:0.00:0:0:.:761,0:11:11
chr10	113482772	rs1046528	T	G	.	clustered_events;germline_risk	DB;ECNT=2;HCNT=2;MAX_ED=55;MIN_ED=55;NLOD=3.31;TLOD=22.82	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:7,7:0.500:5:2:0.714:227,237:3:4	0/0:11,0:0.00:0:0:.:367,0:6:5
chr10	113482827	.	CA	C	.	clustered_events	ECNT=2;HCNT=2;MAX_ED=55;MIN_ED=55;NLOD=3.91;TLOD=44.59	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:18,14:0.483:8:6:.:628,477:11:7	0/0:13,0:0.00:0:0:.:457,0:8:5
chr10	113848892	.	TAC	T	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.19;RPA=8,7;RU=AC;STR;TLOD=4.94	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:34,3:0.081:0:3:.:1057,97:11:23	0/0:14,0:0.00:0:0:.:443,0:8:6
chr10	114445508	rs6585279	C	T	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.64;TLOD=45.20	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:18,15:0.455:12:3:0.200:479,479:13:5	0/0:17,1:0.056:1:0:0.00:480,33:8:9
chr10	114465606	rs7899255	G	A	.	PASS	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.92;TLOD=28.43	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:7,9:0.563:4:5:0.444:199,289:2:5	0/0:23,0:0.00:0:0:.:635,0:14:9
chr10	114602081	rs2277265	A	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=12.07	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:10,4:0.286:2:2:0.500:310,138:4:6	0/0:6,0:0.00:0:0:.:191,0:3:3
chr10	114842901	rs117288904	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=20.22	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:7,7:0.500:5:2:0.714:259,211:4:3	0/0:7,0:0.00:0:0:.:245,0:4:3
chr10	115160329	rs2065719	A	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=9.68	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:7,3:0.300:3:0:0.00:213,109:5:2	0/0:5,0:0.00:0:0:.:149,0:4:1
chr10	115519381	rs41310290	C	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=11.29	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:8,4:0.333:3:1:0.250:273,127:4:4	0/0:6,0:0.00:0:0:.:205,0:3:3
chr10	116125439	rs2245020	G	A	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.29;TLOD=63.93	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:19,21:0.538:11:10:0.524:529,655:11:8	0/0:16,1:0.059:0:1:0.00:490,33:11:5
chr10	116960073	rs76738053	C	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=28.63	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:5,9:0.643:4:5:0.556:162,283:2:3	0/0:7,0:0.00:0:0:.:236,0:3:4
chr10	119072669	rs11198754	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=6.72	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,2:0.667:1:1:0.500:30,66:0:1	0/0:4,0:0.00:0:0:.:117,0:3:1
chr10	119146428	.	CGT	C	.	alt_allele_in_normal;germline_risk;str_contraction	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.14;RPA=16,15;RU=GT;STR;TLOD=9.29	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:7,18:0.295:3:0:.:27,83:1:1	0/0:15,3:0.048:0:1:.:96,28:2:3
chr10	119500239	.	G	A	.	alt_allele_in_normal	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=3.91;TLOD=121.95	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:57,48:0.430:23:25:0.479:1785,1565:35:22	0/0:56,3:0.059:1:2:0.333:1706,100:29:27
chr10	119823069	.	A	G	.	t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=8.43;TLOD=4.01	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:71,2:0.032:2:0:0.00:2275,69:37:34	0/0:30,0:0.00:0:0:.:971,0:20:10
chr10	119898289	.	CTG	C	.	germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=19.77	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:7,6:0.462:3:3:.:238,203:2:5	0/0:7,0:0.00:0:0:.:229,0:5:2
chr10	121496333	rs17612814	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.61;TLOD=40.40	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:10,13:0.565:6:7:0.462:286,411:5:5	0/0:12,0:0.00:0:0:.:335,0:6:6
chr10	121713508	rs2901295	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=6.62	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,2:0.667:0:2:0.00:29,65:0:1	0/0:4,0:0.00:0:0:.:112,0:2:2
chr10	121899080	rs3750837	C	T	.	clustered_events;germline_risk	DB;ECNT=2;HCNT=2;MAX_ED=7;MIN_ED=7;NLOD=1.20;TLOD=17.89	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:6,5:0.455:2:3:0.600:0|1:121899080_C_T:171,146:5:1	0/0:4,0:0.00:0:0:.:0|1:121899080_C_T:117,0:0:4
chr10	121899087	rs3750836	G	A	.	clustered_events;germline_risk	DB;ECNT=2;HCNT=2;MAX_ED=7;MIN_ED=7;NLOD=0.903;TLOD=17.85	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:7,5:0.417:2:3:0.400:0|1:121899080_C_T:235,156:6:1	0/0:3,0:0.00:0:0:.:0|1:121899080_C_T:97,0:0:3
chr10	122132413	rs2420997	T	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=10.17	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,3:0.600:2:1:0.667:58,102:0:2	0/0:3,0:0.00:0:0:.:92,0:1:2
chr10	122276675	rs7086389	T	C	.	germline_risk	DB;ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=23.40	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:5,7:0.583:2:5:0.286:158,236:4:1	0/0:7,0:0.00:0:0:.:220,0:2:5
chr10	122290940	rs11814901	T	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.61;TLOD=27.69	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:15,9:0.375:7:2:0.778:395,303:6:9	0/0:12,0:0.00:0:0:.:362,0:7:5
chr10	122507475	.	GTTGT	G	.	germline_risk;str_contraction	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.581;RPA=3,2;RU=TTGT;STR;TLOD=14.54	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:9,4:0.308:3:1:.:305,138:6:3	0/0:2,0:0.00:0:0:.:70,0:1:1
chr10	122983167	rs3736584	C	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=6.52	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,2:0.667:1:1:0.500:35,64:1:0	0/0:5,0:0.00:0:0:.:154,0:4:1
chr10	122987285	rs7096614	T	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=31.15	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,8:0.889:4:4:0.500:34,287:1:0	0/0:4,0:0.00:0:0:.:132,0:2:2
chr10	123761934	.	G	A	.	alt_allele_in_normal;germline_risk	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.72;TLOD=74.09	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:21,24:0.545:14:10:0.583:589,758:12:9	0/0:30,2:0.065:1:1:0.500:847,66:16:14
chr10	123768648	.	CCAG	C	.	alt_allele_in_normal;str_contraction;t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=27.60;RPA=5,4;RU=CAG;STR;TLOD=4.17	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:231,2:0.010:1:1:.:7746,67:98:133	0/0:150,2:0.016:1:1:.:5098,68:72:78
chr10	124484440	.	C	A	.	germline_risk;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=4.83	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:11,2:0.154:2:0:0.00:383,63:7:4	0/0:6,0:0.00:0:0:.:201,0:4:2
chr10	124498202	rs17620824	A	G	.	germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=41.78	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:12,13:0.520:8:5:0.385:372,431:8:4	0/0:7,0:0.00:0:0:.:222,0:2:5
chr10	124791812	.	C	T	.	germline_risk	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.11;TLOD=21.57	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:10,7:0.500:5:2:0.286:270,224:5:5	0/0:8,1:0.143:1:0:0.00:250,2:3:5
chr10	126008663	.	CTG	C	.	germline_risk;str_contraction;t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.20;RPA=6,5;RU=TG;STR;TLOD=4.90	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:11,2:0.154:2:0:.:394,74:6:5	0/0:4,0:0.00:0:0:.:145,0:1:3
chr10	128072029	rs11016049	G	C	.	germline_risk;t_lod_fstar	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=5.84	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:5,2:0.286:2:0:1.00:138,67:3:2	0/0:4,0:0.00:0:0:.:114,0:2:2
chr10	128073531	rs11016053	C	T	.	germline_risk	DB;ECNT=1;HCNT=3;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=24.90	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:8,8:0.500:4:4:0.500:277,259:1:7	0/0:5,0:0.00:0:0:.:170,0:4:1
chr10	128079395	rs3763790	G	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=8.83	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:5,3:0.375:2:1:0.667:181,97:2:3	0/0:7,0:0.00:0:0:.:243,0:3:4
chr10	128099301	rs3781301	C	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.71;TLOD=20.04	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:11,8:0.389:3:5:0.625:337,251:9:2	0/0:10,0:0.00:0:0:.:348,0:6:4
chr10	128101279	rs10082504	C	T	.	PASS	DB;ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=13.18;TLOD=130.51	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:60,48:0.448:24:24:0.500:2076,1552:30:30	0/0:63,1:0.018:1:0:0.00:2185,29:37:26
chr10	130106022	rs61749960	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=23.26	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:11,9:0.444:3:6:0.333:281,281:8:3	0/0:4,0:0.00:0:0:.:128,0:4:0
chr10	131116787	rs2298192	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=12.02	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:5,4:0.444:2:2:0.500:136,128:3:2	0/0:7,0:0.00:0:0:.:197,0:4:3
chr10	132137138	rs75996870	T	C	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=0.932;TLOD=119.03	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:55,45:0.455:21:24:0.467:1760,1411:37:18	0/0:65,6:0.076:1:5:0.167:2104,193:32:33
chr10	132141923	rs11592585	A	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=11.30	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,5:0.500:4:1:0.200:125,153:1:3	0/0:4,0:0.00:0:0:.:133,0:1:3
chr10	132149962	rs9419380	A	G	.	germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=18.49	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:10,8:0.375:5:3:0.375:287,268:5:5	0/0:8,0:0.00:0:0:.:240,0:5:3
chr10	132226786	rs2306982	C	A	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=2.38;TLOD=122.82	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:60,43:0.423:24:19:0.442:1961,1385:32:28	0/0:33,2:0.059:2:0:0.00:1068,69:21:12
chr10	132324134	rs11146329	G	A	.	germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=25.50	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,8:0.667:4:4:0.500:135,250:4:0	0/0:4,0:0.00:0:0:.:135,0:2:2
chr10	132833680	.	C	T	.	germline_risk;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=5.62	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:6,2:0.250:1:1:0.500:139,66:3:3	0/0:7,0:0.00:0:0:.:199,0:1:6
chr10	132862817	rs11146552	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=15.71	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:3,6:0.625:1:5:0.167:90,189:1:2	0/0:4,0:0.00:0:0:.:122,0:3:1
chr10	133224584	rs11597218	C	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=35.91	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:11,12:0.522:8:4:0.333:373,371:4:7	0/0:7,0:0.00:0:0:.:226,0:4:3
chr10	133231518	rs2998111	C	T	.	germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=6.72	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,2:0.400:1:1:0.500:128,66:2:2	0/0:5,0:0.00:0:0:.:168,0:1:4
chr10	133559093	rs10857749	C	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=9.57	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,3:0.600:1:2:0.667:71,96:1:1	0/0:4,0:0.00:0:0:.:138,0:2:2
chr10	133625494	.	G	A	.	alt_allele_in_normal;t_lod_fstar	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=26.32;TLOD=4.20	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:153,3:0.019:1:2:0.333:4967,97:69:84	0/0:108,2:9.259e-03:2:0:1.00:3505,66:59:49
chr11	214163	rs1533825	G	A	.	clustered_events;germline_risk	DB;ECNT=2;HCNT=1;MAX_ED=6;MIN_ED=6;NLOD=3.01;TLOD=35.81	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:5,8:0.643:2:6:0.250:0|1:214163_G_A:153,257:3:2	0/0:9,0:0.00:0:0:.:0|1:214163_G_A:306,0:4:5
chr11	214169	rs1533824	T	C	.	clustered_events;germline_risk	DB;ECNT=2;HCNT=1;MAX_ED=6;MIN_ED=6;NLOD=3.01;TLOD=35.39	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:6,9:0.600:3:6:0.333:0|1:214163_G_A:180,308:3:3	0/0:10,0:0.00:0:0:.:0|1:214163_G_A:307,0:4:6
chr11	372700	rs35475866	G	C	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.65;TLOD=76.74	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:30,35:0.531:16:19:0.457:1022,1009:18:12	0/0:19,1:0.063:1:0:1.00:628,28:12:7
chr11	373404	.	G	A	.	clustered_events;homologous_mapping_event	ECNT=3;HCNT=2;MAX_ED=19;MIN_ED=16;NLOD=4.82;TLOD=16.48	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:14,5:0.238:3:2:0.600:0|1:373404_G_A:479,170:8:6	0/0:14,0:0.00:0:0:.:0|1:373404_G_A:470,0:7:7
chr11	373420	.	A	C	.	clustered_events;multi_event_alt_allele_in_normal	ECNT=3;HCNT=4;MAX_ED=19;MIN_ED=16;NLOD=5.04;TLOD=13.23	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:22,4:0.160:3:1:0.250:528,105:9:13	0/0:19,2:0.095:1:1:0.500:503,4:9:10
chr11	373423	.	A	C	.	clustered_events;homologous_mapping_event	ECNT=3;HCNT=2;MAX_ED=19;MIN_ED=16;NLOD=7.83;TLOD=8.78	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:29,4:0.100:3:1:0.250:0|1:373404_G_A:756,38:16:13	0/0:24,0:0.00:0:0:.:0|1:373404_G_A:677,0:14:10
chr11	433532	.	C	G	.	alt_allele_in_normal;clustered_events;germline_risk	ECNT=2;HCNT=1;MAX_ED=35;MIN_ED=35;NLOD=1.86;TLOD=52.60	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:13,17:0.552:8:9:0.529:0|1:433532_C_G:445,541:7:6	0/0:17,1:0.056:0:1:1.00:0|1:433532_C_G:593,32:6:11
chr11	433567	.	C	CACCTCA	.	clustered_events	ECNT=2;HCNT=1;MAX_ED=35;MIN_ED=35;NLOD=2.21;TLOD=10.84	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:6,3:0.333:1:2:.:0|1:433532_C_G:197,103:3:3	0/0:6,0:0.00:0:0:.:0|1:433532_C_G:200,0:2:4
chr11	562360	.	C	T	.	germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=24.05	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,8:0.889:4:4:0.500:34,268:1:0	0/0:4,0:0.00:0:0:.:136,0:0:4
chr11	654043	rs10902188	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.602;TLOD=12.22	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,4:0.800:0:4:0.00:35,127:0:1	0/0:19,0:0.00:0:0:.:644,0:6:13
chr11	726824	.	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=22.03	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,7:0.636:3:4:0.429:132,219:2:2	0/0:7,0:0.00:0:0:.:233,0:5:2
chr11	1190028	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=2;HCNT=7;MAX_ED=18;MIN_ED=18;NLOD=10.11;TLOD=11.17	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:149,7:0.050:3:4:0.429:5122,228:78:71	0/0:110,11:0.095:5:6:0.455:3737,327:46:64
chr11	1190046	.	T	C	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=2;HCNT=6;MAX_ED=18;MIN_ED=18;NLOD=21.10;TLOD=4.54	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:123,2:0.016:1:1:0.500:3942,68:64:59	0/0:107,2:0.018:1:1:0.500:3488,70:45:62
chr11	1191900	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=3;HCNT=1;MAX_ED=30;MIN_ED=29;NLOD=3.25;TLOD=12.66	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:124,7:0.040:4:3:0.571:0|1:1191900_G_A:3481,233:55:69	0/0:62,4:0.065:1:3:0.250:0|1:1191900_G_A:1794,135:32:30
chr11	1191929	.	C	G	.	clustered_events;homologous_mapping_event	ECNT=3;HCNT=1;MAX_ED=30;MIN_ED=29;NLOD=29.59;TLOD=12.30	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:148,5:0.034:3:2:0.400:0|1:1191900_G_A:4943,126:62:86	0/0:100,0:0.00:0:0:.:0|1:1191900_G_A:3323,0:50:50
chr11	1191930	.	C	T	.	clustered_events;homologous_mapping_event	ECNT=3;HCNT=1;MAX_ED=30;MIN_ED=29;NLOD=29.29;TLOD=12.35	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:152,5:0.035:3:2:0.400:0|1:1191900_G_A:4841,125:64:88	0/0:101,0:0.00:0:0:.:0|1:1191900_G_A:3130,0:51:50
chr11	1196917	rs28515631	A	C	.	germline_risk	DB;ECNT=1;HCNT=3;MAX_ED=.;MIN_ED=.;NLOD=3.31;TLOD=64.08	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:18,21:0.543:10:11:0.524:598,722:8:10	0/0:12,0:0.00:0:0:.:396,0:7:5
chr11	1199534	.	C	T	.	germline_risk	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=9.35	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,3:0.429:2:1:0.333:133,100:2:2	0/0:4,0:0.00:0:0:.:134,0:2:2
chr11	1229258	rs2075859	C	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=17.53	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:7,7:0.462:4:3:0.429:206,219:3:4	0/0:6,0:0.00:0:0:.:174,0:0:6
chr11	1232626	rs1318321	T	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.41;TLOD=31.73	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:11,12:0.550:3:9:0.250:350,353:4:7	0/0:10,0:0.00:0:0:.:317,0:5:5
chr11	1232808	rs11026355	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=24.05	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:14,10:0.450:4:6:0.400:450,286:8:6	0/0:7,0:0.00:0:0:.:236,0:3:4
chr11	1243461	.	T	C	.	clustered_events;multi_event_alt_allele_in_normal	ECNT=3;HCNT=2;MAX_ED=51;MIN_ED=19;NLOD=7.84;TLOD=14.08	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:46,4:0.098:0:4:0.00:0|1:1243461_T_C:1457,127:15:31	0/0:37,1:0.024:0:1:0.00:0|1:1243461_T_C:1188,35:20:17
chr11	1243480	.	A	G	.	alt_allele_in_normal;clustered_events	ECNT=3;HCNT=2;MAX_ED=51;MIN_ED=19;NLOD=3.90;TLOD=23.64	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:56,9:0.138:3:6:0.667:0|1:1243461_T_C:1750,296:20:36	0/0:51,3:0.056:1:2:0.667:0|1:1243461_T_C:1604,96:29:22
chr11	1243512	.	G	C	.	alt_allele_in_normal;clustered_events	ECNT=3;HCNT=2;MAX_ED=51;MIN_ED=19;NLOD=7.19;TLOD=107.62	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:91,41:0.323:21:20:0.512:2628,1330:36:55	0/0:91,7:0.074:5:2:0.714:2514,232:55:36
chr11	1244642	.	G	A	.	alt_allele_in_normal	ECNT=1;HCNT=45;MAX_ED=.;MIN_ED=.;NLOD=57.30;TLOD=17.63	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:392,16:0.042:6:10:0.375:11924,532:157:235	0/0:216,4:0.019:2:2:0.500:6635,127:86:130
chr11	1245466	.	A	C	.	alt_allele_in_normal;t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=31.30;TLOD=5.32	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:102,4:0.042:1:3:0.750:3283,133:45:57	0/0:111,4:0.037:2:2:0.500:3624,148:45:66
chr11	1247701	.	A	C	.	alt_allele_in_normal	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=8.26;TLOD=13.03	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:114,8:0.070:3:5:0.625:3625,227:57:57	0/0:95,7:0.072:3:4:0.571:3027,210:50:45
chr11	1249152	.	C	G	.	alt_allele_in_normal	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=36.49;TLOD=7.45	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:264,8:0.016:1:7:0.875:7987,279:108:156	0/0:139,4:0.015:1:3:0.750:4182,138:61:78
chr11	1250689	.	C	T	.	alt_allele_in_normal;t_lod_fstar	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=26.57;TLOD=4.20	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:202,6:0.029:1:5:0.833:6613,164:77:125	0/0:150,5:0.033:3:2:0.400:4940,125:50:100
chr11	1258256	rs2249550	A	G	.	germline_risk;t_lod_fstar	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=5.49	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:10,2:0.167:1:1:0.500:319,69:6:4	0/0:7,0:0.00:0:0:.:219,0:4:3
chr11	1288529	.	C	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.71;TLOD=35.93	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:8,11:0.579:5:6:0.545:267,363:5:3	0/0:9,0:0.00:0:0:.:309,0:5:4
chr11	1440987	rs9651643	C	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=31.97	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:6,10:0.625:3:7:0.700:201,318:5:1	0/0:7,0:0.00:0:0:.:226,0:3:4
chr11	1450851	.	G	C	.	germline_risk	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=10.87	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:8,5:0.385:1:4:0.200:260,132:2:6	0/0:5,0:0.00:0:0:.:169,0:5:0
chr11	1454398	rs66529968	C	T	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.61;TLOD=144.05	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:51,52:0.489:30:22:0.423:1666,1677:12:39	0/0:48,3:0.061:2:1:0.333:1542,97:28:20
chr11	1803230	rs72850984	G	A	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.68;TLOD=43.97	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:20,14:0.412:7:7:0.500:674,473:13:7	0/0:31,2:0.065:1:1:0.500:1044,67:13:18
chr11	1923023	.	TTC	T	.	alt_allele_in_normal;str_contraction	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=18.14;RPA=6,5;RU=TC;STR;TLOD=8.58	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:200,6:0.028:3:3:.:6564,195:98:102	0/0:88,2:0.024:1:1:.:2910,64:44:44
chr11	2335241	.	G	A	.	PASS	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.31;TLOD=44.59	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:14,18:0.552:9:9:0.500:405,578:8:6	0/0:18,0:0.00:0:0:.:537,0:8:10
chr11	2418537	rs886277	T	C	.	PASS	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.21;TLOD=56.16	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:16,21:0.586:7:14:0.333:501,706:8:8	0/0:18,0:0.00:0:0:.:584,0:11:7
chr11	2418646	rs886278	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=32.73	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,9:0.818:6:3:0.667:67,307:1:1	0/0:6,0:0.00:0:0:.:201,0:3:3
chr11	3120731	rs12791724	G	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=20.25	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,7:0.636:4:3:0.571:136,201:1:3	0/0:6,0:0.00:0:0:.:202,0:3:3
chr11	3418199	rs12419930	C	G	.	clustered_events	DB;ECNT=2;HCNT=6;MAX_ED=26;MIN_ED=26;NLOD=6.02;TLOD=27.47	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:29,13:0.297:5:8:0.615:978,384:11:18	0/0:22,0:0.00:0:0:.:759,0:11:11
chr11	3418225	.	A	C	.	alt_allele_in_normal;clustered_events	ECNT=2;HCNT=6;MAX_ED=26;MIN_ED=26;NLOD=4.55;TLOD=38.74	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:35,15:0.318:4:11:0.733:1078,491:12:23	0/0:30,1:0.036:0:1:1.00:958,34:14:16
chr11	3418394	rs7942642	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=12.63	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:3,4:0.571:1:3:0.250:101,128:1:2	0/0:6,0:0.00:0:0:.:205,0:3:3
chr11	4082294	rs2304891	A	G	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.23;TLOD=75.36	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:23,25:0.500:12:13:0.520:743,855:13:10	0/0:18,1:0.056:0:1:1.00:588,37:9:9
chr11	4211784	.	A	G	.	alt_allele_in_normal	ECNT=3;HCNT=1;MAX_ED=2;MIN_ED=1;NLOD=3.55;TLOD=54.04	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:14,17:0.500:14:3:0.176:0|1:4211784_A_G:479,600:11:3	0/0:28,1:0.038:0:1:1.00:0|1:4211784_A_G:961,36:9:19
chr11	4211785	.	G	T	.	alt_allele_in_normal	ECNT=3;HCNT=1;MAX_ED=2;MIN_ED=1;NLOD=3.55;TLOD=53.75	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:14,17:0.483:14:3:0.824:0|1:4211784_A_G:494,540:11:3	0/0:27,1:0.038:0:1:0.00:0|1:4211784_A_G:967,31:8:19
chr11	4211786	.	A	AGTC	.	homologous_mapping_event;t_lod_fstar;triallelic_site	ECNT=3;HCNT=1;MAX_ED=2;MIN_ED=1;NLOD=6.82;RPA=1,2;RU=GTC;STR;TLOD=6.12	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:16,2:0.061:0:0:.:454,0:11:3	0/0:28,0:0.00:0:0:.:906,0:8:19
chr11	4329768	.	A	G	.	germline_risk;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=5.92	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,2:0.667:1:1:0.500:32,58:1:0	0/0:7,0:0.00:0:0:.:222,0:3:4
chr11	4368357	rs7929171	G	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=12.78	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:7,4:0.364:3:1:0.750:233,140:6:1	0/0:5,0:0.00:0:0:.:154,0:2:3
chr11	4724165	rs10768206	A	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=15.54	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:10,6:0.333:5:1:0.167:318,208:5:5	0/0:7,0:0.00:0:0:.:232,0:5:2
chr11	4923966	rs1378739	T	G	.	alt_allele_in_normal	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=7.09;TLOD=93.88	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:59,33:0.370:19:14:0.576:1820,1136:29:30	0/0:49,2:0.040:0:2:0.00:1503,70:17:32
chr11	4955324	.	A	G	.	alt_allele_in_normal	ECNT=1;HCNT=8;MAX_ED=.;MIN_ED=.;NLOD=11.93;TLOD=86.12	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:155,35:0.201:20:15:0.429:4995,1179:84:71	0/0:151,23:0.146:16:7:0.304:4927,793:82:69
chr11	4998887	rs10837108	C	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.71;TLOD=25.10	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:17,8:0.320:5:3:0.375:588,281:11:6	0/0:9,0:0.00:0:0:.:319,0:5:4
chr11	5037386	rs2499970	A	G	.	germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=37.95	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:6,11:0.647:6:5:0.455:191,375:4:2	0/0:5,0:0.00:0:0:.:155,0:3:2
chr11	5315486	rs7932505	T	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.41;TLOD=8.20	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:10,3:0.250:0:3:0.00:304,97:4:6	0/0:8,0:0.00:0:0:.:249,0:5:3
chr11	5508687	.	CTGG	C	.	str_contraction	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=25.42;RPA=5,4;RU=TGG;STR;TLOD=9.29	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:165,5:0.028:1:4:.:5672,173:96:69	0/0:101,1:0.011:0:1:.:3388,21:55:46
chr11	5947955	rs10769378	A	G	.	alt_allele_in_normal	DB;ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=3.29;TLOD=239.47	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:109,76:0.435:39:37:0.487:3630,2651:61:48	0/0:77,5:0.064:1:4:0.800:2565,178:35:42
chr11	6002351	rs11040248	A	G	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.08;TLOD=100.69	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:16,30:0.636:12:18:0.600:481,1062:5:11	0/0:30,2:0.065:1:1:0.500:973,73:12:18
chr11	6395934	.	A	C	.	alt_allele_in_normal	ECNT=1;HCNT=64;MAX_ED=.;MIN_ED=.;NLOD=13.18;TLOD=10.01	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:133,40:0.232:18:22:0.550:3542,257:52:81	0/0:79,12:0.141:9:3:0.250:2077,44:35:44
chr11	6481497	rs11604726	C	G	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.73;TLOD=44.61	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:18,16:0.452:7:9:0.563:525,539:8:10	0/0:22,1:0.048:1:0:0.00:639,34:15:7
chr11	6786012	rs497681	G	A	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.573;TLOD=54.34	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:15,17:0.531:7:10:0.412:532,560:5:10	0/0:26,2:0.071:1:1:0.500:891,69:13:13
chr11	6845991	.	TTTC	T	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=17.70;RPA=4,3;RU=TTC;STR;TLOD=4.39	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:157,2:0.013:2:0:.:5179,64:78:79	0/0:82,1:0.013:0:1:.:2663,34:34:48
chr11	7417864	rs35452185	A	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=16.93	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:10,7:0.412:4:3:0.429:311,186:5:5	0/0:4,0:0.00:0:0:.:130,0:3:1
chr11	7620800	rs10769813	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.21;TLOD=27.03	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:13,9:0.409:3:6:0.333:363,292:8:5	0/0:14,0:0.00:0:0:.:398,0:5:9
chr11	7628409	rs6578886	C	G	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.15;TLOD=102.07	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:32,32:0.508:23:9:0.281:1108,1092:21:11	0/0:26,1:0.037:1:0:0.00:919,35:13:13
chr11	8099054	rs16935778	T	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=9.53	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:5,3:0.375:2:1:0.667:168,104:3:2	0/0:5,0:0.00:0:0:.:163,0:4:1
chr11	8919650	rs4910156	T	G	.	clustered_events;germline_risk	DB;ECNT=2;HCNT=2;MAX_ED=18;MIN_ED=18;NLOD=1.15;TLOD=24.51	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:3,6:0.667:4:2:0.667:0|1:8919650_T_G:103,204:1:2	0/0:4,0:0.00:0:0:.:0|1:8919650_T_G:135,0:3:1
chr11	8919668	rs4910157	A	G	.	clustered_events;germline_risk	DB;ECNT=2;HCNT=2;MAX_ED=18;MIN_ED=18;NLOD=0.551;TLOD=24.08	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:4,6:0.600:4:2:0.333:0|1:8919650_T_G:119,201:1:3	0/0:1,0:0.00:0:0:.:0|1:8919650_T_G:28,0:1:0
chr11	9029677	rs1960180	T	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=31.76	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:9,10:0.526:6:4:0.600:282,327:6:3	0/0:6,0:0.00:0:0:.:187,0:3:3
chr11	9150885	rs10769995	A	G	.	germline_risk;t_lod_fstar	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=6.20	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:6,2:0.250:2:0:0.00:203,72:2:4	0/0:5,0:0.00:0:0:.:165,0:1:4
chr11	9178249	.	TATC	T	.	str_contraction	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=30.28;RPA=4,3;RU=ATC;STR;TLOD=7.19	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:144,3:0.021:3:0:.:4612,92:76:68	0/0:102,0:0.00:0:0:.:3230,0:50:52
chr11	9585129	rs11042431	A	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=23.64	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,8:0.800:6:2:0.250:61,220:2:0	0/0:7,0:0.00:0:0:.:228,0:5:2
chr11	9606242	.	G	A	.	alt_allele_in_normal;clustered_events;germline_risk;t_lod_fstar	ECNT=3;HCNT=4;MAX_ED=10;MIN_ED=5;NLOD=2.00;TLOD=5.33	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:196,3:0.017:1:2:0.333:0|1:9606242_G_A:6702,94:65:131	0/0:111,7:0.065:2:5:0.286:0|1:9606242_G_A:3823,215:37:74
chr11	9606247	.	A	AG	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=3;HCNT=4;MAX_ED=10;MIN_ED=5;NLOD=6.11;TLOD=4.19	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:198,2:0.011:1:1:.:0|1:9606242_G_A:6434,68:67:131	0/0:102,6:0.055:2:4:.:0|1:9606242_G_A:3325,192:30:72
chr11	9606252	.	A	AAG	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=3;HCNT=4;MAX_ED=10;MIN_ED=5;NLOD=17.50;TLOD=4.19	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:191,2:0.011:1:1:.:0|1:9606242_G_A:6360,64:66:125	0/0:101,3:0.029:1:2:.:0|1:9606242_G_A:3361,92:28:73
chr11	9660680	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.91;TLOD=4.56	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:25,2:0.074:0:2:0.00:839,67:10:15	0/0:22,0:0.00:0:0:.:738,0:8:14
chr11	9713658	.	A	G	.	alt_allele_in_normal	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=6.63;TLOD=8.45	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:107,28:0.148:12:16:0.571:3388,351:64:43	0/0:64,10:0.152:3:7:0.700:2128,94:32:32
chr11	9992589	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.82;TLOD=4.37	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:27,2:0.074:1:1:0.500:900,66:11:16	0/0:18,0:0.00:0:0:.:587,0:9:9
chr11	10503059	rs10840431	C	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=6.55	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,2:0.500:0:2:1.00:69,68:1:1	0/0:4,0:0.00:0:0:.:142,0:1:3
chr11	10593710	rs117131664	G	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=11.92	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:5,4:0.444:2:2:0.500:179,127:3:2	0/0:4,0:0.00:0:0:.:144,0:2:2
chr11	10609700	rs3741042	C	T	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.54;TLOD=44.03	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:14,15:0.517:8:7:0.467:482,456:8:6	0/0:20,1:0.050:0:1:1.00:690,30:10:10
chr11	10628782	rs2278125	C	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=15.02	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:11,5:0.385:5:0:0.00:368,164:4:7	0/0:4,0:0.00:0:0:.:140,0:2:2
chr11	10631879	rs10840450	A	G	.	germline_risk;t_lod_fstar	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=5.90	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:6,2:0.250:1:1:0.500:188,69:4:2	0/0:6,0:0.00:0:0:.:195,0:2:4
chr11	10775729	.	CTTTCTT	C	.	germline_risk;str_contraction	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;RPA=2,1;RU=TTTCTT;STR;TLOD=12.06	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,3:0.600:2:1:.:70,108:0:2	0/0:4,0:0.00:0:0:.:142,0:3:1
chr11	12358198	.	G	T	.	germline_risk;t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=4.39	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:24,2:0.077:2:0:1.00:824,65:13:11	0/0:6,0:0.00:0:0:.:209,0:3:3
chr11	12474028	rs2288290	C	G	.	germline_risk	DB;ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=6.34	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:5,3:0.286:2:1:0.333:169,98:1:4	0/0:4,0:0.00:0:0:.:134,0:2:2
chr11	14482917	rs7121538	A	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=19.37	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:5,6:0.545:3:3:0.500:159,198:4:1	0/0:5,0:0.00:0:0:.:173,0:2:3
chr11	17135168	.	GCA	G	.	alt_allele_in_normal;str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=9.78;RPA=7,6;RU=CA;STR;TLOD=5.47	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:228,8:0.011:4:4:.:7318,277:101:110	0/0:121,10:0.023:3:5:.:3777,274:54:56
chr11	17393210	rs41282912	C	T	.	clustered_events;germline_risk	DB;ECNT=2;HCNT=1;MAX_ED=20;MIN_ED=20;NLOD=5.11;TLOD=51.76	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:9,15:0.625:8:7:0.467:0|1:17393210_C_T:262,472:4:5	0/0:17,0:0.00:0:0:.:0|1:17393210_C_T:475,0:13:4
chr11	17393230	.	AG	A	.	clustered_events	ECNT=2;HCNT=1;MAX_ED=20;MIN_ED=20;NLOD=4.81;RPA=2,1;RU=G;STR;TLOD=30.34	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:6,8:0.571:5:3:.:0|1:17393210_C_T:186,266:2:4	0/0:15,0:0.00:0:0:.:0|1:17393210_C_T:489,0:10:5
chr11	17406616	rs113873225	G	A	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.54;TLOD=55.63	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:24,21:0.452:13:8:0.619:683,651:7:17	0/0:23,1:0.042:0:1:0.00:644,32:9:14
chr11	17474969	rs1048099	A	G	.	alt_allele_in_normal	DB;ECNT=1;HCNT=8;MAX_ED=.;MIN_ED=.;NLOD=4.55;TLOD=77.05	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:34,29:0.466:18:11:0.379:1107,887:12:22	0/0:25,1:0.038:0:1:1.00:825,28:13:12
chr11	18189795	.	T	TG	.	PASS	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.89;RPA=6,7;RU=G;STR;TLOD=9.75	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:6,6:0.182:2:3:.:207,150:3:3	0/0:13,0:0.00:0:0:.:275,0:3:5
chr11	18245565	rs2445173	A	G	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.15;TLOD=47.18	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:28,16:0.349:8:8:0.500:874,556:14:14	0/0:25,1:0.037:0:1:1.00:794,35:16:9
chr11	18434688	.	A	AT	.	triallelic_site	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=6.78;RPA=7,8;RU=T;STR;TLOD=11.16	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:21,21:0.333:0:0:.:704,0:14:7	0/0:24,1:0.020:0:0:.:819,0:14:10
chr11	18771852	rs4075663	G	A	.	germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=4.51;TLOD=27.16	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:12,10:0.429:3:7:0.300:413,324:5:7	0/0:16,0:0.00:0:0:.:542,0:8:8
chr11	18871499	rs12799549	C	T	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.04;TLOD=34.54	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:8,14:0.550:6:8:0.571:282,452:4:4	0/0:23,1:0.053:0:1:1.00:793,32:11:12
chr11	18911283	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=32.50;TLOD=4.23	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:221,3:0.014:0:3:0.00:7524,96:93:128	0/0:116,0:0.00:0:0:.:3976,0:59:57
chr11	18956755	rs11024909	G	C	.	alt_allele_in_normal;germline_risk	DB;ECNT=2;HCNT=1;MAX_ED=1;MIN_ED=1;NLOD=1.22;TLOD=22.02	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:12,6:0.333:4:2:0.667:0|1:18956755_G_C:404,203:7:5	0/0:18,1:0.053:1:0:1.00:0|1:18956755_G_C:610,36:8:10
chr11	18956756	rs11024910	G	A	.	alt_allele_in_normal;germline_risk	DB;ECNT=2;HCNT=1;MAX_ED=1;MIN_ED=1;NLOD=1.22;TLOD=22.02	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:12,6:0.333:4:2:0.667:0|1:18956755_G_C:374,189:7:5	0/0:18,1:0.053:1:0:1.00:0|1:18956755_G_C:603,32:8:10
chr11	20382087	rs117341968	A	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=15.19	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:0,4:1.00:4:0:0.00:0,133:0:0	0/0:6,0:0.00:0:0:.:198,0:1:5
chr11	26591346	.	T	C	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=2;HCNT=4;MAX_ED=42;MIN_ED=42;NLOD=3.04;TLOD=4.95	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:41,4:0.059:4:0:1.00:1293,145:19:22	0/0:25,1:0.045:1:0:1.00:812,31:10:15
chr11	26591388	.	A	G	.	clustered_events;t_lod_fstar	ECNT=2;HCNT=6;MAX_ED=42;MIN_ED=42;NLOD=7.52;TLOD=4.59	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:28,2:0.077:2:0:0.00:930,67:8:20	0/0:27,0:0.00:0:0:.:893,0:14:13
chr11	26678552	rs12793773	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=19.97	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:3,6:0.667:3:3:0.500:100,196:1:2	0/0:4,0:0.00:0:0:.:138,0:2:2
chr11	26698288	rs12294769	G	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=26.65	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:5,8:0.615:6:2:0.750:184,266:2:3	0/0:5,0:0.00:0:0:.:182,0:1:4
chr11	28082772	.	TAAC	T	.	germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=16.91	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,4:0.800:3:1:.:33,130:1:0	0/0:7,0:0.00:0:0:.:224,0:2:5
chr11	28328030	.	T	A	.	PASS	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.42;TLOD=37.12	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:8,12:0.600:9:3:0.750:267,374:7:1	0/0:18,0:0.00:0:0:.:599,0:8:10
chr11	30012481	.	CTGG	C	.	str_contraction	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=15.02;RPA=5,4;RU=TGG;STR;TLOD=7.37	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:125,3:0.024:1:2:.:4245,106:61:64	0/0:66,1:0.015:0:1:.:2214,36:32:34
chr11	31426361	.	AT	A	.	alt_allele_in_normal;clustered_events;germline_risk	ECNT=2;HCNT=2;MAX_ED=25;MIN_ED=25;NLOD=1.70;RPA=10,9;RU=T;STR;TLOD=12.51	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:12,14:0.542:6:8:.:368,455:9:3	0/0:13,1:0.077:0:1:.:396,33:7:6
chr11	31426386	.	TA	T	.	clustered_events;germline_risk	ECNT=2;HCNT=2;MAX_ED=25;MIN_ED=25;NLOD=1.61;RPA=10,9;RU=A;STR;TLOD=7.97	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:5,8:0.615:3:5:.:150,259:4:1	0/0:7,0:0.00:0:0:.:213,0:4:3
chr11	32589422	rs201876	T	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.61;TLOD=8.53	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:5,3:0.375:1:2:0.333:168,94:1:4	0/0:12,0:0.00:0:0:.:398,0:8:4
chr11	33058861	rs112498700	G	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=16.69	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:6,5:0.455:2:3:0.400:205,176:4:2	0/0:5,0:0.00:0:0:.:181,0:1:4
chr11	33075721	rs7127111	T	C	.	clustered_events;germline_risk;homologous_mapping_event	DB;ECNT=3;HCNT=8;MAX_ED=72;MIN_ED=69;NLOD=2.11;TLOD=29.30	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,10:0.667:5:5:0.500:127,352:2:2	0/0:7,0:0.00:0:0:.:219,0:3:4
chr11	33075790	.	G	A	.	clustered_events;homologous_mapping_event	ECNT=3;HCNT=8;MAX_ED=72;MIN_ED=69;NLOD=2.71;TLOD=7.34	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:4,2:0.333:1:1:0.500:0|1:33075790_G_A:121,65:2:2	0/0:9,0:0.00:0:0:.:0|1:33075790_G_A:279,0:5:4
chr11	33075793	.	C	G	.	clustered_events;homologous_mapping_event	ECNT=3;HCNT=8;MAX_ED=72;MIN_ED=69;NLOD=2.71;TLOD=7.34	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:4,2:0.333:1:1:0.500:0|1:33075790_G_A:140,68:2:2	0/0:7,0:0.00:0:0:.:0|1:33075790_G_A:243,0:4:3
chr11	33085362	.	C	CTTTATAG	.	germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=11.63	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:3,3:0.500:1:2:.:102,108:3:0	0/0:4,0:0.00:0:0:.:142,0:2:2
chr11	33092364	.	A	AT	.	alt_allele_in_normal;germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.32;RPA=7,8;RU=T;STR;TLOD=8.90	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:10,7:0.412:2:5:.:328,226:5:5	0/0:11,1:0.091:1:0:.:367,34:3:8
chr11	33339237	rs3847592	A	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=51.22	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:14,15:0.517:8:7:0.467:442,529:9:5	0/0:5,0:0.00:0:0:.:156,0:5:0
chr11	33349005	rs426194	T	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=25.13	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,7:0.875:2:5:0.286:33,231:0:1	0/0:3,0:0.00:0:0:.:100,0:1:2
chr11	33559716	rs2281381	G	A	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=3;MAX_ED=.;MIN_ED=.;NLOD=0.771;TLOD=78.60	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:33,27:0.458:14:13:0.519:1153,834:20:13	0/0:26,2:0.074:2:0:1.00:873,64:13:13
chr11	33574577	rs2281379	T	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=11.73	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:11,4:0.267:2:2:0.500:338,136:3:8	0/0:6,0:0.00:0:0:.:186,0:2:4
chr11	33758617	rs1522086	A	T	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.34;TLOD=57.26	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:10,18:0.643:9:9:0.500:331,566:4:6	0/0:19,1:0.050:1:0:0.00:642,32:6:13
chr11	33768722	rs1915894	G	C	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.84;TLOD=60.78	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:17,18:0.529:12:6:0.667:609,624:8:9	0/0:20,1:0.053:1:0:1.00:720,34:7:13
chr11	33786976	.	AAG	A	.	germline_risk;str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;RPA=7,6;RU=AG;STR;TLOD=4.45	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:10,2:0.167:1:1:.:329,68:6:4	0/0:5,0:0.00:0:0:.:168,0:1:4
chr11	34162761	.	G	T	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=7.52;TLOD=4.03	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:54,2:0.041:2:0:1.00:1735,67:30:24	0/0:27,0:0.00:0:0:.:884,0:14:13
chr11	34511455	rs28395819	A	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.21;TLOD=54.23	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:12,16:0.571:6:10:0.625:364,549:8:4	0/0:13,0:0.00:0:0:.:389,0:7:6
chr11	35176485	rs4756195	A	G	.	clustered_events;germline_risk	DB;ECNT=2;HCNT=2;MAX_ED=76;MIN_ED=76;NLOD=1.50;TLOD=13.95	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,4:0.667:2:2:0.500:65,137:2:0	0/0:5,0:0.00:0:0:.:160,0:2:3
chr11	35176561	rs4756196	A	G	.	clustered_events;germline_risk	DB;ECNT=2;HCNT=2;MAX_ED=76;MIN_ED=76;NLOD=2.71;TLOD=28.99	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:13,10:0.409:4:6:0.600:412,348:7:6	0/0:10,0:0.00:0:0:.:290,0:4:6
chr11	35434905	rs675227	G	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.01;TLOD=42.89	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:7,12:0.632:6:6:0.500:244,426:5:2	0/0:10,0:0.00:0:0:.:345,0:5:5
chr11	44075676	rs178523	A	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.81;TLOD=28.40	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:15,9:0.375:3:6:0.667:489,310:6:9	0/0:16,0:0.00:0:0:.:519,0:9:7
chr11	44604847	rs12789262	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=14.69	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:6,5:0.455:2:3:0.400:215,156:2:4	0/0:4,0:0.00:0:0:.:140,0:2:2
chr11	44618371	rs2303863	C	T	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.19;TLOD=48.60	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:27,20:0.405:10:10:0.500:722,615:6:21	0/0:17,1:0.056:1:0:0.00:467,28:11:6
chr11	44619090	rs7107335	C	G	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.55;TLOD=120.29	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:67,45:0.404:22:23:0.511:2324,1540:27:40	0/0:66,5:0.067:2:3:0.600:2285,171:37:29
chr11	44938373	rs2306666	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=19.05	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:6,7:0.500:5:2:0.714:204,231:3:3	0/0:5,0:0.00:0:0:.:166,0:4:1
chr11	45234375	rs3740781	C	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.902;TLOD=16.73	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:3,6:0.714:2:4:0.667:92,193:1:2	0/0:4,0:0.00:0:0:.:124,0:0:4
chr11	46366318	rs1317826	A	G	.	PASS	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.71;TLOD=35.69	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:7,12:0.611:7:5:0.417:237,388:6:1	0/0:11,0:0.00:0:0:.:349,0:8:3
chr11	46679558	rs72912170	G	A	.	PASS	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=7.22;TLOD=80.99	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:19,27:0.568:7:20:0.259:662,890:6:13	0/0:24,0:0.00:0:0:.:806,0:12:12
chr11	46778229	.	A	C	.	alt_allele_in_normal	ECNT=1;HCNT=3;MAX_ED=.;MIN_ED=.;NLOD=6.16;TLOD=6.84	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:86,38:0.295:26:12:0.316:2166,257:38:48	0/0:48,8:0.151:4:4:0.500:1214,55:17:31
chr11	46873639	.	A	T	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.32;TLOD=4.18	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:45,2:0.043:0:2:1.00:1416,68:20:25	0/0:21,0:0.00:0:0:.:681,0:10:11
chr11	47179139	.	A	C	.	alt_allele_in_normal	ECNT=1;HCNT=6;MAX_ED=.;MIN_ED=.;NLOD=10.07;TLOD=7.11	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:398,111:0.171:69:42:0.378:11128,684:162:236	0/0:220,56:0.227:32:24:0.429:6116,344:88:132
chr11	47216249	.	G	T	.	t_lod_fstar	ECNT=1;HCNT=11;MAX_ED=.;MIN_ED=.;NLOD=27.93;TLOD=4.02	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:211,4:0.016:2:2:0.500:6254,125:107:104	0/0:98,0:0.00:0:0:.:2885,0:48:50
chr11	47424450	.	C	T	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=7.48;TLOD=4.09	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:43,2:0.049:1:1:0.500:1504,66:20:23	0/0:27,0:0.00:0:0:.:909,0:13:14
chr11	48991761	.	A	G	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=2;HCNT=3;MAX_ED=10;MIN_ED=10;NLOD=13.09;TLOD=6.02	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:100,3:0.029:2:1:0.333:0|1:48991761_A_G:3358,98:47:53	0/0:73,3:0.041:2:1:0.333:0|1:48991761_A_G:2454,99:41:32
chr11	48991771	.	G	A	.	clustered_events;multi_event_alt_allele_in_normal;t_lod_fstar	ECNT=2;HCNT=3;MAX_ED=10;MIN_ED=10;NLOD=16.27;TLOD=4.76	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:102,2:0.020:2:0:1.00:0|1:48991761_A_G:3493,65:48:54	0/0:74,1:0.014:1:0:1.00:0|1:48991761_A_G:2557,29:42:32
chr11	55319058	.	T	C	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=8.13;TLOD=4.28	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:35,2:0.054:1:1:0.500:1154,67:18:17	0/0:27,0:0.00:0:0:.:886,0:17:10
chr11	55886057	.	G	T	.	PASS	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.92;TLOD=8.11	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:15,3:0.167:1:2:0.333:420,102:7:8	0/0:23,0:0.00:0:0:.:644,0:14:9
chr11	56462670	.	C	T	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=12.03;TLOD=4.11	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:31,2:0.063:0:2:1.00:910,64:15:16	0/0:41,0:0.00:0:0:.:1198,0:19:22
chr11	57476731	.	C	A	.	t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=7.22;TLOD=4.10	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:26,2:0.077:0:2:1.00:739,62:14:12	0/0:25,0:0.00:0:0:.:769,0:11:14
chr11	57552213	.	CCA	C	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=8.47;RPA=7,6;RU=CA;STR;TLOD=5.93	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:36,3:0.077:0:3:.:1236,97:19:17	0/0:39,1:0.025:1:0:.:1268,34:13:26
chr11	57740246	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=13.24;TLOD=4.43	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:32,2:0.065:0:2:0.00:1097,67:18:14	0/0:49,0:0.00:0:0:.:1723,0:25:24
chr11	58203718	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=2;HCNT=12;MAX_ED=5;MIN_ED=5;NLOD=18.51;TLOD=12.05	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:234,5:0.022:1:4:0.200:8031,157:105:129	0/0:205,10:0.058:5:5:0.500:7004,315:94:111
chr11	58203723	rs11229279	G	A	.	clustered_events;t_lod_fstar	DB;ECNT=2;HCNT=8;MAX_ED=5;MIN_ED=5;NLOD=55.37;TLOD=4.35	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:231,3:0.014:1:2:0.333:7499,98:103:128	0/0:194,0:0.00:0:0:.:6332,0:89:105
chr11	59457135	rs1453544	A	G	.	t_lod_fstar	DB;ECNT=1;HCNT=8;MAX_ED=.;MIN_ED=.;NLOD=21.76;TLOD=4.06	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:82,2:0.024:1:1:0.500:2583,72:43:39	0/0:86,1:0.012:1:0:0.00:2699,36:51:35
chr11	60936312	.	GGGA	G	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=35.73;RPA=5,4;RU=GGA;STR;TLOD=5.99	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:109,3:0.027:1:2:.:3765,91:64:45	0/0:122,0:0.00:0:0:.:4108,0:52:70
chr11	61410828	.	C	T	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=7.82;TLOD=4.39	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:24,2:0.077:2:0:0.00:843,65:15:9	0/0:26,0:0.00:0:0:.:912,0:16:10
chr11	61419890	.	AC	A	.	alt_allele_in_normal;t_lod_fstar	ECNT=1;HCNT=16;MAX_ED=.;MIN_ED=.;NLOD=56.24;RPA=8,7;RU=C;STR;TLOD=4.64	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:240,10:0.037:4:6:.:7050,305:102:138	0/0:231,2:9.662e-03:1:1:.:6827,66:93:138
chr11	61637558	.	T	A	.	PASS	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=9.19;TLOD=6.32	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:43,3:0.065:2:1:0.667:1379,97:13:30	0/0:31,0:0.00:0:0:.:1017,0:20:11
chr11	62169472	rs11230945	C	T	.	germline_risk;t_lod_fstar	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=5.16	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:13,2:0.143:2:0:0.00:445,67:4:9	0/0:6,0:0.00:0:0:.:207,0:3:3
chr11	62516707	.	TTA	T	.	alt_allele_in_normal;str_contraction	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=22.19;RPA=7,6;RU=TA;STR;TLOD=17.23	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:153,12:0.038:5:7:.:4570,382:81:60	0/0:132,6:0.021:4:2:.:3912,189:65:56
chr11	62528558	.	A	G	.	alt_allele_in_normal;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=84.44;TLOD=4.93	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:398,5:0.013:1:4:0.800:12448,142:204:194	0/0:353,5:0.014:2:3:0.600:11087,172:175:178
chr11	63229733	.	T	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.51;TLOD=4.83	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:7,2:0.222:2:0:1.00:219,61:4:3	0/0:15,0:0.00:0:0:.:466,0:8:7
chr11	63658716	.	TTTG	T	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=14.09;RPA=5,4;RU=TTG;STR;TLOD=4.11	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:43,3:0.044:2:1:.:1398,101:20:23	0/0:47,0:0.00:0:0:.:1586,0:29:18
chr11	64200350	.	TTC	T	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=22.83;RPA=6,5;RU=TC;STR;TLOD=5.49	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:89,3:0.033:1:2:.:3047,105:49:40	0/0:78,0:0.00:0:0:.:2659,0:47:31
chr11	64315749	.	G	C	.	alt_allele_in_normal	ECNT=1;HCNT=6;MAX_ED=.;MIN_ED=.;NLOD=18.26;TLOD=12.41	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:174,9:0.041:6:3:0.667:5710,303:112:62	0/0:153,10:0.052:4:6:0.400:4978,353:84:69
chr11	64341843	.	GGTTGTGGTCTGAGGTCTTGGGCCATCAGTGATGTCACAACCAGATGGCCCAAGACCCCAGACCACAACCCCATGTCTGGT	G	.	alt_allele_in_normal	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=8.99;TLOD=21.70	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:49,10:0.183:5:5:.:1476,337:24:25	0/0:70,5:0.114:0:5:.:2132,171:32:38
chr11	65120775	.	GTCT	G	.	str_contraction	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=26.37;RPA=6,5;RU=TCT;STR;TLOD=16.14	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:148,7:0.041:3:4:.:5225,248:92:56	0/0:111,1:9.709e-03:0:1:.:3874,34:65:46
chr11	65551349	.	G	T	.	alt_allele_in_normal;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.42;TLOD=4.80	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:22,2:0.087:2:0:1.00:623,68:16:6	0/0:19,1:0.050:1:0:1.00:511,32:7:12
chr11	65864633	.	CCAGG	C	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=17.89;RPA=4,3;RU=CAGG;STR;TLOD=5.20	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:65,2:0.033:0:2:.:2178,70:38:27	0/0:65,0:0.00:0:0:.:2199,0:30:35
chr11	65887779	.	T	C	.	t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=17.41;TLOD=4.09	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:62,2:0.031:1:1:0.500:1975,70:31:31	0/0:58,0:0.00:0:0:.:1855,0:31:27
chr11	65945666	.	A	G	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=14.05;TLOD=4.33	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:52,2:0.041:1:1:0.500:1622,70:25:27	0/0:49,0:0.00:0:0:.:1496,0:18:31
chr11	66316425	.	C	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=16.85;TLOD=5.73	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:53,3:0.055:1:2:0.667:1793,95:24:29	0/0:59,0:0.00:0:0:.:2028,0:27:32
chr11	66625227	.	G	A	.	alt_allele_in_normal;t_lod_fstar	ECNT=1;HCNT=3;MAX_ED=.;MIN_ED=.;NLOD=90.22;TLOD=4.22	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:363,6:0.015:5:1:0.833:8319,154:171:192	0/0:354,2:6.042e-03:1:1:0.500:8351,64:162:192
chr11	66853406	.	A	G	.	alt_allele_in_normal;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.20;TLOD=5.03	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:155,18:0.088:8:10:0.556:4801,113:90:65	0/0:123,22:0.172:14:8:0.364:3955,159:78:45
chr11	67250607	.	AGAG	A	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=8.36;RPA=6,5;RU=GAG;STR;TLOD=5.58	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:39,2:0.051:0:2:.:1197,68:16:23	0/0:28,0:0.00:0:0:.:881,0:12:16
chr11	68019897	.	CCT	C	.	str_contraction	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.03;RPA=8,7;RU=CT;STR;TLOD=14.28	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:14,6:0.300:2:4:.:477,210:5:9	0/0:14,1:0.067:1:0:.:484,2:8:6
chr11	68021708	.	T	C	.	alt_allele_in_normal	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=41.47;TLOD=8.35	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:262,6:0.024:2:4:0.333:8384,188:115:147	0/0:233,9:0.040:4:5:0.444:7463,297:108:125
chr11	68807598	.	C	T	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=23.07;TLOD=5.69	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:85,4:0.041:0:4:1.00:2549,129:42:43	0/0:87,0:0.00:0:0:.:2608,0:41:46
chr11	69077151	.	G	A	.	germline_risk;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=5.39	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,2:0.400:0:2:0.00:121,59:0:4	0/0:4,0:0.00:0:0:.:100,0:0:4
chr11	69651347	rs7177	C	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=14.14	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:7,5:0.417:3:2:0.400:221,153:4:3	0/0:4,0:0.00:0:0:.:137,0:3:1
chr11	71662504	.	G	C	.	PASS	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=57.19;TLOD=6.40	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:220,5:0.026:3:2:0.600:7802,179:120:100	0/0:227,0:0.00:0:0:.:8060,0:129:98
chr11	76795628	.	CCTG	C	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=12.87;RPA=5,4;RU=CTG;STR;TLOD=5.07	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:76,2:0.031:2:0:.:2565,64:42:34	0/0:67,1:0.017:1:0:.:2306,33:42:25
chr11	82805656	.	C	CTT	.	t_lod_fstar	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=21.98;RPA=1,3;RU=T;STR;TLOD=4.95	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:84,2:0.025:0:2:.:2859,66:40:44	0/0:75,0:0.00:0:0:.:2601,0:28:47
chr11	82805928	.	A	G	.	clustered_events;homologous_mapping_event	ECNT=4;HCNT=1;MAX_ED=20;MIN_ED=10;NLOD=33.11;TLOD=12.19	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:126,7:0.042:0:7:1.00:0|1:82805928_A_G:4229,243:66:60	0/0:112,0:0.00:0:0:.:0|1:82805928_A_G:3725,0:48:64
chr11	82805938	.	T	C	.	clustered_events;homologous_mapping_event	ECNT=4;HCNT=1;MAX_ED=20;MIN_ED=10;NLOD=32.51;TLOD=12.27	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:120,6:0.044:0:6:0.00:0|1:82805928_A_G:3923,182:63:57	0/0:106,0:0.00:0:0:.:0|1:82805928_A_G:3398,0:45:61
chr11	82805947	.	A	G	.	clustered_events;homologous_mapping_event	ECNT=4;HCNT=1;MAX_ED=20;MIN_ED=10;NLOD=29.20;TLOD=7.62	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:108,2:0.029:0:2:1.00:0|1:82805928_A_G:3375,62:53:55	0/0:94,0:0.00:0:0:.:0|1:82805928_A_G:2935,0:37:57
chr11	82805948	.	C	T	.	clustered_events;homologous_mapping_event	ECNT=4;HCNT=1;MAX_ED=20;MIN_ED=10;NLOD=28.00;TLOD=7.64	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:107,1:0.030:0:1:1.00:0|1:82805928_A_G:3769,31:51:56	0/0:95,0:0.00:0:0:.:0|1:82805928_A_G:3302,0:38:57
chr11	86268594	.	C	CGT	.	alt_allele_in_normal;germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.47;RPA=16,17;RU=GT;STR;TLOD=12.19	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,34:0.711:9:3:.:50,344:1:1	0/0:23,14:0.230:2:1:.:647,79:13:10
chr11	89340246	rs16913141	G	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.66;TLOD=28.75	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:9,9:0.500:6:3:0.667:311,299:5:4	0/0:9,0:0.00:0:0:.:278,0:3:6
chr11	90071124	.	TTC	T	.	alt_allele_in_normal;str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=14.54;RPA=8,7;RU=TC;STR;TLOD=5.87	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:76,4:0.054:2:2:.:2548,134:37:39	0/0:85,3:0.038:1:2:.:2862,99:48:37
chr11	95050077	.	G	A	.	alt_allele_in_normal;t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=19.50;TLOD=4.32	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:86,4:0.044:2:2:0.500:2849,107:45:41	0/0:76,2:0.026:1:1:0.500:2507,56:41:35
chr11	95849669	.	C	T	.	alt_allele_in_normal;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=37.71;TLOD=4.42	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:147,5:0.036:1:4:0.800:5166,143:85:62	0/0:149,3:0.015:2:1:0.333:5278,69:76:73
chr11	95991350	.	GT	G	.	germline_risk	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=0.755;RPA=9,8;RU=T;STR;TLOD=7.80	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,5:0.455:2:3:.:0,173:0:0	0/0:3,0:0.00:0:0:.:34,0:1:0
chr11	102839976	rs476762	T	A	.	germline_risk;t_lod_fstar	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.41;TLOD=5.58	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:8,2:0.200:1:1:0.500:256,68:6:2	0/0:8,0:0.00:0:0:.:254,0:4:4
chr11	106094489	.	G	T	.	germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=9.48	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,3:0.750:2:1:0.667:36,96:0:1	0/0:4,0:0.00:0:0:.:137,0:3:1
chr11	107816015	.	TACAC	T	.	germline_risk;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.817;RPA=19,17;RU=AC;STR;TLOD=5.30	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:5,5:0.556:4:1:.:135,140:3:2	0/0:5,0:0.200:0:0:.:144,0:2:3
chr11	108172473	.	A	G	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=16.85;TLOD=4.08	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:84,2:0.027:1:1:0.500:2749,71:48:36	0/0:61,0:0.00:0:0:.:1962,0:33:28
chr11	108665137	.	TCGC	T	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=12.86;RPA=5,4;RU=CGC;STR;TLOD=5.37	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:50,2:0.041:0:2:.:1417,62:27:23	0/0:46,0:0.00:0:0:.:1324,0:21:25
chr11	111457524	rs79767908	C	T	.	germline_risk;t_lod_fstar	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=5.29	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:3,2:0.400:0:2:1.00:82,58:1:2	0/0:4,0:0.00:0:0:.:108,0:1:3
chr11	114187222	rs682155	A	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=6.85	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,2:0.500:2:0:0.00:63,71:1:1	0/0:4,0:0.00:0:0:.:133,0:2:2
chr11	115209591	.	ATGG	A	.	alt_allele_in_normal;germline_risk;str_contraction;t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.60;RPA=11,10;RU=TGG;STR;TLOD=5.76	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:37,4:0.098:4:0:.:1066,129:29:8	0/0:47,5:0.096:3:2:.:1316,141:24:23
chr11	117240024	rs650585	C	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=6.62	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,2:0.667:1:1:0.500:34,65:1:0	0/0:4,0:0.00:0:0:.:131,0:3:1
chr11	117291086	.	C	T	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=31.00;TLOD=4.23	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:106,3:0.028:2:1:0.333:3618,87:53:53	0/0:110,0:0.00:0:0:.:3747,0:52:58
chr11	117409806	.	A	C	.	alt_allele_in_normal;t_lod_fstar	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=24.73;TLOD=5.98	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:192,27:0.117:14:13:0.481:5026,174:85:107	0/0:194,23:0.114:12:11:0.478:5262,212:77:117
chr11	117524782	rs55642294	C	A	.	germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=12.24	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,4:0.500:3:1:0.250:138,129:2:2	0/0:5,0:0.00:0:0:.:164,0:2:3
chr11	118593676	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=9.33;TLOD=4.05	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:46,2:0.053:2:0:1.00:1584,65:27:19	0/0:33,0:0.00:0:0:.:1135,0:19:14
chr11	118627707	.	C	A	.	t_lod_fstar	ECNT=1;HCNT=15;MAX_ED=.;MIN_ED=.;NLOD=30.95;TLOD=5.12	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:116,3:0.026:0:3:1.00:3940,97:64:52	0/0:112,0:0.00:0:0:.:3771,0:49:63
chr11	119018675	.	GGGA	G	.	str_contraction	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=12.99;RPA=8,7;RU=GGA;STR;TLOD=11.93	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:63,5:0.074:2:3:.:1724,128:40:23	0/0:56,1:0.018:0:1:.:1509,28:30:26
chr11	119173109	.	CCT	C	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.40;RPA=6,5;RU=CT;STR;TLOD=4.94	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:10,2:0.167:1:1:.:316,69:5:5	0/0:18,0:0.00:0:0:.:619,0:7:11
chr11	119311855	.	C	T	.	t_lod_fstar	ECNT=1;HCNT=8;MAX_ED=.;MIN_ED=.;NLOD=47.20;TLOD=4.82	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:183,3:0.018:1:2:0.667:6158,99:100:83	0/0:168,0:0.00:0:0:.:5703,0:89:79
chr11	124010015	rs4936879	A	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=10.33	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:3,3:0.500:2:1:0.333:97,107:1:2	0/0:5,0:0.00:0:0:.:167,0:2:3
chr11	124016010	.	G	A	.	alt_allele_in_normal	ECNT=1;HCNT=6;MAX_ED=.;MIN_ED=.;NLOD=40.21;TLOD=12.20	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:264,10:0.038:5:5:0.500:8043,328:143:121	0/0:298,54:0.154:23:31:0.426:9031,1786:148:150
chr11	124224923	rs114725781	T	C	.	alt_allele_in_normal;clustered_events;germline_risk	DB;ECNT=5;HCNT=28;MAX_ED=111;MIN_ED=1;NLOD=1.13;TLOD=70.03	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:221,22:0.098:11:11:0.500:0|1:124224923_T_C:6987,749:114:107	0/0:211,13:0.066:8:5:0.615:0|1:124224923_T_C:6685,435:128:83
chr11	124224924	.	G	A	.	alt_allele_in_normal;clustered_events;germline_risk	ECNT=5;HCNT=28;MAX_ED=111;MIN_ED=1;NLOD=1.43;TLOD=70.03	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:220,23:0.098:12:11:0.522:0|1:124224923_T_C:7497,744:114:106	0/0:211,15:0.066:8:7:0.533:0|1:124224923_T_C:7264,479:127:84
chr11	124225012	.	AC	A	.	alt_allele_in_normal;clustered_events	ECNT=5;HCNT=35;MAX_ED=111;MIN_ED=1;NLOD=10.39;RPA=3,2;RU=C;STR;TLOD=38.05	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:195,18:0.077:7:11:.:0|1:124225012_AC_A:5874,543:106:89	0/0:199,13:0.055:3:10:.:0|1:124225012_AC_A:6047,384:114:85
chr11	124225018	.	A	T	.	alt_allele_in_normal;clustered_events	ECNT=5;HCNT=35;MAX_ED=111;MIN_ED=1;NLOD=8.01;TLOD=44.38	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:198,14:0.081:6:8:0.571:0|1:124225012_AC_A:6503,434:109:89	0/0:206,13:0.058:3:10:0.769:0|1:124225012_AC_A:6815,394:116:90
chr11	124225034	.	T	C	.	alt_allele_in_normal;clustered_events	ECNT=5;HCNT=35;MAX_ED=111;MIN_ED=1;NLOD=17.30;TLOD=31.13	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:196,10:0.056:4:6:0.400:0|1:124225012_AC_A:6585,315:104:92	0/0:199,10:0.048:3:7:0.300:0|1:124225012_AC_A:6662,345:107:92
chr11	124265668	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=2;HCNT=8;MAX_ED=8;MIN_ED=8;NLOD=16.57;TLOD=7.08	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:158,3:0.019:2:1:0.333:0|1:124265668_C_T:4917,99:83:75	0/0:126,5:0.047:2:3:0.600:0|1:124265668_C_T:3911,171:67:59
chr11	124265676	.	T	G	.	alt_allele_in_normal;clustered_events	ECNT=2;HCNT=8;MAX_ED=8;MIN_ED=8;NLOD=17.01;TLOD=7.20	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:146,3:0.021:2:1:0.667:0|1:124265668_C_T:4769,103:73:73	0/0:124,6:0.047:4:2:0.667:0|1:124265668_C_T:4102,214:68:56
chr11	125084164	.	C	A	.	t_lod_fstar	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=6.02;TLOD=4.26	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:22,2:0.083:1:1:0.500:751,63:16:6	0/0:20,0:0.00:0:0:.:680,0:16:4
chr11	125431296	.	AGAG	A	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=9.30;RPA=6,5;RU=GAG;STR;TLOD=4.47	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:41,2:0.049:2:0:.:1307,64:23:18	0/0:32,0:0.00:0:0:.:1061,0:15:17
chr11	125612783	.	CTG	C	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=10.51;RPA=7,6;RU=TG;STR;TLOD=5.45	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:39,4:0.075:3:1:.:1337,140:18:21	0/0:37,0:0.00:0:0:.:1318,0:15:22
chr11	126006064	.	GGA	G	.	str_contraction	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=11.10;RPA=5,4;RU=GA;STR;TLOD=7.20	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:32,3:0.097:1:2:.:1082,102:15:17	0/0:42,0:0.00:0:0:.:1443,0:17:25
chr11	126205742	.	G	T	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=9.33;TLOD=4.28	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:34,3:0.061:2:1:0.667:1079,98:17:17	0/0:38,0:0.00:0:0:.:1264,0:12:26
chr11	130188833	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=9.03;TLOD=4.21	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:23,2:0.087:1:1:0.500:681,62:14:9	0/0:31,0:0.00:0:0:.:976,0:14:17
chr12	1800999	.	ACTGG	A	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=11.14;RPA=4,3;RU=CTGG;STR;TLOD=5.54	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:41,3:0.049:1:2:.:1319,97:29:12	0/0:38,0:0.00:0:0:.:1215,0:23:15
chr12	1953157	.	TTGC	T	.	alt_allele_in_normal;str_contraction	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=5.49;RPA=9,8;RU=TGC;STR;TLOD=16.40	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:34,7:0.171:3:4:.:1138,227:17:17	0/0:39,2:0.049:0:2:.:1312,69:24:15
chr12	6018491	.	C	T	.	alt_allele_in_normal;germline_risk;t_lod_fstar	ECNT=2;HCNT=2;MAX_ED=1;MIN_ED=1;NLOD=1.86;TLOD=5.00	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:76,2:0.027:2:0:0.00:0|1:6018491_C_T:2554,62:36:40	0/0:66,6:0.075:3:3:0.500:0|1:6018491_C_T:2248,188:37:29
chr12	6018492	.	A	G	.	alt_allele_in_normal;germline_risk;t_lod_fstar	ECNT=2;HCNT=2;MAX_ED=1;MIN_ED=1;NLOD=1.86;TLOD=5.00	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:77,2:0.027:2:0:0.00:0|1:6018491_C_T:2453,68:37:40	0/0:65,6:0.075:3:3:0.500:0|1:6018491_C_T:2086,207:36:29
chr12	6354654	.	CCT	C	.	alt_allele_in_normal;str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.79;RPA=6,5;RU=CT;STR;TLOD=4.01	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:33,2:0.057:0:2:.:1091,66:13:20	0/0:43,3:0.065:2:1:.:1460,103:21:22
chr12	6389981	.	AAG	A	.	alt_allele_in_normal;germline_risk;str_contraction	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.96;RPA=8,7;RU=AG;STR;TLOD=8.48	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:11,4:0.267:3:1:.:363,137:6:5	0/0:16,1:0.059:1:0:.:524,34:7:9
chr12	6581004	.	AAAAC	A	.	alt_allele_in_normal;str_contraction;t_lod_fstar	ECNT=1;HCNT=8;MAX_ED=.;MIN_ED=.;NLOD=41.56;RPA=4,3;RU=AAAC;STR;TLOD=4.35	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:155,2:0.013:0:2:.:4984,59:86:69	0/0:154,2:0.013:2:0:.:4988,67:83:71
chr12	6602040	.	GCTT	G	.	alt_allele_in_normal;str_contraction	ECNT=1;HCNT=7;MAX_ED=.;MIN_ED=.;NLOD=5.99;RPA=6,5;RU=CTT;STR;TLOD=7.89	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:46,3:0.064:2:1:.:1537,104:24:22	0/0:48,2:0.040:1:1:.:1645,65:26:22
chr12	6869180	.	T	C	.	alt_allele_in_normal	ECNT=1;HCNT=9;MAX_ED=.;MIN_ED=.;NLOD=41.59;TLOD=16.94	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:381,8:0.039:1:7:0.125:12182,262:215:166	0/0:331,15:0.056:4:11:0.267:10708,481:172:159
chr12	6934365	.	GGT	G	.	str_contraction	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=10.39;RPA=6,5;RU=GT;STR;TLOD=6.39	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:46,3:0.065:1:2:.:1554,103:27:19	0/0:46,1:0.021:1:0:.:1579,35:19:27
chr12	7067792	.	AAG	A	.	alt_allele_in_normal;str_contraction;t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=5.66;RPA=7,6;RU=AG;STR;TLOD=5.58	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:53,3:0.057:1:2:.:1748,102:34:19	0/0:64,4:0.062:1:3:.:2143,138:31:33
chr12	7368967	.	TGA	T	.	alt_allele_in_normal;str_contraction;triallelic_site	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.22;RPA=12,11;RU=GA;STR;TLOD=7.09	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:23,13:0.224:6:3:.:672,294:10:13	0/0:30,4:0.046:2:2:.:982,131:12:18
chr12	8047961	.	ACAG	A	.	alt_allele_in_normal;germline_risk;str_contraction	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=2.03;RPA=7,6;RU=CAG;STR;TLOD=11.47	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:36,4:0.103:1:3:.:1134,100:14:22	0/0:52,4:0.071:2:2:.:1571,97:22:30
chr12	8125661	.	C	T	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=17.76;TLOD=5.49	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:58,4:0.052:1:3:0.750:2015,126:33:25	0/0:66,0:0.00:0:0:.:2340,0:38:28
chr12	8227814	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=2;HCNT=2;MAX_ED=4;MIN_ED=4;NLOD=9.35;TLOD=7.68	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:102,3:0.031:2:1:0.667:0|1:8227814_G_A:3419,94:52:50	0/0:89,5:0.044:1:4:0.200:0|1:8227814_G_A:2998,156:44:45
chr12	8227818	.	G	C	.	alt_allele_in_normal;clustered_events	ECNT=2;HCNT=2;MAX_ED=4;MIN_ED=4;NLOD=7.89;TLOD=7.70	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:98,3:0.031:2:1:0.667:0|1:8227814_G_A:3373,104:51:47	0/0:84,4:0.045:1:3:0.250:0|1:8227814_G_A:2896,141:44:40
chr12	8359017	.	T	C	.	alt_allele_in_normal;clustered_events;germline_risk	ECNT=3;HCNT=4;MAX_ED=21;MIN_ED=3;NLOD=0.918;TLOD=13.39	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:18,4:0.174:1:3:0.250:0|1:8359017_T_C:577,127:11:7	0/0:15,1:0.056:1:0:1.00:0|1:8359017_T_C:490,30:6:9
chr12	8359020	.	A	G	.	alt_allele_in_normal;clustered_events;germline_risk	ECNT=3;HCNT=4;MAX_ED=21;MIN_ED=3;NLOD=0.918;TLOD=13.47	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:19,4:0.182:1:3:0.750:0|1:8359017_T_C:619,111:12:7	0/0:17,1:0.056:1:0:0.00:0|1:8359017_T_C:552,34:6:11
chr12	8359038	.	A	G	.	alt_allele_in_normal;clustered_events;germline_risk	ECNT=3;HCNT=4;MAX_ED=21;MIN_ED=3;NLOD=1.54;TLOD=13.14	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:24,6:0.207:1:5:0.833:750,210:14:10	0/0:19,1:0.053:1:0:0.00:589,37:7:12
chr12	8359154	.	C	G	.	alt_allele_in_normal;clustered_events;germline_risk	ECNT=2;HCNT=4;MAX_ED=8;MIN_ED=8;NLOD=1.82;TLOD=20.68	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:21,6:0.214:2:4:0.667:0|1:8359154_C_G:612,194:13:8	0/0:19,1:0.048:0:1:1.00:0|1:8359154_C_G:573,34:7:12
chr12	8359162	.	C	T	.	alt_allele_in_normal;clustered_events;germline_risk	ECNT=2;HCNT=4;MAX_ED=8;MIN_ED=8;NLOD=2.12;TLOD=21.02	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:19,6:0.240:2:4:0.667:0|1:8359154_C_G:674,180:12:7	0/0:21,1:0.045:0:1:1.00:0|1:8359154_C_G:748,30:8:13
chr12	8843049	.	G	T	.	t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=5.97;TLOD=4.32	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:14,2:0.125:1:1:0.500:485,60:6:8	0/0:20,0:0.00:0:0:.:657,0:12:8
chr12	8847635	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=57.72;TLOD=5.56	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:250,4:0.018:3:1:0.750:7757,124:133:117	0/0:209,0:0.00:0:0:.:6536,0:111:98
chr12	8868422	.	TTG	T	.	alt_allele_in_normal;str_contraction	ECNT=1;HCNT=8;MAX_ED=.;MIN_ED=.;NLOD=17.09;RPA=7,6;RU=TG;STR;TLOD=14.97	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:97,9:0.045:6:3:.:2874,306:50:37	0/0:109,5:0.023:4:1:.:3316,170:58:43
chr12	9302145	.	T	C	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.82;TLOD=6.13	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:8,3:0.273:1:2:0.333:249,96:5:3	0/0:16,0:0.00:0:0:.:526,0:9:7
chr12	9311675	.	C	CGTT	.	clustered_events;homologous_mapping_event	ECNT=3;HCNT=4;MAX_ED=79;MIN_ED=78;NLOD=25.62;TLOD=13.02	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:119,3:0.020:3:0:.:3749,82:66:52	0/0:103,0:4.902e-03:0:0:.:3275,0:60:43
chr12	9311753	.	A	C	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=3;HCNT=8;MAX_ED=79;MIN_ED=78;NLOD=25.92;TLOD=4.56	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:132,2:0.016:0:2:1.00:0|1:9311753_A_C:4337,68:80:52	0/0:128,4:0.033:2:2:0.500:0|1:9311753_A_C:4211,134:71:57
chr12	9311754	.	G	C	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=3;HCNT=8;MAX_ED=79;MIN_ED=78;NLOD=25.92;TLOD=4.56	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:131,2:0.016:0:2:0.00:0|1:9311753_A_C:4503,54:79:52	0/0:127,4:0.033:2:2:0.500:0|1:9311753_A_C:4371,107:70:57
chr12	9430690	.	A	G	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.35;TLOD=5.07	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:21,3:0.130:1:2:0.667:689,101:10:11	0/0:33,1:0.029:0:1:1.00:1064,34:14:19
chr12	10449382	.	T	G	.	alt_allele_in_normal	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=48.21;TLOD=10.10	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:250,7:0.026:5:2:0.714:8062,227:133:117	0/0:219,4:0.020:4:0:1.00:7140,136:105:114
chr12	12912611	.	A	G	.	t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=13.20;TLOD=4.08	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:31,2:0.061:2:0:0.00:1000,64:15:16	0/0:44,0:0.00:0:0:.:1445,0:23:21
chr12	12942535	rs4763307	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=9.72	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:3,3:0.500:2:1:0.667:102,101:2:1	0/0:7,0:0.00:0:0:.:247,0:3:4
chr12	13085109	.	T	C	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=9.93;TLOD=4.23	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:45,3:0.067:1:2:0.333:1321,72:25:20	0/0:34,0:0.00:0:0:.:987,0:11:23
chr12	14621186	.	C	CCACCATGTACGCAT	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=26.47;RPA=1,2;RU=CACCATGTACGCAT;STR;TLOD=4.83	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:105,1:0.023:0:1:.:3568,35:64:41	0/0:97,0:0.00:0:0:.:3353,0:56:41
chr12	15217389	.	C	CCA	.	alt_allele_in_normal;t_lod_fstar;triallelic_site	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.39;RPA=6,7;RU=CA;STR;TLOD=5.18	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:95,4:0.020:0:4:.:3063,135:38:54	0/0:75,6:0.032:1:5:.:2476,200:31:43
chr12	15660534	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=8.73;TLOD=4.43	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:26,2:0.071:0:2:0.00:858,66:18:8	0/0:29,0:0.00:0:0:.:1008,0:13:16
chr12	16400934	.	T	C	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=14.14;TLOD=4.05	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:80,2:0.027:2:0:1.00:2717,71:45:35	0/0:48,0:0.00:0:0:.:1631,0:25:23
chr12	16514454	rs10846374	C	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.87;TLOD=8.27	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:11,3:0.214:1:2:0.667:385,100:7:4	0/0:14,0:0.00:0:0:.:449,0:4:10
chr12	18381738	.	CTG	C	.	alt_allele_in_normal;str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=9.11;RPA=7,6;RU=TG;STR;TLOD=4.70	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:63,3:0.046:2:1:.:2108,89:36:27	0/0:51,2:0.038:1:1:.:1771,72:32:19
chr12	21164876	rs4149033	A	G	.	germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=32.51	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,9:0.692:6:3:0.333:136,317:1:3	0/0:6,0:0.00:0:0:.:206,0:4:2
chr12	24584341	.	A	C	.	clustered_events	ECNT=2;HCNT=1;MAX_ED=4;MIN_ED=4;NLOD=2.72;TLOD=8.65	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:6,3:0.333:0:3:1.00:0|1:24584341_A_C:176,79:2:4	0/0:9,0:0.00:0:0:.:0|1:24584341_A_C:211,0:2:7
chr12	24584345	.	T	C	.	clustered_events	ECNT=2;HCNT=1;MAX_ED=4;MIN_ED=4;NLOD=2.42;TLOD=8.65	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:5,3:0.333:0:3:0.00:0|1:24584341_A_C:153,87:1:4	0/0:8,0:0.00:0:0:.:0|1:24584341_A_C:229,0:2:6
chr12	27797924	.	C	T	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=14.10;TLOD=4.06	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:46,2:0.043:0:2:1.00:1439,67:23:23	0/0:48,0:0.00:0:0:.:1492,0:25:23
chr12	29751841	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.12;TLOD=4.19	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:19,3:0.095:2:1:0.667:638,93:12:7	0/0:17,0:0.00:0:0:.:583,0:10:7
chr12	31094885	.	A	G	.	alt_allele_in_normal	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.35;TLOD=10.32	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:40,5:0.111:2:3:0.600:1328,167:20:20	0/0:26,2:0.071:1:1:0.500:853,69:11:15
chr12	38685634	.	GCAAAA	G	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=13.44;RPA=3,2;RU=CAAAA;STR;TLOD=5.26	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:63,3:0.036:0:3:.:2167,105:29:34	0/0:45,0:0.00:0:0:.:1514,0:24:21
chr12	41437922	.	GCT	G	.	alt_allele_in_normal;str_contraction;t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=40.29;RPA=6,5;RU=CT;STR;TLOD=4.33	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:247,5:9.153e-03:1:2:.:8593,77:135:112	0/0:194,3:8.523e-03:2:1:.:6806,109:98:96
chr12	42119136	.	T	A	.	alt_allele_in_normal	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=8.17;TLOD=8.16	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:71,3:0.044:1:2:0.333:2316,96:35:36	0/0:74,7:0.080:3:4:0.429:2384,238:34:40
chr12	42387662	.	T	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=26.64	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,8:0.800:4:4:0.500:59,250:1:1	0/0:7,0:0.00:0:0:.:231,0:2:5
chr12	46788622	.	AAC	A	.	alt_allele_in_normal;str_contraction	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=14.15;RPA=7,6;RU=AC;STR;TLOD=13.53	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:85,8:0.082:3:5:.:2850,267:39:46	0/0:70,2:0.029:2:0:.:2349,55:41:29
chr12	47982354	rs2276455	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=25.38	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,8:0.667:5:3:0.625:119,254:3:1	0/0:4,0:0.00:0:0:.:137,0:2:2
chr12	47982663	.	CATGTT	C	.	clustered_events	ECNT=2;HCNT=2;MAX_ED=7;MIN_ED=7;NLOD=2.71;TLOD=9.28	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:8,3:0.273:1:2:.:0|1:47982663_CATGTT_C:279,94:4:4	0/0:9,0:0.00:0:0:.:0|1:47982663_CATGTT_C:306,0:4:5
chr12	47982670	.	A	G	.	clustered_events	ECNT=2;HCNT=2;MAX_ED=7;MIN_ED=7;NLOD=2.71;TLOD=9.28	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:7,2:0.273:1:1:0.500:0|1:47982663_CATGTT_C:224,58:4:3	0/0:9,0:0.00:0:0:.:0|1:47982663_CATGTT_C:283,0:4:5
chr12	48525876	.	T	C	.	t_lod_fstar	ECNT=2;HCNT=2;MAX_ED=1;MIN_ED=1;NLOD=17.76;TLOD=4.60	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:118,2:0.017:2:0:1.00:0|1:48525876_T_C:3881,69:65:53	0/0:63,0:0.00:0:0:.:0|1:48525876_T_C:2048,0:37:26
chr12	48525877	.	G	A	.	t_lod_fstar	ECNT=2;HCNT=2;MAX_ED=1;MIN_ED=1;NLOD=17.76;TLOD=4.60	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:119,2:0.017:2:0:1.00:0|1:48525876_T_C:4103,66:66:53	0/0:62,0:0.00:0:0:.:0|1:48525876_T_C:2132,0:37:25
chr12	49186488	.	GGGA	G	.	str_contraction	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=11.46;RPA=4,3;RU=GGA;STR;TLOD=10.96	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:83,4:0.046:2:2:.:2771,134:50:33	0/0:39,0:0.00:0:0:.:1330,0:20:19
chr12	50134294	.	C	CCTT	.	germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=7.79	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,2:0.500:0:2:.:68,68:0:2	0/0:6,0:0.00:0:0:.:199,0:4:2
chr12	50625850	.	TC	T	.	alt_allele_in_normal	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.87;RPA=9,8;RU=C;STR;TLOD=15.56	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:9,11:0.550:4:7:.:294,360:5:4	0/0:16,1:0.059:0:1:.:527,35:8:8
chr12	50686091	rs2684889	A	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=13.40	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,4:0.800:3:1:0.250:33,126:0:1	0/0:4,0:0.00:0:0:.:133,0:3:1
chr12	50813921	rs829112	A	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=10.26	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,3:0.429:3:0:0.00:127,109:2:2	0/0:6,0:0.00:0:0:.:189,0:3:3
chr12	51010684	rs427020	C	T	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.94;TLOD=37.47	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:17,14:0.464:11:3:0.214:546,430:10:7	0/0:20,1:0.053:1:0:0.00:635,33:7:13
chr12	51241020	.	C	T	.	alt_allele_in_normal	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=14.34;TLOD=7.60	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:213,6:0.031:5:1:0.167:6580,196:117:96	0/0:89,4:0.047:3:1:0.250:2799,128:45:44
chr12	51790487	rs303815	T	C	.	alt_allele_in_normal	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.54;TLOD=19.75	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:27,8:0.226:6:2:0.750:829,269:13:14	0/0:25,1:0.040:0:1:0.00:764,35:13:12
chr12	52015212	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.32;TLOD=4.18	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:29,2:0.067:1:1:0.500:851,64:17:12	0/0:8,0:0.00:0:0:.:203,0:2:6
chr12	52287632	.	T	C	.	alt_allele_in_normal;clustered_events;germline_risk	ECNT=2;HCNT=5;MAX_ED=21;MIN_ED=21;NLOD=0.609;TLOD=120.44	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:49,38:0.494:18:20:0.474:1634,1294:25:24	0/0:44,8:0.111:4:4:0.500:1464,289:21:23
chr12	52287653	.	A	G	.	alt_allele_in_normal;clustered_events	ECNT=2;HCNT=2;MAX_ED=21;MIN_ED=21;NLOD=6.19;TLOD=95.46	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:46,32:0.457:13:19:0.594:1462,1028:23:23	0/0:49,4:0.082:3:1:0.250:1561,138:22:27
chr12	52287749	rs7300941	T	C	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.78;TLOD=44.95	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:25,16:0.405:11:5:0.688:821,529:14:11	0/0:37,2:0.057:2:0:1.00:1194,62:12:25
chr12	52305635	.	A	G	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.12;TLOD=4.47	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:50,3:0.063:1:2:0.667:1672,101:22:28	0/0:18,0:0.00:0:0:.:608,0:7:11
chr12	52319029	rs998821	A	G	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.24;TLOD=47.82	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:15,15:0.469:9:6:0.400:501,505:4:11	0/0:19,1:0.048:1:0:0.00:630,36:10:9
chr12	52344327	rs1791639	T	C	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.14;TLOD=57.53	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:30,23:0.438:14:9:0.609:939,679:16:14	0/0:19,1:0.050:0:1:0.00:606,34:10:9
chr12	52362294	.	C	G	.	clustered_events;t_lod_fstar	ECNT=2;HCNT=1;MAX_ED=8;MIN_ED=8;NLOD=31.01;TLOD=5.19	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:203,1:0.016:1:0:0.00:0|1:52362294_C_G:6680,22:96:107	0/0:113,0:0.00:0:0:.:0|1:52362294_C_G:3694,0:62:51
chr12	52362302	.	A	G	.	clustered_events;t_lod_fstar	ECNT=2;HCNT=1;MAX_ED=8;MIN_ED=8;NLOD=32.21;TLOD=5.18	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:213,3:0.016:2:1:0.333:0|1:52362294_C_G:6986,83:98:115	0/0:117,0:0.00:0:0:.:0|1:52362294_C_G:3793,0:61:56
chr12	52363129	rs10876280	C	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.71;TLOD=25.21	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:7,8:0.533:4:4:0.500:234,259:4:3	0/0:9,0:0.00:0:0:.:315,0:3:6
chr12	52397156	rs2249384	C	T	.	germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=2.71;TLOD=12.50	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,4:0.500:1:3:0.750:115,130:1:3	0/0:9,0:0.00:0:0:.:257,0:5:4
chr12	52405635	rs56097932	T	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.91;TLOD=18.56	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:8,7:0.467:3:4:0.429:254,204:3:5	0/0:13,0:0.00:0:0:.:425,0:9:4
chr12	52548052	.	C	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=9.59;TLOD=4.03	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:50,2:0.041:2:0:0.00:1724,67:27:23	0/0:32,0:0.00:0:0:.:1109,0:17:15
chr12	52570941	.	G	C	.	germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=15.91	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:8,6:0.429:4:2:0.667:265,172:3:5	0/0:6,0:0.00:0:0:.:195,0:3:3
chr12	52591359	.	T	TACACAC	.	germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.52;RPA=7,10;RU=AC;STR;TLOD=12.71	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:5,4:0.444:4:0:.:159,128:4:1	0/0:5,0:0.00:0:0:.:161,0:4:1
chr12	52646627	rs2232559	T	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.31;TLOD=56.87	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:10,17:0.630:8:9:0.471:330,565:6:4	0/0:11,0:0.00:0:0:.:361,0:8:3
chr12	52680186	.	TACC	T	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.90;RPA=5,4;RU=ACC;STR;TLOD=5.55	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:38,2:0.050:1:1:.:1237,67:19:19	0/0:13,0:0.00:0:0:.:429,0:5:8
chr12	52897394	.	G	C	.	clustered_events;homologous_mapping_event;t_lod_fstar	ECNT=3;HCNT=8;MAX_ED=88;MIN_ED=26;NLOD=10.83;TLOD=4.38	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:77,3:0.043:2:1:0.667:2663,85:37:40	0/0:38,0:0.00:0:0:.:1303,0:18:20
chr12	52897420	.	G	A	.	clustered_events;homologous_mapping_event;t_lod_fstar	ECNT=3;HCNT=8;MAX_ED=88;MIN_ED=26;NLOD=13.44;TLOD=4.95	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:98,3:0.034:2:1:0.667:2873,92:45:53	0/0:51,0:0.00:0:0:.:1411,0:21:30
chr12	52897482	.	G	A	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=3;HCNT=8;MAX_ED=88;MIN_ED=26;NLOD=7.69;TLOD=5.55	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:89,4:0.037:4:0:1.00:2901,131:46:43	0/0:53,2:0.039:0:2:0.00:1720,67:22:31
chr12	52949315	.	G	A	.	alt_allele_in_normal;t_lod_fstar	ECNT=1;HCNT=9;MAX_ED=.;MIN_ED=.;NLOD=14.71;TLOD=5.22	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:119,4:0.017:2:0:1.00:3819,65:61:58	0/0:78,4:0.025:0:2:0.00:2452,66:46:32
chr12	52950348	.	C	T	.	alt_allele_in_normal;clustered_events;germline_risk	ECNT=3;HCNT=2;MAX_ED=65;MIN_ED=62;NLOD=1.67;TLOD=11.71	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:901,9:7.624e-03:5:4:0.444:31358,272:476:425	0/0:432,41:0.092:20:21:0.512:15276,1287:229:203
chr12	52950410	.	A	ACT	.	alt_allele_in_normal;clustered_events	ECNT=3;HCNT=2;MAX_ED=65;MIN_ED=62;NLOD=65.34;TLOD=10.72	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:410,4:0.012:2:2:.:0|1:52950410_A_ACT:13599,113:249:161	0/0:229,8:0.053:5:3:.:0|1:52950410_A_ACT:7605,242:128:101
chr12	52950413	.	A	G	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=3;HCNT=2;MAX_ED=65;MIN_ED=62;NLOD=62.93;TLOD=5.85	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:383,3:7.595e-03:1:2:0.667:0|1:52950410_A_ACT:12505,89:230:153	0/0:218,3:0.026:2:1:0.333:0|1:52950410_A_ACT:7165,101:124:94
chr12	53290835	rs61754164	A	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.31;TLOD=31.43	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:14,12:0.462:7:5:0.417:454,335:6:8	0/0:12,0:0.00:0:0:.:389,0:8:4
chr12	53293603	rs1056692	A	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=10.93	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:0,3:1.00:1:2:0.667:0,95:0:0	0/0:4,0:0.00:0:0:.:134,0:4:0
chr12	53315284	.	T	C	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.72;TLOD=4.35	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:33,2:0.059:1:1:0.500:1023,67:15:18	0/0:20,0:0.00:0:0:.:617,0:11:9
chr12	54371178	rs2244933	G	T	.	alt_allele_in_normal;clustered_events;germline_risk	DB;ECNT=2;HCNT=2;MAX_ED=43;MIN_ED=43;NLOD=1.94;TLOD=65.52	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:17,20:0.541:10:10:0.500:587,672:9:8	0/0:18,1:0.053:1:0:1.00:596,33:10:8
chr12	54371221	.	TCTAA	T	.	clustered_events;str_contraction	ECNT=2;HCNT=2;MAX_ED=43;MIN_ED=43;NLOD=3.61;RPA=2,1;RU=CTAA;STR;TLOD=34.94	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:8,9:0.529:5:4:.:260,293:6:2	0/0:12,0:0.00:0:0:.:396,0:7:5
chr12	54582082	.	C	T	.	PASS	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=8.13;TLOD=12.62	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:44,5:0.104:1:4:0.800:1510,172:27:17	0/0:28,0:0.00:0:0:.:979,0:15:13
chr12	54854838	rs10876637	T	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=7.32	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,2:0.667:1:1:0.500:32,72:0:1	0/0:4,0:0.00:0:0:.:124,0:3:1
chr12	55221948	.	A	G	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=7.52;TLOD=4.19	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:59,3:0.035:3:0:0.00:1965,107:22:37	0/0:26,0:0.00:0:0:.:878,0:8:18
chr12	55580540	rs10876818	C	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.01;TLOD=21.73	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:9,7:0.467:2:5:0.714:326,231:6:3	0/0:11,0:0.00:0:0:.:393,0:5:6
chr12	55685026	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.21;TLOD=4.63	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:24,3:0.080:2:1:0.667:799,100:14:10	0/0:15,0:0.00:0:0:.:521,0:8:7
chr12	55728304	.	A	G	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.82;TLOD=4.07	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:34,2:0.067:2:0:0.00:1077,63:16:18	0/0:18,0:0.00:0:0:.:586,0:8:10
chr12	56137491	.	T	C	.	t_lod_fstar	ECNT=1;HCNT=8;MAX_ED=.;MIN_ED=.;NLOD=49.05;TLOD=4.50	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:412,3:8.287e-03:2:1:0.667:13777,106:239:173	0/0:183,0:0.00:0:0:.:6132,0:93:90
chr12	56475495	rs937115	T	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.01;TLOD=35.63	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:8,11:0.579:5:6:0.455:265,360:6:2	0/0:10,0:0.00:0:0:.:337,0:4:6
chr12	56861351	rs4759035	G	A	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.44;TLOD=42.04	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:10,13:0.565:6:7:0.462:353,429:4:6	0/0:17,1:0.056:0:1:0.00:568,35:10:7
chr12	56924119	rs7314055	A	G	.	germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=14.85	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:13,5:0.278:3:2:0.400:415,171:8:5	0/0:7,0:0.00:0:0:.:221,0:4:3
chr12	57004312	.	C	T	.	t_lod_fstar	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=30.46;TLOD=4.20	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:208,3:0.015:0:3:1.00:6504,95:119:89	0/0:105,0:0.00:0:0:.:3178,0:59:46
chr12	57046941	.	CAG	C	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=9.31;RPA=5,4;RU=AG;STR;TLOD=4.04	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:55,2:0.039:0:2:.:1949,68:23:32	0/0:35,0:0.00:0:0:.:1214,0:20:15
chr12	57064176	rs17546579	T	C	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.64;TLOD=60.43	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:11,23:0.690:10:13:0.435:360,689:4:7	0/0:22,1:0.050:0:1:0.00:723,29:10:12
chr12	57233934	rs34095989	G	A	.	PASS	DB;ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=9.12;TLOD=120.15	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:35,40:0.542:23:17:0.575:1150,1253:20:15	0/0:42,1:0.023:1:0:1.00:1392,33:23:19
chr12	57280421	.	TTGC	T	.	str_contraction	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=17.95;RPA=6,5;RU=TGC;STR;TLOD=12.96	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:85,5:0.056:3:2:.:2832,170:50:35	0/0:62,0:0.00:0:0:.:2068,0:34:28
chr12	57465648	rs2228225	G	A	.	alt_allele_in_normal	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.45;TLOD=79.32	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:31,26:0.464:16:10:0.615:1072,847:14:17	0/0:21,1:0.050:0:1:0.00:731,31:14:7
chr12	57630843	rs703832	G	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.80;TLOD=6.39	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:3,2:0.400:2:0:1.00:85,69:2:1	0/0:6,0:0.00:0:0:.:168,0:4:2
chr12	57695904	.	CCCT	C	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=9.56;RPA=6,5;RU=CCT;STR;TLOD=6.11	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:111,3:0.027:3:0:.:3839,101:58:53	0/0:33,0:0.00:0:0:.:1127,0:17:16
chr12	57732451	rs17852479	C	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.06;TLOD=18.54	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:10,7:0.467:4:3:0.429:333,204:6:4	0/0:8,0:0.00:0:0:.:239,0:3:5
chr12	58244544	rs61938471	C	T	.	clustered_events;germline_risk	DB;ECNT=2;HCNT=1;MAX_ED=21;MIN_ED=21;NLOD=1.51;TLOD=24.08	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:4,6:0.600:3:3:0.500:0|1:58244544_C_T:141,199:1:3	0/0:5,0:0.00:0:0:.:0|1:58244544_C_T:173,0:3:2
chr12	58244565	rs61938472	C	T	.	clustered_events;germline_risk	DB;ECNT=2;HCNT=1;MAX_ED=21;MIN_ED=21;NLOD=1.50;TLOD=28.12	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:3,7:0.700:3:4:0.571:0|1:58244544_C_T:96,238:1:2	0/0:6,0:0.00:0:0:.:0|1:58244544_C_T:193,0:3:3
chr12	62021593	rs11836487	C	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.57;TLOD=29.83	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:12,10:0.455:6:4:0.400:398,319:10:2	0/0:11,1:0.083:0:1:1.00:326,2:7:4
chr12	62384284	rs2044846	A	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.86;TLOD=31.29	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:20,13:0.367:9:4:0.308:617,415:10:10	0/0:13,0:0.00:0:0:.:376,0:8:5
chr12	62494949	rs7135893	C	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=38.99	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,11:0.846:5:6:0.545:66,368:0:2	0/0:6,0:0.00:0:0:.:197,0:4:2
chr12	62592840	rs12357	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.21;TLOD=35.22	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:11,11:0.500:4:7:0.364:394,366:6:5	0/0:14,0:0.00:0:0:.:491,0:8:6
chr12	63004247	.	A	C	.	alt_allele_in_normal	ECNT=1;HCNT=16;MAX_ED=.;MIN_ED=.;NLOD=3.25;TLOD=108.09	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:34,32:0.492:14:18:0.563:1123,1125:18:16	0/0:35,2:0.056:2:0:0.00:1169,68:17:18
chr12	63823162	.	A	G	.	alt_allele_in_normal;clustered_events	ECNT=6;HCNT=7;MAX_ED=116;MIN_ED=88;NLOD=9.55;TLOD=10.46	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:88,6:0.065:3:3:0.500:2936,211:35:53	0/0:60,2:0.034:2:0:0.00:1977,72:25:35
chr12	63823250	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=6;HCNT=11;MAX_ED=116;MIN_ED=88;NLOD=13.29;TLOD=26.43	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:172,8:0.060:4:4:0.500:0|1:63823250_C_T:5707,262:82:90	0/0:91,3:0.034:1:2:0.667:0|1:63823250_C_T:3123,95:39:52
chr12	63823256	.	A	T	.	alt_allele_in_normal;clustered_events	ECNT=6;HCNT=11;MAX_ED=116;MIN_ED=88;NLOD=12.69;TLOD=26.24	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:169,10:0.057:4:6:0.600:0|1:63823250_C_T:5243,319:78:91	0/0:83,3:0.034:1:2:0.667:0|1:63823250_C_T:2653,97:34:49
chr12	63823265	.	G	T	.	alt_allele_in_normal;clustered_events	ECNT=6;HCNT=11;MAX_ED=116;MIN_ED=88;NLOD=11.18;TLOD=26.40	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:169,10:0.060:4:6:0.400:0|1:63823250_C_T:5000,332:75:94	0/0:85,3:0.037:1:2:0.333:0|1:63823250_C_T:2610,99:36:49
chr12	63823277	.	T	C	.	alt_allele_in_normal;clustered_events	ECNT=6;HCNT=11;MAX_ED=116;MIN_ED=88;NLOD=19.08;TLOD=25.54	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:176,13:0.079:5:8:0.385:0|1:63823277_T_C:5674,446:74:102	0/0:96,3:0.033:0:3:0.00:0|1:63823277_T_C:3111,102:39:57
chr12	63823278	.	A	C	.	alt_allele_in_normal;clustered_events	ECNT=6;HCNT=11;MAX_ED=116;MIN_ED=88;NLOD=19.08;TLOD=25.54	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:179,13:0.079:5:8:0.615:0|1:63823277_T_C:5588,449:75:104	0/0:95,3:0.033:0:3:1.00:0|1:63823277_T_C:2981,100:39:56
chr12	63823328	.	G	C	.	alt_allele_in_normal;clustered_events	ECNT=11;HCNT=2;MAX_ED=159;MIN_ED=14;NLOD=13.01;TLOD=36.46	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:190,12:0.077:6:6:0.500:0|1:63823328_G_C:6669,432:80:110	0/0:91,4:0.056:0:4:0.00:0|1:63823328_G_C:3221,148:35:56
chr12	63823342	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=11;HCNT=2;MAX_ED=159;MIN_ED=14;NLOD=10.62;TLOD=42.68	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:173,13:0.084:4:9:0.692:0|1:63823328_G_C:5819,406:77:96	0/0:88,5:0.053:0:5:1.00:0|1:63823328_G_C:2987,166:35:53
chr12	63823364	.	A	G	.	alt_allele_in_normal;clustered_events	ECNT=11;HCNT=2;MAX_ED=159;MIN_ED=14;NLOD=6.38;TLOD=32.13	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:144,10:0.069:2:8:0.800:0|1:63823328_G_C:4731,331:67:77	0/0:81,3:0.061:1:2:0.667:0|1:63823328_G_C:2651,103:35:46
chr12	63823371	.	T	C	.	alt_allele_in_normal;clustered_events	ECNT=11;HCNT=2;MAX_ED=159;MIN_ED=14;NLOD=15.68;TLOD=29.02	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:138,9:0.066:2:7:0.222:0|1:63823328_G_C:4400,315:61:77	0/0:79,3:0.036:1:2:0.333:0|1:63823328_G_C:2489,106:35:44
chr12	63823378	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=11;HCNT=2;MAX_ED=159;MIN_ED=14;NLOD=15.38;TLOD=25.94	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:138,9:0.063:2:7:0.222:0|1:63823328_G_C:4309,305:63:75	0/0:83,3:0.037:1:2:0.333:0|1:63823328_G_C:2611,103:38:45
chr12	63823433	.	T	C	.	alt_allele_in_normal;clustered_events	ECNT=11;HCNT=5;MAX_ED=159;MIN_ED=14;NLOD=6.37;TLOD=17.01	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:108,6:0.057:3:3:0.500:0|1:63823433_T_C:3496,217:51:57	0/0:69,4:0.045:3:1:0.750:0|1:63823433_T_C:2224,143:32:37
chr12	63823434	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=11;HCNT=5;MAX_ED=159;MIN_ED=14;NLOD=6.97;TLOD=17.01	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:106,6:0.057:3:3:0.500:0|1:63823433_T_C:3737,204:50:56	0/0:69,4:0.044:3:1:0.750:0|1:63823433_T_C:2431,130:32:37
chr12	63823438	.	T	C	.	alt_allele_in_normal;clustered_events	ECNT=11;HCNT=5;MAX_ED=159;MIN_ED=14;NLOD=6.37;TLOD=17.04	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:105,6:0.058:3:3:0.500:0|1:63823433_T_C:3363,217:48:57	0/0:66,4:0.045:3:1:0.750:0|1:63823433_T_C:2085,131:29:37
chr12	63823451	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=11;HCNT=5;MAX_ED=159;MIN_ED=14;NLOD=8.46;TLOD=14.04	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:89,5:0.054:3:2:0.400:0|1:63823433_T_C:2680,164:41:48	0/0:54,3:0.034:2:1:0.333:0|1:63823433_T_C:1607,91:23:31
chr12	63823468	.	G	A	.	clustered_events;multi_event_alt_allele_in_normal	ECNT=11;HCNT=5;MAX_ED=159;MIN_ED=14;NLOD=10.85;TLOD=14.74	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:63,5:0.074:3:2:0.600:0|1:63823433_T_C:2047,161:28:35	0/0:47,1:0.020:1:0:1.00:0|1:63823433_T_C:1479,33:21:26
chr12	63823487	.	C	T	.	clustered_events;multi_event_alt_allele_in_normal	ECNT=11;HCNT=5;MAX_ED=159;MIN_ED=14;NLOD=9.95;TLOD=8.31	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:56,2:0.049:1:1:0.500:0|1:63823433_T_C:1639,64:24:32	0/0:45,1:0.021:1:0:0.00:0|1:63823433_T_C:1349,33:18:27
chr12	63824033	rs59063572	T	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=13.41	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:0,4:1.00:2:2:0.500:0,115:0:0	0/0:5,0:0.00:0:0:.:161,0:1:4
chr12	64194785	rs789721	A	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=13.40	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,4:0.500:2:2:0.500:131,139:2:2	0/0:5,0:0.00:0:0:.:162,0:3:2
chr12	64270894	rs1978794	A	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=9.45	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,3:0.429:3:0:0.00:127,101:1:3	0/0:3,0:0.00:0:0:.:94,0:2:1
chr12	66209619	rs11465955	C	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.80;TLOD=11.48	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:6,4:0.400:3:1:0.250:168,125:3:3	0/0:6,0:0.00:0:0:.:164,0:1:5
chr12	66235289	.	G	A	.	germline_risk	DB;ECNT=2;HCNT=1;MAX_ED=1;MIN_ED=1;NLOD=1.20;TLOD=11.69	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:3,3:0.500:2:1:0.667:0|1:66235289_G_A:101,98:2:1	0/0:4,0:0.00:0:0:.:0|1:66235289_G_A:120,0:3:1
chr12	66235290	.	C	A	.	germline_risk	ECNT=2;HCNT=1;MAX_ED=1;MIN_ED=1;NLOD=1.20;TLOD=11.69	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:3,3:0.500:2:1:0.333:0|1:66235289_G_A:105,95:2:1	0/0:3,0:0.00:0:0:.:0|1:66235289_G_A:81,0:2:1
chr12	66304681	rs2118140	A	G	.	germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=3.01;TLOD=21.91	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:13,7:0.350:5:2:0.286:410,242:5:8	0/0:10,0:0.00:0:0:.:314,0:6:4
chr12	67292508	rs11176674	G	T	.	germline_risk;t_lod_fstar	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=5.95	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,2:0.500:2:0:1.00:60,62:1:1	0/0:5,0:0.00:0:0:.:166,0:2:3
chr12	68295159	rs7958232	C	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=22.50	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:5,7:0.583:5:2:0.286:171,227:3:2	0/0:5,0:0.00:0:0:.:178,0:2:3
chr12	68473716	.	T	TA	.	germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;RPA=7,8;RU=A;STR;TLOD=7.74	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:6,6:0.500:2:4:.:168,202:3:3	0/0:5,0:0.00:0:0:.:163,0:2:3
chr12	68474509	rs2015278	G	A	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.05;TLOD=73.74	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:22,25:0.561:8:17:0.320:770,819:11:11	0/0:24,1:0.043:0:1:0.00:833,34:19:5
chr12	68836531	.	A	T	.	germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=17.57	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,5:0.714:4:1:0.200:66,170:0:2	0/0:5,0:0.00:0:0:.:155,0:3:2
chr12	69591879	.	AAAC	A	.	germline_risk;str_contraction	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.20;RPA=3,2;RU=AAC;STR;TLOD=9.00	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:0,2:1.00:1:1:.:0,66:0:0	0/0:4,0:0.00:0:0:.:137,0:2:2
chr12	69597788	.	AAT	A	.	alt_allele_in_normal;str_contraction	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=3.61;RPA=3,2;RU=AT;STR;TLOD=36.91	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:15,12:0.423:6:6:.:501,405:11:4	0/0:23,1:0.043:1:0:.:769,34:11:12
chr12	69794566	rs35394896	T	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.81;TLOD=23.67	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:13,8:0.381:3:5:0.375:407,266:7:6	0/0:16,0:0.00:0:0:.:483,0:8:8
chr12	70534463	.	T	C	.	germline_risk;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=4.64	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:16,2:0.125:0:2:0.00:524,63:6:10	0/0:6,0:0.00:0:0:.:199,0:3:3
chr12	70559697	rs34465365	C	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=14.05	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,4:0.500:3:1:0.250:145,116:3:1	0/0:4,0:0.00:0:0:.:144,0:0:4
chr12	71132929	rs3816942	C	T	.	germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=2.41;TLOD=9.75	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,3:0.429:1:2:0.667:138,104:2:2	0/0:8,0:0.00:0:0:.:280,0:3:5
chr12	71139509	.	T	C	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.91;TLOD=4.77	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:22,2:0.083:1:1:0.500:676,68:10:12	0/0:13,0:0.00:0:0:.:410,0:7:6
chr12	71663475	.	CGCT	C	.	alt_allele_in_normal;str_contraction;t_lod_fstar	ECNT=1;HCNT=3;MAX_ED=.;MIN_ED=.;NLOD=23.53;RPA=6,5;RU=GCT;STR;TLOD=4.36	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:161,2:0.013:1:1:.:4932,62:83:78	0/0:102,2:0.019:0:2:.:3202,65:58:44
chr12	75207688	.	C	T	.	t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=2.41;TLOD=4.48	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:21,3:0.105:0:3:1.00:665,92:11:10	0/0:8,0:0.00:0:0:.:262,0:3:5
chr12	76600417	rs2632234	T	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=17.55	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:13,7:0.353:1:6:0.143:434,229:10:3	0/0:6,0:0.00:0:0:.:206,0:3:3
chr12	76984597	rs11609363	A	G	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.30;TLOD=74.09	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:17,24:0.564:11:13:0.542:541,825:11:6	0/0:20,1:0.050:0:1:1.00:630,22:10:10
chr12	82358854	rs4882530	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=19.49	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:3,6:0.667:4:2:0.667:101,192:1:2	0/0:5,0:0.00:0:0:.:160,0:1:4
chr12	88111856	rs45465996	A	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=18.91	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:8,6:0.429:4:2:0.333:258,202:2:6	0/0:7,0:0.00:0:0:.:229,0:3:4
chr12	92621585	rs59351026	C	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=22.31	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,6:0.750:5:1:0.167:71,214:2:0	0/0:5,0:0.00:0:0:.:174,0:2:3
chr12	92858412	rs7138228	A	T	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.87;TLOD=77.61	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:31,27:0.473:19:8:0.296:1013,851:11:20	0/0:27,2:0.071:1:1:0.500:880,56:12:15
chr12	92865032	rs61935280	T	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=34.96	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:10,13:0.591:4:9:0.308:327,353:5:5	0/0:7,0:0.00:0:0:.:223,0:1:6
chr12	94425057	.	T	G	.	t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=2.71;TLOD=5.17	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,2:0.333:1:1:0.500:127,67:2:2	0/0:9,0:0.00:0:0:.:263,0:7:2
chr12	94548884	rs12371985	G	A	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.09;TLOD=124.28	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:46,41:0.482:19:22:0.463:1547,1335:23:23	0/0:44,2:0.049:0:2:0.00:1502,63:32:12
chr12	94571282	rs1290910	G	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.10;TLOD=7.35	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:0,2:1.00:0:2:0.00:0,64:0:0	0/0:7,0:0.00:0:0:.:190,0:2:5
chr12	95512714	.	AAG	A	.	germline_risk;str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.897;RPA=6,5;RU=AG;STR;TLOD=4.25	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:14,2:0.125:2:0:.:460,68:9:5	0/0:3,0:0.00:0:0:.:105,0:2:1
chr12	95658945	rs1052651	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=29.37	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:9,9:0.500:3:6:0.333:319,307:6:3	0/0:5,0:0.00:0:0:.:178,0:2:3
chr12	95670171	.	TGTTA	T	.	germline_risk;str_contraction	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.07;RPA=2,1;RU=GTTA;STR;TLOD=22.04	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:12,6:0.333:3:3:.:389,195:6:6	0/0:9,0:0.00:0:0:.:291,0:5:4
chr12	96943421	rs249579	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=12.50	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,4:0.800:3:1:0.750:29,118:0:1	0/0:4,0:0.00:0:0:.:132,0:2:2
chr12	96943918	rs249581	C	T	.	germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=11.43	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:0,3:1.00:1:2:0.667:0,100:0:0	0/0:4,0:0.00:0:0:.:111,0:3:1
chr12	96944918	rs249585	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.01;TLOD=8.58	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:7,3:0.300:1:2:0.333:240,98:3:4	0/0:10,0:0.00:0:0:.:340,0:8:2
chr12	98590669	rs1807234	C	G	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.03;TLOD=80.55	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:30,30:0.500:19:11:0.367:998,844:14:16	0/0:28,2:0.069:0:2:1.00:917,57:16:12
chr12	99053361	rs3794799	C	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.06;TLOD=20.61	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,6:0.857:6:0:0.00:37,193:0:1	0/0:7,0:0.00:0:0:.:216,0:3:4
chr12	100971519	rs11110605	G	A	.	germline_risk;t_lod_fstar	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=5.68	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:7,2:0.222:1:1:0.500:236,68:5:2	0/0:4,0:0.00:0:0:.:135,0:2:2
chr12	101726511	rs7965541	C	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.71;TLOD=30.02	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:5,9:0.643:5:4:0.444:174,297:4:1	0/0:9,0:0.00:0:0:.:320,0:1:8
chr12	102165930	rs3794201	A	C	.	PASS	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.62;TLOD=63.66	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:17,18:0.563:14:4:0.222:570,646:8:9	0/0:22,0:0.00:0:0:.:731,0:10:12
chr12	102917009	rs1522296	G	A	.	PASS	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.35;TLOD=60.82	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:30,24:0.408:12:12:0.500:863,790:16:14	0/0:34,1:0.029:1:0:1.00:974,34:23:11
chr12	106016546	.	T	C	.	alt_allele_in_normal	ECNT=1;HCNT=92;MAX_ED=.;MIN_ED=.;NLOD=3.71;TLOD=7.57	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:103,5:0.050:2:3:0.400:3425,178:52:51	0/0:68,6:0.094:3:3:0.500:2244,199:29:39
chr12	106501477	.	C	CA	.	PASS	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.62;RPA=2,3;RU=A;STR;TLOD=31.02	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:11,11:0.500:6:5:.:402,400:1:10	0/0:12,0:0.00:0:0:.:438,0:5:7
chr12	106687145	.	TTC	T	.	alt_allele_in_normal;germline_risk;str_contraction;t_lod_fstar	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=1.35;RPA=7,6;RU=TC;STR;TLOD=5.62	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:37,3:0.075:1:2:.:1175,101:23:14	0/0:15,1:0.063:1:0:.:475,34:4:11
chr12	108524654	rs7307731	C	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=12.28	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,4:0.500:2:2:0.500:113,128:3:1	0/0:5,0:0.00:0:0:.:141,0:3:2
chr12	108538277	rs2287551	C	T	.	alt_allele_in_normal;clustered_events;germline_risk	DB;ECNT=2;HCNT=2;MAX_ED=47;MIN_ED=47;NLOD=2.64;TLOD=45.00	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:19,15:0.441:10:5:0.333:531,480:7:12	0/0:20,1:0.048:0:1:1.00:566,32:13:7
chr12	108538324	rs7978765	G	A	.	clustered_events;germline_risk	DB;ECNT=2;HCNT=2;MAX_ED=47;MIN_ED=47;NLOD=3.61;TLOD=22.14	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:8,7:0.467:6:1:0.857:259,233:2:6	0/0:12,0:0.00:0:0:.:401,0:5:7
chr12	108592255	.	C	T	.	germline_risk	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=2.17;TLOD=34.70	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:14,12:0.480:8:4:0.333:440,362:6:8	0/0:12,2:0.143:1:1:0.500:375,4:8:4
chr12	108623874	.	GGAGTGGTCTGTGCCTCCGTGGGCACTGGTT	G	.	alt_allele_in_normal;germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.34;TLOD=138.42	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:83,43:0.328:26:17:.:2694,1481:56:27	0/0:79,7:0.061:7:0:.:2599,256:57:22
chr12	108659018	.	CAG	C	.	germline_risk;str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.79;RPA=8,7;RU=AG;STR;TLOD=4.04	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:9,2:0.182:1:1:.:293,73:5:4	0/0:6,0:0.00:0:0:.:216,0:3:3
chr12	108890198	rs117594747	G	A	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=0.808;TLOD=90.25	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:16,31:0.636:20:11:0.645:577,979:11:5	0/0:42,3:0.077:1:2:0.333:1516,95:25:17
chr12	109172443	.	G	T	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=8.43;TLOD=4.14	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:41,2:0.047:1:1:0.500:1416,67:29:12	0/0:28,0:0.00:0:0:.:942,0:13:15
chr12	109216921	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.62;TLOD=4.01	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:41,2:0.050:0:2:0.00:1376,65:17:24	0/0:24,0:0.00:0:0:.:788,0:13:11
chr12	109245890	rs10774628	A	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.71;TLOD=23.58	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:3,7:0.700:5:2:0.286:94,229:2:1	0/0:9,0:0.00:0:0:.:279,0:3:6
chr12	109915367	rs3809300	T	C	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.82;TLOD=183.61	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:58,71:0.528:34:37:0.479:1883,2420:30:28	0/0:48,4:0.061:4:0:1.00:1576,97:24:24
chr12	110180430	rs16940805	A	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.41;TLOD=25.21	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:8,8:0.533:5:3:0.375:249,259:5:3	0/0:8,0:0.00:0:0:.:268,0:3:5
chr12	112167887	.	A	C	.	alt_allele_in_normal	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.72;TLOD=10.07	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:80,39:0.320:23:16:0.410:2359,164:35:45	0/0:54,12:0.188:6:6:0.500:1578,43:29:25
chr12	112907283	.	TGAGA	T	.	t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=4.79;RPA=10,8;RU=GA;STR;TLOD=4.45	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:25,2:0.074:1:1:.:798,63:13:12	0/0:16,0:0.00:0:0:.:519,0:7:9
chr12	112948811	rs34647135	T	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=10.95	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,3:0.750:2:1:0.667:31,105:0:1	0/0:5,0:0.00:0:0:.:161,0:1:4
chr12	112949229	.	A	AG	.	alt_allele_in_normal	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.00;RPA=6,7;RU=G;STR;TLOD=20.06	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:22,12:0.364:6:6:.:740,397:10:12	0/0:32,2:0.061:1:1:.:1062,68:15:17
chr12	113008922	.	G	A	.	germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=15.19	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,5:0.556:2:3:0.400:101,155:1:3	0/0:7,0:0.00:0:0:.:194,0:3:4
chr12	113015779	.	G	T	.	alt_allele_in_normal;clustered_events;germline_risk	ECNT=2;HCNT=2;MAX_ED=3;MIN_ED=3;NLOD=1.52;TLOD=33.22	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:16,11:0.346:8:3:0.727:0|1:113015779_G_T:569,380:9:7	0/0:20,1:0.050:1:0:1.00:0|1:113015779_G_T:700,34:8:12
chr12	113015782	.	C	T	.	alt_allele_in_normal;clustered_events;germline_risk	ECNT=2;HCNT=2;MAX_ED=3;MIN_ED=3;NLOD=1.52;TLOD=33.22	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:16,11:0.346:8:3:0.273:0|1:113015779_G_T:448,362:8:8	0/0:19,1:0.050:1:0:0.00:0|1:113015779_G_T:595,32:7:12
chr12	113058466	.	A	C	.	alt_allele_in_normal;t_lod_fstar	ECNT=1;HCNT=12;MAX_ED=.;MIN_ED=.;NLOD=2.64;TLOD=5.69	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:76,17:0.128:7:10:0.588:2189,247:27:49	0/0:42,7:0.143:2:5:0.714:1222,94:21:21
chr12	113180950	.	ACTT	A	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=13.80;RPA=5,4;RU=CTT;STR;TLOD=4.53	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:147,2:0.016:2:0:.:4506,62:65:82	0/0:68,1:0.016:1:0:.:2143,33:34:34
chr12	113185412	.	G	C	.	germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=17.19	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:3,5:0.625:3:2:0.600:91,171:1:2	0/0:5,0:0.00:0:0:.:159,0:3:2
chr12	113266290	.	CCTG	C	.	alt_allele_in_normal;str_contraction	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=60.44;RPA=5,4;RU=CTG;STR;TLOD=17.42	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:551,10:0.017:8:2:.:17956,339:310:241	0/0:317,8:0.018:6:2:.:10542,262:159:158
chr12	113844691	rs2075387	C	T	.	alt_allele_in_normal	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=2.94;TLOD=27.29	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:18,10:0.370:7:3:0.300:540,299:12:6	0/0:22,1:0.045:1:0:0.00:696,32:15:7
chr12	113844873	rs2075386	G	A	.	germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=13.84	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:11,6:0.353:2:4:0.333:377,188:3:8	0/0:6,0:0.00:0:0:.:206,0:4:2
chr12	113947147	rs3782460	C	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=18.75	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:6,6:0.500:1:5:0.833:197,195:3:3	0/0:5,0:0.00:0:0:.:169,0:3:2
chr12	115980568	rs12422761	T	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=7.02	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,2:0.667:2:0:1.00:34,69:1:0	0/0:5,0:0.00:0:0:.:172,0:3:2
chr12	117039091	rs9308	C	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.17;TLOD=36.21	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:14,12:0.480:7:5:0.417:471,380:9:5	0/0:14,0:0.00:0:0:.:440,0:6:8
chr12	117039277	rs118025365	G	A	.	germline_risk;t_lod_fstar	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=5.30	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:6,2:0.250:1:1:0.500:201,63:4:2	0/0:5,0:0.00:0:0:.:174,0:2:3
chr12	117280881	rs2293051	G	C	.	alt_allele_in_normal	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.65;TLOD=77.71	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:36,32:0.459:11:21:0.344:1189,946:21:15	0/0:31,1:0.033:0:1:0.00:1068,29:18:13
chr12	119130791	rs7297606	G	A	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.24;TLOD=77.60	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:18,27:0.615:15:12:0.556:560,873:9:9	0/0:18,1:0.059:1:0:1.00:629,34:7:11
chr12	120157932	.	ACTC	A	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=11.11;RPA=5,4;RU=CTC;STR;TLOD=4.94	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:85,2:0.025:0:2:.:2677,65:44:41	0/0:38,0:0.00:0:0:.:1181,0:20:18
chr12	120345724	rs1076205	G	A	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.91;TLOD=89.01	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:32,31:0.492:13:18:0.419:1049,963:21:11	0/0:38,3:0.075:2:1:0.667:1272,87:11:27
chr12	120656307	rs569499	T	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=10.10	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:10,5:0.333:2:3:0.400:325,115:4:6	0/0:6,0:0.00:0:0:.:187,0:3:3
chr12	120696362	.	GGAA	G	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=19.46;RPA=6,5;RU=GAA;STR;TLOD=4.70	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:105,2:0.019:1:1:.:3566,68:56:49	0/0:79,1:0.013:0:1:.:2678,36:42:37
chr12	120784666	rs3213569	T	C	.	clustered_events;germline_risk	DB;ECNT=2;HCNT=2;MAX_ED=27;MIN_ED=27;NLOD=1.50;TLOD=28.40	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:7,8:0.533:3:5:0.375:213,291:5:2	0/0:5,0:0.00:0:0:.:157,0:3:2
chr12	120784693	rs3213568	C	T	.	clustered_events;germline_risk	DB;ECNT=2;HCNT=2;MAX_ED=27;MIN_ED=27;NLOD=1.20;TLOD=12.19	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:6,4:0.400:2:2:0.500:168,132:4:2	0/0:4,0:0.00:0:0:.:108,0:4:0
chr12	120845248	.	GCATT	G	.	germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=30.47	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:0,7:1.00:3:4:.:0,236:0:0	0/0:4,0:0.00:0:0:.:141,0:2:2
chr12	121162435	rs28360447	G	A	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=3.78;TLOD=84.64	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:25,29:0.553:10:19:0.345:754,956:11:14	0/0:38,2:0.053:0:2:0.00:1131,67:17:21
chr12	121177300	rs1718119	G	A	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.13;TLOD=60.61	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:21,22:0.513:10:12:0.455:668,692:7:14	0/0:27,2:0.069:1:1:0.500:814,66:16:11
chr12	121184220	rs1626329	C	T	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.938;TLOD=36.70	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:12,12:0.522:6:6:0.500:401,380:6:6	0/0:15,1:0.063:1:0:0.00:504,34:7:8
chr12	121849668	.	T	C	.	clustered_events;multi_event_alt_allele_in_normal;t_lod_fstar	ECNT=2;HCNT=6;MAX_ED=39;MIN_ED=39;NLOD=7.56;TLOD=4.19	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:45,2:0.043:0:2:0.00:1475,68:28:17	0/0:37,1:0.028:1:0:1.00:1210,28:17:20
chr12	121849707	.	C	T	.	alt_allele_in_normal;clustered_events;germline_risk	DB;ECNT=2;HCNT=8;MAX_ED=39;MIN_ED=39;NLOD=2.01;TLOD=112.00	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:33,41:0.556:26:15:0.366:1131,1324:24:9	0/0:48,3:0.068:1:2:0.667:1622,98:21:27
chr12	122563788	rs74921432	A	T	.	t_lod_fstar	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=8.13;TLOD=6.28	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:59,4:0.059:2:2:0.500:1826,128:31:28	0/0:35,0:0.00:0:0:.:1141,0:19:16
chr12	122702152	.	C	G	.	alt_allele_in_normal;clustered_events	ECNT=2;HCNT=32;MAX_ED=41;MIN_ED=41;NLOD=17.89;TLOD=8.68	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:344,7:0.023:3:4:0.571:11939,242:202:142	0/0:191,10:0.054:5:5:0.500:6706,366:101:90
chr12	122702193	.	TAAGGA	T	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=2;HCNT=32;MAX_ED=41;MIN_ED=41;NLOD=27.43;TLOD=5.31	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:361,3:9.288e-03:2:1:.:11555,94:204:157	0/0:175,5:0.031:4:1:.:5639,156:86:89
chr12	123179967	rs1727301	G	A	.	PASS	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.41;TLOD=10.90	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:12,4:0.308:3:1:0.750:389,125:7:5	0/0:10,0:0.00:0:0:.:358,0:8:2
chr12	123309903	rs2277343	A	T	.	PASS	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=5.67;TLOD=24.03	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:35,16:0.163:7:8:0.533:915,490:18:10	0/0:26,1:0.020:0:1:1.00:725,34:10:12
chr12	123328946	rs7301163	C	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=23.70	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,7:0.636:4:3:0.429:141,235:2:2	0/0:4,0:0.00:0:0:.:147,0:3:1
chr12	123331460	.	T	TATGTTG	.	PASS	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.02;TLOD=24.01	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,5:0.600:2:3:.:127,160:2:2	0/0:10,0:0.00:0:0:.:307,0:6:4
chr12	123396315	rs28410096	T	C	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.44;TLOD=83.10	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:16,25:0.625:14:11:0.560:500,827:8:8	0/0:18,1:0.056:0:1:0.00:584,35:9:9
chr12	124342130	rs12314162	C	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.91;TLOD=27.47	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:14,9:0.429:3:6:0.667:428,294:11:3	0/0:14,0:0.00:0:0:.:365,0:6:8
chr12	124354619	rs2271141	G	A	.	germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=15.70	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,5:0.556:2:3:0.400:130,160:2:2	0/0:3,0:0.00:0:0:.:103,0:2:1
chr12	124355353	rs870051	T	C	.	clustered_events;germline_risk	DB;ECNT=2;HCNT=12;MAX_ED=46;MIN_ED=46;NLOD=2.41;TLOD=29.83	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:7,9:0.563:5:4:0.556:236,303:6:1	0/0:8,0:0.00:0:0:.:268,0:5:3
chr12	124355399	rs870052	T	C	.	alt_allele_in_normal;clustered_events;germline_risk	DB;ECNT=2;HCNT=12;MAX_ED=46;MIN_ED=46;NLOD=1.94;TLOD=32.98	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:17,12:0.407:5:7:0.417:563,393:8:9	0/0:18,1:0.053:0:1:0.00:580,33:7:11
chr12	124400360	rs79859567	G	A	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.74;TLOD=53.86	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:14,18:0.563:7:11:0.389:400,551:8:6	0/0:24,1:0.040:1:0:1.00:680,33:9:15
chr12	124400744	rs2293513	T	C	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=3;MAX_ED=.;MIN_ED=.;NLOD=0.670;TLOD=63.99	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:24,25:0.510:12:13:0.480:777,677:11:13	0/0:22,2:0.083:0:2:0.00:713,56:11:11
chr12	128439181	rs10773543	A	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=17.50	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:6,6:0.556:2:4:0.667:203,214:2:4	0/0:4,0:0.00:0:0:.:134,0:3:1
chr12	130971707	rs4759533	G	A	.	germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=27.11	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:3,8:0.727:2:6:0.250:106,261:0:3	0/0:4,0:0.00:0:0:.:141,0:1:3
chr12	131006084	.	G	A	.	alt_allele_in_normal;germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.37;TLOD=57.04	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:20,21:0.500:12:9:0.571:624,625:9:11	0/0:27,2:0.069:2:0:1.00:920,64:20:7
chr12	131105859	rs4759544	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.21;TLOD=47.25	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:17,16:0.484:10:6:0.625:552,530:5:12	0/0:14,0:0.00:0:0:.:476,0:6:8
chr12	131599839	.	TG	T	.	germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=7.07	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,2:0.667:2:0:.:32,61:1:0	0/0:4,0:0.00:0:0:.:132,0:3:1
chr12	132679609	.	A	G	.	PASS	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=14.14;TLOD=21.91	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:96,11:0.089:7:4:0.364:3000,384:51:45	0/0:53,0:0.00:0:0:.:1654,0:17:36
chr12	132680318	rs5744738	C	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.71;TLOD=21.24	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:8,7:0.467:2:5:0.714:263,224:5:3	0/0:9,0:0.00:0:0:.:300,0:6:3
chr12	132730341	.	A	G	.	PASS	ECNT=2;HCNT=2;MAX_ED=1;MIN_ED=1;NLOD=4.21;TLOD=18.54	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:9,5:0.357:1:4:0.800:0|1:132730341_A_G:289,160:3:6	0/0:14,0:0.00:0:0:.:0|1:132730341_A_G:445,0:9:5
chr12	132730342	.	T	C	.	PASS	ECNT=2;HCNT=2;MAX_ED=1;MIN_ED=1;NLOD=4.21;TLOD=18.54	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:9,5:0.357:1:4:0.200:0|1:132730341_A_G:285,142:3:6	0/0:14,0:0.00:0:0:.:0|1:132730341_A_G:435,0:9:5
chr12	132841396	.	T	TAA	.	germline_risk	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.51;RPA=3,5;RU=A;STR;TLOD=6.87	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,2:0.500:1:1:.:49,60:1:1	0/0:5,0:0.00:0:0:.:142,0:4:1
chr12	132861688	rs2306542	C	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=33.56	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:5,10:0.667:1:9:0.900:175,330:1:4	0/0:6,0:0.00:0:0:.:212,0:4:2
chr13	18174042	.	G	A	.	alt_allele_in_normal;clustered_events;germline_risk	ECNT=2;HCNT=3;MAX_ED=29;MIN_ED=29;NLOD=1.09;TLOD=6.37	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:13,4:0.214:1:3:0.250:417,128:6:7	0/0:21,2:0.067:0:2:0.00:657,63:12:9
chr13	18174071	.	G	A	.	alt_allele_in_normal;clustered_events;germline_risk;t_lod_fstar	ECNT=2;HCNT=2;MAX_ED=29;MIN_ED=29;NLOD=0.637;TLOD=4.26	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:11,3:0.182:1:2:0.333:374,97:6:5	0/0:15,1:0.071:0:1:0.00:502,31:9:6
chr13	18177976	.	A	T	.	t_lod_fstar	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=11.07;TLOD=5.89	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:45,4:0.064:0:4:1.00:1429,131:26:19	0/0:50,1:0.020:0:1:1.00:1601,32:29:21
chr13	18331991	.	A	G	.	alt_allele_in_normal;germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.54;TLOD=8.84	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:26,4:0.138:2:2:0.500:847,128:11:15	0/0:18,1:0.056:1:0:0.00:608,34:8:10
chr13	19560617	.	G	T	.	alt_allele_in_normal	ECNT=2;HCNT=2;MAX_ED=1;MIN_ED=1;NLOD=6.64;TLOD=9.05	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:33,4:0.086:2:2:0.500:0|1:19560617_G_T:1169,129:19:14	0/0:37,2:0.027:2:0:1.00:0|1:19560617_G_T:1290,63:15:22
chr13	19560618	.	G	A	.	alt_allele_in_normal	ECNT=2;HCNT=2;MAX_ED=1;MIN_ED=1;NLOD=6.64;TLOD=9.09	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:34,4:0.088:2:2:0.500:0|1:19560617_G_T:1159,131:19:15	0/0:37,2:0.027:2:0:1.00:0|1:19560617_G_T:1261,62:15:22
chr13	20188880	.	A	T	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=11.14;TLOD=4.01	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:45,2:0.050:0:2:1.00:1498,65:30:15	0/0:43,0:0.00:0:0:.:1444,0:24:19
chr13	20721781	.	A	C	.	alt_allele_in_normal;t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=17.01;TLOD=4.13	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:122,38:0.207:17:21:0.553:3647,195:53:69	0/0:155,32:0.196:17:15:0.469:4542,94:72:83
chr13	24441948	.	A	G	.	clustered_events;t_lod_fstar	ECNT=2;HCNT=2;MAX_ED=9;MIN_ED=9;NLOD=7.83;TLOD=5.70	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:33,2:0.059:1:1:0.500:0|1:24441948_A_G:1092,70:15:18	0/0:29,0:0.00:0:0:.:0|1:24441948_A_G:973,0:13:16
chr13	24441957	.	C	T	.	clustered_events;t_lod_fstar	ECNT=2;HCNT=2;MAX_ED=9;MIN_ED=9;NLOD=7.22;TLOD=5.70	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:32,2:0.059:1:1:0.500:0|1:24441948_A_G:1088,66:13:19	0/0:26,0:0.00:0:0:.:0|1:24441948_A_G:913,0:12:14
chr13	24595111	.	G	T	.	alt_allele_in_normal;clustered_events	ECNT=2;HCNT=3;MAX_ED=3;MIN_ED=3;NLOD=6.21;TLOD=8.47	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:58,3:0.056:1:2:0.333:0|1:24595111_G_T:2019,97:21:37	0/0:49,3:0.060:1:2:0.333:0|1:24595111_G_T:1698,100:34:15
chr13	24595114	.	G	C	.	alt_allele_in_normal;clustered_events	ECNT=2;HCNT=3;MAX_ED=3;MIN_ED=3;NLOD=5.91;TLOD=8.44	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:57,3:0.055:1:2:0.333:0|1:24595111_G_T:1947,96:21:36	0/0:45,2:0.061:1:1:0.500:0|1:24595111_G_T:1547,69:32:13
chr13	25017565	.	A	G	.	clustered_events;t_lod_fstar	ECNT=2;HCNT=4;MAX_ED=7;MIN_ED=7;NLOD=16.25;TLOD=5.25	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:57,2:0.036:0:2:1.00:0|1:25017565_A_G:1925,71:23:34	0/0:51,0:0.00:0:0:.:0|1:25017565_A_G:1704,0:18:33
chr13	25017572	.	A	G	.	clustered_events;t_lod_fstar	ECNT=2;HCNT=4;MAX_ED=7;MIN_ED=7;NLOD=15.05;TLOD=5.29	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:56,2:0.037:0:2:1.00:0|1:25017565_A_G:1769,69:21:35	0/0:48,0:0.00:0:0:.:0|1:25017565_A_G:1548,0:18:30
chr13	25096565	.	G	T	.	alt_allele_in_normal;clustered_events	ECNT=15;HCNT=10;MAX_ED=216;MIN_ED=9;NLOD=27.72;TLOD=22.32	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:157,6:0.052:2:4:0.333:0|1:25096565_G_T:5447,198:92:65	0/0:122,3:0.024:1:2:0.333:0|1:25096565_G_T:4269,98:68:54
chr13	25096574	.	C	G	.	alt_allele_in_normal;clustered_events	ECNT=15;HCNT=10;MAX_ED=216;MIN_ED=9;NLOD=28.93;TLOD=25.26	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:172,10:0.054:5:5:0.500:0|1:25096565_G_T:5906,286:99:73	0/0:128,3:0.024:1:2:0.667:0|1:25096565_G_T:4328,100:71:57
chr13	25096579	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=15;HCNT=10;MAX_ED=216;MIN_ED=9;NLOD=29.83;TLOD=25.12	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:173,10:0.052:5:5:0.500:0|1:25096565_G_T:5412,326:103:70	0/0:134,3:0.023:1:2:0.333:0|1:25096565_G_T:4148,100:74:60
chr13	25096585	.	C	A	.	alt_allele_in_normal;clustered_events	ECNT=15;HCNT=10;MAX_ED=216;MIN_ED=9;NLOD=32.49;TLOD=25.24	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:178,10:0.053:5:5:0.500:0|1:25096565_G_T:5545,346:100:78	0/0:134,3:0.022:1:2:0.667:0|1:25096565_G_T:4194,98:77:57
chr13	25096592	.	T	G	.	alt_allele_in_normal;clustered_events	ECNT=15;HCNT=10;MAX_ED=216;MIN_ED=9;NLOD=29.48;TLOD=25.43	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:173,10:0.056:5:5:0.500:0|1:25096565_G_T:5683,364:95:78	0/0:133,3:0.023:1:2:0.333:0|1:25096565_G_T:4350,105:77:56
chr13	25096629	.	A	G	.	clustered_events;homologous_mapping_event	ECNT=15;HCNT=10;MAX_ED=216;MIN_ED=9;NLOD=38.88;TLOD=11.63	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:156,5:0.033:3:2:0.400:0|1:25096629_A_G:4786,151:87:69	0/0:135,0:0.00:0:0:.:0|1:25096629_A_G:4139,0:70:65
chr13	25096638	.	C	T	.	clustered_events;homologous_mapping_event	ECNT=15;HCNT=10;MAX_ED=216;MIN_ED=9;NLOD=39.43;TLOD=11.68	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:145,5:0.034:3:2:0.400:0|1:25096629_A_G:5010,163:79:66	0/0:136,0:0.00:0:0:.:0|1:25096629_A_G:4779,0:68:68
chr13	25096639	.	A	G	.	clustered_events;homologous_mapping_event	ECNT=15;HCNT=10;MAX_ED=216;MIN_ED=9;NLOD=40.03;TLOD=11.65	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:145,4:0.034:3:1:0.250:0|1:25096629_A_G:4467,139:79:66	0/0:137,0:0.00:0:0:.:0|1:25096629_A_G:4254,0:69:68
chr13	25096642	.	C	G	.	clustered_events;homologous_mapping_event	ECNT=15;HCNT=10;MAX_ED=216;MIN_ED=9;NLOD=38.83;TLOD=10.06	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:141,4:0.028:3:1:0.250:0|1:25096629_A_G:4147,135:78:63	0/0:135,0:0.00:0:0:.:0|1:25096629_A_G:4079,0:68:67
chr13	25096713	.	A	G	.	clustered_events;multi_event_alt_allele_in_normal	ECNT=15;HCNT=14;MAX_ED=216;MIN_ED=9;NLOD=23.62;TLOD=15.47	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:102,7:0.069:2:5:0.714:3324,232:54:48	0/0:97,1:0.011:0:1:1.00:3186,36:47:50
chr13	25096730	.	G	A	.	clustered_events;multi_event_alt_allele_in_normal	ECNT=15;HCNT=14;MAX_ED=216;MIN_ED=9;NLOD=21.09;TLOD=34.71	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:87,11:0.116:5:6:0.455:0|1:25096730_G_A:2988,372:48:39	0/0:84,1:0.012:0:1:0.00:0|1:25096730_G_A:2950,35:41:43
chr13	25096735	.	A	G	.	clustered_events;multi_event_alt_allele_in_normal	ECNT=15;HCNT=14;MAX_ED=216;MIN_ED=9;NLOD=23.79;TLOD=41.05	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:86,12:0.135:5:7:0.583:0|1:25096730_G_A:2810,401:50:36	0/0:87,1:0.011:0:1:1.00:0|1:25096730_G_A:2853,35:44:43
chr13	25096739	.	G	A	.	clustered_events;multi_event_alt_allele_in_normal	ECNT=15;HCNT=14;MAX_ED=216;MIN_ED=9;NLOD=23.49;TLOD=41.24	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:85,13:0.140:6:7:0.462:0|1:25096730_G_A:2960,420:50:35	0/0:93,1:0.011:0:1:0.00:0|1:25096730_G_A:3189,33:45:48
chr13	25096769	.	C	A	.	alt_allele_in_normal;clustered_events	ECNT=15;HCNT=20;MAX_ED=216;MIN_ED=9;NLOD=16.13;TLOD=36.96	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:84,16:0.165:9:7:0.438:2816,513:48:36	0/0:107,4:0.038:2:2:0.500:3618,129:56:51
chr13	25096781	.	A	G	.	alt_allele_in_normal;clustered_events	ECNT=15;HCNT=19;MAX_ED=216;MIN_ED=9;NLOD=9.94;TLOD=35.72	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:88,17:0.170:9:8:0.471:2843,498:49:39	0/0:103,6:0.058:4:2:0.333:3351,182:57:46
chr13	25096815	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=8;HCNT=15;MAX_ED=62;MIN_ED=2;NLOD=9.71;TLOD=43.68	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:104,16:0.124:9:7:0.563:0|1:25096815_G_A:3222,509:59:45	0/0:111,6:0.056:4:2:0.667:0|1:25096815_G_A:3446,195:57:54
chr13	25096817	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=8;HCNT=15;MAX_ED=62;MIN_ED=2;NLOD=9.41;TLOD=43.68	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:109,15:0.124:9:6:0.400:0|1:25096815_G_A:3691,513:63:46	0/0:111,6:0.056:4:2:0.333:0|1:25096815_G_A:3726,204:56:55
chr13	25096840	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=8;HCNT=12;MAX_ED=62;MIN_ED=2;NLOD=10.31;TLOD=36.17	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:101,10:0.112:5:5:0.500:0|1:25096840_C_T:3162,325:55:46	0/0:108,6:0.055:4:2:0.333:0|1:25096840_C_T:3232,197:51:57
chr13	25096843	.	G	C	.	alt_allele_in_normal;clustered_events	ECNT=8;HCNT=12;MAX_ED=62;MIN_ED=2;NLOD=10.31;TLOD=34.02	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:93,11:0.101:5:6:0.455:0|1:25096840_C_T:3154,369:50:43	0/0:108,6:0.055:4:2:0.667:0|1:25096840_C_T:3540,201:51:57
chr13	25096846	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=8;HCNT=12;MAX_ED=62;MIN_ED=2;NLOD=10.31;TLOD=36.27	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:93,10:0.112:4:6:0.600:0|1:25096840_C_T:2891,329:49:44	0/0:106,6:0.055:4:2:0.333:0|1:25096840_C_T:3167,193:50:56
chr13	25096850	.	T	G	.	alt_allele_in_normal;clustered_events	ECNT=8;HCNT=12;MAX_ED=62;MIN_ED=2;NLOD=18.11;TLOD=32.88	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:92,11:0.107:4:7:0.364:0|1:25096840_C_T:3088,346:49:43	0/0:106,4:0.038:2:2:0.500:0|1:25096840_C_T:3500,117:48:58
chr13	25096870	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=8;HCNT=15;MAX_ED=62;MIN_ED=2;NLOD=11.20;TLOD=48.18	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:88,14:0.143:5:9:0.643:0|1:25096870_C_T:2715,457:49:39	0/0:97,5:0.051:3:2:0.400:0|1:25096870_C_T:2962,159:46:51
chr13	25096877	.	A	G	.	alt_allele_in_normal;clustered_events	ECNT=8;HCNT=15;MAX_ED=62;MIN_ED=2;NLOD=12.40;TLOD=53.59	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:85,17:0.165:7:10:0.588:0|1:25096870_C_T:2816,581:47:38	0/0:95,5:0.049:3:2:0.400:0|1:25096870_C_T:3160,174:44:51
chr13	25096889	.	A	G	.	alt_allele_in_normal;clustered_events	ECNT=16;HCNT=13;MAX_ED=187;MIN_ED=35;NLOD=11.00;TLOD=43.46	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:88,17:0.172:7:10:0.588:2875,518:53:35	0/0:94,5:0.053:3:2:0.400:3011,148:51:43
chr13	25096924	.	A	G	.	alt_allele_in_normal;clustered_events	ECNT=16;HCNT=12;MAX_ED=187;MIN_ED=35;NLOD=8.97;TLOD=67.61	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:119,27:0.172:11:16:0.593:4025,939:74:45	0/0:98,5:0.051:4:1:0.200:3323,174:56:42
chr13	25096942	.	A	G	.	alt_allele_in_normal;clustered_events	ECNT=16;HCNT=12;MAX_ED=187;MIN_ED=35;NLOD=11.21;TLOD=93.21	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:140,29:0.168:11:18:0.621:0|1:25096942_A_G:4519,999:81:59	0/0:107,5:0.045:4:1:0.200:0|1:25096942_A_G:3429,163:62:45
chr13	25096951	.	G	T	.	alt_allele_in_normal;clustered_events	ECNT=16;HCNT=12;MAX_ED=187;MIN_ED=35;NLOD=17.22;TLOD=82.02	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:143,26:0.152:11:15:0.423:0|1:25096942_A_G:5042,846:83:60	0/0:105,4:0.034:3:1:0.750:0|1:25096942_A_G:3705,127:55:50
chr13	25096959	.	A	AT	.	alt_allele_in_normal;clustered_events	ECNT=16;HCNT=12;MAX_ED=187;MIN_ED=35;NLOD=17.22;TLOD=73.60	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:145,25:0.140:10:15:.:0|1:25096942_A_G:4896,833:82:63	0/0:114,4:0.034:3:1:.:0|1:25096942_A_G:3789,127:58:56
chr13	25096984	.	C	T	.	clustered_events;homologous_mapping_event	ECNT=16;HCNT=11;MAX_ED=187;MIN_ED=35;NLOD=40.62;TLOD=35.42	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:167,17:0.096:7:10:0.588:5364,545:91:76	0/0:144,0:0.00:0:0:.:4565,0:75:69
chr13	25097005	.	A	G	.	alt_allele_in_normal;clustered_events	ECNT=16;HCNT=11;MAX_ED=187;MIN_ED=35;NLOD=39.74;TLOD=53.26	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:193,17:0.088:7:10:0.588:0|1:25097005_A_G:6517,575:101:92	0/0:180,3:0.017:2:1:0.333:0|1:25097005_A_G:6074,106:91:89
chr13	25097011	.	ACGG	A	.	alt_allele_in_normal;clustered_events	ECNT=16;HCNT=11;MAX_ED=187;MIN_ED=35;NLOD=48.81;TLOD=53.17	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:208,17:0.081:6:11:.:0|1:25097005_A_G:6849,558:109:99	0/0:204,3:0.014:2:1:.:0|1:25097005_A_G:6671,99:99:105
chr13	25097016	.	AGACGGAACT	A	.	alt_allele_in_normal;clustered_events	ECNT=16;HCNT=11;MAX_ED=187;MIN_ED=35;NLOD=56.94;TLOD=51.95	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:239,17:0.070:7:10:.:0|1:25097005_A_G:7702,543:120:119	0/0:240,3:0.013:2:1:.:0|1:25097005_A_G:7666,100:111:129
chr13	25097030	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=16;HCNT=11;MAX_ED=187;MIN_ED=35;NLOD=49.92;TLOD=48.34	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:243,16:0.037:7:9:0.563:0|1:25097005_A_G:7722,497:119:123	0/0:228,4:9.132e-03:3:1:0.250:0|1:25097005_A_G:7236,123:107:119
chr13	25097034	.	C	A	.	alt_allele_in_normal;clustered_events	ECNT=16;HCNT=11;MAX_ED=187;MIN_ED=35;NLOD=49.38;TLOD=42.81	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:259,14:0.060:5:9:0.643:0|1:25097005_A_G:8918,482:130:129	0/0:229,4:0.018:3:1:0.250:0|1:25097005_A_G:7843,138:107:122
chr13	25097057	.	A	G	.	alt_allele_in_normal;clustered_events	ECNT=16;HCNT=11;MAX_ED=187;MIN_ED=35;NLOD=50.04;TLOD=88.25	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:269,28:0.105:11:17:0.607:0|1:25097057_A_G:8618,956:130:139	0/0:255,5:0.021:3:2:0.400:0|1:25097057_A_G:7991,180:115:140
chr13	25097062	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=16;HCNT=11;MAX_ED=187;MIN_ED=35;NLOD=50.04;TLOD=101.49	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:269,31:0.110:11:20:0.645:0|1:25097057_A_G:9340,992:133:136	0/0:258,5:0.021:3:2:0.400:0|1:25097057_A_G:8771,167:112:146
chr13	25097068	.	A	G	.	alt_allele_in_normal;clustered_events	ECNT=16;HCNT=11;MAX_ED=187;MIN_ED=35;NLOD=52.15;TLOD=113.81	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:271,32:0.117:11:21:0.656:0|1:25097057_A_G:8743,1076:129:142	0/0:256,5:0.020:3:2:0.400:0|1:25097057_A_G:8186,176:116:140
chr13	25097072	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=16;HCNT=11;MAX_ED=187;MIN_ED=35;NLOD=48.98;TLOD=112.83	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:275,35:0.116:13:22:0.629:0|1:25097057_A_G:9469,1167:134:141	0/0:248,5:0.024:3:2:0.400:0|1:25097057_A_G:8452,162:112:136
chr13	25097076	.	T	G	.	alt_allele_in_normal;clustered_events	ECNT=16;HCNT=11;MAX_ED=187;MIN_ED=35;NLOD=49.40;TLOD=115.50	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:279,37:0.121:14:23:0.378:0|1:25097057_A_G:8953,1253:139:140	0/0:256,7:0.025:3:4:0.429:0|1:25097057_A_G:8023,229:117:139
chr13	25097133	.	A	G	.	alt_allele_in_normal;clustered_events	ECNT=9;HCNT=8;MAX_ED=127;MIN_ED=1;NLOD=47.65;TLOD=177.47	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:318,57:0.158:30:27:0.474:0|1:25097133_A_G:10757,1975:148:170	0/0:304,9:0.031:4:5:0.556:0|1:25097133_A_G:10303,318:165:139
chr13	25097134	.	AG	A	.	alt_allele_in_normal;clustered_events	ECNT=9;HCNT=8;MAX_ED=127;MIN_ED=1;NLOD=49.18;TLOD=188.04	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:322,56:0.162:30:26:.:0|1:25097133_A_G:10847,1803:148:174	0/0:313,9:0.030:4:5:.:0|1:25097133_A_G:10543,293:172:141
chr13	25097136	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=9;HCNT=8;MAX_ED=127;MIN_ED=1;NLOD=49.50;TLOD=188.05	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:315,56:0.157:30:26:0.464:0|1:25097133_A_G:9824,1817:143:172	0/0:311,9:0.030:4:5:0.556:0|1:25097133_A_G:9580,289:171:140
chr13	25097154	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=9;HCNT=8;MAX_ED=127;MIN_ED=1;NLOD=47.38;TLOD=181.62	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:313,60:0.159:34:26:0.433:0|1:25097133_A_G:10911,1883:136:177	0/0:303,7:0.029:4:3:0.429:0|1:25097133_A_G:10789,210:168:135
chr13	25097172	.	TTATGA	T	.	alt_allele_in_normal;clustered_events	ECNT=9;HCNT=8;MAX_ED=127;MIN_ED=1;NLOD=49.16;TLOD=178.98	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:300,55:0.163:30:25:.:0|1:25097133_A_G:9732,1796:125:175	0/0:253,7:0.024:4:3:.:0|1:25097133_A_G:8229,220:136:117
chr13	25097182	.	A	G	.	alt_allele_in_normal;clustered_events	ECNT=9;HCNT=8;MAX_ED=127;MIN_ED=1;NLOD=41.63;TLOD=180.74	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:256,50:0.174:25:25:0.500:0|1:25097133_A_G:8571,1678:105:151	0/0:230,5:0.026:4:1:0.200:0|1:25097133_A_G:7566,173:122:108
chr13	25097194	.	CA	C	.	alt_allele_in_normal;clustered_events	ECNT=9;HCNT=8;MAX_ED=127;MIN_ED=1;NLOD=51.80;RPA=3,2;RU=A;STR;TLOD=146.64	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:241,48:0.168:25:23:.:0|1:25097133_A_G:8295,1681:101:140	0/0:216,4:0.014:4:0:.:0|1:25097133_A_G:7411,137:108:108
chr13	25097231	.	G	T	.	alt_allele_in_normal;clustered_events	ECNT=9;HCNT=24;MAX_ED=127;MIN_ED=1;NLOD=28.35;TLOD=77.64	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:165,34:0.173:16:18:0.471:5636,1029:75:90	0/0:132,4:0.030:3:1:0.750:4554,118:61:71
chr13	25097260	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=9;HCNT=24;MAX_ED=127;MIN_ED=1;NLOD=27.63;TLOD=71.80	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:155,30:0.162:19:11:0.367:4716,961:66:89	0/0:147,5:0.034:3:2:0.400:4516,159:60:87
chr13	25097291	.	G	T	.	alt_allele_in_normal;clustered_events	ECNT=16;HCNT=15;MAX_ED=179;MIN_ED=22;NLOD=19.54;TLOD=34.72	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:136,15:0.105:10:5:0.667:4783,507:62:74	0/0:134,6:0.045:1:5:0.167:4703,200:55:79
chr13	25097313	.	A	G	.	alt_allele_in_normal;clustered_events	ECNT=16;HCNT=14;MAX_ED=179;MIN_ED=22;NLOD=22.34;TLOD=24.22	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:123,9:0.068:7:2:0.222:0|1:25097313_A_G:4028,304:55:68	0/0:138,4:0.030:0:4:1.00:0|1:25097313_A_G:4580,143:60:78
chr13	25097318	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=16;HCNT=14;MAX_ED=179;MIN_ED=22;NLOD=22.34;TLOD=22.10	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:119,7:0.061:5:2:0.286:0|1:25097313_A_G:3646,219:54:65	0/0:134,4:0.030:0:4:1.00:0|1:25097313_A_G:4107,127:56:78
chr13	25097327	.	T	C	.	alt_allele_in_normal;clustered_events	ECNT=16;HCNT=14;MAX_ED=179;MIN_ED=22;NLOD=22.92;TLOD=13.42	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:122,5:0.041:4:1:0.800:0|1:25097313_A_G:3853,171:57:65	0/0:121,3:0.025:0:3:0.00:0|1:25097313_A_G:3860,107:50:71
chr13	25097403	.	A	T	.	clustered_events;homologous_mapping_event	ECNT=16;HCNT=6;MAX_ED=179;MIN_ED=22;NLOD=41.19;TLOD=6.95	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:174,3:0.018:3:0:0.00:0|1:25097403_A_T:5421,99:75:99	0/0:139,0:0.00:0:0:.:0|1:25097403_A_T:4250,0:66:73
chr13	25097407	.	C	A	.	clustered_events;homologous_mapping_event	ECNT=16;HCNT=6;MAX_ED=179;MIN_ED=22;NLOD=43.35;TLOD=6.88	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:173,3:0.017:3:0:0.00:0|1:25097403_A_T:6011,95:77:96	0/0:144,0:0.00:0:0:.:0|1:25097403_A_T:5062,0:67:77
chr13	25097411	.	A	G	.	clustered_events;homologous_mapping_event	ECNT=16;HCNT=6;MAX_ED=179;MIN_ED=22;NLOD=43.95;TLOD=6.93	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:175,3:0.017:3:0:0.00:0|1:25097403_A_T:5573,103:79:96	0/0:147,0:0.00:0:0:.:0|1:25097403_A_T:4681,0:66:81
chr13	25097417	.	G	A	.	clustered_events;homologous_mapping_event	ECNT=16;HCNT=6;MAX_ED=179;MIN_ED=22;NLOD=47.26;TLOD=6.90	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:177,3:0.017:3:0:1.00:0|1:25097403_A_T:6171,90:83:94	0/0:152,0:0.00:0:0:.:0|1:25097403_A_T:5299,0:69:83
chr13	25097420	.	C	T	.	clustered_events;homologous_mapping_event	ECNT=16;HCNT=6;MAX_ED=179;MIN_ED=22;NLOD=47.26;TLOD=6.92	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:177,3:0.017:3:0:0.00:0|1:25097403_A_T:5983,102:84:93	0/0:157,0:0.00:0:0:.:0|1:25097403_A_T:5299,0:68:89
chr13	25097426	.	A	T	.	clustered_events;homologous_mapping_event	ECNT=16;HCNT=6;MAX_ED=179;MIN_ED=22;NLOD=50.87;TLOD=6.94	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:173,3:0.017:3:0:0.00:0|1:25097403_A_T:5501,94:84:89	0/0:174,0:0.00:0:0:.:0|1:25097403_A_T:5552,0:78:96
chr13	25097435	.	C	T	.	clustered_events;homologous_mapping_event	ECNT=16;HCNT=6;MAX_ED=179;MIN_ED=22;NLOD=53.58;TLOD=7.01	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:172,3:0.018:3:0:0.00:0|1:25097403_A_T:5899,101:83:89	0/0:181,0:0.00:0:0:.:0|1:25097403_A_T:6188,0:83:98
chr13	25097436	.	A	G	.	clustered_events;homologous_mapping_event	ECNT=16;HCNT=6;MAX_ED=179;MIN_ED=22;NLOD=53.28;TLOD=7.01	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:170,3:0.018:3:0:0.00:0|1:25097403_A_T:5479,109:82:88	0/0:183,0:0.00:0:0:.:0|1:25097403_A_T:5885,0:82:101
chr13	25097447	.	T	C	.	alt_allele_in_normal;clustered_events	ECNT=16;HCNT=9;MAX_ED=179;MIN_ED=22;NLOD=47.58;TLOD=21.84	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:180,8:0.045:6:2:0.750:0|1:25097447_T_C:5815,262:86:94	0/0:207,2:0.011:1:1:0.500:0|1:25097447_T_C:6592,66:99:108
chr13	25097448	.	A	C	.	alt_allele_in_normal;clustered_events	ECNT=16;HCNT=9;MAX_ED=179;MIN_ED=22;NLOD=47.58;TLOD=21.86	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:181,8:0.046:6:2:0.250:0|1:25097447_T_C:5649,261:86:95	0/0:207,2:0.011:1:1:0.500:0|1:25097447_T_C:6432,67:98:109
chr13	25097469	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=16;HCNT=11;MAX_ED=179;MIN_ED=22;NLOD=43.99;TLOD=44.33	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:200,17:0.075:11:6:0.647:0|1:25097469_G_A:6320,563:97:103	0/0:226,4:0.019:2:2:0.500:0|1:25097469_G_A:6946,125:105:121
chr13	25097470	.	A	G	.	alt_allele_in_normal;clustered_events	ECNT=16;HCNT=11;MAX_ED=179;MIN_ED=22;NLOD=43.69;TLOD=44.33	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:201,17:0.075:11:6:0.353:0|1:25097469_G_A:6355,597:96:105	0/0:226,4:0.020:2:2:0.500:0|1:25097469_G_A:7202,144:105:121
chr13	25097529	.	A	T	.	alt_allele_in_normal;clustered_events	ECNT=11;HCNT=8;MAX_ED=128;MIN_ED=5;NLOD=40.71;TLOD=64.05	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:233,23:0.093:13:10:0.435:0|1:25097529_A_T:7844,732:106:127	0/0:213,5:0.024:1:4:0.800:0|1:25097529_A_T:7128,167:103:110
chr13	25097534	.	A	G	.	alt_allele_in_normal;clustered_events	ECNT=11;HCNT=8;MAX_ED=128;MIN_ED=5;NLOD=44.63;TLOD=60.22	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:231,20:0.084:11:9:0.450:0|1:25097529_A_T:7586,639:109:122	0/0:214,5:0.022:1:4:0.800:0|1:25097529_A_T:7014,155:104:110
chr13	25097541	.	T	C	.	alt_allele_in_normal;clustered_events	ECNT=11;HCNT=8;MAX_ED=128;MIN_ED=5;NLOD=48.52;TLOD=49.97	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:223,15:0.072:8:7:0.533:0|1:25097529_A_T:7178,509:104:119	0/0:215,4:0.018:1:3:0.250:0|1:25097529_A_T:6922,141:101:114
chr13	25097550	.	G	C	.	alt_allele_in_normal;clustered_events	ECNT=11;HCNT=8;MAX_ED=128;MIN_ED=5;NLOD=52.12;TLOD=33.75	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:212,10:0.054:4:6:0.400:0|1:25097529_A_T:7229,343:100:112	0/0:208,2:0.014:0:2:0.00:0|1:25097529_A_T:7105,72:97:111
chr13	25097561	.	G	C	.	alt_allele_in_normal;clustered_events	ECNT=11;HCNT=8;MAX_ED=128;MIN_ED=5;NLOD=51.50;TLOD=21.56	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:191,6:0.042:2:4:0.333:0|1:25097529_A_T:6577,201:97:94	0/0:199,2:9.950e-03:0:2:0.00:0|1:25097529_A_T:6798,64:92:107
chr13	25097562	.	T	C	.	alt_allele_in_normal;clustered_events	ECNT=11;HCNT=8;MAX_ED=128;MIN_ED=5;NLOD=50.30;TLOD=21.62	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:187,6:0.042:2:4:0.333:0|1:25097529_A_T:5706,191:95:92	0/0:196,2:0.010:0:2:0.00:0|1:25097529_A_T:5892,66:92:104
chr13	25097604	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=11;HCNT=8;MAX_ED=128;MIN_ED=5;NLOD=18.15;TLOD=32.66	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:139,13:0.077:4:9:0.308:0|1:25097604_G_A:4548,437:75:64	0/0:151,7:0.040:1:6:0.143:0|1:25097604_G_A:4810,236:78:73
chr13	25097617	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=11;HCNT=8;MAX_ED=128;MIN_ED=5;NLOD=14.84;TLOD=33.06	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:126,13:0.083:4:9:0.308:0|1:25097604_G_A:3966,408:65:61	0/0:132,7:0.043:1:6:0.143:0|1:25097604_G_A:4159,224:77:55
chr13	25097621	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=11;HCNT=8;MAX_ED=128;MIN_ED=5;NLOD=10.93;TLOD=33.45	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:113,13:0.090:4:9:0.692:0|1:25097604_G_A:3362,407:57:56	0/0:122,7:0.048:1:6:0.857:0|1:25097604_G_A:3660,226:75:47
chr13	25097648	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=11;HCNT=8;MAX_ED=128;MIN_ED=5;NLOD=24.73;TLOD=14.91	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:104,7:0.065:4:3:0.571:0|1:25097648_G_A:3555,214:57:47	0/0:128,3:0.024:1:2:0.333:0|1:25097648_G_A:4429,101:74:54
chr13	25097657	.	C	T	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=11;HCNT=8;MAX_ED=128;MIN_ED=5;NLOD=25.33;TLOD=4.69	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:102,2:0.019:0:2:1.00:0|1:25097648_G_A:3063,61:53:49	0/0:128,3:0.023:1:2:0.667:0|1:25097648_G_A:3814,96:71:57
chr13	27696283	rs35418178	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.80;TLOD=7.05	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:0,2:1.00:1:1:0.500:0,61:0:0	0/0:6,0:0.00:0:0:.:174,0:2:4
chr13	27793789	.	TGGC	T	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=20.05;RPA=4,3;RU=GGC;STR;TLOD=5.17	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:64,2:0.032:0:2:.:1994,65:40:24	0/0:71,0:0.00:0:0:.:2197,0:36:35
chr13	27924266	.	C	T	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=8.43;TLOD=4.74	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:14,2:0.125:0:2:1.00:465,64:7:7	0/0:29,0:0.00:0:0:.:942,0:14:15
chr13	32385103	rs11571789	C	A	.	germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=18.64	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:5,6:0.600:2:4:0.667:160,187:3:2	0/0:7,0:0.00:0:0:.:240,0:2:5
chr13	32398497	.	C	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=12.64;TLOD=4.01	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:57,2:0.036:0:2:1.00:2003,68:29:28	0/0:44,0:0.00:0:0:.:1512,0:20:24
chr13	35868963	rs11147590	G	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=6.75	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,2:0.500:2:0:1.00:72,70:0:2	0/0:4,0:0.00:0:0:.:144,0:4:0
chr13	36126201	.	TTATA	T	.	PASS	ECNT=1;HCNT=18;MAX_ED=.;MIN_ED=.;NLOD=5.81;RPA=8,6;RU=TA;STR;TLOD=9.43	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:19,3:0.073:2:1:.:649,71:8:11	0/0:19,0:0.00:0:0:.:578,0:8:9
chr13	36174845	.	C	T	.	t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=20.12;TLOD=4.04	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:72,2:0.029:1:1:0.500:2509,70:31:41	0/0:84,0:0.00:0:0:.:2883,0:43:41
chr13	38692331	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=25.28;TLOD=5.20	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:116,3:0.027:1:2:0.333:3849,98:57:59	0/0:88,0:0.00:0:0:.:2989,0:40:48
chr13	41131549	.	ACTG	A	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=15.93;RPA=5,4;RU=CTG;STR;TLOD=5.58	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:37,2:0.051:1:1:.:1136,61:19:18	0/0:143,1:7.194e-03:0:1:.:4423,31:78:65
chr13	41721359	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=50.17;TLOD=4.18	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:176,4:0.019:2:2:0.500:6188,107:86:90	0/0:197,0:0.00:0:0:.:6906,0:101:96
chr13	44574569	.	TTGC	T	.	alt_allele_in_normal;str_contraction;t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=30.50;RPA=6,5;RU=TGC;STR;TLOD=4.83	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:114,3:0.011:2:1:.:3594,98:61:48	0/0:127,2:6.494e-03:1:1:.:4000,68:66:58
chr13	46363346	.	T	TA	.	germline_risk;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;RPA=3,4;RU=A;STR;TLOD=5.19	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,2:0.500:0:2:.:64,65:1:1	0/0:5,0:0.00:0:0:.:154,0:1:4
chr13	48081779	.	A	G	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.37;TLOD=4.80	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:21,2:0.087:1:1:0.500:649,68:13:8	0/0:18,0:0.00:0:0:.:542,0:8:10
chr13	52520986	.	G	T	.	germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=9.05	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,3:0.750:1:2:0.333:34,96:1:0	0/0:5,0:0.00:0:0:.:174,0:2:3
chr13	52703932	rs3742297	T	C	.	germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=11.15	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,3:0.750:1:2:0.333:35,107:1:0	0/0:5,0:0.00:0:0:.:164,0:3:2
chr13	52724142	.	C	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.02;TLOD=4.03	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:26,3:0.071:2:1:0.333:870,94:18:8	0/0:20,0:0.00:0:0:.:696,0:10:10
chr13	67225943	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=44.15;TLOD=4.84	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:122,4:0.025:2:2:0.500:4161,127:69:53	0/0:154,0:0.00:0:0:.:5203,0:79:75
chr13	69895228	.	C	T	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=10.23;TLOD=4.53	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:23,2:0.100:1:1:0.500:804,64:10:13	0/0:39,0:0.00:0:0:.:1358,0:30:9
chr13	73062071	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=16;MAX_ED=.;MIN_ED=.;NLOD=45.13;TLOD=4.32	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:165,4:0.025:3:1:0.750:5217,125:82:83	0/0:157,0:0.00:0:0:.:5013,0:69:88
chr13	77070573	.	AAC	A	.	alt_allele_in_normal;str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=9.98;RPA=10,9;RU=AC;STR;TLOD=4.95	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:49,7:0.130:3:4:.:1617,235:24:25	0/0:55,3:0.053:1:2:.:1816,95:15:40
chr13	80619467	rs3813532	A	C	.	germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=9.35	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,3:0.429:2:1:0.333:135,100:1:3	0/0:4,0:0.00:0:0:.:130,0:3:1
chr13	90230786	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=3;HCNT=3;MAX_ED=9;MIN_ED=3;NLOD=4.34;TLOD=12.90	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:144,5:0.032:4:1:0.200:0|1:90230786_C_T:4789,168:75:69	0/0:123,9:0.067:3:6:0.667:0|1:90230786_C_T:4177,291:55:68
chr13	90230789	.	C	G	.	alt_allele_in_normal;clustered_events	ECNT=3;HCNT=3;MAX_ED=9;MIN_ED=3;NLOD=12.75;TLOD=12.72	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:146,5:0.030:4:1:0.200:0|1:90230786_C_T:4886,176:76:70	0/0:130,6:0.054:1:5:0.833:0|1:90230786_C_T:4433,209:59:71
chr13	90230795	.	A	C	.	clustered_events;multi_event_alt_allele_in_normal	ECNT=3;HCNT=3;MAX_ED=9;MIN_ED=3;NLOD=36.74;TLOD=9.53	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:166,4:0.013:4:0:0.00:0|1:90230786_C_T:5483,129:85:81	0/0:139,1:7.380e-03:0:1:1.00:0|1:90230786_C_T:4612,33:64:75
chr13	95742615	.	CTCT	C	.	alt_allele_in_normal;str_contraction	ECNT=1;HCNT=8;MAX_ED=.;MIN_ED=.;NLOD=66.74;RPA=5,4;RU=TCT;STR;TLOD=8.72	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:347,4:0.013:3:1:.:11964,144:206:141	0/0:287,2:7.937e-03:0:2:.:10119,71:156:131
chr13	97434437	.	GGGC	G	.	alt_allele_in_normal;str_contraction	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=12.72;RPA=7,6;RU=GGC;STR;TLOD=8.16	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:65,3:0.044:2:1:.:1779,84:35:30	0/0:67,2:0.029:1:1:.:1864,56:37:30
chr13	101090060	.	ATG	A	.	alt_allele_in_normal;str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=16.30;RPA=7,6;RU=TG;STR;TLOD=4.63	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:70,3:0.042:0:3:.:2265,98:45:25	0/0:75,2:0.026:1:1:.:2475,65:39:36
chr13	110211782	.	CAAAG	C	.	alt_allele_in_normal;str_contraction;t_lod_fstar	ECNT=1;HCNT=8;MAX_ED=.;MIN_ED=.;NLOD=17.47;RPA=3,2;RU=AAAG;STR;TLOD=4.70	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:103,2:0.019:0:2:.:3418,69:50:53	0/0:100,3:0.029:1:2:.:3327,105:50:50
chr13	113239564	.	T	G	.	alt_allele_in_normal;t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=13.20;TLOD=5.72	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:95,16:0.084:11:5:0.688:3150,304:58:37	0/0:72,7:0.096:3:4:0.429:2343,42:43:29
chr13	113496041	.	GGA	G	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.58;RPA=7,6;RU=GA;STR;TLOD=4.98	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:6,2:0.286:0:2:.:180,69:3:3	0/0:12,0:0.00:0:0:.:412,0:7:5
chr14	18635503	.	T	C	.	alt_allele_in_normal;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=11.81;TLOD=4.36	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:78,3:0.040:2:1:0.667:2435,95:38:40	0/0:67,2:0.030:2:0:1.00:2133,71:35:32
chr14	18700033	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=4.21;TLOD=5.41	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:10,2:0.167:2:0:1.00:335,68:5:5	0/0:15,0:0.00:0:0:.:512,0:8:7
chr14	19130670	.	T	C	.	alt_allele_in_normal	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=10.25;TLOD=19.11	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:129,8:0.068:3:5:0.375:4369,280:72:57	0/0:122,7:0.060:2:5:0.286:4169,250:67:55
chr14	19181139	.	G	A	.	alt_allele_in_normal	ECNT=1;HCNT=12;MAX_ED=.;MIN_ED=.;NLOD=111.29;TLOD=7.02	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:653,9:0.015:7:2:0.778:20236,286:340:313	0/0:579,21:0.038:10:11:0.476:18195,687:321:258
chr14	19416219	.	T	C	.	alt_allele_in_normal;germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.64;TLOD=8.03	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:8,3:0.273:1:2:0.333:239,94:2:6	0/0:22,1:0.043:0:1:0.00:674,30:7:15
chr14	19670033	.	T	C	.	alt_allele_in_normal;germline_risk	ECNT=1;HCNT=5;MAX_ED=.;MIN_ED=.;NLOD=0.877;TLOD=7.36	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:54,5:0.098:2:3:0.400:1744,143:21:33	0/0:61,4:0.069:4:0:1.00:1955,115:30:31
chr14	19713450	.	T	C	.	alt_allele_in_normal	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=3.13;TLOD=8.50	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:38,5:0.116:3:2:0.600:1177,165:18:20	0/0:92,18:0.175:7:11:0.389:2941,647:34:58
chr14	20343654	.	C	T	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.62;TLOD=5.63	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:37,4:0.088:2:2:0.500:1162,88:21:16	0/0:25,0:0.00:0:0:.:742,0:13:12
chr14	20382632	.	C	T	.	t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=35.51;TLOD=4.71	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:151,3:0.023:1:2:0.667:5200,95:65:86	0/0:137,0:0.00:0:0:.:4775,0:73:64
chr14	21401047	.	T	C	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=8.12;TLOD=4.90	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:36,3:0.056:1:2:0.333:1129,110:21:15	0/0:28,0:0.00:0:0:.:865,0:17:11
chr14	21978639	.	C	T	.	t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=34.01;TLOD=5.50	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:139,3:0.022:3:0:0.00:4559,103:68:71	0/0:120,0:0.00:0:0:.:4003,0:51:69
chr14	22876264	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=35.65;TLOD=5.34	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:167,4:0.025:3:1:0.750:5472,116:82:85	0/0:134,1:7.692e-03:0:1:0.00:4312,29:68:66
chr14	22947267	.	GGC	G	.	clustered_events;homologous_mapping_event;t_lod_fstar	ECNT=10;HCNT=4;MAX_ED=54;MIN_ED=3;NLOD=9.33;TLOD=5.78	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:32,2:0.065:0:2:.:0|1:22947267_GGC_G:1086,66:22:10	0/0:32,0:0.00:0:0:.:0|1:22947267_GGC_G:1063,0:16:16
chr14	22947270	.	A	T	.	clustered_events;homologous_mapping_event;t_lod_fstar	ECNT=10;HCNT=4;MAX_ED=54;MIN_ED=3;NLOD=9.33;TLOD=5.75	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:32,2:0.063:0:2:1.00:0|1:22947267_GGC_G:1025,59:22:10	0/0:33,0:0.00:0:0:.:0|1:22947267_GGC_G:1091,0:17:16
chr14	22947276	.	G	A	.	clustered_events;homologous_mapping_event;t_lod_fstar	ECNT=10;HCNT=4;MAX_ED=54;MIN_ED=3;NLOD=9.63;TLOD=5.87	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:27,2:0.071:0:2:0.00:0|1:22947267_GGC_G:916,58:19:8	0/0:33,0:0.00:0:0:.:0|1:22947267_GGC_G:1074,0:16:17
chr14	22947287	.	C	G	.	clustered_events;homologous_mapping_event;t_lod_fstar	ECNT=10;HCNT=4;MAX_ED=54;MIN_ED=3;NLOD=8.73;TLOD=5.90	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:24,2:0.074:0:2:1.00:0|1:22947287_C_G:834,57:16:8	0/0:30,0:0.00:0:0:.:0|1:22947287_C_G:1062,0:15:15
chr14	22947297	.	G	A	.	clustered_events;homologous_mapping_event;t_lod_fstar	ECNT=10;HCNT=4;MAX_ED=54;MIN_ED=3;NLOD=7.53;TLOD=5.97	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:22,2:0.080:0:2:0.00:0|1:22947287_C_G:745,59:11:11	0/0:24,0:0.00:0:0:.:0|1:22947287_C_G:820,0:13:11
chr14	22947301	.	A	T	.	clustered_events;homologous_mapping_event;t_lod_fstar	ECNT=10;HCNT=4;MAX_ED=54;MIN_ED=3;NLOD=7.53;TLOD=5.97	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:22,2:0.080:0:2:1.00:0|1:22947287_C_G:714,63:11:11	0/0:25,0:0.00:0:0:.:0|1:22947287_C_G:795,0:13:12
chr14	22947306	.	CGT	C	.	clustered_events;homologous_mapping_event;t_lod_fstar	ECNT=10;HCNT=4;MAX_ED=54;MIN_ED=3;NLOD=7.83;TLOD=5.94	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:24,2:0.077:0:2:.:0|1:22947287_C_G:673,54:13:11	0/0:25,0:0.00:0:0:.:0|1:22947287_C_G:698,0:13:12
chr14	22947309	.	A	ACT	.	clustered_events;homologous_mapping_event;t_lod_fstar	ECNT=10;HCNT=4;MAX_ED=54;MIN_ED=3;NLOD=7.53;TLOD=5.94	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:23,2:0.077:0:2:.:0|1:22947287_C_G:761,60:12:11	0/0:23,0:0.00:0:0:.:0|1:22947287_C_G:755,0:13:10
chr14	22947312	.	A	G	.	clustered_events;homologous_mapping_event;t_lod_fstar	ECNT=10;HCNT=4;MAX_ED=54;MIN_ED=3;NLOD=7.22;TLOD=5.97	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:20,2:0.080:0:2:1.00:0|1:22947287_C_G:610,69:10:10	0/0:23,0:0.00:0:0:.:0|1:22947287_C_G:684,0:13:10
chr14	22947321	.	C	T	.	clustered_events;homologous_mapping_event;t_lod_fstar	ECNT=10;HCNT=4;MAX_ED=54;MIN_ED=3;NLOD=6.92;TLOD=6.05	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:20,2:0.087:0:2:1.00:0|1:22947287_C_G:563,60:10:10	0/0:20,0:0.00:0:0:.:0|1:22947287_C_G:570,0:11:9
chr14	23417536	.	TGCA	T	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=42.96;RPA=4,3;RU=GCA;STR;TLOD=4.06	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:253,2:9.132e-03:1:1:.:8319,63:114:139	0/0:164,0:0.00:0:0:.:5344,0:88:76
chr14	23960030	.	CG	C	.	alt_allele_in_normal;t_lod_fstar	ECNT=1;HCNT=32;MAX_ED=.;MIN_ED=.;NLOD=37.54;RPA=8,7;RU=G;STR;TLOD=4.50	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:203,8:0.017:3:5:.:3799,189:93:100	0/0:164,5:0.013:1:4:.:3056,136:89:65
chr14	24163922	.	GAGC	G	.	alt_allele_in_normal;str_contraction	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=17.27;RPA=7,6;RU=AGC;STR;TLOD=23.14	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:98,8:0.084:5:3:.:3279,269:51:47	0/0:89,2:0.023:2:0:.:2972,69:48:41
chr14	24323110	.	A	G	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=9.03;TLOD=4.31	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:30,2:0.063:1:1:0.500:985,66:16:14	0/0:33,0:0.00:0:0:.:1098,0:14:19
chr14	34524653	.	A	ATGTGTGTGTG	.	alt_allele_in_normal;triallelic_site	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=3.83;TLOD=9.61	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:19,17:0.140:4:4:.:567,248:9:10	0/0:37,6:0.035:2:2:.:1067,118:21:15
chr14	35401891	.	C	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.82;TLOD=4.38	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:17,2:0.105:0:2:1.00:586,62:10:7	0/0:16,0:0.00:0:0:.:542,0:12:4
chr14	36320607	.	CCCA	C	.	str_contraction	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=14.09;RPA=6,5;RU=CCA;STR;TLOD=9.10	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:38,3:0.088:3:0:.:1304,101:17:21	0/0:49,0:0.00:0:0:.:1654,0:19:30
chr14	37248018	.	GCA	G	.	alt_allele_in_normal;str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.91;RPA=7,6;RU=CA;STR;TLOD=4.04	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:21,2:0.087:1:1:.:726,70:14:7	0/0:27,1:0.036:1:0:.:907,34:13:14
chr14	45159080	.	TTA	T	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.60;RPA=7,6;RU=TA;STR;TLOD=4.70	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:10,2:0.167:0:2:.:333,66:6:4	0/0:15,0:0.00:0:0:.:481,0:7:8
chr14	49927873	rs10162596	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=10.83	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:0,3:1.00:1:2:0.333:0,94:0:0	0/0:4,0:0.00:0:0:.:138,0:3:1
chr14	50595518	.	TTCTCTC	T	.	germline_risk	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.60;RPA=12,9;RU=TC;STR;TLOD=12.69	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:15,6:0.158:3:0:.:233,94:5:3	0/0:29,5:0.074:0:0:.:522,0:8:9
chr14	52519384	.	T	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.21;TLOD=4.08	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:15,2:0.118:1:1:0.500:471,58:4:11	0/0:14,0:0.00:0:0:.:421,0:10:4
chr14	54987437	.	C	CATATAT	.	germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.59;RPA=7,10;RU=AT;STR;TLOD=6.68	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:9,2:0.182:2:0:.:311,65:5:4	0/0:5,0:0.00:0:0:.:168,0:4:1
chr14	55142740	.	A	G	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=14.14;TLOD=4.08	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:59,2:0.034:1:1:0.500:1872,69:26:33	0/0:48,0:0.00:0:0:.:1505,0:24:24
chr14	58521307	.	C	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=17.46;TLOD=4.21	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:76,1:0.027:1:0:0.00:2628,15:34:42	0/0:58,0:0.00:0:0:.:1996,0:29:29
chr14	61485347	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=12.34;TLOD=4.23	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:33,2:0.057:1:1:0.500:1065,66:19:14	0/0:41,0:0.00:0:0:.:1393,0:23:18
chr14	61547724	.	TTC	T	.	alt_allele_in_normal;str_contraction	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=94.11;RPA=6,5;RU=TC;STR;TLOD=7.20	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:417,5:0.013:2:3:.:13703,169:232:185	0/0:365,2:5.935e-03:2:0:.:12179,66:201:164
chr14	64268986	.	T	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=7.82;TLOD=4.63	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:29,2:0.065:1:1:0.500:945,69:13:16	0/0:26,0:0.00:0:0:.:822,0:15:11
chr14	64793101	rs12433436	G	A	.	t_lod_fstar	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=21.27;TLOD=5.23	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:85,4:0.036:4:0:1.00:2569,127:41:44	0/0:74,0:0.00:0:0:.:2206,0:35:39
chr14	68796209	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=35.50;TLOD=4.13	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:154,4:0.021:3:1:0.750:4989,126:98:56	0/0:130,0:0.00:0:0:.:4287,0:72:58
chr14	68887656	.	A	T	.	germline_risk;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=5.35	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,2:0.500:0:2:1.00:55,66:1:1	0/0:4,0:0.00:0:0:.:123,0:2:2
chr14	70247065	.	A	G	.	alt_allele_in_normal;germline_risk	ECNT=1;HCNT=6;MAX_ED=.;MIN_ED=.;NLOD=1.01;TLOD=8.54	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:116,6:0.058:4:2:0.333:3910,211:60:56	0/0:106,16:0.129:5:11:0.688:3554,571:55:51
chr14	70437887	rs72735744	C	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=9.47	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,3:0.600:1:2:0.667:68,95:1:1	0/0:4,0:0.00:0:0:.:140,0:3:1
chr14	70457786	.	G	A	.	alt_allele_in_normal;t_lod_fstar	ECNT=1;HCNT=12;MAX_ED=.;MIN_ED=.;NLOD=26.91;TLOD=4.07	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:80,3:0.038:3:0:1.00:2492,93:42:38	0/0:112,3:0.027:1:2:0.333:3465,99:69:43
chr14	71073525	.	GCT	G	.	alt_allele_in_normal;str_contraction	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=12.88;RPA=8,7;RU=CT;STR;TLOD=9.71	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:106,6:0.060:4:2:.:3722,218:60:46	0/0:89,4:0.046:2:2:.:3050,130:47:42
chr14	71723764	.	TTCC	T	.	alt_allele_in_normal;str_contraction	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=34.01;RPA=4,3;RU=TCC;STR;TLOD=6.95	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:184,4:0.018:3:1:.:6110,138:97:87	0/0:141,2:0.014:1:1:.:4597,64:62:79
chr14	73860467	.	AAAT	A	.	alt_allele_in_normal;germline_risk;str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.918;RPA=6,5;RU=AAT;STR;TLOD=6.28	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:16,2:0.111:2:0:.:471,65:9:7	0/0:17,1:0.056:1:0:.:543,32:7:10
chr14	76807425	.	T	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.91;TLOD=4.19	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:19,2:0.095:0:2:0.00:600,61:13:6	0/0:14,0:0.00:0:0:.:466,0:7:7
chr14	77240547	.	G	C	.	PASS	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=12.03;TLOD=7.41	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:37,3:0.081:1:2:0.333:1080,105:18:19	0/0:41,0:0.00:0:0:.:1222,0:23:18
chr14	77244090	rs2287381	G	T	.	germline_risk;t_lod_fstar	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=5.87	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:3,2:0.400:1:1:0.500:101,64:1:2	0/0:4,0:0.00:0:0:.:124,0:3:1
chr14	78968115	.	T	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=8.68;TLOD=4.13	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:33,2:0.057:2:0:1.00:1022,65:19:14	0/0:29,0:0.00:0:0:.:884,0:19:10
chr14	79257585	.	A	T	.	alt_allele_in_normal;germline_risk;t_lod_fstar	ECNT=2;HCNT=1;MAX_ED=1;MIN_ED=1;NLOD=0.776;TLOD=4.50	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:0,1:1.00:1:0:0.00:0|1:79257585_A_T:0,32:0:0	0/0:7,1:0.125:1:0:0.00:0|1:79257585_A_T:167,21:7:0
chr14	79257586	.	A	G	.	alt_allele_in_normal;germline_risk;t_lod_fstar	ECNT=2;HCNT=1;MAX_ED=1;MIN_ED=1;NLOD=0.776;TLOD=4.50	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:0,1:1.00:1:0:0.00:0|1:79257585_A_T:0,34:0:0	0/0:6,1:0.125:1:0:0.00:0|1:79257585_A_T:177,21:6:0
chr14	89163046	rs3742680	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=11.17	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:10,4:0.286:1:3:0.250:337,129:7:3	0/0:4,0:0.00:0:0:.:134,0:1:3
chr14	92000140	.	AAC	A	.	alt_allele_in_normal;germline_risk;str_contraction	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.98;RPA=7,6;RU=AC;STR;TLOD=8.32	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:20,4:0.200:3:1:.:670,125:11:9	0/0:20,1:0.056:1:0:.:673,29:9:11
chr14	92161624	.	TA	T	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.42;RPA=3,2;RU=A;STR;TLOD=4.06	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:24,2:0.087:0:2:.:796,67:15:9	0/0:19,0:0.00:0:0:.:621,0:4:15
chr14	95126822	.	CAAAA	C	.	t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=2.32;RPA=14,10;RU=A;STR;TLOD=4.44	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:11,5:0.156:2:0:.:9,65:0:1	0/0:12,1:0.031:0:0:.:25,0:0:1
chr14	100097332	rs941895	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=7.12	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,2:0.667:0:2:0.00:35,70:0:1	0/0:4,0:0.00:0:0:.:135,0:3:1
chr14	101023764	.	GCCA	G	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=11.12;RPA=5,4;RU=CCA;STR;TLOD=5.55	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:42,2:0.050:1:1:.:1432,72:21:21	0/0:38,0:0.00:0:0:.:1311,0:14:24
chr14	101027141	.	T	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=25.88;TLOD=4.59	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:109,3:0.030:0:3:0.00:3633,97:65:44	0/0:97,0:0.00:0:0:.:3241,0:47:50
chr14	101061903	.	TAG	T	.	str_contraction	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=8.10;RPA=8,7;RU=AG;STR;TLOD=21.73	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:19,9:0.321:6:3:.:519,228:8:11	0/0:27,0:0.00:0:0:.:741,0:14:13
chr14	102033473	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=21.07;TLOD=4.38	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:83,3:0.037:1:2:0.333:2815,85:39:44	0/0:71,0:0.00:0:0:.:2403,0:31:40
chr14	103669437	.	A	AAAAG	.	germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.10;TLOD=21.22	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:23,7:0.107:0:0:.:660,0:13:7	0/0:16,1:0.024:0:0:.:275,0:5:3
chr14	104894832	.	A	C	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.63;TLOD=5.20	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:22,13:0.371:5:8:0.615:535,80:7:15	0/0:15,2:0.125:2:0:0.00:356,7:6:9
chr14	104943304	.	C	T	.	t_lod_fstar	ECNT=1;HCNT=28;MAX_ED=.;MIN_ED=.;NLOD=66.67;TLOD=5.05	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:422,5:0.010:2:3:0.600:14059,160:229:193	0/0:237,0:0.00:0:0:.:7944,0:126:111
chr14	104945620	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=4;HCNT=4;MAX_ED=52;MIN_ED=14;NLOD=22.71;TLOD=217.56	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:179,64:0.272:27:37:0.422:0|1:104945620_G_A:5603,2036:93:86	0/0:173,7:0.040:2:5:0.286:0|1:104945620_G_A:5472,228:96:77
chr14	104945634	.	T	C	.	alt_allele_in_normal;clustered_events	ECNT=4;HCNT=4;MAX_ED=52;MIN_ED=14;NLOD=29.87;TLOD=186.25	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:187,52:0.229:22:30:0.423:0|1:104945620_G_A:6044,1495:98:89	0/0:174,5:0.029:0:5:0.00:0|1:104945620_G_A:5611,151:101:73
chr14	104945668	.	A	G	.	alt_allele_in_normal;clustered_events	ECNT=4;HCNT=6;MAX_ED=52;MIN_ED=14;NLOD=8.83;TLOD=99.92	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:156,30:0.180:15:15:0.500:0|1:104945668_A_G:4909,931:77:79	0/0:168,10:0.056:5:5:0.500:0|1:104945668_A_G:5362,311:91:77
chr14	104945672	.	A	G	.	alt_allele_in_normal;clustered_events	ECNT=4;HCNT=6;MAX_ED=52;MIN_ED=14;NLOD=8.88;TLOD=103.27	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:155,33:0.186:13:20:0.606:0|1:104945668_A_G:4889,1007:80:75	0/0:165,10:0.056:5:5:0.500:0|1:104945668_A_G:5208,308:92:73
chr14	104945801	.	A	G	.	alt_allele_in_normal;clustered_events	ECNT=2;HCNT=3;MAX_ED=25;MIN_ED=25;NLOD=24.42;TLOD=54.54	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:148,20:0.119:9:11:0.550:0|1:104945801_A_G:4792,670:80:68	0/0:123,3:0.024:1:2:0.667:0|1:104945801_A_G:3989,104:68:55
chr14	104945826	.	C	G	.	alt_allele_in_normal;clustered_events	ECNT=2;HCNT=3;MAX_ED=25;MIN_ED=25;NLOD=23.45;TLOD=38.03	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:145,15:0.093:9:6:0.400:0|1:104945801_A_G:4548,468:82:63	0/0:126,4:0.030:2:2:0.500:0|1:104945801_A_G:3934,126:68:58
chr14	104945888	.	T	G	.	clustered_events;homologous_mapping_event	ECNT=3;HCNT=2;MAX_ED=35;MIN_ED=34;NLOD=55.92;TLOD=19.18	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:195,11:0.056:8:3:0.727:6084,374:95:100	0/0:191,0:0.00:0:0:.:5914,0:100:91
chr14	104945922	.	G	C	.	clustered_events;homologous_mapping_event;t_lod_fstar	ECNT=3;HCNT=2;MAX_ED=35;MIN_ED=34;NLOD=73.40;TLOD=4.03	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:225,2:8.850e-03:2:0:1.00:0|1:104945922_G_C:7785,63:104:121	0/0:246,0:0.00:0:0:.:0|1:104945922_G_C:8479,0:128:118
chr14	104945923	.	G	T	.	clustered_events;homologous_mapping_event;t_lod_fstar	ECNT=3;HCNT=2;MAX_ED=35;MIN_ED=34;NLOD=72.84;TLOD=4.04	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:231,2:8.929e-03:2:0:1.00:0|1:104945922_G_C:7788,55:107:124	0/0:253,0:0.00:0:0:.:0|1:104945922_G_C:8505,0:131:122
chr14	104946204	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=4;HCNT=48;MAX_ED=20;MIN_ED=1;NLOD=32.60;TLOD=164.75	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:179,46:0.230:24:22:0.478:0|1:104946204_C_T:6209,1399:96:83	0/0:195,6:0.030:3:3:0.500:0|1:104946204_C_T:6785,194:111:84
chr14	104946205	.	A	G	.	alt_allele_in_normal;clustered_events	ECNT=4;HCNT=48;MAX_ED=20;MIN_ED=1;NLOD=33.50;TLOD=172.26	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:178,45:0.235:25:20:0.444:0|1:104946204_C_T:5680,1439:97:81	0/0:196,6:0.030:3:3:0.500:0|1:104946204_C_T:6298,210:112:84
chr14	104946217	.	T	G	.	alt_allele_in_normal;clustered_events	ECNT=4;HCNT=48;MAX_ED=20;MIN_ED=1;NLOD=26.93;TLOD=143.31	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:178,40:0.199:23:17:0.575:0|1:104946204_C_T:5522,1331:99:79	0/0:196,7:0.039:2:5:0.286:0|1:104946204_C_T:6127,224:112:84
chr14	104946224	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=4;HCNT=48;MAX_ED=20;MIN_ED=1;NLOD=20.78;TLOD=148.97	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:188,41:0.204:20:21:0.512:0|1:104946204_C_T:5774,1285:108:80	0/0:193,9:0.046:5:4:0.444:0|1:104946204_C_T:5902,271:108:85
chr14	104948863	.	G	C	.	alt_allele_in_normal;clustered_events;germline_risk	ECNT=5;HCNT=38;MAX_ED=90;MIN_ED=29;NLOD=1.92;TLOD=240.87	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:184,87:0.312:43:44:0.494:6483,3031:100:84	0/0:185,15:0.073:10:5:0.667:6405,529:100:85
chr14	104948892	.	T	C	.	alt_allele_in_normal;clustered_events	ECNT=5;HCNT=38;MAX_ED=90;MIN_ED=29;NLOD=29.12;TLOD=127.32	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:225,59:0.213:30:29:0.508:7203,1647:120:105	0/0:198,10:0.049:6:4:0.600:6330,275:89:109
chr14	104948942	.	T	C	.	clustered_events;multi_event_alt_allele_in_normal	ECNT=5;HCNT=38;MAX_ED=90;MIN_ED=29;NLOD=75.87;TLOD=25.72	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:336,10:0.032:6:4:0.600:0|1:104948942_T_C:11228,346:176:160	0/0:278,1:3.745e-03:0:1:0.00:0|1:104948942_T_C:9281,32:128:150
chr14	104948944	.	G	C	.	clustered_events;multi_event_alt_allele_in_normal	ECNT=5;HCNT=38;MAX_ED=90;MIN_ED=29;NLOD=77.38;TLOD=25.57	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:344,10:0.030:6:4:0.600:0|1:104948942_T_C:12048,327:179:165	0/0:284,1:3.676e-03:0:1:0.00:0|1:104948942_T_C:9860,33:131:153
chr14	104948953	.	A	C	.	clustered_events;homologous_mapping_event	ECNT=5;HCNT=38;MAX_ED=90;MIN_ED=29;NLOD=86.39;TLOD=11.31	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:353,2:0.016:1:1:0.500:0|1:104948942_T_C:11530,60:184:169	0/0:301,0:0.00:0:0:.:0|1:104948942_T_C:9784,0:141:160
chr14	104949883	.	T	G	.	alt_allele_in_normal;clustered_events	ECNT=2;HCNT=1;MAX_ED=3;MIN_ED=3;NLOD=43.79;TLOD=36.56	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:491,14:0.030:8:6:0.571:0|1:104949883_T_G:0,400:0:0	0/0:295,7:0.023:6:0:1.00:0|1:104949883_T_G:34,172:1:0
chr14	104949886	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=2;HCNT=1;MAX_ED=3;MIN_ED=3;NLOD=65.93;TLOD=30.72	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:526,17:0.027:10:7:0.588:0|1:104949883_T_G:15484,542:248:278	0/0:311,7:0.020:6:1:0.857:0|1:104949883_T_G:9113,224:164:147
chr14	104949986	.	T	C	.	alt_allele_in_normal;clustered_events	ECNT=3;HCNT=2;MAX_ED=57;MIN_ED=44;NLOD=84.60;TLOD=81.51	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:767,53:0.056:27:26:0.509:25689,1818:381:386	0/0:428,15:0.030:12:3:0.800:14344,482:221:207
chr14	104950030	.	A	C	.	alt_allele_in_normal;clustered_events	ECNT=3;HCNT=2;MAX_ED=57;MIN_ED=44;NLOD=71.82;TLOD=29.77	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:617,14:0.023:4:10:0.714:0|1:104950030_A_C:18115,474:285:332	0/0:287,3:0.010:1:2:0.667:0|1:104950030_A_C:8463,104:167:120
chr14	104950043	.	A	G	.	alt_allele_in_normal;clustered_events	ECNT=3;HCNT=2;MAX_ED=57;MIN_ED=44;NLOD=65.85;TLOD=24.06	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:591,8:0.019:3:5:0.625:0|1:104950030_A_C:18051,278:282:309	0/0:260,3:0.011:1:2:0.667:0|1:104950030_A_C:7947,104:149:111
chr14	104950885	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=4;HCNT=3;MAX_ED=21;MIN_ED=3;NLOD=25.24;TLOD=277.20	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:286,86:0.234:39:47:0.547:0|1:104950885_C_T:9648,2785:160:126	0/0:260,17:0.057:7:10:0.588:0|1:104950885_C_T:8751,549:136:124
chr14	104950888	.	C	G	.	alt_allele_in_normal;clustered_events	ECNT=4;HCNT=3;MAX_ED=21;MIN_ED=3;NLOD=26.31;TLOD=291.31	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:283,77:0.230:35:42:0.545:0|1:104950885_C_T:9242,2511:157:126	0/0:265,13:0.054:6:7:0.538:0|1:104950885_C_T:8521,451:138:127
chr14	104950891	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=4;HCNT=3;MAX_ED=21;MIN_ED=3;NLOD=31.61;TLOD=286.69	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:292,81:0.228:40:41:0.506:0|1:104950885_C_T:9340,2465:159:133	0/0:272,14:0.049:6:8:0.571:0|1:104950885_C_T:8459,407:146:126
chr14	104950906	.	T	C	.	alt_allele_in_normal;clustered_events	ECNT=4;HCNT=3;MAX_ED=21;MIN_ED=3;NLOD=42.67;TLOD=222.11	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:287,67:0.211:34:33:0.507:0|1:104950885_C_T:9382,1907:150:137	0/0:289,12:0.042:3:9:0.250:0|1:104950885_C_T:9366,343:156:133
chr14	104954590	rs879210	A	G	.	PASS	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.91;TLOD=37.72	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:11,11:0.500:7:4:0.364:344,391:6:5	0/0:13,0:0.00:0:0:.:434,0:5:8
chr14	105355051	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.27;TLOD=4.54	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:44,2:0.047:1:1:0.500:1521,71:19:25	0/0:22,0:0.00:0:0:.:704,0:9:13
chr15	19943332	.	C	G	.	t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=7.46;TLOD=4.83	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:43,2:0.051:1:1:0.500:1492,73:26:17	0/0:47,1:0.024:0:1:1.00:1677,38:23:24
chr15	19987955	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=3;HCNT=10;MAX_ED=34;MIN_ED=33;NLOD=21.54;TLOD=10.53	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:212,6:0.030:2:4:0.667:7249,203:93:119	0/0:180,7:0.042:2:5:0.714:6117,235:79:101
chr15	19987988	.	C	A	.	alt_allele_in_normal;clustered_events	ECNT=3;HCNT=8;MAX_ED=34;MIN_ED=33;NLOD=9.44;TLOD=37.00	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:211,13:0.059:9:4:0.308:0|1:19987988_C_A:7181,414:90:121	0/0:182,11:0.060:4:7:0.636:0|1:19987988_C_A:6228,348:72:110
chr15	19987989	.	T	A	.	alt_allele_in_normal;clustered_events	ECNT=3;HCNT=8;MAX_ED=34;MIN_ED=33;NLOD=10.34;TLOD=36.90	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:208,13:0.058:9:4:0.692:0|1:19987988_C_A:6735,425:91:117	0/0:181,10:0.059:3:7:0.300:0|1:19987988_C_A:5910,324:72:109
chr15	20003859	.	C	T	.	t_lod_fstar	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=8.43;TLOD=4.43	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:23,2:0.087:1:1:0.500:769,65:13:10	0/0:49,0:0.00:0:0:.:1701,0:27:22
chr15	20239778	.	G	C	.	germline_risk	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=7.75	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:0,2:1.00:2:0:1.00:0,68:0:0	0/0:4,0:0.00:0:0:.:135,0:2:2
chr15	20248737	.	G	T	.	alt_allele_in_normal	ECNT=1;HCNT=3;MAX_ED=.;MIN_ED=.;NLOD=5.25;TLOD=6.40	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:24,3:0.115:2:1:0.667:847,98:11:13	0/0:35,1:0.031:1:0:1.00:1213,33:21:14
chr15	20284057	.	A	G	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.01;TLOD=5.98	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:8,2:0.200:1:1:0.500:269,72:5:3	0/0:10,0:0.00:0:0:.:343,0:5:5
chr15	25062302	.	T	G	.	alt_allele_in_normal	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=4.27;TLOD=14.91	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:105,42:0.290:14:28:0.333:2707,282:63:42	0/0:89,27:0.245:11:16:0.407:2442,119:48:41
chr15	25687571	.	ACAGGCGAAGGAGGATGGAGCAGGTTGTCCATGGCCTCCCATCTGCTCCATCCTCCTTCGCCTCATT	A	.	alt_allele_in_normal	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=5.02;TLOD=13.86	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:149,10:0.045:3:7:.:4513,322:65:84	0/0:133,12:0.070:4:8:.:4103,385:60:73
chr15	25721543	.	CGTGTGTGTGT	C	.	alt_allele_in_normal;germline_risk	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.24;RPA=21,16;RU=GT;STR;TLOD=10.44	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:13,6:0.231:1:3:.:69,134:2:0	0/0:17,2:0.095:0:1:.:34,34:0:1
chr15	28385212	.	A	C	.	alt_allele_in_normal;germline_risk;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.16;TLOD=4.85	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,2:0.500:2:0:0.00:61,51:2:0	0/0:65,3:0.047:1:2:0.667:1616,61:33:32
chr15	34101789	.	TAGC	T	.	alt_allele_in_normal;str_contraction	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=24.06;RPA=5,4;RU=AGC;STR;TLOD=7.34	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:145,4:0.023:0:4:.:4297,128:64:81	0/0:142,5:0.024:3:2:.:4258,138:58:84
chr15	34896852	.	AAAAC	A	.	str_contraction	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.90;RPA=6,5;RU=AAAC;STR;TLOD=6.45	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:14,2:0.133:2:0:.:446,64:5:9	0/0:24,0:0.00:0:0:.:783,0:10:14
chr15	35084946	.	A	G	.	alt_allele_in_normal;t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=22.54;TLOD=4.72	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:201,5:0.026:2:3:0.600:6772,167:98:103	0/0:204,10:0.051:5:5:0.500:6811,322:103:101
chr15	37093764	.	ATGT	A	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=3;MAX_ED=.;MIN_ED=.;NLOD=34.11;RPA=6,5;RU=TGT;STR;TLOD=4.54	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:143,2:0.016:1:1:.:4671,63:80:63	0/0:125,0:0.00:0:0:.:4107,0:64:61
chr15	40737725	.	A	C	.	germline_risk	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.70;TLOD=7.13	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:29,14:0.306:10:4:0.286:654,94:12:17	0/0:20,6:0.231:5:1:0.167:509,11:9:11
chr15	41262776	.	G	A	.	PASS	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=47.84;TLOD=10.10	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:228,7:0.030:5:2:0.714:7083,220:115:113	0/0:180,0:0.00:0:0:.:5644,0:112:68
chr15	41476300	.	GCT	G	.	alt_allele_in_normal;germline_risk;str_contraction	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.712;RPA=7,6;RU=CT;STR;TLOD=6.54	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:22,3:0.120:1:2:.:625,84:11:11	0/0:13,1:0.071:1:0:.:361,29:6:7
chr15	41565143	.	T	TGACAC	.	PASS	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=10.28;TLOD=24.30	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:39,8:0.174:6:2:.:1175,237:22:17	0/0:51,1:0.020:1:0:.:1548,31:25:26
chr15	42082403	.	ATCAT	A	.	str_contraction	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=7.65;RPA=6,5;RU=TCAT;STR;TLOD=11.78	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:26,4:0.143:2:2:.:855,126:12:14	0/0:28,0:0.00:0:0:.:908,0:17:11
chr15	42226890	.	A	C	.	alt_allele_in_normal	ECNT=1;HCNT=12;MAX_ED=.;MIN_ED=.;NLOD=8.08;TLOD=10.65	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:88,48:0.355:18:30:0.625:2344,114:37:51	0/0:84,23:0.217:11:12:0.522:2008,49:32:52
chr15	43235292	.	GGGAA	G	.	germline_risk;str_contraction	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.49;RPA=5,4;RU=GGAA;STR;TLOD=7.18	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:5,2:0.286:1:1:.:166,71:2:3	0/0:5,0:0.00:0:0:.:165,0:2:3
chr15	43632153	.	CTA	C	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=16.22;RPA=5,4;RU=TA;STR;TLOD=6.23	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:70,3:0.046:2:1:.:2384,102:31:39	0/0:59,0:0.00:0:0:.:2012,0:25:34
chr15	43776824	.	C	A	.	t_lod_fstar	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=7.83;TLOD=4.37	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:22,2:0.083:0:2:1.00:750,64:10:12	0/0:27,0:0.00:0:0:.:949,0:13:14
chr15	44850464	.	A	G	.	germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=7.95	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,3:0.750:0:3:1.00:31,99:0:1	0/0:4,0:0.00:0:0:.:130,0:3:1
chr15	44914706	.	C	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=9.97	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,3:0.600:0:3:1.00:70,100:1:1	0/0:5,0:0.00:0:0:.:154,0:1:4
chr15	44978761	rs16976876	T	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=9.25	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,3:0.750:2:1:0.667:32,88:0:1	0/0:6,0:0.00:0:0:.:192,0:4:2
chr15	50254736	.	TTTTCTC	T	.	alt_allele_in_normal;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.46;TLOD=5.31	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:12,5:0.294:2:3:.:398,170:6:6	0/0:17,1:0.056:1:0:.:577,32:9:8
chr15	50497004	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=11.74;TLOD=4.05	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:36,2:0.053:2:0:1.00:1283,65:15:21	0/0:39,0:0.00:0:0:.:1380,0:16:23
chr15	51565023	rs11070857	C	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=9.43	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,3:0.600:1:2:0.667:66,95:2:0	0/0:5,0:0.00:0:0:.:176,0:3:2
chr15	52376356	.	T	C	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=9.03;TLOD=4.35	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:41,2:0.053:2:0:1.00:1347,68:24:17	0/0:31,0:0.00:0:0:.:1020,0:20:11
chr15	59208031	.	A	C	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=4;HCNT=8;MAX_ED=10;MIN_ED=1;NLOD=14.50;TLOD=4.35	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:170,2:0.013:1:1:0.500:0|1:59208031_A_C:5463,70:89:81	0/0:138,3:0.045:2:1:0.333:0|1:59208031_A_C:4404,98:76:62
chr15	59208032	.	T	C	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=4;HCNT=8;MAX_ED=10;MIN_ED=1;NLOD=26.23;TLOD=4.35	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:167,2:0.013:1:1:0.500:0|1:59208031_A_C:5370,69:87:80	0/0:135,3:0.023:2:1:0.667:0|1:59208031_A_C:4361,97:75:60
chr15	59208039	.	A	G	.	clustered_events;homologous_mapping_event;t_lod_fstar	ECNT=4;HCNT=8;MAX_ED=10;MIN_ED=1;NLOD=34.32;TLOD=4.42	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:155,2:0.014:1:1:0.500:0|1:59208031_A_C:5232,69:79:76	0/0:124,0:0.00:0:0:.:0|1:59208031_A_C:4146,0:68:56
chr15	59208041	.	A	G	.	clustered_events;homologous_mapping_event;t_lod_fstar	ECNT=4;HCNT=8;MAX_ED=10;MIN_ED=1;NLOD=32.51;TLOD=4.47	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:152,2:0.015:1:1:0.500:0|1:59208031_A_C:5088,69:76:76	0/0:123,0:0.00:0:0:.:0|1:59208031_A_C:4126,0:68:55
chr15	60627435	.	T	C	.	t_lod_fstar	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=20.16;TLOD=4.31	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:81,3:0.025:2:1:0.667:2526,108:44:37	0/0:67,0:0.00:0:0:.:2104,0:30:37
chr15	62835668	.	T	C	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=19.82;TLOD=4.02	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:60,2:0.032:1:1:0.500:1977,69:33:27	0/0:66,0:0.00:0:0:.:2109,0:31:35
chr15	65625838	.	CCTG	C	.	alt_allele_in_normal;str_contraction	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=9.30;RPA=5,4;RU=CTG;STR;TLOD=7.37	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:126,3:0.024:1:2:.:4308,95:70:56	0/0:104,5:0.047:1:4:.:3527,176:55:49
chr15	68311097	.	GAC	G	.	str_contraction	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.91;RPA=6,5;RU=AC;STR;TLOD=7.66	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:13,3:0.188:2:1:.:455,109:6:7	0/0:14,0:0.00:0:0:.:502,0:4:10
chr15	73288149	.	CTTG	C	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=7.52;RPA=8,7;RU=TTG;STR;TLOD=5.69	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:20,2:0.091:0:2:.:642,67:14:6	0/0:25,0:0.00:0:0:.:835,0:12:13
chr15	75265543	.	A	G	.	alt_allele_in_normal;clustered_events;germline_risk	ECNT=2;HCNT=1;MAX_ED=8;MIN_ED=8;NLOD=1.51;TLOD=7.80	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:2,2:0.500:0:2:1.00:0|1:75265543_A_G:62,70:0:2	0/0:171,4:0.022:3:1:0.250:0|1:75265543_A_G:5491,135:88:83
chr15	75265551	.	T	G	.	alt_allele_in_normal;clustered_events;germline_risk	ECNT=2;HCNT=1;MAX_ED=8;MIN_ED=8;NLOD=1.20;TLOD=7.80	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:2,2:0.500:0:2:0.00:0|1:75265543_A_G:66,67:0:2	0/0:189,4:0.020:3:1:0.750:0|1:75265543_A_G:6085,95:98:91
chr15	75348826	.	C	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.92;TLOD=4.63	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:26,2:0.071:2:0:0.00:891,68:15:11	0/0:23,0:0.00:0:0:.:759,0:11:12
chr15	75375900	.	GA	G	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=31.31;TLOD=4.73	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:99,1:0.020:1:0:.:3451,34:57:42	0/0:103,0:0.00:0:0:.:3608,0:44:59
chr15	75598271	rs3210683	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.51;TLOD=8.53	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:5,3:0.375:1:2:0.333:180,94:4:1	0/0:5,0:0.00:0:0:.:185,0:1:4
chr15	75687199	.	G	A	.	alt_allele_in_normal	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=23.48;TLOD=8.30	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:118,5:0.042:0:5:0.00:3316,154:57:61	0/0:103,2:0.019:1:1:0.500:2877,65:50:53
chr15	75785681	.	T	G	.	alt_allele_in_normal	ECNT=1;HCNT=24;MAX_ED=.;MIN_ED=.;NLOD=2.49;TLOD=14.06	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:64,4:0.075:3:1:0.750:2049,113:26:38	0/0:66,3:0.059:1:2:0.333:2138,102:31:35
chr15	76260198	.	T	TTCA	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=7;HCNT=8;MAX_ED=77;MIN_ED=4;NLOD=6.07;TLOD=4.83	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:100,1:0.022:0:1:.:0|1:76260198_T_TTCA:3278,30:48:52	0/0:65,3:0.046:1:2:.:0|1:76260198_T_TTCA:2147,93:37:28
chr15	76260202	.	CTGT	C	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=7;HCNT=8;MAX_ED=77;MIN_ED=4;NLOD=8.77;TLOD=4.77	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:104,2:0.021:1:1:.:0|1:76260198_T_TTCA:3607,63:49:55	0/0:72,3:0.041:1:2:.:0|1:76260198_T_TTCA:2465,104:43:29
chr15	76260219	.	T	G	.	alt_allele_in_normal;clustered_events	ECNT=7;HCNT=8;MAX_ED=77;MIN_ED=4;NLOD=7.09;TLOD=7.75	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:96,3:0.032:2:1:0.667:3188,104:47:49	0/0:63,3:0.045:1:2:0.333:2087,98:40:23
chr15	76260239	.	A	G	.	alt_allele_in_normal;clustered_events	ECNT=7;HCNT=8;MAX_ED=77;MIN_ED=4;NLOD=9.66;TLOD=7.85	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:86,3:0.035:2:1:0.333:0|1:76260239_A_G:2689,87:40:46	0/0:62,2:0.032:1:1:0.500:0|1:76260239_A_G:1940,68:35:27
chr15	76260242	.	T	C	.	alt_allele_in_normal;clustered_events	ECNT=7;HCNT=8;MAX_ED=77;MIN_ED=4;NLOD=10.26;TLOD=7.85	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:88,3:0.035:2:1:0.667:0|1:76260239_A_G:2838,96:41:47	0/0:63,2:0.031:1:1:0.500:0|1:76260239_A_G:2083,56:35:28
chr15	76260253	.	T	C	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=7;HCNT=8;MAX_ED=77;MIN_ED=4;NLOD=10.86;TLOD=4.90	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:88,2:0.024:2:0:1.00:2846,60:41:47	0/0:65,1:0.030:1:0:1.00:2151,21:35:30
chr15	76260275	.	A	G	.	clustered_events;homologous_mapping_event;t_lod_fstar	ECNT=7;HCNT=8;MAX_ED=77;MIN_ED=4;NLOD=20.47;TLOD=4.98	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:85,2:0.026:2:0:0.00:2751,60:39:46	0/0:75,0:0.00:0:0:.:2460,0:38:37
chr15	76261332	.	G	C	.	alt_allele_in_normal;clustered_events;germline_risk	ECNT=2;HCNT=16;MAX_ED=7;MIN_ED=7;NLOD=2.14;TLOD=19.15	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:19,6:0.231:3:3:0.500:0|1:76261332_G_C:633,163:10:9	0/0:35,2:0.054:1:1:0.500:0|1:76261332_G_C:1177,56:17:18
chr15	76261339	.	G	A	.	alt_allele_in_normal;clustered_events;germline_risk	ECNT=2;HCNT=16;MAX_ED=7;MIN_ED=7;NLOD=1.49;TLOD=17.17	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:19,5:0.208:2:3:0.400:0|1:76261332_G_C:601,152:7:12	0/0:32,2:0.057:1:1:0.500:0|1:76261332_G_C:933,57:16:16
chr15	76336952	.	CTG	C	.	alt_allele_in_normal;str_contraction;t_lod_fstar	ECNT=1;HCNT=6;MAX_ED=.;MIN_ED=.;NLOD=57.47;RPA=6,5;RU=TG;STR;TLOD=5.17	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:282,4:0.016:1:3:.:9902,143:170:112	0/0:237,2:9.302e-03:1:1:.:8295,69:138:99
chr15	77985965	.	A	G	.	clustered_events;homologous_mapping_event;t_lod_fstar	ECNT=3;HCNT=22;MAX_ED=78;MIN_ED=17;NLOD=12.64;TLOD=4.66	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:31,2:0.067:0:2:1.00:964,69:14:17	0/0:42,0:0.00:0:0:.:1350,0:26:16
chr15	77985982	.	T	C	.	clustered_events;homologous_mapping_event;t_lod_fstar	ECNT=3;HCNT=16;MAX_ED=78;MIN_ED=17;NLOD=12.64;TLOD=4.10	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:27,3:0.069:0:3:0.00:835,98:8:19	0/0:42,0:0.00:0:0:.:1293,0:23:19
chr15	77986043	.	C	T	.	clustered_events;homologous_mapping_event;t_lod_fstar	ECNT=3;HCNT=23;MAX_ED=78;MIN_ED=17;NLOD=9.44;TLOD=4.14	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:25,2:0.077:0:2:1.00:707,63:8:17	0/0:36,0:0.00:0:0:.:964,0:20:16
chr15	78765790	.	A	G	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=17.02;TLOD=4.35	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:53,2:0.042:1:1:0.500:1603,70:25:28	0/0:77,0:0.00:0:0:.:2311,0:38:39
chr15	81373998	.	A	G	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=7.52;TLOD=5.18	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:18,3:0.118:1:2:0.667:590,97:6:12	0/0:29,0:0.00:0:0:.:954,0:16:13
chr15	82659469	.	TGA	T	.	alt_allele_in_normal;str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.69;RPA=7,6;RU=GA;STR;TLOD=6.21	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:22,3:0.120:3:0:.:686,97:13:9	0/0:23,1:0.042:0:1:.:742,33:12:11
chr15	82663555	.	C	T	.	PASS	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=15.65;TLOD=6.68	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:59,5:0.059:3:2:0.400:2046,166:27:32	0/0:58,0:0.00:0:0:.:2022,0:37:21
chr15	82778940	.	GTA	G	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=11.39;RPA=5,4;RU=TA;STR;TLOD=4.22	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:54,2:0.040:1:1:.:1848,68:28:26	0/0:43,0:0.00:0:0:.:1487,0:18:25
chr15	84857639	.	G	T	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=38.22;TLOD=4.76	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:129,4:0.024:4:0:1.00:4460,131:66:63	0/0:134,0:0.00:0:0:.:4674,0:61:73
chr15	85743732	.	A	C	.	alt_allele_in_normal;t_lod_fstar	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=12.04;TLOD=4.56	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:98,30:0.228:12:18:0.600:2878,165:43:55	0/0:90,21:0.189:8:13:0.619:2502,58:37:53
chr15	88858162	.	T	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=15.60;TLOD=5.28	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:74,4:0.042:3:1:0.750:2490,126:38:36	0/0:54,0:0.00:0:0:.:1789,0:32:22
chr15	89585991	.	T	C	.	t_lod_fstar	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=9.93;TLOD=4.56	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:40,2:0.048:0:2:0.00:1352,71:21:19	0/0:33,0:0.00:0:0:.:1085,0:17:16
chr15	89631593	rs12900805	C	T	.	germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=6.42	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,2:0.667:1:1:0.500:27,63:1:0	0/0:5,0:0.00:0:0:.:142,0:3:2
chr15	90295294	.	A	G	.	t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=13.24;TLOD=4.23	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:38,2:0.051:1:1:0.500:1260,67:22:16	0/0:44,0:0.00:0:0:.:1437,0:25:19
chr15	91004996	.	T	C	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=18.36;TLOD=4.18	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:65,2:0.031:0:2:0.00:2077,71:33:32	0/0:64,0:0.00:0:0:.:2062,0:30:34
chr15	96337308	.	TTTC	T	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=11.87;RPA=6,5;RU=TTC;STR;TLOD=5.51	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:42,2:0.048:1:1:.:1363,66:24:18	0/0:40,0:0.00:0:0:.:1316,0:22:18
chr15	100988671	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=3;MAX_ED=.;MIN_ED=.;NLOD=47.55;TLOD=4.15	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:206,3:0.016:1:2:0.333:6929,94:111:95	0/0:166,0:0.00:0:0:.:5731,0:94:72
chr15	101322765	rs1871975	T	C	.	germline_risk;t_lod_fstar	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=5.62	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:3,2:0.400:1:1:0.500:101,62:2:1	0/0:4,0:0.00:0:0:.:126,0:3:1
chr15	101760460	.	T	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=9.33;TLOD=5.67	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:15,4:0.211:2:2:0.500:486,133:8:7	0/0:49,1:0.021:0:1:0.00:1569,32:23:26
chr15	101764681	.	G	C	.	clustered_events;t_lod_fstar	ECNT=2;HCNT=4;MAX_ED=53;MIN_ED=53;NLOD=6.23;TLOD=4.66	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:29,2:0.074:1:1:0.500:855,76:15:14	0/0:24,0:0.00:0:0:.:707,0:11:13
chr15	101764734	.	TCTC	T	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=2;HCNT=4;MAX_ED=53;MIN_ED=53;NLOD=2.42;TLOD=5.87	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:29,2:0.071:1:1:.:916,65:14:15	0/0:26,1:0.043:1:0:.:852,30:10:16
chr16	781970	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.62;TLOD=4.30	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:14,3:0.133:2:1:0.667:413,91:10:4	0/0:23,0:0.00:0:0:.:684,0:12:11
chr16	1199877	rs11640926	T	G	.	germline_risk	DB;ECNT=2;HCNT=1;MAX_ED=1;MIN_ED=1;NLOD=2.41;TLOD=20.20	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:3,5:0.625:4:1:0.800:0|1:1199877_T_G:92,162:3:0	0/0:8,0:0.00:0:0:.:0|1:1199877_T_G:270,0:4:4
chr16	1199878	rs11640927	T	A	.	germline_risk	DB;ECNT=2;HCNT=1;MAX_ED=1;MIN_ED=1;NLOD=2.41;TLOD=20.20	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:3,5:0.625:4:1:0.800:0|1:1199877_T_G:96,153:3:0	0/0:9,0:0.00:0:0:.:0|1:1199877_T_G:291,0:4:5
chr16	1222870	.	A	G	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=10.23;TLOD=4.28	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:34,2:0.061:2:0:0.00:1069,66:15:19	0/0:34,0:0.00:0:0:.:1096,0:18:16
chr16	1229703	.	A	G	.	alt_allele_in_normal;clustered_events;germline_risk	ECNT=3;HCNT=2;MAX_ED=10;MIN_ED=6;NLOD=0.979;TLOD=59.02	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:75,19:0.218:9:10:0.526:0|1:1229703_A_G:2412,616:27:48	0/0:130,8:0.075:2:6:0.750:0|1:1229703_A_G:4253,278:59:71
chr16	1229709	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=3;HCNT=2;MAX_ED=10;MIN_ED=6;NLOD=4.06;TLOD=46.97	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:71,14:0.177:6:8:0.429:0|1:1229703_A_G:2405,415:25:46	0/0:131,8:0.067:2:6:0.250:0|1:1229703_A_G:4516,242:62:69
chr16	1229713	.	A	G	.	alt_allele_in_normal;clustered_events	ECNT=3;HCNT=2;MAX_ED=10;MIN_ED=6;NLOD=2.83;TLOD=46.97	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:74,12:0.177:5:7:0.583:0|1:1229703_A_G:2251,384:28:46	0/0:133,9:0.067:2:7:0.778:0|1:1229703_A_G:4094,310:64:69
chr16	1241307	.	A	G	.	alt_allele_in_normal;clustered_events	ECNT=4;HCNT=23;MAX_ED=47;MIN_ED=10;NLOD=16.92;TLOD=37.69	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:112,13:0.112:7:6:0.462:0|1:1241307_A_G:3556,402:63:49	0/0:124,5:0.040:4:1:0.200:0|1:1241307_A_G:3958,166:65:59
chr16	1241317	.	G	C	.	alt_allele_in_normal;clustered_events	ECNT=4;HCNT=23;MAX_ED=47;MIN_ED=10;NLOD=20.53;TLOD=45.03	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:98,15:0.132:7:8:0.467:0|1:1241307_A_G:3016,516:57:41	0/0:129,5:0.036:4:1:0.800:0|1:1241307_A_G:4023,175:71:58
chr16	1241336	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=4;HCNT=23;MAX_ED=47;MIN_ED=10;NLOD=11.23;TLOD=35.04	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:78,11:0.124:4:7:0.364:0|1:1241307_A_G:2400,359:42:36	0/0:122,7:0.053:6:1:0.857:0|1:1241307_A_G:3763,223:66:56
chr16	1241354	.	G	C	.	alt_allele_in_normal;clustered_events	ECNT=4;HCNT=23;MAX_ED=47;MIN_ED=10;NLOD=20.82;TLOD=30.51	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:72,10:0.128:3:7:0.300:0|1:1241307_A_G:2445,353:39:33	0/0:120,5:0.034:4:1:0.800:0|1:1241307_A_G:4085,178:63:57
chr16	1762778	.	G	T	.	t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=73.34;TLOD=4.55	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:156,3:0.019:2:1:0.667:5276,97:82:74	0/0:246,0:0.00:0:0:.:8233,0:120:126
chr16	1941512	rs9934331	G	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=7.58	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:0,3:1.00:1:2:0.333:0,59:0:0	0/0:5,0:0.00:0:0:.:167,0:2:3
chr16	1965120	rs1133099	C	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=22.52	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:6,8:0.583:7:1:0.125:210,262:3:3	0/0:7,0:0.00:0:0:.:245,0:6:1
chr16	1966874	.	C	T	.	PASS	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=37.52;TLOD=13.83	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:163,7:0.048:4:3:0.429:5196,227:92:71	0/0:140,0:0.00:0:0:.:4446,0:71:69
chr16	1976634	rs35938501	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.71;TLOD=8.86	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,3:0.429:2:1:0.667:112,95:2:2	0/0:9,0:0.00:0:0:.:242,0:8:1
chr16	1979500	.	G	T	.	t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=18.96;TLOD=4.07	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:48,2:0.043:2:0:1.00:1596,67:22:26	0/0:70,0:0.00:0:0:.:2479,0:42:28
chr16	2060683	.	C	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=57.46;TLOD=4.87	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:207,4:0.016:2:2:0.500:6378,134:122:85	0/0:212,0:0.00:0:0:.:6453,0:108:104
chr16	2209520	.	G	T	.	t_lod_fstar	ECNT=1;HCNT=9;MAX_ED=.;MIN_ED=.;NLOD=59.61;TLOD=4.03	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:190,5:0.017:5:0:1.00:6379,157:84:106	0/0:225,0:0.00:0:0:.:7476,0:114:111
chr16	2210584	.	CCAG	C	.	alt_allele_in_normal;str_contraction;t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=3.82;RPA=6,5;RU=CAG;STR;TLOD=5.45	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:43,2:0.044:1:1:.:1482,69:21:22	0/0:41,2:0.047:1:1:.:1374,71:27:14
chr16	2445422	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=50.00;TLOD=5.01	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:189,4:0.018:2:2:0.500:5702,125:91:98	0/0:188,0:0.00:0:0:.:5494,0:92:96
chr16	3284207	.	TGA	T	.	alt_allele_in_normal;str_contraction	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=15.62;RPA=7,6;RU=GA;STR;TLOD=7.01	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:83,5:0.057:2:3:.:2635,160:43:40	0/0:90,3:0.027:2:1:.:2886,98:49:41
chr16	4752369	rs3747601	C	A	.	clustered_events;germline_risk	DB;ECNT=2;HCNT=2;MAX_ED=16;MIN_ED=16;NLOD=1.20;TLOD=9.97	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,3:0.600:1:2:0.667:66,100:2:0	0/0:4,0:0.00:0:0:.:138,0:2:2
chr16	4752385	rs3747602	G	T	.	clustered_events;germline_risk	DB;ECNT=2;HCNT=2;MAX_ED=16;MIN_ED=16;NLOD=1.20;TLOD=9.97	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,3:0.600:1:2:0.333:74,100:2:0	0/0:4,0:0.00:0:0:.:144,0:2:2
chr16	4860689	.	GAGA	G	.	alt_allele_in_normal;str_contraction	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=60.56;RPA=5,4;RU=AGA;STR;TLOD=6.55	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:268,3:0.013:1:2:.:9382,106:128:140	0/0:273,4:0.012:3:1:.:9700,144:131:142
chr16	4868912	.	CGTCT	C	.	alt_allele_in_normal;str_contraction;t_lod_fstar	ECNT=1;HCNT=8;MAX_ED=.;MIN_ED=.;NLOD=4.68;RPA=6,5;RU=GTCT;STR;TLOD=5.88	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:26,2:0.071:0:2:.:711,58:16:10	0/0:35,2:0.032:1:1:.:965,37:16:19
chr16	8764843	.	GCACA	G	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=8.08;RPA=11,9;RU=CA;STR;TLOD=5.13	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:33,3:0.032:2:1:.:1115,106:16:17	0/0:41,1:0.013:1:0:.:1233,34:17:21
chr16	9764975	.	TCAG	T	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=13.42;RPA=5,4;RU=CAG;STR;TLOD=5.27	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:63,3:0.036:0:3:.:1966,97:36:27	0/0:49,0:0.00:0:0:.:1616,0:22:27
chr16	11275818	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=7.82;TLOD=4.11	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:30,2:0.063:2:0:1.00:1081,64:20:10	0/0:26,0:0.00:0:0:.:916,0:12:14
chr16	18850557	.	TCATA	T	.	germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=7.35	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,2:0.333:1:1:.:125,70:2:2	0/0:4,0:0.00:0:0:.:126,0:3:1
chr16	20860146	.	GAGGATTGT	G	.	clustered_events;homologous_mapping_event	ECNT=4;HCNT=4;MAX_ED=17;MIN_ED=10;NLOD=61.53;TLOD=6.57	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:233,3:0.013:2:1:.:0|1:20860146_GAGGATTGT_G:7844,99:127:106	0/0:213,0:0.00:0:0:.:0|1:20860146_GAGGATTGT_G:7307,0:129:84
chr16	20860156	.	CTGGG	C	.	clustered_events;homologous_mapping_event	ECNT=4;HCNT=4;MAX_ED=17;MIN_ED=10;NLOD=59.90;TLOD=6.63	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:225,3:0.014:2:1:.:0|1:20860146_GAGGATTGT_G:7735,93:117:108	0/0:206,0:0.00:0:0:.:0|1:20860146_GAGGATTGT_G:7180,0:125:81
chr16	20860161	.	T	C	.	clustered_events;homologous_mapping_event	ECNT=4;HCNT=4;MAX_ED=17;MIN_ED=10;NLOD=54.79;TLOD=7.85	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:207,3:0.020:2:1:0.667:0|1:20860146_GAGGATTGT_G:6356,94:109:98	0/0:183,0:0.00:0:0:.:0|1:20860146_GAGGATTGT_G:5623,0:108:75
chr16	20860163	.	AAGACTAGT	A	.	clustered_events;homologous_mapping_event	ECNT=4;HCNT=4;MAX_ED=17;MIN_ED=10;NLOD=61.00;TLOD=7.73	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:228,3:0.018:2:1:.:0|1:20860146_GAGGATTGT_G:7599,100:114:114	0/0:208,0:0.00:0:0:.:0|1:20860146_GAGGATTGT_G:6860,0:124:84
chr16	21891595	.	G	A	.	germline_risk;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.602;TLOD=5.95	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:0,2:1.00:1:1:0.500:0,68:0:0	0/0:10,0:0.00:0:0:.:313,0:7:3
chr16	23474882	.	T	G	.	alt_allele_in_normal;t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=9.97;TLOD=5.62	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:69,24:0.247:10:14:0.417:1976,184:37:32	0/0:60,8:0.123:3:5:0.375:1708,47:35:25
chr16	23836352	.	AGC	A	.	str_contraction	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=27.99;RPA=6,5;RU=GC;STR;TLOD=7.56	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:135,4:0.036:1:3:.:4321,127:60:75	0/0:115,1:0.010:0:1:.:3736,34:53:62
chr16	24910415	.	CCAG	C	.	alt_allele_in_normal;str_contraction;t_lod_fstar	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=7.80;RPA=5,4;RU=CAG;STR;TLOD=4.86	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:91,3:0.023:1:2:.:3115,106:44:47	0/0:61,2:0.036:1:1:.:2091,71:26:35
chr16	28595713	.	GTGA	G	.	clustered_events;multi_event_alt_allele_in_normal	ECNT=2;HCNT=2;MAX_ED=7;MIN_ED=7;NLOD=22.93;TLOD=7.65	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:101,4:0.030:4:0:.:0|1:28595713_GTGA_G:3386,133:57:44	0/0:85,1:0.011:1:0:.:0|1:28595713_GTGA_G:2878,33:48:37
chr16	28595720	.	T	C	.	clustered_events	ECNT=2;HCNT=2;MAX_ED=7;MIN_ED=7;NLOD=25.87;TLOD=10.78	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:96,3:0.042:3:0:1.00:0|1:28595713_GTGA_G:3029,81:54:42	0/0:85,0:0.00:0:0:.:0|1:28595713_GTGA_G:2711,0:51:34
chr16	28608674	.	A	G	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=2;HCNT=2;MAX_ED=30;MIN_ED=30;NLOD=25.24;TLOD=5.51	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:134,5:0.038:3:2:0.400:4186,142:68:66	0/0:117,3:0.026:3:0:0.00:3682,82:72:45
chr16	28608704	.	T	C	.	alt_allele_in_normal;clustered_events;germline_risk	ECNT=2;HCNT=2;MAX_ED=30;MIN_ED=30;NLOD=1.91;TLOD=17.92	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:138,11:0.080:7:4:0.636:4550,362:72:66	0/0:134,10:0.075:3:7:0.300:4453,333:82:52
chr16	28723438	.	G	A	.	alt_allele_in_normal	ECNT=1;HCNT=9;MAX_ED=.;MIN_ED=.;NLOD=26.15;TLOD=24.62	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:511,26:0.052:10:16:0.385:17753,812:242:269	0/0:494,38:0.074:18:20:0.474:17125,1164:245:249
chr16	28867458	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=16;MAX_ED=.;MIN_ED=.;NLOD=40.33;TLOD=4.26	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:147,3:0.020:2:1:0.667:4787,92:60:87	0/0:135,0:0.00:0:0:.:4561,0:74:61
chr16	29987176	.	CCTG	C	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=22.69;RPA=5,4;RU=CTG;STR;TLOD=4.73	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:105,2:0.019:0:2:.:3560,50:53:52	0/0:91,1:0.011:0:1:.:3114,35:50:41
chr16	30519927	.	GGCT	G	.	alt_allele_in_normal;str_contraction	ECNT=1;HCNT=6;MAX_ED=.;MIN_ED=.;NLOD=17.89;RPA=6,5;RU=GCT;STR;TLOD=9.92	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:188,4:0.025:1:3:.:6309,137:123:65	0/0:135,4:0.033:3:1:.:4568,139:82:53
chr16	30604777	.	AGAG	A	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=10.78;RPA=4,3;RU=GAG;STR;TLOD=5.37	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:51,3:0.041:0:3:.:1610,99:27:24	0/0:37,0:0.00:0:0:.:1194,0:16:21
chr16	30971487	.	ATCC	A	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=19.09;RPA=5,4;RU=TCC;STR;TLOD=4.95	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:79,2:0.025:2:0:.:2538,63:35:44	0/0:78,1:0.013:1:0:.:2474,32:41:37
chr16	32812366	.	T	G	.	alt_allele_in_normal;t_lod_fstar	ECNT=2;HCNT=6;MAX_ED=1;MIN_ED=1;NLOD=5.75;TLOD=5.67	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:33,2:0.057:2:0:1.00:0|1:32812366_T_G:1095,71:18:15	0/0:69,3:0.043:1:2:0.333:0|1:32812366_T_G:2281,108:35:34
chr16	32812367	.	G	T	.	alt_allele_in_normal;t_lod_fstar	ECNT=2;HCNT=6;MAX_ED=1;MIN_ED=1;NLOD=5.75;TLOD=5.67	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:33,2:0.057:2:0:1.00:0|1:32812366_T_G:1167,63:18:15	0/0:68,3:0.043:1:2:0.333:0|1:32812366_T_G:2423,97:34:34
chr16	34159301	.	T	G	.	clustered_events;t_lod_fstar	ECNT=2;HCNT=4;MAX_ED=4;MIN_ED=4;NLOD=3.91;TLOD=5.50	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:12,1:0.154:1:0:1.00:0|1:34159301_T_G:368,37:9:3	0/0:13,0:0.00:0:0:.:0|1:34159301_T_G:408,0:4:9
chr16	34159305	.	G	A	.	clustered_events;t_lod_fstar	ECNT=2;HCNT=4;MAX_ED=4;MIN_ED=4;NLOD=3.91;TLOD=5.50	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:10,3:0.154:3:0:1.00:0|1:34159301_T_G:318,95:7:3	0/0:13,0:0.00:0:0:.:0|1:34159301_T_G:437,0:4:9
chr16	34592736	.	G	C	.	germline_risk;t_lod_fstar	ECNT=2;HCNT=1;MAX_ED=2;MIN_ED=2;NLOD=1.51;TLOD=4.50	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:0,2:1.00:0:2:0.00:0|1:34592736_G_C:0,72:0:0	0/0:8,0:0.00:0:0:.:0|1:34592736_G_C:289,0:3:5
chr16	34592738	.	T	A	.	germline_risk;t_lod_fstar	ECNT=2;HCNT=1;MAX_ED=2;MIN_ED=2;NLOD=1.51;TLOD=4.50	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:0,2:1.00:0:2:0.00:0|1:34592736_G_C:0,68:0:0	0/0:8,0:0.00:0:0:.:0|1:34592736_G_C:275,0:3:5
chr16	46906877	.	C	T	.	PASS	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=24.80;TLOD=25.85	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:108,11:0.099:3:8:0.727:3218,363:55:53	0/0:97,1:0.011:0:1:1.00:2930,33:55:42
chr16	49523693	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=17.11;TLOD=4.89	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:69,3:0.044:1:2:0.333:2227,88:32:37	0/0:62,0:0.00:0:0:.:1968,0:29:33
chr16	50334766	.	CCT	C	.	alt_allele_in_normal;str_contraction	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=10.56;RPA=7,6;RU=CT;STR;TLOD=24.71	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:239,16:0.063:3:13:.:8121,547:147:92	0/0:245,19:0.075:11:8:.:8488,653:137:108
chr16	50782525	.	GGT	G	.	alt_allele_in_normal;str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.83;RPA=8,7;RU=GT;STR;TLOD=4.16	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:28,3:0.103:1:2:.:882,89:16:12	0/0:30,1:0.033:1:0:.:1031,31:17:13
chr16	51137582	.	CAG	C	.	alt_allele_in_normal;str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.50;RPA=7,6;RU=AG;STR;TLOD=5.82	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:18,3:0.143:1:2:.:633,106:9:9	0/0:19,1:0.053:0:1:.:619,27:10:9
chr16	52655979	.	T	C	.	alt_allele_in_normal;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=21.27;TLOD=4.94	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:133,4:0.031:2:2:0.500:4280,136:50:83	0/0:113,6:0.054:3:3:0.500:3631,195:59:54
chr16	52656086	.	G	C	.	alt_allele_in_normal;clustered_events	ECNT=2;HCNT=2;MAX_ED=28;MIN_ED=28;NLOD=28.86;TLOD=16.88	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:140,10:0.066:3:7:0.300:4828,345:68:72	0/0:129,2:0.016:1:1:0.500:4430,72:61:68
chr16	52656114	.	T	TCCTGG	.	clustered_events	ECNT=2;HCNT=2;MAX_ED=28;MIN_ED=28;NLOD=29.88;TLOD=8.79	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:123,4:0.035:1:3:.:4013,124:59:64	0/0:107,0:0.00:0:0:.:3506,0:54:53
chr16	55328761	.	AGAG	A	.	str_contraction	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=13.49;RPA=6,5;RU=GAG;STR;TLOD=7.94	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:80,3:0.038:1:2:.:2596,96:47:33	0/0:62,1:0.017:0:1:.:2003,35:31:31
chr16	55566927	.	T	C	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=21.37;TLOD=4.34	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:52,2:0.037:2:0:1.00:1648,71:32:20	0/0:77,0:0.00:0:0:.:2480,0:42:35
chr16	56355125	.	TACACACACAC	T	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.95;RPA=15,10;RU=AC;STR;TLOD=5.31	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:16,2:0.071:1:1:.:124,63:1:3	0/0:24,0:0.00:0:0:.:249,0:3:5
chr16	56839231	.	G	T	.	germline_risk;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=4.94	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:5,2:0.286:2:0:1.00:162,58:2:3	0/0:5,0:0.00:0:0:.:166,0:2:3
chr16	56899823	rs2304481	C	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=6.42	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,2:0.667:1:1:0.500:28,63:1:0	0/0:4,0:0.00:0:0:.:116,0:1:3
chr16	57025993	.	GCTGC	G	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=29.36;RPA=5,4;RU=CTGC;STR;TLOD=4.68	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:107,2:0.019:1:1:.:3656,70:52:55	0/0:115,1:8.850e-03:0:1:.:3900,35:55:60
chr16	57475785	.	CCT	C	.	alt_allele_in_normal;germline_risk;str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.45;RPA=6,5;RU=CT;STR;TLOD=4.50	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:28,3:0.103:1:2:.:879,100:14:14	0/0:16,1:0.059:1:0:.:533,34:9:7
chr16	57655318	.	G	GGTGT	.	triallelic_site	ECNT=1;HCNT=16;MAX_ED=.;MIN_ED=.;NLOD=16.27;RPA=8,10;RU=GT;STR;TLOD=6.80	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:50,5:0.028:4:0:.:1347,138:20:22	0/0:63,1:9.709e-03:0:0:.:1929,0:30:27
chr16	65868575	rs12445094	T	C	.	germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=10.17	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,3:0.600:2:1:0.667:66,102:1:1	0/0:4,0:0.00:0:0:.:132,0:1:3
chr16	66912991	.	CGTGTGT	C	.	alt_allele_in_normal	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=9.65;RPA=16,13;RU=GT;STR;TLOD=9.14	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:43,9:0.063:2:2:.:660,140:10:10	0/0:69,8:0.034:0:1:.:1387,36:24:17
chr16	66916476	.	A	G	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.72;TLOD=4.53	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:31,2:0.065:1:1:0.500:1015,68:13:18	0/0:19,0:0.00:0:0:.:627,0:10:9
chr16	66972241	.	TATC	T	.	alt_allele_in_normal;str_contraction	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=35.68;RPA=7,6;RU=ATC;STR;TLOD=6.32	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:146,3:0.020:1:2:.:4830,95:78:68	0/0:145,2:0.014:1:1:.:4836,67:70:75
chr16	66972510	.	GGACA	G	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=30.47;RPA=4,3;RU=GACA;STR;TLOD=4.51	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:139,2:0.015:1:1:.:4658,70:76:63	0/0:125,1:8.547e-03:1:0:.:4237,34:53:72
chr16	67195890	.	ACAG	A	.	alt_allele_in_normal;clustered_events;str_contraction	ECNT=2;HCNT=2;MAX_ED=139;MIN_ED=139;NLOD=4.42;RPA=13,12;RU=CAG;STR;TLOD=7.04	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:55,16:0.227:8:8:.:1680,507:25:30	0/0:47,7:0.130:3:4:.:1503,219:25:22
chr16	67196029	.	CAG	C	.	alt_allele_in_normal;clustered_events;str_contraction;t_lod_fstar	ECNT=2;HCNT=2;MAX_ED=139;MIN_ED=139;NLOD=18.97;RPA=6,5;RU=AG;STR;TLOD=4.69	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:148,3:0.023:3:0:.:5248,97:71:77	0/0:104,3:0.030:1:2:.:3719,101:53:51
chr16	67266113	.	TGAG	T	.	str_contraction	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=10.80;RPA=6,5;RU=GAG;STR;TLOD=8.43	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:60,3:0.054:1:2:.:1966,99:40:20	0/0:55,1:0.020:1:0:.:1820,32:24:31
chr16	67611476	.	C	T	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=27.09;TLOD=4.84	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:120,3:0.027:2:1:0.333:4162,94:52:68	0/0:98,0:0.00:0:0:.:3401,0:49:49
chr16	67729375	.	CGAG	C	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=15.30;RPA=5,4;RU=GAG;STR;TLOD=5.29	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:53,2:0.037:1:1:.:1579,59:25:28	0/0:51,0:0.00:0:0:.:1560,0:26:25
chr16	67842875	.	ACAG	A	.	clustered_events;str_contraction;t_lod_fstar	ECNT=2;HCNT=10;MAX_ED=45;MIN_ED=45;NLOD=25.83;RPA=5,4;RU=CAG;STR;TLOD=4.77	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:95,2:0.021:1:1:.:3080,67:46:49	0/0:86,0:0.00:0:0:.:2752,0:33:53
chr16	67842920	.	A	G	.	clustered_events;multi_event_alt_allele_in_normal	ECNT=2;HCNT=2;MAX_ED=45;MIN_ED=45;NLOD=6.23;TLOD=10.46	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:173,32:0.046:0:0:.:103,0:2:1	0/0:142,27:0.044:0:0:.:165,0:2:3
chr16	67879882	.	TAGC	T	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=8;MAX_ED=.;MIN_ED=.;NLOD=17.07;RPA=6,5;RU=AGC;STR;TLOD=5.03	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:70,2:0.028:2:0:.:2174,61:38:32	0/0:72,1:0.014:1:0:.:2206,32:40:32
chr16	67945669	.	C	T	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.62;TLOD=4.30	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:24,2:0.077:1:1:0.500:722,64:11:13	0/0:22,0:0.00:0:0:.:680,0:9:13
chr16	69749074	.	TTCC	T	.	alt_allele_in_normal;str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=14.38;RPA=5,4;RU=TCC;STR;TLOD=4.73	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:111,2:0.020:2:0:.:3688,70:62:49	0/0:87,2:0.026:1:1:.:2911,69:40:47
chr16	70992385	.	A	G	.	germline_risk;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=5.52	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,2:0.667:1:1:0.500:32,67:1:0	0/0:7,0:0.00:0:0:.:214,0:4:3
chr16	71115613	.	GCA	G	.	alt_allele_in_normal;str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=10.11;RPA=7,6;RU=CA;STR;TLOD=4.51	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:74,3:0.020:1:2:.:2409,106:40:29	0/0:79,4:0.025:2:2:.:2742,128:39:37
chr16	72787694	.	AGCC	A	.	str_contraction	ECNT=1;HCNT=12;MAX_ED=.;MIN_ED=.;NLOD=9.64;RPA=8,7;RU=GCC;STR;TLOD=8.38	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:28,3:0.129:0:3:.:757,88:18:10	0/0:34,0:0.00:0:0:.:829,0:17:17
chr16	72788664	.	TTGC	T	.	alt_allele_in_normal;str_contraction	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=26.27;RPA=7,6;RU=TGC;STR;TLOD=19.68	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:151,9:0.051:8:1:.:4821,289:104:47	0/0:176,7:0.039:2:5:.:5691,229:105:71
chr16	72797458	.	CTTG	C	.	alt_allele_in_normal;germline_risk;str_contraction	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.34;RPA=10,9;RU=TTG;STR;TLOD=9.05	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:29,4:0.121:3:1:.:1003,124:19:10	0/0:25,2:0.074:0:2:.:841,70:16:9
chr16	74418152	.	A	G	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=2;HCNT=6;MAX_ED=64;MIN_ED=64;NLOD=17.90;TLOD=4.08	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:161,4:0.029:2:2:0.500:5142,137:82:79	0/0:135,8:0.061:2:6:0.750:4346,275:64:71
chr16	74418216	.	A	G	.	alt_allele_in_normal;clustered_events	ECNT=2;HCNT=6;MAX_ED=64;MIN_ED=64;NLOD=5.62;TLOD=7.06	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:63,5:0.074:3:2:0.400:2042,163:36:27	0/0:140,17:0.113:9:8:0.471:4544,513:78:62
chr16	74485950	.	A	G	.	t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=13.54;TLOD=4.41	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:53,2:0.040:2:0:0.00:1756,71:29:24	0/0:47,0:0.00:0:0:.:1565,0:25:22
chr16	75447722	.	A	C	.	PASS	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=18.31;TLOD=12.80	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:48,5:0.096:4:1:0.200:1586,181:23:25	0/0:62,0:0.00:0:0:.:2072,0:31:31
chr16	84013248	rs13335951	A	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=13.55	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,4:0.667:1:3:0.750:67,133:0:2	0/0:6,0:0.00:0:0:.:186,0:4:2
chr16	84237675	rs4782598	A	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=7.02	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,2:0.667:0:2:1.00:33,69:1:0	0/0:4,0:0.00:0:0:.:127,0:2:2
chr16	84453491	.	T	C	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=14.14;TLOD=4.04	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:52,2:0.037:1:1:0.500:1606,68:30:22	0/0:47,0:0.00:0:0:.:1455,0:27:20
chr16	85816395	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.17;TLOD=4.33	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:21,2:0.100:1:1:0.500:675,62:14:7	0/0:14,0:0.00:0:0:.:420,0:4:10
chr16	87936648	rs4843740	T	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=10.07	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,3:0.600:3:0:1.00:60,101:1:1	0/0:4,0:0.00:0:0:.:129,0:2:2
chr16	90095122	.	A	G	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.62;TLOD=4.53	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:25,2:0.080:1:1:0.500:775,70:15:10	0/0:27,0:0.00:0:0:.:815,0:14:13
chr16	90095902	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=3;HCNT=21;MAX_ED=30;MIN_ED=28;NLOD=15.71;TLOD=25.57	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:192,17:0.081:8:9:0.471:6029,541:85:107	0/0:167,12:0.062:4:8:0.333:5205,381:70:97
chr16	90095930	.	T	C	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=3;HCNT=27;MAX_ED=30;MIN_ED=28;NLOD=41.55;TLOD=5.89	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:181,3:0.017:0:3:0.00:0|1:90095930_T_C:5828,102:81:100	0/0:159,2:0.013:1:1:0.500:0|1:90095930_T_C:5147,69:67:92
chr16	90095932	.	C	T	.	alt_allele_in_normal;clustered_events;t_lod_fstar	DB;ECNT=3;HCNT=27;MAX_ED=30;MIN_ED=28;NLOD=41.25;TLOD=5.87	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:177,2:0.017:0:2:1.00:0|1:90095930_T_C:5378,64:80:97	0/0:158,2:0.013:1:1:0.500:0|1:90095930_T_C:4840,64:65:93
chr17	532981	rs2304947	G	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=26.27	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,7:0.778:4:3:0.571:71,250:2:0	0/0:4,0:0.00:0:0:.:130,0:2:2
chr17	1552954	.	T	TCA	.	alt_allele_in_normal;t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=26.56;RPA=6,7;RU=CA;STR;TLOD=5.07	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:150,4:0.029:4:0:.:4766,136:76:74	0/0:116,2:0.018:1:1:.:3730,68:54:62
chr17	2058487	.	G	T	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.72;TLOD=4.76	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:12,2:0.143:1:1:0.500:384,63:6:6	0/0:19,0:0.00:0:0:.:622,0:11:8
chr17	2300674	.	C	T	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=10.53;TLOD=4.23	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:27,2:0.071:0:2:1.00:782,64:15:12	0/0:36,0:0.00:0:0:.:1062,0:23:13
chr17	3542560	.	C	A	.	t_lod_fstar	ECNT=1;HCNT=3;MAX_ED=.;MIN_ED=.;NLOD=16.52;TLOD=4.02	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:50,2:0.045:0:2:1.00:1715,66:27:23	0/0:60,0:0.00:0:0:.:2061,0:28:32
chr17	4639414	.	T	C	.	alt_allele_in_normal;clustered_events	ECNT=2;HCNT=1;MAX_ED=16;MIN_ED=16;NLOD=19.05;TLOD=13.35	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:91,4:0.052:2:2:0.500:0|1:4639414_T_C:2931,129:48:43	0/0:103,2:0.038:2:0:1.00:0|1:4639414_T_C:3334,68:49:54
chr17	4639430	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=2;HCNT=1;MAX_ED=16;MIN_ED=16;NLOD=7.61;TLOD=15.81	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:118,8:0.060:5:3:0.375:0|1:4639414_T_C:3756,262:56:62	0/0:108,7:0.068:5:2:0.286:0|1:4639414_T_C:3417,228:48:60
chr17	4639517	.	G	A	.	alt_allele_in_normal	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=17.39;TLOD=10.55	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:116,5:0.045:2:3:0.400:3873,151:60:56	0/0:91,4:0.035:2:2:0.500:3099,127:50:41
chr17	4933694	.	A	ACACTTCACATGGAATCCAT	.	t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=49.39;RPA=1,2;RU=CACTTCACATGGAATCCAT;STR;TLOD=4.15	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:218,1:0.011:0:1:.:6793,33:100:118	0/0:188,0:0.00:0:0:.:5898,0:76:112
chr17	4959499	.	C	T	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=25.54;TLOD=5.22	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:96,5:0.033:5:0:0.00:3142,167:54:42	0/0:92,0:0.00:0:0:.:3086,0:49:43
chr17	5135261	.	G	C	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=4;HCNT=8;MAX_ED=49;MIN_ED=3;NLOD=19.02;TLOD=4.63	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:121,3:0.018:2:1:0.667:0|1:5135261_G_C:4081,101:52:69	0/0:129,5:0.033:3:2:0.600:0|1:5135261_G_C:4459,173:67:62
chr17	5135264	.	C	A	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=4;HCNT=8;MAX_ED=49;MIN_ED=3;NLOD=17.52;TLOD=4.64	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:115,3:0.018:2:1:0.333:0|1:5135261_G_C:3958,99:50:65	0/0:126,5:0.034:3:2:0.400:0|1:5135261_G_C:4382,164:67:59
chr17	5135309	.	C	T	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=4;HCNT=8;MAX_ED=49;MIN_ED=3;NLOD=15.98;TLOD=4.99	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:74,3:0.026:1:2:0.667:0|1:5135309_C_T:2633,101:41:33	0/0:88,2:0.024:2:0:0.00:0|1:5135309_C_T:3134,66:45:43
chr17	5135310	.	A	G	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=4;HCNT=8;MAX_ED=49;MIN_ED=3;NLOD=15.98;TLOD=4.99	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:75,3:0.026:1:2:0.667:0|1:5135309_C_T:2466,100:41:34	0/0:85,2:0.024:2:0:0.00:0|1:5135309_C_T:2822,67:43:42
chr17	5489389	.	A	G	.	t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=66.52;TLOD=4.35	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:256,3:0.014:1:2:0.667:8402,98:136:120	0/0:247,0:0.00:0:0:.:8233,0:130:117
chr17	5539586	.	C	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=8.13;TLOD=4.24	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:33,2:0.065:0:2:1.00:1106,65:14:19	0/0:31,0:0.00:0:0:.:1049,0:15:16
chr17	6080751	.	CCTG	C	.	str_contraction	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=10.78;RPA=4,3;RU=CTG;STR;TLOD=8.84	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:38,3:0.073:3:0:.:1261,103:22:16	0/0:38,0:0.00:0:0:.:1305,0:18:20
chr17	6464854	.	C	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=10.23;TLOD=4.01	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:44,2:0.044:0:2:1.00:1500,66:25:19	0/0:34,0:0.00:0:0:.:1151,0:21:13
chr17	6608749	rs9912456	C	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=6.41	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,2:0.667:0:2:1.00:37,63:0:1	0/0:5,0:0.00:0:0:.:183,0:2:3
chr17	7236144	.	CTCT	C	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=29.35;RPA=4,3;RU=TCT;STR;TLOD=4.65	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:111,2:0.018:1:1:.:3825,72:64:47	0/0:100,0:0.00:0:0:.:3524,0:56:44
chr17	7343768	.	T	G	.	alt_allele_in_normal;clustered_events	ECNT=3;HCNT=2;MAX_ED=5;MIN_ED=2;NLOD=7.77;TLOD=13.65	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:224,35:0.068:15:20:0.429:0|1:7343768_T_G:7154,467:127:97	0/0:224,25:0.103:16:9:0.640:0|1:7343768_T_G:7192,365:122:102
chr17	7343770	.	A	G	.	alt_allele_in_normal;clustered_events	ECNT=3;HCNT=2;MAX_ED=5;MIN_ED=2;NLOD=9.30;TLOD=18.48	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:217,30:0.078:11:19:0.633:0|1:7343768_T_G:7185,216:120:97	0/0:222,19:0.101:11:8:0.421:0|1:7343768_T_G:7305,60:119:103
chr17	7343773	.	GCA	G	.	alt_allele_in_normal;clustered_events	ECNT=3;HCNT=2;MAX_ED=5;MIN_ED=2;NLOD=24.39;TLOD=12.80	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:210,21:0.059:7:14:.:0|1:7343768_T_G:7102,293:114:96	0/0:222,16:0.076:9:7:.:0|1:7343768_T_G:7445,145:120:102
chr17	7415232	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.62;TLOD=4.17	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:22,2:0.083:1:1:0.500:737,62:11:11	0/0:22,0:0.00:0:0:.:744,0:12:10
chr17	7636684	.	CCT	C	.	germline_risk;str_contraction;t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.20;RPA=8,7;RU=CT;STR;TLOD=4.63	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:5,2:0.333:1:1:.:173,60:1:4	0/0:4,0:0.00:0:0:.:133,0:1:3
chr17	7933253	.	A	C	.	alt_allele_in_normal	ECNT=1;HCNT=10;MAX_ED=.;MIN_ED=.;NLOD=12.64;TLOD=6.97	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:72,9:0.113:8:1:0.111:1790,60:35:37	0/0:86,7:0.078:1:6:0.857:2303,52:35:51
chr17	8087237	.	GAC	G	.	alt_allele_in_normal;str_contraction	ECNT=1;HCNT=3;MAX_ED=.;MIN_ED=.;NLOD=4.09;RPA=10,9;RU=AC;STR;TLOD=8.09	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:19,8:0.296:6:2:.:654,274:5:14	0/0:27,2:0.069:1:1:.:897,69:11:16
chr17	8160737	.	GAC	G	.	alt_allele_in_normal;str_contraction	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=6.41;RPA=7,6;RU=AC;STR;TLOD=8.66	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:32,4:0.114:2:2:.:1067,136:23:9	0/0:32,1:0.030:1:0:.:1102,35:18:14
chr17	8262773	rs4792700	A	G	.	clustered_events;germline_risk	DB;ECNT=2;HCNT=3;MAX_ED=6;MIN_ED=6;NLOD=0.903;TLOD=43.36	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:8,10:0.579:5:5:0.500:0|1:8262773_A_G:255,334:5:3	0/0:3,0:0.00:0:0:.:0|1:8262773_A_G:96,0:3:0
chr17	8262779	rs4792701	G	C	.	clustered_events;germline_risk	DB;ECNT=2;HCNT=3;MAX_ED=6;MIN_ED=6;NLOD=1.20;TLOD=43.36	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:8,11:0.579:6:5:0.545:0|1:8262773_A_G:287,376:5:3	0/0:4,0:0.00:0:0:.:0|1:8262773_A_G:128,0:4:0
chr17	8466922	.	T	C	.	t_lod_fstar	ECNT=1;HCNT=3;MAX_ED=.;MIN_ED=.;NLOD=30.70;TLOD=5.22	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:100,3:0.030:2:1:0.667:3279,97:62:38	0/0:107,0:0.00:0:0:.:3531,0:46:61
chr17	8735315	.	ATG	A	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=13.18;RPA=6,5;RU=TG;STR;TLOD=6.08	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:47,3:0.060:2:1:.:1423,94:24:23	0/0:51,1:0.019:0:1:.:1588,20:29:22
chr17	10642341	.	A	G	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=10.53;TLOD=4.28	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:35,2:0.054:0:2:1.00:1098,67:18:17	0/0:35,0:0.00:0:0:.:1083,0:19:16
chr17	10642852	.	C	T	.	t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=55.93;TLOD=4.36	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:213,4:0.016:4:0:0.00:7191,127:113:100	0/0:211,0:0.00:0:0:.:7164,0:94:117
chr17	12993976	rs9915058	A	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.01;TLOD=13.05	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:3,4:0.571:2:2:0.500:101,133:1:2	0/0:10,0:0.00:0:0:.:330,0:3:7
chr17	12995632	.	T	C	.	germline_risk;t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=4.28	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:8,2:0.200:2:0:1.00:246,55:5:3	0/0:7,0:0.00:0:0:.:216,0:4:3
chr17	15589235	.	T	C	.	alt_allele_in_normal	ECNT=1;HCNT=8;MAX_ED=.;MIN_ED=.;NLOD=32.60;TLOD=15.75	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:274,12:0.050:3:9:0.250:8895,348:130:144	0/0:245,37:0.138:17:20:0.459:8002,1101:113:132
chr17	15605207	.	T	C	.	alt_allele_in_normal;germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.874;TLOD=8.01	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:25,4:0.143:3:1:0.750:787,127:18:7	0/0:30,2:0.067:2:0:1.00:947,72:14:16
chr17	16432175	.	GTGC	G	.	alt_allele_in_normal;str_contraction	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=15.85;RPA=5,4;RU=TGC;STR;TLOD=10.00	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:97,4:0.043:3:1:.:3333,137:57:40	0/0:91,2:0.024:0:2:.:3117,69:45:46
chr17	17136247	.	CCAGCAG	C	.	alt_allele_in_normal	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.26;RPA=11,9;RU=CAG;STR;TLOD=15.51	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:29,6:0.103:4:2:.:777,206:9:14	0/0:26,1:0.044:0:1:.:731,31:15:6
chr17	17491390	.	ACAG	A	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=35.67;RPA=5,4;RU=CAG;STR;TLOD=4.26	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:190,2:0.011:1:1:.:6229,60:87:103	0/0:147,1:7.463e-03:0:1:.:4834,35:69:78
chr17	17819267	.	ATG	A	.	alt_allele_in_normal;str_contraction	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=11.52;RPA=7,6;RU=TG;STR;TLOD=15.22	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:92,8:0.082:4:4:.:2868,257:58:34	0/0:74,3:0.043:3:0:.:2282,97:40:34
chr17	18294575	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=7.22;TLOD=5.14	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:7,2:0.222:2:0:1.00:220,63:4:3	0/0:24,0:0.00:0:0:.:747,0:15:9
chr17	18305089	.	TCAG	T	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=9.62;RPA=5,4;RU=CAG;STR;TLOD=5.58	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:39,2:0.051:0:2:.:1202,64:22:17	0/0:48,1:0.021:0:1:.:1471,29:25:23
chr17	18450295	.	TGCGGCATCGGGG	T	.	germline_risk;str_contraction	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.584;RPA=2,1;RU=GCGGCATCGGGG;STR;TLOD=6.83	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:8,2:0.200:1:1:.:228,68:6:2	0/0:4,0:0.00:0:0:.:90,0:2:2
chr17	18765045	.	G	A	.	germline_risk;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=4.79	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:9,2:0.182:1:1:0.500:308,61:3:6	0/0:6,0:0.00:0:0:.:207,0:0:6
chr17	19673039	.	TCAA	T	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=23.75;RPA=6,5;RU=CAA;STR;TLOD=4.86	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:68,2:0.029:2:0:.:2248,66:26:42	0/0:79,0:0.00:0:0:.:2589,0:43:36
chr17	19748169	rs2072327	T	G	.	germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=18.81	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,5:0.833:3:2:0.600:32,176:0:1	0/0:4,0:0.00:0:0:.:129,0:2:2
chr17	20844052	.	T	A	.	germline_risk;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=5.75	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:0,2:1.00:0:2:0.00:0,62:0:0	0/0:5,0:0.00:0:0:.:164,0:3:2
chr17	21703524	.	G	A	.	alt_allele_in_normal;germline_risk;t_lod_fstar	ECNT=1;HCNT=8;MAX_ED=.;MIN_ED=.;NLOD=2.14;TLOD=6.27	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:12,3:0.200:2:1:0.667:417,102:8:4	0/0:42,3:0.070:2:1:0.667:1433,97:15:27
chr17	26962506	.	C	A	.	clustered_events;germline_risk;homologous_mapping_event;t_lod_fstar	ECNT=3;HCNT=2;MAX_ED=5;MIN_ED=2;NLOD=1.51;TLOD=4.50	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:0,1:1.00:1:0:0.00:0|1:26962506_C_A:0,30:0:0	0/0:5,0:0.00:0:0:.:0|1:26962506_C_A:124,0:2:3
chr17	26962508	.	T	C	.	clustered_events;germline_risk;homologous_mapping_event;t_lod_fstar	ECNT=3;HCNT=2;MAX_ED=5;MIN_ED=2;NLOD=1.51;TLOD=4.50	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:0,1:1.00:1:0:1.00:0|1:26962506_C_A:0,28:0:0	0/0:4,0:0.00:0:0:.:0|1:26962506_C_A:120,0:1:3
chr17	26962511	.	C	CT	.	clustered_events;germline_risk;homologous_mapping_event;t_lod_fstar	ECNT=3;HCNT=2;MAX_ED=5;MIN_ED=2;NLOD=1.20;RPA=4,5;RU=T;STR;TLOD=4.50	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:0,1:1.00:1:0:.:0|1:26962506_C_A:0,34:0:0	0/0:4,0:0.00:0:0:.:0|1:26962506_C_A:126,0:1:3
chr17	26981981	.	G	A	.	alt_allele_in_normal	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=12.77;TLOD=6.52	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:76,5:0.066:4:1:0.800:2400,150:45:31	0/0:92,4:0.044:2:2:0.500:2939,124:32:60
chr17	27766766	rs4796034	G	A	.	germline_risk;t_lod_fstar	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=5.59	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:3,2:0.400:1:1:0.500:103,61:1:2	0/0:4,0:0.00:0:0:.:134,0:4:0
chr17	28537488	.	C	T	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.72;TLOD=4.40	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:28,2:0.069:2:0:0.00:956,66:16:12	0/0:19,0:0.00:0:0:.:629,0:11:8
chr17	28584629	.	TAC	T	.	alt_allele_in_normal;str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=11.96;RPA=8,7;RU=AC;STR;TLOD=4.03	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:74,3:0.041:0:3:.:2333,99:34:40	0/0:59,2:0.033:1:1:.:1861,37:26:33
chr17	28586528	.	TTTTG	T	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=7.11;RPA=4,3;RU=TTTG;STR;TLOD=5.46	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:46,2:0.044:0:2:.:1570,69:21:25	0/0:38,1:0.026:1:0:.:1297,35:16:22
chr17	28674284	.	TGAG	T	.	str_contraction	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=9.29;RPA=6,5;RU=GAG;STR;TLOD=7.48	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:56,4:0.063:2:2:.:1820,127:28:28	0/0:35,0:0.00:0:0:.:1147,0:10:25
chr17	28700183	.	TAGC	T	.	alt_allele_in_normal;str_contraction;t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=66.79;RPA=4,3;RU=AGC;STR;TLOD=6.18	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:365,3:9.772e-03:2:1:.:10821,70:178:187	0/0:286,2:7.905e-03:0:2:.:8732,59:148:138
chr17	28723906	.	A	AAT	.	germline_risk	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.51;RPA=9,10;RU=AT;STR;TLOD=6.56	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:10,7:0.189:3:4:.:305,232:4:5	0/0:5,0:0.00:0:0:.:102,0:0:3
chr17	28758810	.	C	T	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.91;TLOD=4.73	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:18,2:0.100:1:1:0.500:577,66:11:7	0/0:13,0:0.00:0:0:.:414,0:4:9
chr17	28917382	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=16;MAX_ED=.;MIN_ED=.;NLOD=22.52;TLOD=5.12	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:123,3:0.026:2:1:0.667:4012,97:60:63	0/0:82,0:0.00:0:0:.:2673,0:40:42
chr17	29293955	.	ATGG	A	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=22;MAX_ED=.;MIN_ED=.;NLOD=34.57;RPA=4,3;RU=TGG;STR;TLOD=4.00	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:116,2:0.017:2:0:.:3726,65:77:39	0/0:115,0:0.00:0:0:.:3755,0:65:50
chr17	31051155	.	G	A	.	germline_risk;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=4.86	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:7,2:0.222:1:1:0.500:234,60:3:4	0/0:6,0:0.00:0:0:.:205,0:6:0
chr17	32183310	.	T	C	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=10.23;TLOD=4.25	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:39,3:0.049:1:2:0.333:1206,106:22:17	0/0:34,0:0.00:0:0:.:1062,0:24:10
chr17	35012264	rs2074520	G	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=10.95	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,3:0.750:2:1:0.667:35,105:1:0	0/0:4,0:0.00:0:0:.:133,0:3:1
chr17	35744974	.	TTCC	T	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=15.15;RPA=4,3;RU=TCC;STR;TLOD=5.01	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:76,2:0.027:1:1:.:2479,68:40:36	0/0:68,1:0.015:0:1:.:2219,34:36:32
chr17	35750093	.	C	A	.	t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=5.72;TLOD=4.87	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:14,2:0.143:1:1:0.500:392,64:7:7	0/0:21,0:0.00:0:0:.:672,0:9:12
chr17	39684504	.	G	T	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=7.52;TLOD=4.73	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:23,2:0.080:1:1:0.500:812,68:13:10	0/0:26,0:0.00:0:0:.:933,0:17:9
chr17	39745549	.	CTG	C	.	str_contraction	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=16.67;RPA=7,6;RU=TG;STR;TLOD=6.51	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:84,4:0.027:1:3:.:2822,141:59:23	0/0:73,1:7.937e-03:0:1:.:2209,36:40:25
chr17	40488506	.	CTG	C	.	alt_allele_in_normal;str_contraction	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=39.09;RPA=7,6;RU=TG;STR;TLOD=19.30	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:250,11:0.045:9:2:.:8344,370:146:104	0/0:192,4:0.023:2:2:.:6460,139:113:79
chr17	41160428	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=48.66;TLOD=4.37	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:183,3:0.017:2:1:0.667:6174,95:95:88	0/0:172,0:0.00:0:0:.:5792,0:98:74
chr17	41907299	.	T	G	.	germline_risk;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.01;TLOD=4.22	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,3:0.429:0:3:0.00:105,46:2:2	0/0:6,1:0.143:0:1:0.00:136,3:1:5
chr17	42494785	rs11651671	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=14.61	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:0,4:1.00:3:1:0.750:0,127:0:0	0/0:5,0:0.00:0:0:.:138,0:2:3
chr17	42955992	.	AAC	A	.	alt_allele_in_normal;str_contraction	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.00;RPA=7,6;RU=AC;STR;TLOD=13.04	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:133,10:0.061:6:4:.:4360,333:65:68	0/0:118,9:0.076:5:4:.:3957,281:54:64
chr17	44190792	.	A	C	.	alt_allele_in_normal	ECNT=1;HCNT=24;MAX_ED=.;MIN_ED=.;NLOD=14.42;TLOD=6.38	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:127,29:0.149:17:12:0.414:3786,166:61:66	0/0:112,20:0.156:13:7:0.350:3409,86:50:62
chr17	44260873	.	C	T	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=9.33;TLOD=4.24	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:42,2:0.047:2:0:0.00:1407,68:25:17	0/0:31,0:0.00:0:0:.:1082,0:19:12
chr17	44365699	.	CT	C	.	alt_allele_in_normal;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.93;RPA=7,6;RU=T;STR;TLOD=4.03	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:37,3:0.094:2:1:.:1257,98:20:17	0/0:22,1:0.045:1:0:.:737,34:12:10
chr17	44902645	.	CAG	C	.	str_contraction	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=19.82;RPA=6,5;RU=AG;STR;TLOD=6.45	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:44,3:0.065:3:0:.:1520,110:22:22	0/0:68,0:0.00:0:0:.:2420,0:36:32
chr17	47213512	.	ATATTT	A	.	germline_risk;str_contraction	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;RPA=2,1;RU=TATTT;STR;TLOD=13.50	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:0,3:1.00:1:2:.:0,95:0:0	0/0:4,0:0.00:0:0:.:120,0:1:3
chr17	47697219	.	T	G	.	clustered_events;homologous_mapping_event;t_lod_fstar	ECNT=6;HCNT=1;MAX_ED=28;MIN_ED=3;NLOD=6.02;TLOD=4.52	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:20,4:0.095:0:4:0.00:0|1:47697219_T_G:677,92:10:10	0/0:22,0:0.00:0:0:.:0|1:47697219_T_G:740,0:14:8
chr17	47697222	.	A	C	.	clustered_events;homologous_mapping_event;t_lod_fstar	ECNT=6;HCNT=1;MAX_ED=28;MIN_ED=3;NLOD=6.32;TLOD=4.56	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:17,4:0.100:0:4:1.00:0|1:47697219_T_G:564,67:9:8	0/0:20,0:0.00:0:0:.:0|1:47697219_T_G:665,0:14:6
chr17	47697223	.	GGA	G	.	clustered_events;homologous_mapping_event;t_lod_fstar	ECNT=6;HCNT=1;MAX_ED=28;MIN_ED=3;NLOD=5.72;TLOD=4.56	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:19,4:0.100:0:4:.:0|1:47697219_T_G:635,97:9:10	0/0:20,0:0.00:0:0:.:0|1:47697219_T_G:688,0:14:6
chr17	47697230	.	TAGCTG	T	.	clustered_events;homologous_mapping_event;t_lod_fstar	ECNT=6;HCNT=1;MAX_ED=28;MIN_ED=3;NLOD=6.02;TLOD=6.22	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:17,2:0.105:0:2:.:0|1:47697219_T_G:538,64:8:9	0/0:20,0:0.00:0:0:.:0|1:47697219_T_G:598,0:15:5
chr17	47697237	.	T	TG	.	clustered_events;homologous_mapping_event;t_lod_fstar	ECNT=6;HCNT=1;MAX_ED=28;MIN_ED=3;NLOD=5.42;TLOD=6.27	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:16,2:0.111:0:2:.:0|1:47697219_T_G:552,66:8:8	0/0:18,0:0.00:0:0:.:0|1:47697219_T_G:608,0:13:5
chr17	47697247	.	GCA	G	.	clustered_events;homologous_mapping_event;t_lod_fstar	ECNT=6;HCNT=1;MAX_ED=28;MIN_ED=3;NLOD=5.42;TLOD=6.22	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:17,2:0.105:0:2:.:0|1:47697219_T_G:581,68:8:9	0/0:16,0:0.00:0:0:.:0|1:47697219_T_G:513,0:11:5
chr17	48958661	.	G	A	.	germline_risk;t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=4.08	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:8,2:0.222:1:1:0.500:269,52:6:2	0/0:8,0:0.00:0:0:.:279,0:2:6
chr17	50863248	.	TGTG	T	.	str_contraction	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=12.00;RPA=5,4;RU=GTG;STR;TLOD=7.52	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:48,3:0.064:3:0:.:1570,99:37:11	0/0:41,0:0.00:0:0:.:1317,0:29:12
chr17	56978101	.	C	T	.	germline_risk;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=5.50	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:9,3:0.250:3:0:0.00:274,98:5:4	0/0:8,0:0.00:0:0:.:258,0:3:5
chr17	57107061	.	A	C	.	alt_allele_in_normal;t_lod_fstar	ECNT=1;HCNT=53;MAX_ED=.;MIN_ED=.;NLOD=5.17;TLOD=5.85	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:205,38:0.124:14:24:0.632:6395,261:99:106	0/0:166,43:0.224:21:22:0.512:5250,239:70:96
chr17	57258366	.	TTTG	T	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=27.54;RPA=4,3;RU=TTG;STR;TLOD=4.63	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:127,2:0.018:1:1:.:4293,69:79:48	0/0:101,0:0.00:0:0:.:3411,0:53:48
chr17	60010336	.	T	C	.	alt_allele_in_normal;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.01;TLOD=4.74	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:14,2:0.125:1:1:0.500:407,67:10:4	0/0:32,2:0.059:1:1:0.500:961,59:14:18
chr17	60069867	.	GAC	G	.	alt_allele_in_normal;str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=8.30;RPA=8,7;RU=AC;STR;TLOD=5.14	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:40,3:0.073:1:2:.:1392,98:20:20	0/0:51,3:0.040:2:1:.:1798,104:21:30
chr17	61591130	.	C	T	.	t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=24.36;TLOD=5.65	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:78,3:0.039:2:1:0.333:2357,97:41:37	0/0:82,0:0.00:0:0:.:2403,0:42:40
chr17	62680545	.	G	T	.	t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=17.76;TLOD=4.06	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:40,2:0.048:2:0:1.00:1333,66:19:21	0/0:59,0:0.00:0:0:.:2000,0:24:35
chr17	63435236	.	A	C	.	alt_allele_in_normal;t_lod_fstar	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=29.09;TLOD=4.34	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:126,24:0.132:16:8:0.333:3490,209:58:68	0/0:142,12:0.088:11:1:0.083:3994,85:56:86
chr17	63821541	.	TCTG	T	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=12;MAX_ED=.;MIN_ED=.;NLOD=39.96;RPA=4,3;RU=CTG;STR;TLOD=4.44	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:140,2:0.014:0:2:.:4552,63:85:55	0/0:134,0:0.00:0:0:.:4349,0:71:63
chr17	63881604	.	TTC	T	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.44;RPA=7,6;RU=TC;STR;TLOD=4.41	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:36,3:0.050:2:1:.:404,104:7:6	0/0:32,1:0.019:0:1:.:510,35:9:6
chr17	64555938	.	G	T	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=18.36;TLOD=4.21	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:61,2:0.036:2:0:1.00:2124,70:25:36	0/0:68,0:0.00:0:0:.:2376,0:32:36
chr17	64758171	.	A	T	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.61;TLOD=4.11	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:21,2:0.087:0:2:1.00:679,61:13:8	0/0:12,0:0.00:0:0:.:374,0:8:4
chr17	68134503	rs8077300	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=8.94	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,4:0.571:3:1:0.750:101,88:4:0	0/0:5,0:0.00:0:0:.:181,0:5:0
chr17	69251652	.	T	C	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=9.33;TLOD=4.93	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:26,2:0.071:2:0:1.00:862,71:15:11	0/0:31,0:0.00:0:0:.:1039,0:21:10
chr17	73285445	.	ATCC	A	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=45.43;RPA=4,3;RU=TCC;STR;TLOD=4.42	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:159,2:0.014:2:0:.:5084,65:76:83	0/0:156,0:0.00:0:0:.:5049,0:74:82
chr17	75020683	.	A	G	.	t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=22.52;TLOD=4.33	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:48,2:0.041:2:0:0.00:1507,70:22:26	0/0:76,0:0.00:0:0:.:2419,0:37:39
chr17	75563886	.	A	G	.	t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=7.82;TLOD=4.56	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:25,2:0.074:0:2:1.00:833,67:11:14	0/0:26,0:0.00:0:0:.:847,0:18:8
chr17	76155368	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=12.04;TLOD=4.03	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:37,2:0.051:2:0:1.00:1285,65:18:19	0/0:40,0:0.00:0:0:.:1367,0:27:13
chr17	78223566	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=14.44;TLOD=4.00	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:49,2:0.042:2:0:1.00:1571,67:19:30	0/0:50,0:0.00:0:0:.:1611,0:31:19
chr17	78398514	rs8075131	T	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=10.04	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,3:0.600:3:0:1.00:61,101:1:1	0/0:4,0:0.00:0:0:.:123,0:2:2
chr17	81314324	rs9891595	C	T	.	germline_risk	DB;ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=12.68	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,4:0.500:2:2:0.500:135,132:2:2	0/0:4,0:0.00:0:0:.:133,0:2:2
chr17	82032650	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=17.45;TLOD=4.19	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:57,2:0.035:1:1:0.500:1994,70:26:31	0/0:58,0:0.00:0:0:.:1958,0:18:40
chr18	3129304	.	T	G	.	alt_allele_in_normal	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.26;TLOD=7.51	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:60,27:0.305:16:11:0.593:1318,119:43:17	0/0:77,20:0.208:9:11:0.450:1834,87:46:31
chr18	7135222	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=11.07;TLOD=5.88	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:52,3:0.057:1:2:0.333:1835,95:21:31	0/0:49,1:0.020:0:1:0.00:1718,32:32:17
chr18	8376731	.	T	TTCCC	.	germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.633;RPA=4,5;RU=TCCC;STR;TLOD=13.47	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:0,3:1.00:2:1:.:0,98:0:0	0/0:2,0:0.00:0:0:.:52,0:1:1
chr18	9122593	.	T	C	.	alt_allele_in_normal;clustered_events;germline_risk	ECNT=2;HCNT=6;MAX_ED=47;MIN_ED=47;NLOD=0.511;TLOD=16.81	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:87,12:0.094:3:9:0.250:2862,374:49:38	0/0:72,11:0.104:6:5:0.545:2339,353:42:30
chr18	9122640	.	G	C	.	alt_allele_in_normal;clustered_events;germline_risk;t_lod_fstar	ECNT=2;HCNT=6;MAX_ED=47;MIN_ED=47;NLOD=1.64;TLOD=4.09	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:81,3:0.040:1:2:0.333:2651,108:44:37	0/0:75,6:0.080:4:2:0.667:2424,219:39:36
chr18	11644683	.	G	C	.	alt_allele_in_normal	ECNT=2;HCNT=1;MAX_ED=1;MIN_ED=1;NLOD=19.99;TLOD=24.90	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:208,9:0.049:5:4:0.556:0|1:11644683_G_C:7207,303:134:74	0/0:193,6:0.043:4:2:0.667:0|1:11644683_G_C:6717,192:103:90
chr18	11644684	.	A	G	.	alt_allele_in_normal	ECNT=2;HCNT=1;MAX_ED=1;MIN_ED=1;NLOD=19.09;TLOD=24.94	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:209,9:0.049:5:4:0.444:0|1:11644683_G_C:6691,258:135:74	0/0:196,7:0.044:4:3:0.429:0|1:11644683_G_C:6352,222:106:90
chr18	12986927	.	TTCC	T	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=10.52;RPA=6,5;RU=TCC;STR;TLOD=5.43	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:47,2:0.043:1:1:.:1546,67:24:23	0/0:52,1:0.020:1:0:.:1721,20:33:19
chr18	13056430	.	C	CCATGCTGG	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=18.61;RPA=1,2;RU=CATGCTGG;STR;TLOD=5.12	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:71,1:0.031:1:0:.:2451,35:42:29	0/0:63,0:0.00:0:0:.:2144,0:39:24
chr18	13152141	.	T	C	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=8.73;TLOD=4.44	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:31,2:0.065:0:2:0.00:1025,67:17:14	0/0:35,0:0.00:0:0:.:1167,0:14:21
chr18	14184080	.	A	C	.	alt_allele_in_normal;t_lod_fstar	ECNT=1;HCNT=18;MAX_ED=.;MIN_ED=.;NLOD=40.01;TLOD=4.22	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:193,4:0.024:2:2:0.500:6416,140:88:105	0/0:224,6:0.030:4:2:0.333:7535,212:128:96
chr18	14338137	rs113877654	C	T	.	germline_risk;t_lod_fstar	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=6.05	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,2:0.500:2:0:0.00:71,63:2:0	0/0:5,0:0.00:0:0:.:176,0:5:0
chr18	14393072	.	C	T	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=11.43;TLOD=4.33	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:28,3:0.071:1:2:0.667:957,100:19:9	0/0:42,0:0.00:0:0:.:1407,0:16:26
chr18	23555009	.	C	T	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.21;TLOD=4.19	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:19,2:0.095:0:2:1.00:665,61:12:7	0/0:14,0:0.00:0:0:.:485,0:6:8
chr18	23842590	.	GTC	G	.	alt_allele_in_normal;str_contraction;t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=13.74;RPA=7,6;RU=TC;STR;TLOD=4.38	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:104,3:0.041:1:2:.:3566,110:59:45	0/0:108,5:0.049:3:2:.:3706,137:53:55
chr18	28177084	.	A	C	.	germline_risk;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.16;TLOD=5.38	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,3:0.667:0:3:1.00:64,99:2:0	0/0:5,0:0.00:0:0:.:125,0:1:4
chr18	31456471	.	T	C	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=14.14;TLOD=4.37	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:57,4:0.038:0:4:0.00:1822,135:33:24	0/0:54,0:0.00:0:0:.:1708,0:33:21
chr18	32412692	.	A	G	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.64;TLOD=4.43	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:16,2:0.111:0:2:1.00:538,66:10:6	0/0:75,1:0.014:0:1:1.00:2488,35:43:32
chr18	35369429	.	G	T	.	t_lod_fstar	ECNT=2;HCNT=1;MAX_ED=2;MIN_ED=2;NLOD=27.39;TLOD=4.24	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:79,1:0.024:0:1:0.00:0|1:35369429_G_T:2672,20:42:37	0/0:90,0:0.00:0:0:.:0|1:35369429_G_T:3064,0:52:38
chr18	35369431	.	T	A	.	t_lod_fstar	ECNT=2;HCNT=1;MAX_ED=2;MIN_ED=2;NLOD=26.79;TLOD=4.25	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:78,2:0.025:0:2:0.00:0|1:35369429_G_T:2561,53:42:36	0/0:90,0:0.00:0:0:.:0|1:35369429_G_T:2945,0:52:38
chr18	43270221	.	GCAA	G	.	str_contraction	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=12.89;RPA=6,5;RU=CAA;STR;TLOD=11.92	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:47,4:0.078:3:1:.:1653,136:32:15	0/0:57,1:0.017:1:0:.:1974,36:25:32
chr18	45730880	rs3819178	G	C	.	germline_risk;t_lod_fstar	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=6.20	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:6,2:0.250:1:1:0.500:203,72:2:4	0/0:5,0:0.00:0:0:.:170,0:3:2
chr18	49586670	.	C	A	.	t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=5.42;TLOD=4.30	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:21,2:0.087:0:2:1.00:712,63:9:12	0/0:18,0:0.00:0:0:.:603,0:11:7
chr18	50055396	.	A	G	.	t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=11.39;TLOD=4.45	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:46,2:0.042:1:1:0.500:1497,71:22:24	0/0:39,0:0.00:0:0:.:1284,0:23:16
chr18	50285904	.	TCTG	T	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=12.58;RPA=6,5;RU=CTG;STR;TLOD=5.31	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:55,2:0.038:1:1:.:1776,66:26:29	0/0:52,1:0.019:1:0:.:1677,32:28:24
chr18	51058424	.	A	C	.	alt_allele_in_normal;t_lod_fstar	ECNT=1;HCNT=5;MAX_ED=.;MIN_ED=.;NLOD=10.13;TLOD=4.62	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:69,32:0.276:17:15:0.469:1959,170:38:31	0/0:69,13:0.167:2:11:0.846:1901,35:34:35
chr18	54159555	.	CCA	C	.	germline_risk;str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.900;RPA=6,5;RU=CA;STR;TLOD=5.40	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:7,2:0.222:0:2:.:231,70:4:3	0/0:3,0:0.00:0:0:.:103,0:1:2
chr18	55260169	rs35969244	T	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.16;TLOD=18.41	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,5:0.833:2:3:0.400:35,172:1:0	0/0:4,0:0.00:0:0:.:120,0:2:2
chr18	56759036	.	ATTTG	A	.	germline_risk;str_contraction	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;RPA=2,1;RU=TTTG;STR;TLOD=11.02	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:6,3:0.333:2:1:.:195,97:2:4	0/0:4,0:0.00:0:0:.:131,0:1:3
chr18	59929448	rs17066403	C	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=6.52	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,2:0.667:2:0:0.00:36,64:1:0	0/0:6,0:0.00:0:0:.:204,0:4:2
chr18	63416192	.	C	T	.	germline_risk;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=4.71	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:10,2:0.167:0:2:1.00:337,61:3:7	0/0:4,0:0.00:0:0:.:135,0:4:0
chr18	74389990	.	CTCT	C	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=15.87;RPA=6,5;RU=TCT;STR;TLOD=4.86	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:91,2:0.023:1:1:.:3019,68:56:35	0/0:70,1:0.015:0:1:.:2355,36:38:32
chr18	77268542	.	GCCT	G	.	alt_allele_in_normal;str_contraction	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.50;RPA=9,8;RU=CCT;STR;TLOD=6.50	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:51,3:0.057:2:1:.:1384,85:30:21	0/0:57,3:0.050:0:3:.:1599,73:33:24
chr19	327276	.	AGT	A	.	alt_allele_in_normal;clustered_events	ECNT=3;HCNT=16;MAX_ED=6;MIN_ED=2;NLOD=4.68;TLOD=9.13	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:132,20:0.138:4:16:.:0|1:327276_AGT_A:4271,509:31:101	0/0:117,15:0.114:5:10:.:0|1:327276_AGT_A:3906,425:29:88
chr19	327278	.	T	TAAAA	.	alt_allele_in_normal;clustered_events	ECNT=3;HCNT=16;MAX_ED=6;MIN_ED=2;NLOD=4.38;RPA=3,7;RU=A;STR;TLOD=9.08	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:129,20:0.137:4:16:.:0|1:327276_AGT_A:3836,343:30:99	0/0:115,15:0.115:5:10:.:0|1:327276_AGT_A:3498,306:28:87
chr19	327282	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=3;HCNT=16;MAX_ED=6;MIN_ED=2;NLOD=5.47;TLOD=8.41	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:122,12:0.098:4:8:0.333:0|1:327276_AGT_A:4035,146:26:96	0/0:117,15:0.112:5:10:0.333:0|1:327276_AGT_A:4039,240:26:91
chr19	1012587	.	C	A	.	germline_risk;t_lod_fstar	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=4.56	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:12,2:0.154:1:1:0.500:394,60:5:7	0/0:4,0:0.00:0:0:.:135,0:1:3
chr19	1037716	.	T	C	.	alt_allele_in_normal;clustered_events	ECNT=14;HCNT=1;MAX_ED=156;MIN_ED=1;NLOD=16.24;TLOD=67.70	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:441,24:0.055:12:12:0.500:0|1:1037716_T_C:14022,853:209:232	0/0:345,17:0.056:7:10:0.412:0|1:1037716_T_C:11075,610:166:179
chr19	1037717	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=14;HCNT=1;MAX_ED=156;MIN_ED=1;NLOD=11.76;TLOD=67.53	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:444,25:0.054:12:13:0.480:0|1:1037716_T_C:15323,833:210:234	0/0:342,18:0.059:7:11:0.389:0|1:1037716_T_C:11858,599:164:178
chr19	1037802	.	A	C	.	alt_allele_in_normal;clustered_events	ECNT=14;HCNT=1;MAX_ED=156;MIN_ED=1;NLOD=16.77;TLOD=64.30	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:294,21:0.069:11:10:0.476:0|1:1037716_T_C:9037,688:131:163	0/0:241,15:0.056:4:11:0.733:0|1:1037716_T_C:7379,474:120:121
chr19	1037808	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=14;HCNT=1;MAX_ED=156;MIN_ED=1;NLOD=21.56;TLOD=58.18	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:279,19:0.067:10:9:0.526:0|1:1037716_T_C:9347,585:128:151	0/0:239,12:0.052:4:8:0.333:0|1:1037716_T_C:8122,370:116:123
chr19	1037811	.	G	C	.	alt_allele_in_normal;clustered_events	ECNT=14;HCNT=1;MAX_ED=156;MIN_ED=1;NLOD=26.06;TLOD=58.34	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:266,18:0.068:9:9:0.500:0|1:1037716_T_C:8785,614:124:142	0/0:234,12:0.048:4:8:0.333:0|1:1037716_T_C:7699,423:115:119
chr19	1037813	.	T	C	.	alt_allele_in_normal;clustered_events	ECNT=14;HCNT=1;MAX_ED=156;MIN_ED=1;NLOD=26.06;TLOD=55.31	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:261,18:0.068:9:9:0.500:0|1:1037716_T_C:8199,508:121:140	0/0:229,12:0.048:4:8:0.333:0|1:1037716_T_C:7160,333:112:117
chr19	1037829	.	A	G	.	alt_allele_in_normal;clustered_events	ECNT=14;HCNT=1;MAX_ED=156;MIN_ED=1;NLOD=29.61;TLOD=49.35	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:240,14:0.066:8:6:0.429:0|1:1037716_T_C:7223,456:112:128	0/0:191,8:0.039:3:5:0.625:0|1:1037716_T_C:5801,264:101:90
chr19	1037834	.	C	A	.	alt_allele_in_normal;clustered_events	ECNT=14;HCNT=1;MAX_ED=156;MIN_ED=1;NLOD=29.91;TLOD=39.62	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:233,13:0.056:7:6:0.462:0|1:1037716_T_C:6846,420:109:124	0/0:193,8:0.039:3:5:0.625:0|1:1037716_T_C:5723,238:103:90
chr19	1037843	.	G	T	.	alt_allele_in_normal;clustered_events	ECNT=14;HCNT=1;MAX_ED=156;MIN_ED=1;NLOD=34.99;TLOD=30.23	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:215,11:0.047:6:5:0.545:0|1:1037716_T_C:6787,346:103:112	0/0:186,6:0.031:2:4:0.333:0|1:1037716_T_C:5868,187:96:90
chr19	1037845	.	A	G	.	alt_allele_in_normal;clustered_events	ECNT=14;HCNT=1;MAX_ED=156;MIN_ED=1;NLOD=34.39;TLOD=30.36	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:216,10:0.048:6:4:0.400:0|1:1037716_T_C:6586,338:103:113	0/0:181,6:0.032:2:4:0.667:0|1:1037716_T_C:5566,200:96:85
chr19	1037849	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=14;HCNT=1;MAX_ED=156;MIN_ED=1;NLOD=32.59;TLOD=33.66	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:210,10:0.053:6:4:0.600:0|1:1037716_T_C:6668,330:101:109	0/0:178,5:0.033:2:3:0.400:0|1:1037716_T_C:5664,154:93:85
chr19	1037857	.	T	C	.	alt_allele_in_normal;clustered_events	ECNT=14;HCNT=1;MAX_ED=156;MIN_ED=1;NLOD=33.19;TLOD=27.63	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:202,10:0.049:6:4:0.600:0|1:1037716_T_C:6297,338:100:102	0/0:185,6:0.032:3:3:0.500:0|1:1037716_T_C:5709,194:91:94
chr19	1037870	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=14;HCNT=1;MAX_ED=156;MIN_ED=1;NLOD=24.47;TLOD=27.94	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:193,13:0.052:8:5:0.385:0|1:1037716_T_C:6434,425:99:94	0/0:174,7:0.035:4:3:0.429:0|1:1037716_T_C:5979,212:82:92
chr19	1037872	.	C	A	.	alt_allele_in_normal;clustered_events	ECNT=14;HCNT=1;MAX_ED=156;MIN_ED=1;NLOD=21.46;TLOD=28.06	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:188,13:0.053:8:5:0.385:0|1:1037716_T_C:6417,426:97:91	0/0:169,7:0.037:4:3:0.429:0|1:1037716_T_C:5853,220:81:88
chr19	1091774	.	T	G	.	alt_allele_in_normal;t_lod_fstar	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=5.44;TLOD=5.16	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:51,18:0.258:7:11:0.389:1267,105:33:18	0/0:45,10:0.192:7:3:0.700:1082,40:29:16
chr19	1236047	.	AGTG	A	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=7.74;RPA=7,6;RU=GTG;STR;TLOD=5.21	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:20,3:0.100:0:3:.:661,96:11:9	0/0:28,0:0.00:0:0:.:889,0:17:11
chr19	1432578	.	A	C	.	alt_allele_in_normal	ECNT=1;HCNT=6;MAX_ED=.;MIN_ED=.;NLOD=4.33;TLOD=10.81	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:202,42:0.162:26:16:0.381:5669,451:83:119	0/0:164,41:0.210:20:21:0.512:4789,386:78:86
chr19	1578372	.	GCTC	G	.	alt_allele_in_normal;germline_risk;str_contraction;t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.99;RPA=7,6;RU=CTC;STR;TLOD=5.04	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:62,2:0.032:2:0:.:2049,66:35:27	0/0:49,3:0.059:1:2:.:1657,100:25:24
chr19	1818830	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=11.14;TLOD=4.04	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:31,3:0.065:3:0:1.00:1086,73:18:13	0/0:42,0:0.00:0:0:.:1418,0:17:25
chr19	1881330	.	G	A	.	alt_allele_in_normal	ECNT=1;HCNT=16;MAX_ED=.;MIN_ED=.;NLOD=27.76;TLOD=7.95	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:141,6:0.038:2:4:0.333:4791,184:70:71	0/0:145,2:0.016:1:1:0.500:4906,53:76:69
chr19	2099360	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=7.82;TLOD=4.03	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:26,2:0.071:1:1:0.500:871,62:15:11	0/0:26,0:0.00:0:0:.:876,0:18:8
chr19	2206623	.	AGT	A	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=9.18;RPA=6,5;RU=GT;STR;TLOD=4.15	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:33,2:0.057:2:0:.:1057,61:17:16	0/0:41,1:0.023:0:1:.:1322,33:26:15
chr19	2733503	.	CGA	C	.	alt_allele_in_normal;str_contraction	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=3.51;RPA=8,7;RU=GA;STR;TLOD=7.08	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:48,5:0.083:3:2:.:1372,146:23:25	0/0:68,5:0.076:3:2:.:1888,143:30:38
chr19	3273810	.	A	C	.	alt_allele_in_normal;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=10.16;TLOD=4.06	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:58,9:0.098:6:3:0.333:1933,130:28:30	0/0:50,4:0.074:2:2:0.500:1660,38:25:25
chr19	3653161	.	G	T	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.01;TLOD=4.79	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:9,2:0.182:0:2:0.00:296,61:4:5	0/0:10,0:0.00:0:0:.:342,0:7:3
chr19	4511759	.	C	CCA	.	alt_allele_in_normal	ECNT=2;HCNT=24;MAX_ED=2;MIN_ED=2;NLOD=94.54;TLOD=24.39	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:516,8:0.021:2:6:.:0|1:4511759_C_CCA:17774,261:266:250	0/0:468,10:0.025:4:6:.:0|1:4511759_C_CCA:16079,323:244:224
chr19	4511761	.	GAC	G	.	alt_allele_in_normal	ECNT=2;HCNT=24;MAX_ED=2;MIN_ED=2;NLOD=104.60;TLOD=17.96	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:553,5:0.015:1:4:.:0|1:4511759_C_CCA:19068,158:287:266	0/0:505,4:0.020:2:2:.:0|1:4511759_C_CCA:17342,133:266:239
chr19	4676648	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.41;TLOD=5.04	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:15,3:0.125:2:1:0.667:506,97:4:11	0/0:9,0:0.00:0:0:.:290,0:5:4
chr19	4682866	.	CAG	C	.	germline_risk;str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.09;RPA=7,6;RU=AG;STR;TLOD=4.84	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:7,2:0.250:1:1:.:233,71:6:1	0/0:8,0:0.00:0:0:.:290,0:4:4
chr19	4817276	.	AAGG	A	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=11.58;RPA=8,7;RU=AGG;STR;TLOD=4.66	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:58,2:0.037:1:1:.:1866,67:35:23	0/0:53,1:0.020:0:1:.:1724,30:29:24
chr19	5286337	rs8103500	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=7.35	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:0,3:1.00:2:1:0.667:0,98:0:0	0/0:5,0:0.00:0:0:.:168,0:2:3
chr19	5788217	.	GCACA	G	.	PASS	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=10.80;RPA=9,7;RU=CA;STR;TLOD=8.51	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:41,3:0.035:1:2:.:1303,86:18:23	0/0:37,0:0.00:0:0:.:1083,0:15:19
chr19	5827885	.	T	C	.	germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=13.00	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:5,4:0.500:2:2:0.500:163,135:4:1	0/0:4,0:0.00:0:0:.:127,0:4:0
chr19	6669963	.	G	A	.	PASS	ECNT=1;HCNT=16;MAX_ED=.;MIN_ED=.;NLOD=70.84;TLOD=20.69	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:256,12:0.047:3:9:0.250:8615,380:120:136	0/0:263,0:0.00:0:0:.:8835,0:118:145
chr19	6709627	.	CAG	C	.	alt_allele_in_normal	ECNT=1;HCNT=24;MAX_ED=.;MIN_ED=.;NLOD=8.40;TLOD=13.03	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:177,8:0.034:3:5:.:5814,280:81:96	0/0:146,9:0.064:1:8:.:4826,238:78:68
chr19	6710573	.	GGAGA	G	.	germline_risk;t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=0.916;RPA=9,7;RU=GA;STR;TLOD=5.54	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:7,2:0.125:0:2:.:173,63:2:4	0/0:4,0:0.00:0:0:.:139,0:1:3
chr19	6733046	.	T	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=9.93;TLOD=4.38	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:32,2:0.061:1:1:0.500:1033,67:19:13	0/0:33,0:0.00:0:0:.:1058,0:18:15
chr19	7678296	.	TTC	T	.	alt_allele_in_normal;str_contraction	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=45.00;RPA=7,6;RU=TC;STR;TLOD=9.22	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:245,7:0.030:5:2:.:7980,233:134:111	0/0:229,6:0.027:2:4:.:7346,196:123:106
chr19	8337759	.	GCA	G	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=20.03;RPA=7,6;RU=CA;STR;TLOD=5.40	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:62,3:0.051:2:1:.:1716,86:34:28	0/0:72,0:0.00:0:0:.:2115,0:38:34
chr19	8603901	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=12.94;TLOD=4.03	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:67,2:0.033:1:1:0.500:2208,69:31:36	0/0:46,0:0.00:0:0:.:1567,0:31:15
chr19	8882230	.	C	T	.	alt_allele_in_normal;clustered_events;germline_risk	ECNT=17;HCNT=9;MAX_ED=208;MIN_ED=1;NLOD=0.637;TLOD=8.74	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:40,3:0.068:0:3:1.00:0|1:8882230_C_T:1332,95:23:17	0/0:30,2:0.063:1:1:0.500:0|1:8882230_C_T:1003,67:15:15
chr19	8882231	.	C	T	.	alt_allele_in_normal;clustered_events;germline_risk	ECNT=17;HCNT=9;MAX_ED=208;MIN_ED=1;NLOD=0.637;TLOD=8.71	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:40,3:0.067:0:3:1.00:0|1:8882230_C_T:1342,94:23:17	0/0:30,2:0.063:1:1:0.500:0|1:8882230_C_T:1007,67:15:15
chr19	8882236	.	T	C	.	alt_allele_in_normal;clustered_events;germline_risk	ECNT=17;HCNT=9;MAX_ED=208;MIN_ED=1;NLOD=0.933;TLOD=8.74	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:40,3:0.068:0:3:0.00:0|1:8882230_C_T:1338,98:25:15	0/0:29,2:0.061:1:1:0.500:0|1:8882230_C_T:945,68:14:15
chr19	8882237	.	T	A	.	alt_allele_in_normal;clustered_events;germline_risk	ECNT=17;HCNT=4;MAX_ED=208;MIN_ED=1;NLOD=1.84;TLOD=11.98	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:40,3:0.082:0:3:0.00:0|1:8882237_T_A:1335,88:25:15	0/0:29,2:0.056:1:1:0.500:0|1:8882237_T_A:970,66:14:15
chr19	8882240	.	T	A	.	alt_allele_in_normal;clustered_events	ECNT=17;HCNT=4;MAX_ED=208;MIN_ED=1;NLOD=3.04;TLOD=18.98	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:43,4:0.118:1:3:0.250:0|1:8882237_T_A:1391,134:29:14	0/0:35,2:0.050:1:1:0.500:0|1:8882237_T_A:1123,68:19:16
chr19	8882249	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=17;HCNT=4;MAX_ED=208;MIN_ED=1;NLOD=3.64;TLOD=29.70	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:48,9:0.158:4:5:0.556:0|1:8882237_T_A:1640,281:31:17	0/0:37,2:0.048:1:1:0.500:0|1:8882237_T_A:1248,66:22:15
chr19	8882250	.	A	G	.	alt_allele_in_normal;clustered_events	ECNT=17;HCNT=4;MAX_ED=208;MIN_ED=1;NLOD=4.24;TLOD=29.78	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:49,9:0.161:4:5:0.556:0|1:8882237_T_A:1593,314:32:17	0/0:39,2:0.045:1:1:0.500:0|1:8882237_T_A:1250,74:24:15
chr19	8882332	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=17;HCNT=16;MAX_ED=208;MIN_ED=1;NLOD=11.90;TLOD=6.67	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:131,5:0.041:3:2:0.600:4562,125:67:64	0/0:120,6:0.052:5:1:0.833:4171,186:68:52
chr19	8882382	.	GGGA	G	.	clustered_events;homologous_mapping_event;str_contraction;t_lod_fstar	ECNT=17;HCNT=13;MAX_ED=208;MIN_ED=1;NLOD=26.76;RPA=2,1;RU=GGA;STR;TLOD=4.79	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:106,2:0.021:1:1:.:3619,68:63:43	0/0:99,0:0.00:0:0:.:3423,0:55:44
chr19	8882405	.	AG	A	.	clustered_events;homologous_mapping_event;t_lod_fstar	ECNT=17;HCNT=25;MAX_ED=208;MIN_ED=1;NLOD=19.84;RPA=3,2;RU=G;STR;TLOD=5.02	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:74,2:0.027:1:1:.:0|1:8882405_AG_A:2490,64:46:28	0/0:72,0:0.00:0:0:.:0|1:8882405_AG_A:2391,0:40:32
chr19	8882415	.	G	C	.	clustered_events;homologous_mapping_event;t_lod_fstar	ECNT=17;HCNT=18;MAX_ED=208;MIN_ED=1;NLOD=19.26;TLOD=4.88	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:69,2:0.014:1:1:.:0|1:8882415_G_C:2271,56:44:25	0/0:64,0:0.00:0:0:.:0|1:8882415_G_C:2138,0:32:32
chr19	8882417	.	GGA	G	.	clustered_events;homologous_mapping_event;t_lod_fstar	ECNT=17;HCNT=18;MAX_ED=208;MIN_ED=1;NLOD=18.36;TLOD=5.04	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:66,2:0.028:1:1:.:0|1:8882415_G_C:2185,66:41:25	0/0:63,0:0.00:0:0:.:0|1:8882415_G_C:2102,0:31:32
chr19	8882421	.	T	C	.	clustered_events;homologous_mapping_event;t_lod_fstar	ECNT=17;HCNT=25;MAX_ED=208;MIN_ED=1;NLOD=17.16;TLOD=5.12	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:59,2:0.031:1:1:0.500:0|1:8882405_AG_A:1856,70:33:26	0/0:57,0:0.00:0:0:.:0|1:8882405_AG_A:1831,0:26:31
chr19	8882431	.	G	A	.	clustered_events;homologous_mapping_event;t_lod_fstar	ECNT=17;HCNT=18;MAX_ED=208;MIN_ED=1;NLOD=13.85;TLOD=5.25	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:51,2:0.036:1:1:0.500:1732,65:30:21	0/0:43,0:0.00:0:0:.:1483,0:20:23
chr19	8882435	.	C	G	.	clustered_events;homologous_mapping_event;t_lod_fstar	ECNT=17;HCNT=22;MAX_ED=208;MIN_ED=1;NLOD=12.64;TLOD=5.35	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:48,2:0.040:1:1:0.500:0|1:8882435_C_G:1700,64:29:19	0/0:42,0:0.00:0:0:.:0|1:8882435_C_G:1438,0:19:23
chr19	8882436	.	A	G	.	clustered_events;homologous_mapping_event;t_lod_fstar	ECNT=17;HCNT=22;MAX_ED=208;MIN_ED=1;NLOD=12.94;TLOD=5.34	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:47,2:0.039:1:1:0.500:0|1:8882435_C_G:1552,58:29:18	0/0:41,0:0.00:0:0:.:0|1:8882435_C_G:1337,0:19:22
chr19	8882438	.	A	T	.	clustered_events;homologous_mapping_event;t_lod_fstar	ECNT=17;HCNT=22;MAX_ED=208;MIN_ED=1;NLOD=12.64;TLOD=5.35	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:47,2:0.040:1:1:0.500:0|1:8882435_C_G:1487,64:30:17	0/0:40,0:0.00:0:0:.:0|1:8882435_C_G:1282,0:18:22
chr19	8882725	.	T	G	.	alt_allele_in_normal	ECNT=2;HCNT=12;MAX_ED=1;MIN_ED=1;NLOD=74.98;TLOD=26.21	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:306,10:0.035:6:4:0.600:9695,350:149:157	0/0:327,6:0.020:3:3:0.500:10403,206:145:182
chr19	8882726	.	G	C	.	alt_allele_in_normal	ECNT=2;HCNT=6;MAX_ED=1;MIN_ED=1;NLOD=76.57;TLOD=17.70	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:304,10:0.035:6:4:0.600:10662,363:149:155	0/0:326,6:0.020:3:3:0.500:11441,213:145:181
chr19	8886739	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=8;HCNT=43;MAX_ED=104;MIN_ED=6;NLOD=15.49;TLOD=15.10	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:244,6:0.028:5:1:0.833:0|1:8886739_G_A:8295,188:142:102	0/0:204,7:0.048:4:3:0.571:0|1:8886739_G_A:6963,213:108:96
chr19	8886745	.	A	C	.	alt_allele_in_normal;clustered_events	ECNT=8;HCNT=43;MAX_ED=104;MIN_ED=6;NLOD=2.23;TLOD=26.84	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:235,8:0.050:7:1:0.125:0|1:8886739_G_A:7546,265:136:99	0/0:193,11:0.067:6:5:0.455:0|1:8886739_G_A:6290,384:101:92
chr19	8886799	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=8;HCNT=44;MAX_ED=104;MIN_ED=6;NLOD=32.22;TLOD=11.80	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:197,8:0.036:6:2:0.250:6797,261:104:93	0/0:182,7:0.033:3:4:0.571:6275,232:106:76
chr19	8886831	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=8;HCNT=42;MAX_ED=104;MIN_ED=6;NLOD=7.65;TLOD=16.28	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:145,6:0.043:4:2:0.667:5059,199:81:64	0/0:138,8:0.055:6:2:0.750:4851,267:79:59
chr19	8886832	.	A	G	.	alt_allele_in_normal;clustered_events	ECNT=8;HCNT=36;MAX_ED=104;MIN_ED=6;NLOD=34.05;TLOD=10.11	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:146,4:0.029:3:1:0.250:4818,132:81:65	0/0:143,2:0.014:0:2:1.00:4717,61:83:60
chr19	8886839	.	A	G	.	alt_allele_in_normal;clustered_events	ECNT=8;HCNT=78;MAX_ED=104;MIN_ED=6;NLOD=4.04;TLOD=19.66	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:130,7:0.054:5:2:0.286:0|1:8886839_A_G:4285,226:73:57	0/0:129,7:0.060:5:2:0.286:0|1:8886839_A_G:4239,231:70:59
chr19	8886841	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=8;HCNT=78;MAX_ED=104;MIN_ED=6;NLOD=7.33;TLOD=19.69	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:128,5:0.054:4:1:0.200:0|1:8886839_A_G:4456,133:71:57	0/0:128,6:0.054:4:2:0.333:0|1:8886839_A_G:4493,178:71:57
chr19	8886843	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=8;HCNT=78;MAX_ED=104;MIN_ED=6;NLOD=10.63;TLOD=13.38	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:124,3:0.040:2:1:0.333:0|1:8886839_A_G:4165,91:68:56	0/0:126,6:0.048:4:2:0.333:0|1:8886839_A_G:4345,184:71:55
chr19	8888705	.	C	A	.	alt_allele_in_normal	ECNT=1;HCNT=16;MAX_ED=.;MIN_ED=.;NLOD=12.92;TLOD=18.62	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:420,7:0.023:4:3:0.429:14362,236:241:179	0/0:396,26:0.076:13:13:0.500:13737,854:196:200
chr19	8895739	.	TTGG	T	.	alt_allele_in_normal;clustered_events	ECNT=8;HCNT=4;MAX_ED=56;MIN_ED=9;NLOD=2.38;TLOD=10.16	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:115,4:0.019:1:3:.:0|1:8895739_TTGG_T:3594,128:46:63	0/0:107,6:0.034:5:1:.:0|1:8895739_TTGG_T:3169,185:53:43
chr19	8895748	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=8;HCNT=4;MAX_ED=56;MIN_ED=9;NLOD=21.43;TLOD=7.42	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:115,3:0.025:1:2:0.333:0|1:8895739_TTGG_T:3980,100:51:64	0/0:130,2:0.031:2:0:1.00:0|1:8895739_TTGG_T:4557,67:75:55
chr19	8895750	.	G	GCAT	.	alt_allele_in_normal;clustered_events	ECNT=8;HCNT=4;MAX_ED=56;MIN_ED=9;NLOD=29.53;TLOD=7.44	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:113,3:0.026:1:2:.:0|1:8895739_TTGG_T:3920,105:50:63	0/0:122,2:0.016:2:0:.:0|1:8895739_TTGG_T:4250,68:70:52
chr19	8895754	.	G	A	.	clustered_events;multi_event_alt_allele_in_normal	ECNT=8;HCNT=4;MAX_ED=56;MIN_ED=9;NLOD=31.32;TLOD=7.51	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:108,3:0.027:1:2:0.333:0|1:8895739_TTGG_T:3729,99:49:59	0/0:116,1:8.403e-03:1:0:1.00:0|1:8895739_TTGG_T:4043,31:69:47
chr19	8895759	.	G	A	.	clustered_events;homologous_mapping_event	ECNT=8;HCNT=4;MAX_ED=56;MIN_ED=9;NLOD=33.41;TLOD=7.55	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:102,3:0.028:1:2:0.333:0|1:8895739_TTGG_T:3454,99:46:56	0/0:111,0:0.00:0:0:.:0|1:8895739_TTGG_T:3797,0:66:45
chr19	8895766	.	A	T	.	clustered_events;homologous_mapping_event	ECNT=8;HCNT=4;MAX_ED=56;MIN_ED=9;NLOD=32.51;TLOD=7.49	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:108,3:0.027:1:2:0.667:0|1:8895739_TTGG_T:3519,97:51:57	0/0:103,0:0.00:0:0:.:0|1:8895739_TTGG_T:3376,0:61:42
chr19	8895773	.	A	AGGTGTAGGG	.	clustered_events;homologous_mapping_event	ECNT=8;HCNT=4;MAX_ED=56;MIN_ED=9;NLOD=30.42;TLOD=7.66	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:96,3:0.030:1:2:.:0|1:8895739_TTGG_T:3095,100:48:48	0/0:94,0:0.00:0:0:.:0|1:8895739_TTGG_T:3084,0:58:36
chr19	8895795	.	G	A	.	alt_allele_in_normal;clustered_events;germline_risk	ECNT=8;HCNT=8;MAX_ED=56;MIN_ED=9;NLOD=2.18;TLOD=10.93	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:84,4:0.045:4:0:1.00:2809,116:38:46	0/0:76,4:0.061:4:0:1.00:2555,123:47:29
chr19	8896029	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=14;HCNT=9;MAX_ED=125;MIN_ED=24;NLOD=37.56;TLOD=10.49	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:249,8:0.031:5:3:0.375:8634,246:156:93	0/0:215,9:0.035:3:6:0.667:7427,300:122:93
chr19	8896053	.	G	A	.	alt_allele_in_normal;clustered_events;germline_risk	ECNT=14;HCNT=22;MAX_ED=125;MIN_ED=24;NLOD=1.86;TLOD=14.45	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:213,5:0.029:2:3:0.400:7444,165:136:77	0/0:166,12:0.073:6:6:0.500:5917,395:95:71
chr19	8896076	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=14;HCNT=12;MAX_ED=125;MIN_ED=24;NLOD=17.26;TLOD=12.51	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:187,4:0.027:2:2:0.500:0|1:8896076_G_A:6259,142:110:77	0/0:155,7:0.043:5:2:0.714:0|1:8896076_G_A:5312,240:82:73
chr19	8896084	.	C	A	.	alt_allele_in_normal;clustered_events	ECNT=14;HCNT=12;MAX_ED=125;MIN_ED=24;NLOD=8.57;TLOD=18.79	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:170,6:0.041:3:3:0.500:0|1:8896076_G_A:5757,188:94:76	0/0:158,9:0.055:6:3:0.333:0|1:8896076_G_A:5411,290:83:75
chr19	8896086	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=14;HCNT=14;MAX_ED=125;MIN_ED=24;NLOD=6.17;TLOD=22.08	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:162,7:0.048:3:4:0.429:0|1:8896086_G_A:5264,236:88:74	0/0:152,9:0.058:6:3:0.667:0|1:8896086_G_A:5043,311:80:72
chr19	8896088	.	T	G	.	alt_allele_in_normal;clustered_events;germline_risk	ECNT=14;HCNT=14;MAX_ED=125;MIN_ED=24;NLOD=1.94;TLOD=21.52	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:158,8:0.025:4:4:0.500:0|1:8896086_G_A:5014,268:86:72	0/0:133,9:0.033:6:3:0.667:0|1:8896086_G_A:4250,314:70:63
chr19	8896092	.	TATA	T	.	alt_allele_in_normal;clustered_events	ECNT=14;HCNT=12;MAX_ED=125;MIN_ED=24;NLOD=6.16;TLOD=22.19	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:155,8:0.050:4:4:.:0|1:8896076_G_A:4853,270:82:73	0/0:147,9:0.058:6:3:.:0|1:8896076_G_A:4658,301:82:65
chr19	8896131	.	GA	G	.	alt_allele_in_normal;clustered_events	ECNT=14;HCNT=7;MAX_ED=125;MIN_ED=24;NLOD=12.68;TLOD=8.16	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:64,3:0.044:1:2:.:0|1:8896131_GA_G:2218,103:30:34	0/0:87,5:0.056:2:3:.:0|1:8896131_GA_G:3052,175:50:37
chr19	8896137	.	AT	A	.	alt_allele_in_normal;clustered_events	ECNT=14;HCNT=7;MAX_ED=125;MIN_ED=24;NLOD=10.28;RPA=3,2;RU=T;STR;TLOD=8.24	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:61,3:0.047:1:2:.:0|1:8896131_GA_G:1938,102:28:33	0/0:73,5:0.062:2:3:.:0|1:8896131_GA_G:2358,174:44:29
chr19	8896142	.	A	T	.	alt_allele_in_normal;clustered_events	ECNT=14;HCNT=7;MAX_ED=125;MIN_ED=24;NLOD=6.97;TLOD=8.26	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:58,3:0.048:1:2:0.667:0|1:8896131_GA_G:1918,98:27:31	0/0:63,5:0.071:2:3:0.600:0|1:8896131_GA_G:2072,165:39:24
chr19	8896145	.	G	T	.	alt_allele_in_normal;clustered_events	ECNT=14;HCNT=7;MAX_ED=125;MIN_ED=24;NLOD=5.46;TLOD=8.33	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:52,3:0.050:1:2:0.333:0|1:8896131_GA_G:1741,94:24:28	0/0:59,5:0.077:2:3:0.400:0|1:8896131_GA_G:2001,160:35:24
chr19	8896146	.	T	A	.	alt_allele_in_normal;clustered_events	ECNT=14;HCNT=7;MAX_ED=125;MIN_ED=24;NLOD=5.46;TLOD=8.42	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:51,3:0.054:1:2:0.333:0|1:8896131_GA_G:1702,99:23:28	0/0:57,5:0.077:2:3:0.400:0|1:8896131_GA_G:1913,167:34:23
chr19	8896153	.	T	C	.	alt_allele_in_normal;clustered_events	ECNT=14;HCNT=7;MAX_ED=125;MIN_ED=24;NLOD=3.36;TLOD=8.63	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:39,3:0.063:1:2:0.333:0|1:8896131_GA_G:1222,82:20:19	0/0:52,5:0.086:2:3:0.400:0|1:8896131_GA_G:1596,141:31:21
chr19	8896154	.	A	G	.	alt_allele_in_normal;clustered_events	ECNT=14;HCNT=7;MAX_ED=125;MIN_ED=24;NLOD=3.66;TLOD=8.68	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:37,3:0.065:1:2:0.667:0|1:8896131_GA_G:1235,102:19:18	0/0:46,5:0.085:2:3:0.600:0|1:8896131_GA_G:1518,171:28:18
chr19	8897134	.	G	A	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=5;HCNT=8;MAX_ED=22;MIN_ED=10;NLOD=16.30;TLOD=4.80	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:106,2:0.021:2:0:1.00:0|1:8897134_G_A:3733,64:48:58	0/0:108,3:0.030:0:3:0.00:0|1:8897134_G_A:3804,64:55:53
chr19	8897144	.	A	G	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=5;HCNT=8;MAX_ED=22;MIN_ED=10;NLOD=17.20;TLOD=4.80	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:107,2:0.021:2:0:0.00:0|1:8897134_G_A:3510,68:53:54	0/0:106,3:0.029:0:3:1.00:0|1:8897134_G_A:3487,102:55:51
chr19	8897147	.	C	A	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=5;HCNT=8;MAX_ED=22;MIN_ED=10;NLOD=16.00;TLOD=4.79	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:108,2:0.021:2:0:0.00:0|1:8897134_G_A:3664,64:54:54	0/0:103,3:0.031:0:3:1.00:0|1:8897134_G_A:3517,97:54:49
chr19	8897153	.	C	T	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=5;HCNT=8;MAX_ED=22;MIN_ED=10;NLOD=16.00;TLOD=4.78	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:104,2:0.021:2:0:0.00:0|1:8897134_G_A:3612,69:52:52	0/0:97,3:0.031:0:3:1.00:0|1:8897134_G_A:3372,97:52:45
chr19	8897156	.	C	T	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=5;HCNT=8;MAX_ED=22;MIN_ED=10;NLOD=14.80;TLOD=4.83	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:101,2:0.022:2:0:0.00:0|1:8897134_G_A:3075,64:50:51	0/0:93,3:0.032:0:3:1.00:0|1:8897134_G_A:2793,93:51:42
chr19	8897717	.	T	C	.	alt_allele_in_normal;clustered_events	ECNT=4;HCNT=1;MAX_ED=36;MIN_ED=1;NLOD=7.86;TLOD=11.24	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:69,4:0.054:2:2:0.500:0|1:8897717_T_C:2208,146:43:26	0/0:53,3:0.053:2:1:0.667:0|1:8897717_T_C:1694,111:29:24
chr19	8897718	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=4;HCNT=1;MAX_ED=36;MIN_ED=1;NLOD=7.86;TLOD=11.24	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:69,4:0.054:2:2:0.500:0|1:8897717_T_C:2257,135:43:26	0/0:53,3:0.053:2:1:0.667:0|1:8897717_T_C:1797,101:29:24
chr19	8897752	.	A	AG	.	alt_allele_in_normal;clustered_events;germline_risk	ECNT=4;HCNT=1;MAX_ED=36;MIN_ED=1;NLOD=1.54;TLOD=19.33	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:34,6:0.133:3:3:.:0|1:8897717_T_C:1126,200:18:16	0/0:30,2:0.057:2:0:.:0|1:8897717_T_C:985,66:16:14
chr19	8897753	.	ACC	A	.	alt_allele_in_normal;clustered_events;germline_risk	ECNT=4;HCNT=1;MAX_ED=36;MIN_ED=1;NLOD=1.23;TLOD=19.52	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:35,6:0.143:3:3:.:0|1:8897717_T_C:1085,201:18:17	0/0:29,2:0.059:2:0:.:0|1:8897717_T_C:889,69:16:13
chr19	8900009	.	C	T	.	alt_allele_in_normal;clustered_events;germline_risk;t_lod_fstar	ECNT=4;HCNT=4;MAX_ED=9;MIN_ED=3;NLOD=0.648;TLOD=5.18	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:63,2:0.033:0:2:1.00:0|1:8900009_C_T:2179,51:39:24	0/0:52,4:0.064:4:0:0.00:0|1:8900009_C_T:1792,129:35:17
chr19	8900012	.	A	T	.	alt_allele_in_normal;clustered_events;germline_risk	ECNT=4;HCNT=4;MAX_ED=9;MIN_ED=3;NLOD=1.25;TLOD=8.28	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:61,3:0.048:0:3:1.00:0|1:8900009_C_T:1994,83:38:23	0/0:53,4:0.061:4:0:0.00:0|1:8900009_C_T:1737,131:36:17
chr19	8900017	.	C	G	.	alt_allele_in_normal;clustered_events;germline_risk	ECNT=4;HCNT=4;MAX_ED=9;MIN_ED=3;NLOD=1.55;TLOD=13.64	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:61,4:0.085:0:4:1.00:0|1:8900009_C_T:2113,122:37:24	0/0:56,4:0.060:4:0:0.00:0|1:8900009_C_T:1922,141:36:20
chr19	8900018	.	C	T	.	alt_allele_in_normal;clustered_events;germline_risk	ECNT=4;HCNT=4;MAX_ED=9;MIN_ED=3;NLOD=1.55;TLOD=13.68	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:61,5:0.086:1:4:0.800:0|1:8900009_C_T:2126,141:37:24	0/0:56,4:0.060:4:0:0.00:0|1:8900009_C_T:1922,124:36:20
chr19	8902324	.	A	T	.	PASS	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=11.45;TLOD=8.66	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:41,3:0.064:0:3:1.00:1356,86:22:19	0/0:51,1:0.037:1:0:0.00:1708,20:21:30
chr19	8907563	.	GGT	G	.	alt_allele_in_normal;str_contraction	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=11.93;RPA=6,5;RU=GT;STR;TLOD=7.61	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:106,4:0.037:4:0:.:3572,135:68:38	0/0:90,4:0.044:2:2:.:3077,128:44:46
chr19	8907765	.	G	C	.	alt_allele_in_normal;clustered_events	ECNT=3;HCNT=15;MAX_ED=17;MIN_ED=1;NLOD=43.24;TLOD=6.69	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:234,3:0.015:1:2:0.333:0|1:8907765_G_C:8114,99:118:116	0/0:203,3:0.016:2:1:0.667:0|1:8907765_G_C:6967,103:106:97
chr19	8907766	.	T	C	.	alt_allele_in_normal;clustered_events	ECNT=3;HCNT=15;MAX_ED=17;MIN_ED=1;NLOD=43.24;TLOD=6.69	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:232,3:0.015:1:2:0.333:0|1:8907765_G_C:7225,100:118:114	0/0:202,3:0.016:2:1:0.667:0|1:8907765_G_C:6269,99:106:96
chr19	8907782	.	A	T	.	alt_allele_in_normal;clustered_events	ECNT=3;HCNT=19;MAX_ED=17;MIN_ED=1;NLOD=3.00;TLOD=38.04	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:237,14:0.059:7:7:0.500:7710,445:115:122	0/0:190,11:0.067:5:6:0.545:6140,358:98:92
chr19	8908637	.	C	G	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=3;HCNT=2;MAX_ED=7;MIN_ED=2;NLOD=6.05;TLOD=5.27	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:55,2:0.036:2:0:0.00:0|1:8908637_C_G:1899,68:33:22	0/0:53,2:0.040:0:2:1.00:0|1:8908637_C_G:1830,72:32:21
chr19	8908639	.	A	C	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=3;HCNT=2;MAX_ED=7;MIN_ED=2;NLOD=5.15;TLOD=5.16	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:52,2:0.020:2:0:.:0|1:8908637_C_G:1709,75:29:23	0/0:53,2:0.022:0:2:.:0|1:8908637_C_G:1704,71:33:20
chr19	8908644	.	C	G	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=3;HCNT=2;MAX_ED=7;MIN_ED=2;NLOD=4.24;TLOD=5.23	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:52,2:0.021:2:0:0.00:0|1:8908637_C_G:1746,70:30:22	0/0:50,2:0.023:0:2:1.00:0|1:8908637_C_G:1733,70:29:21
chr19	8910135	.	T	A	.	alt_allele_in_normal;clustered_events	ECNT=9;HCNT=15;MAX_ED=50;MIN_ED=18;NLOD=5.96;TLOD=52.96	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:213,34:0.116:17:17:0.500:6689,1112:112:101	0/0:195,20:0.071:14:6:0.700:6059,662:86:109
chr19	8910153	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=9;HCNT=15;MAX_ED=50;MIN_ED=18;NLOD=10.01;TLOD=63.99	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:198,28:0.116:14:14:0.500:0|1:8910153_C_T:6867,865:99:99	0/0:185,10:0.056:7:3:0.300:0|1:8910153_C_T:6499,314:83:102
chr19	8910163	.	A	G	.	alt_allele_in_normal;clustered_events	ECNT=9;HCNT=15;MAX_ED=50;MIN_ED=18;NLOD=11.58;TLOD=53.74	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:183,17:0.095:9:8:0.471:0|1:8910153_C_T:6055,552:89:94	0/0:169,9:0.052:7:2:0.222:0|1:8910153_C_T:5588,303:72:97
chr19	8910168	.	C	G	.	alt_allele_in_normal;clustered_events	ECNT=9;HCNT=15;MAX_ED=50;MIN_ED=18;NLOD=13.07;TLOD=45.08	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:169,14:0.083:8:6:0.429:0|1:8910153_C_T:4956,455:81:88	0/0:157,6:0.049:5:1:0.167:0|1:8910153_C_T:4666,203:69:88
chr19	8910174	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=9;HCNT=15;MAX_ED=50;MIN_ED=18;NLOD=19.36;TLOD=25.41	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:158,8:0.056:5:3:0.625:0|1:8910153_C_T:5503,257:75:83	0/0:155,6:0.039:5:1:0.833:0|1:8910153_C_T:5396,197:67:88
chr19	8910175	.	A	G	.	alt_allele_in_normal;clustered_events	ECNT=9;HCNT=15;MAX_ED=50;MIN_ED=18;NLOD=20.26;TLOD=25.41	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:159,8:0.056:5:3:0.375:0|1:8910153_C_T:5188,264:76:83	0/0:155,6:0.038:5:1:0.167:0|1:8910153_C_T:5109,209:68:87
chr19	8910177	.	A	G	.	alt_allele_in_normal;clustered_events	ECNT=9;HCNT=15;MAX_ED=50;MIN_ED=18;NLOD=20.86;TLOD=22.21	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:153,8:0.050:5:3:0.375:0|1:8910153_C_T:5096,237:74:79	0/0:151,6:0.038:5:1:0.167:0|1:8910153_C_T:4982,192:65:86
chr19	8910180	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=9;HCNT=15;MAX_ED=50;MIN_ED=18;NLOD=24.46;TLOD=22.41	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:148,7:0.053:4:3:0.571:0|1:8910153_C_T:5087,217:69:79	0/0:148,4:0.032:4:0:1.00:0|1:8910153_C_T:5144,125:65:83
chr19	8910185	.	G	T	.	alt_allele_in_normal;clustered_events	ECNT=9;HCNT=15;MAX_ED=50;MIN_ED=18;NLOD=32.24;TLOD=13.15	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:140,3:0.036:1:2:0.333:0|1:8910153_C_T:4664,89:64:76	0/0:132,2:0.015:2:0:1.00:0|1:8910153_C_T:4505,65:55:77
chr19	8910399	.	T	C	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=7;HCNT=1;MAX_ED=53;MIN_ED=6;NLOD=43.66;TLOD=4.14	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:208,1:0.010:1:0:1.00:0|1:8910399_T_C:6904,33:106:102	0/0:172,2:0.012:2:0:1.00:0|1:8910399_T_C:5615,60:99:73
chr19	8910405	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=7;HCNT=1;MAX_ED=53;MIN_ED=6;NLOD=47.28;TLOD=6.69	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:213,3:0.014:3:0:1.00:0|1:8910399_T_C:7294,94:111:102	0/0:178,3:0.017:2:1:0.667:0|1:8910399_T_C:6123,97:104:74
chr19	8910429	.	A	T	.	alt_allele_in_normal;clustered_events	ECNT=7;HCNT=1;MAX_ED=53;MIN_ED=6;NLOD=34.69;TLOD=6.59	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:215,3:0.013:3:0:0.00:0|1:8910399_T_C:6765,94:119:96	0/0:198,7:0.036:4:3:0.429:0|1:8910399_T_C:6283,220:113:85
chr19	8910431	.	C	G	.	alt_allele_in_normal;clustered_events	ECNT=7;HCNT=1;MAX_ED=53;MIN_ED=6;NLOD=34.69;TLOD=6.66	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:218,3:0.014:3:0:0.00:0|1:8910399_T_C:7385,95:119:99	0/0:199,7:0.036:4:3:0.429:0|1:8910399_T_C:6821,236:113:86
chr19	8910436	.	T	G	.	alt_allele_in_normal;clustered_events	ECNT=7;HCNT=1;MAX_ED=53;MIN_ED=6;NLOD=37.10;TLOD=6.58	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:230,3:0.013:3:0:1.00:0|1:8910399_T_C:7240,103:127:103	0/0:200,7:0.035:4:3:0.571:0|1:8910399_T_C:6440,232:110:90
chr19	8910442	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=7;HCNT=1;MAX_ED=53;MIN_ED=6;NLOD=36.50;TLOD=6.65	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:221,3:0.014:3:0:0.00:0|1:8910399_T_C:7558,97:119:102	0/0:201,7:0.035:4:3:0.429:0|1:8910399_T_C:6790,223:113:88
chr19	8910452	.	G	A	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=7;HCNT=1;MAX_ED=53;MIN_ED=6;NLOD=33.19;TLOD=4.14	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:216,2:0.010:2:0:1.00:0|1:8910399_T_C:7417,67:117:99	0/0:195,7:0.037:4:3:0.571:0|1:8910399_T_C:6731,230:109:86
chr19	8913794	.	T	TTGGTATG	.	alt_allele_in_normal;clustered_events	ECNT=11;HCNT=8;MAX_ED=63;MIN_ED=2;NLOD=11.17;TLOD=7.79	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:101,1:0.033:1:0:.:0|1:8913794_T_TTGGTATG:3096,35:45:56	0/0:71,2:0.030:1:1:.:0|1:8913794_T_TTGGTATG:2200,64:32:39
chr19	8913796	.	GACACAGA	G	.	alt_allele_in_normal;clustered_events	ECNT=11;HCNT=8;MAX_ED=63;MIN_ED=2;NLOD=13.27;TLOD=7.59	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:113,3:0.029:3:0:.:0|1:8913794_T_TTGGTATG:3922,96:50:63	0/0:78,2:0.027:1:1:.:0|1:8913794_T_TTGGTATG:2698,68:35:43
chr19	8913808	.	T	C	.	alt_allele_in_normal;clustered_events	ECNT=11;HCNT=8;MAX_ED=63;MIN_ED=2;NLOD=7.27;TLOD=7.75	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:102,3:0.032:3:0:1.00:0|1:8913794_T_TTGGTATG:3401,111:45:57	0/0:75,3:0.043:2:1:0.667:0|1:8913794_T_TTGGTATG:2467,105:33:42
chr19	8913809	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=11;HCNT=8;MAX_ED=63;MIN_ED=2;NLOD=8.17;TLOD=7.73	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:102,3:0.032:3:0:1.00:0|1:8913794_T_TTGGTATG:3647,102:45:57	0/0:74,3:0.042:2:1:0.667:0|1:8913794_T_TTGGTATG:2617,102:33:41
chr19	8913813	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=11;HCNT=8;MAX_ED=63;MIN_ED=2;NLOD=6.37;TLOD=7.77	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:103,3:0.033:3:0:1.00:0|1:8913794_T_TTGGTATG:3525,104:44:59	0/0:70,3:0.045:2:1:0.667:0|1:8913794_T_TTGGTATG:2394,101:32:38
chr19	8913826	.	T	G	.	alt_allele_in_normal;clustered_events	ECNT=11;HCNT=20;MAX_ED=63;MIN_ED=2;NLOD=6.37;TLOD=7.83	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:95,3:0.034:3:0:1.00:0|1:8913826_T_G:3043,108:42:53	0/0:66,3:0.045:2:1:0.667:0|1:8913826_T_G:2096,109:32:34
chr19	8913832	.	A	G	.	alt_allele_in_normal;clustered_events	ECNT=11;HCNT=20;MAX_ED=63;MIN_ED=2;NLOD=7.57;TLOD=7.73	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:89,3:0.032:3:0:0.00:0|1:8913826_T_G:2977,101:42:47	0/0:68,3:0.043:2:1:0.333:0|1:8913826_T_G:2284,103:31:37
chr19	8913836	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=11;HCNT=20;MAX_ED=63;MIN_ED=2;NLOD=6.67;TLOD=7.80	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:88,3:0.034:3:0:1.00:0|1:8913826_T_G:3005,102:42:46	0/0:65,3:0.045:2:1:0.667:0|1:8913826_T_G:2243,100:29:36
chr19	8913843	.	G	T	.	alt_allele_in_normal;clustered_events	ECNT=11;HCNT=20;MAX_ED=63;MIN_ED=2;NLOD=6.07;TLOD=7.93	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:82,3:0.037:3:0:1.00:0|1:8913826_T_G:2879,93:41:41	0/0:62,3:0.046:2:1:0.667:0|1:8913826_T_G:2184,94:29:33
chr19	8913856	.	A	T	.	alt_allele_in_normal;clustered_events	ECNT=11;HCNT=20;MAX_ED=63;MIN_ED=2;NLOD=2.71;TLOD=6.90	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:71,3:0.043:3:0:0.00:0|1:8913856_A_T:2232,96:37:34	0/0:52,3:0.056:2:1:0.333:0|1:8913856_A_T:1651,97:26:26
chr19	8913857	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=11;HCNT=20;MAX_ED=63;MIN_ED=2;NLOD=2.45;TLOD=6.90	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:69,2:0.043:2:0:0.00:0|1:8913856_A_T:2454,64:37:32	0/0:53,3:0.057:2:1:0.333:0|1:8913856_A_T:1851,90:26:27
chr19	8914214	.	T	C	.	alt_allele_in_normal;clustered_events	ECNT=3;HCNT=2;MAX_ED=6;MIN_ED=2;NLOD=30.81;TLOD=23.70	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:252,8:0.036:4:4:0.500:0|1:8914214_T_C:8259,260:131:121	0/0:205,5:0.034:5:0:1.00:0|1:8914214_T_C:6739,166:103:102
chr19	8914216	.	T	G	.	alt_allele_in_normal;clustered_events	ECNT=3;HCNT=2;MAX_ED=6;MIN_ED=2;NLOD=38.26;TLOD=20.67	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:250,6:0.032:4:2:0.667:0|1:8914214_T_C:8163,213:130:120	0/0:201,4:0.025:4:0:1.00:0|1:8914214_T_C:6631,126:100:101
chr19	8914220	.	T	C	.	clustered_events;multi_event_alt_allele_in_normal	ECNT=3;HCNT=2;MAX_ED=6;MIN_ED=2;NLOD=43.65;TLOD=6.52	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:247,3:0.013:2:1:0.667:0|1:8914214_T_C:7831,101:128:119	0/0:194,1:0.016:1:0:1.00:0|1:8914214_T_C:6209,37:101:93
chr19	8915478	.	CATGAG	C	.	alt_allele_in_normal;clustered_events	ECNT=4;HCNT=4;MAX_ED=19;MIN_ED=11;NLOD=2.67;TLOD=6.37	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:274,3:0.011:2:1:.:0|1:8915478_CATGAG_C:9482,109:152:122	0/0:245,17:0.065:11:6:.:0|1:8915478_CATGAG_C:8594,613:143:102
chr19	8915489	.	C	CGGGGG	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=4;HCNT=4;MAX_ED=19;MIN_ED=11;NLOD=5.68;TLOD=6.26	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:294,3:0.010:2:1:.:0|1:8915478_CATGAG_C:10139,105:162:132	0/0:256,17:0.062:11:6:.:0|1:8915478_CATGAG_C:8804,593:144:112
chr19	8915496	.	T	A	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=4;HCNT=4;MAX_ED=19;MIN_ED=11;NLOD=4.47;TLOD=6.21	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:329,3:0.010:2:1:0.667:0|1:8915478_CATGAG_C:10236,96:181:148	0/0:273,17:0.063:11:6:0.647:0|1:8915478_CATGAG_C:8403,539:155:118
chr19	8915497	.	G	A	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=4;HCNT=4;MAX_ED=19;MIN_ED=11;NLOD=4.16;TLOD=6.19	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:332,3:9.901e-03:2:1:0.667:0|1:8915478_CATGAG_C:11475,104:182:150	0/0:277,17:0.063:11:6:0.647:0|1:8915478_CATGAG_C:9647,569:157:120
chr19	8915654	.	T	G	.	alt_allele_in_normal;germline_risk;t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.06;TLOD=4.39	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:152,2:0.013:2:0:1.00:4839,66:76:76	0/0:142,11:0.071:8:3:0.727:4515,371:85:57
chr19	8922818	.	A	G	.	clustered_events;multi_event_alt_allele_in_normal;t_lod_fstar	ECNT=2;HCNT=2;MAX_ED=5;MIN_ED=5;NLOD=3.85;TLOD=5.83	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:13,3:0.188:2:1:0.333:0|1:8922818_A_G:350,35:11:2	0/0:17,1:0.050:1:0:0.00:0|1:8922818_A_G:452,12:11:6
chr19	8922823	.	T	G	.	clustered_events;multi_event_alt_allele_in_normal;t_lod_fstar	ECNT=2;HCNT=2;MAX_ED=5;MIN_ED=5;NLOD=3.25;TLOD=5.74	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:14,3:0.176:2:1:0.667:0|1:8922818_A_G:308,26:12:2	0/0:17,1:0.056:1:0:1.00:0|1:8922818_A_G:360,5:11:6
chr19	10109988	.	C	T	.	t_lod_fstar	ECNT=1;HCNT=8;MAX_ED=.;MIN_ED=.;NLOD=40.19;TLOD=4.80	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:170,3:0.019:0:3:1.00:5764,98:85:85	0/0:146,0:0.00:0:0:.:4897,0:67:79
chr19	10166700	.	AAC	A	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=13.82;RPA=5,4;RU=AC;STR;TLOD=4.07	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:47,2:0.042:2:0:.:1510,66:27:20	0/0:50,0:0.00:0:0:.:1611,0:27:23
chr19	10927685	.	GGCT	G	.	str_contraction	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=16.79;RPA=7,6;RU=GCT;STR;TLOD=7.57	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:84,3:0.038:2:1:.:2553,81:41:43	0/0:62,0:0.00:0:0:.:1878,0:25:37
chr19	10987790	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.11;TLOD=4.40	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:22,2:0.087:2:0:1.00:643,64:8:14	0/0:17,0:0.00:0:0:.:485,0:7:10
chr19	11513024	.	T	G	.	alt_allele_in_normal;t_lod_fstar	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=2.21;TLOD=4.30	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:35,15:0.262:6:9:0.400:905,137:17:18	0/0:44,12:0.231:8:4:0.667:1170,53:24:20
chr19	12924419	.	T	C	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=18.96;TLOD=5.23	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:70,3:0.042:1:2:0.333:2280,92:40:30	0/0:63,0:0.00:0:0:.:2030,0:38:25
chr19	12954458	.	CGCT	C	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=27.29;RPA=4,3;RU=GCT;STR;TLOD=5.04	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:81,2:0.028:2:0:.:2512,59:44:37	0/0:96,0:0.00:0:0:.:2961,0:48:48
chr19	13286862	.	A	G	.	PASS	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=15.95;TLOD=9.31	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:46,4:0.087:2:2:0.500:1497,133:28:18	0/0:57,0:0.00:0:0:.:1877,0:29:28
chr19	13762317	.	CAGG	C	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=40.83;RPA=4,3;RU=AGG;STR;TLOD=4.39	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:180,2:0.013:1:1:.:6205,71:84:96	0/0:164,0:0.00:0:0:.:5742,0:71:93
chr19	14032575	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=13.24;TLOD=4.01	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:48,2:0.040:0:2:0.00:1688,67:30:18	0/0:44,0:0.00:0:0:.:1537,0:22:22
chr19	14388802	.	G	C	.	alt_allele_in_normal;t_lod_fstar	ECNT=2;HCNT=1;MAX_ED=2;MIN_ED=2;NLOD=65.07;TLOD=4.54	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:341,3:9.772e-03:1:2:0.333:0|1:14388802_G_C:10509,102:179:162	0/0:340,7:0.022:1:6:0.143:0|1:14388802_G_C:10634,250:178:162
chr19	14388804	.	C	T	.	alt_allele_in_normal;t_lod_fstar	ECNT=2;HCNT=1;MAX_ED=2;MIN_ED=2;NLOD=65.37;TLOD=4.55	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:347,2:9.836e-03:0:2:1.00:0|1:14388802_G_C:10947,65:182:165	0/0:336,7:0.022:1:6:0.857:0|1:14388802_G_C:10378,227:174:162
chr19	14396232	.	G	C	.	alt_allele_in_normal	ECNT=1;HCNT=8;MAX_ED=.;MIN_ED=.;NLOD=5.84;TLOD=7.11	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:33,4:0.108:2:2:0.500:1096,127:18:15	0/0:42,2:0.045:1:1:0.500:1420,66:19:23
chr19	14396416	.	A	C	.	alt_allele_in_normal;t_lod_fstar	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=2.70;TLOD=4.87	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:144,37:0.198:20:17:0.459:3782,199:55:89	0/0:97,27:0.233:22:5:0.185:2646,202:35:62
chr19	14396671	.	C	CT	.	germline_risk;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;RPA=1,2;RU=T;STR;TLOD=6.08	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,2:0.500:1:1:.:72,73:0:2	0/0:5,0:0.00:0:0:.:167,0:1:4
chr19	14450976	.	C	A	.	t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=6.27;TLOD=4.26	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:34,2:0.061:1:1:0.500:1010,66:24:10	0/0:22,0:0.00:0:0:.:616,0:13:9
chr19	14479424	rs3815715	C	T	.	germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=23.21	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:6,9:0.636:6:3:0.333:150,299:2:4	0/0:5,0:0.00:0:0:.:158,0:2:3
chr19	14765881	.	G	A	.	alt_allele_in_normal	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=10.60;TLOD=7.17	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:56,4:0.067:0:4:0.00:1846,127:26:30	0/0:56,2:0.034:1:1:0.500:1860,59:30:26
chr19	14828259	.	CAG	C	.	alt_allele_in_normal;str_contraction	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.36;RPA=7,6;RU=AG;STR;TLOD=6.48	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:45,4:0.093:2:2:.:1594,147:26:19	0/0:42,3:0.071:0:3:.:1539,110:16:26
chr19	14852098	.	A	G	.	alt_allele_in_normal;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=12.07;TLOD=5.39	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:73,3:0.043:2:1:0.333:2334,108:35:38	0/0:57,3:0.036:3:0:0.00:1826,111:35:22
chr19	15117760	.	T	C	.	t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=6.62;TLOD=4.63	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:26,2:0.071:1:1:0.500:865,68:15:11	0/0:22,0:0.00:0:0:.:739,0:14:8
chr19	15244612	.	GAGAC	G	.	alt_allele_in_normal;str_contraction	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=17.65;RPA=4,3;RU=AGAC;STR;TLOD=7.54	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:108,3:0.028:2:1:.:3758,105:50:58	0/0:88,2:0.022:0:2:.:3006,70:42:46
chr19	16529752	.	AGCT	A	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=3;MAX_ED=.;MIN_ED=.;NLOD=8.39;RPA=5,4;RU=GCT;STR;TLOD=5.19	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:34,2:0.057:1:1:.:1091,65:22:12	0/0:43,1:0.024:1:0:.:1369,33:25:18
chr19	18856134	.	C	T	.	t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=18.95;TLOD=5.36	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:68,3:0.043:3:0:0.00:2195,93:38:30	0/0:65,0:0.00:0:0:.:2036,0:25:40
chr19	19878458	.	ATG	A	.	alt_allele_in_normal;str_contraction	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=19.84;RPA=7,6;RU=TG;STR;TLOD=24.22	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:150,18:0.094:7:11:.:4636,515:82:68	0/0:128,5:0.048:3:2:.:4015,138:73:55
chr19	20389635	.	ATG	A	.	alt_allele_in_normal;str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=7.79;RPA=7,6;RU=TG;STR;TLOD=6.03	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:105,5:0.041:1:4:.:3489,151:54:51	0/0:110,7:0.067:4:3:.:3657,234:62:48
chr19	20451231	.	ATGTG	A	.	t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=21.24;RPA=8,6;RU=TG;STR;TLOD=4.58	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:77,2:8.621e-03:2:0:.:2370,68:32:38	0/0:70,0:0.00:0:0:.:2006,0:25:35
chr19	20646412	.	AAC	A	.	alt_allele_in_normal;str_contraction	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=21.82;RPA=7,6;RU=AC;STR;TLOD=14.66	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:184,10:0.054:5:5:.:6228,333:90:94	0/0:161,6:0.043:2:4:.:5494,206:75:86
chr19	21375213	.	ATG	A	.	alt_allele_in_normal;str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=15.82;RPA=8,7;RU=TG;STR;TLOD=5.26	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:104,4:0.033:2:2:.:606,127:13:7	0/0:78,2:0.024:1:1:.:287,67:4:5
chr19	21383017	.	A	C	.	clustered_events;homologous_mapping_event;t_lod_fstar	ECNT=8;HCNT=8;MAX_ED=28;MIN_ED=4;NLOD=13.24;TLOD=5.47	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:50,2:0.045:1:1:0.500:0|1:21383017_A_C:1669,61:22:28	0/0:47,0:0.00:0:0:.:0|1:21383017_A_C:1578,0:23:24
chr19	21383021	.	G	C	.	clustered_events;homologous_mapping_event;t_lod_fstar	ECNT=8;HCNT=8;MAX_ED=28;MIN_ED=4;NLOD=12.64;TLOD=5.51	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:46,2:0.048:1:1:0.500:0|1:21383017_A_C:1639,64:20:26	0/0:44,0:0.00:0:0:.:0|1:21383017_A_C:1561,0:22:22
chr19	21383034	.	A	G	.	clustered_events;homologous_mapping_event;t_lod_fstar	ECNT=8;HCNT=8;MAX_ED=28;MIN_ED=4;NLOD=12.34;TLOD=5.47	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:47,2:0.045:1:1:0.500:0|1:21383034_A_G:1552,70:19:28	0/0:43,0:0.00:0:0:.:0|1:21383034_A_G:1441,0:19:24
chr19	21383038	.	A	T	.	clustered_events;homologous_mapping_event;t_lod_fstar	ECNT=8;HCNT=8;MAX_ED=28;MIN_ED=4;NLOD=12.64;TLOD=5.47	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:47,2:0.045:1:1:0.500:0|1:21383034_A_G:1533,66:17:30	0/0:43,0:0.00:0:0:.:0|1:21383034_A_G:1406,0:19:24
chr19	21383041	.	A	C	.	clustered_events;homologous_mapping_event;t_lod_fstar	ECNT=8;HCNT=8;MAX_ED=28;MIN_ED=4;NLOD=12.64;TLOD=5.45	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:47,2:0.044:1:1:0.500:0|1:21383034_A_G:1574,67:17:30	0/0:43,0:0.00:0:0:.:0|1:21383034_A_G:1446,0:19:24
chr19	21383042	.	G	C	.	clustered_events;homologous_mapping_event;t_lod_fstar	ECNT=8;HCNT=8;MAX_ED=28;MIN_ED=4;NLOD=12.64;TLOD=5.43	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:47,2:0.043:1:1:0.500:0|1:21383034_A_G:1630,68:17:30	0/0:44,0:0.00:0:0:.:0|1:21383034_A_G:1544,0:18:26
chr19	21383044	.	G	A	.	clustered_events;homologous_mapping_event;t_lod_fstar	ECNT=8;HCNT=8;MAX_ED=28;MIN_ED=4;NLOD=12.64;TLOD=5.41	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:47,2:0.043:1:1:0.500:0|1:21383034_A_G:1599,70:18:29	0/0:43,0:0.00:0:0:.:0|1:21383034_A_G:1500,0:18:25
chr19	21383045	.	T	C	.	clustered_events;homologous_mapping_event;t_lod_fstar	ECNT=8;HCNT=8;MAX_ED=28;MIN_ED=4;NLOD=12.64;TLOD=5.43	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:47,2:0.043:1:1:0.500:0|1:21383034_A_G:1439,70:19:28	0/0:44,0:0.00:0:0:.:0|1:21383034_A_G:1333,0:18:26
chr19	21405088	.	ATG	A	.	alt_allele_in_normal;str_contraction;t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=8.18;RPA=10,9;RU=TG;STR;TLOD=5.47	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:62,8:0.114:4:4:.:2069,241:36:26	0/0:67,6:0.081:4:2:.:2235,198:32:35
chr19	21529702	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=9;HCNT=4;MAX_ED=87;MIN_ED=9;NLOD=33.73;TLOD=6.90	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:188,3:0.017:1:2:0.333:0|1:21529702_G_A:6484,104:94:94	0/0:179,4:0.023:3:1:0.750:0|1:21529702_G_A:6165,129:84:95
chr19	21529711	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=9;HCNT=4;MAX_ED=87;MIN_ED=9;NLOD=31.10;TLOD=6.69	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:194,3:0.014:1:2:0.333:0|1:21529702_G_A:6696,104:100:94	0/0:179,6:0.036:3:3:0.500:0|1:21529702_G_A:6178,197:83:96
chr19	21529718	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=9;HCNT=4;MAX_ED=87;MIN_ED=9;NLOD=23.30;TLOD=9.41	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:208,4:0.019:2:2:0.500:0|1:21529702_G_A:7120,130:104:104	0/0:186,9:0.045:4:5:0.444:0|1:21529702_G_A:6413,292:87:99
chr19	21529729	.	A	G	.	alt_allele_in_normal;clustered_events	ECNT=9;HCNT=4;MAX_ED=87;MIN_ED=9;NLOD=19.70;TLOD=9.42	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:211,4:0.019:2:2:0.500:0|1:21529702_G_A:6799,143:111:100	0/0:197,10:0.050:5:5:0.500:0|1:21529702_G_A:6410,359:95:102
chr19	21529735	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=9;HCNT=4;MAX_ED=87;MIN_ED=9;NLOD=17.60;TLOD=12.21	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:208,5:0.023:3:2:0.400:0|1:21529702_G_A:7110,162:112:96	0/0:189,10:0.052:5:5:0.500:0|1:21529702_G_A:6516,330:89:100
chr19	21529759	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=9;HCNT=4;MAX_ED=87;MIN_ED=9;NLOD=23.90;TLOD=6.66	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:235,3:0.014:3:0:1.00:0|1:21529702_G_A:8297,106:117:118	0/0:199,9:0.045:5:4:0.556:0|1:21529702_G_A:6945,313:97:102
chr19	21529772	.	T	C	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=9;HCNT=4;MAX_ED=87;MIN_ED=9;NLOD=29.89;TLOD=4.05	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:251,2:9.050e-03:2:0:1.00:0|1:21529702_G_A:8559,68:127:124	0/0:194,7:0.037:3:4:0.429:0|1:21529702_G_A:6589,245:96:98
chr19	21529783	.	G	A	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=9;HCNT=4;MAX_ED=87;MIN_ED=9;NLOD=34.39;TLOD=4.06	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:247,2:9.174e-03:2:0:1.00:0|1:21529702_G_A:8503,65:129:118	0/0:191,5:0.032:2:3:0.400:0|1:21529702_G_A:6632,160:91:100
chr19	21529789	.	G	GGGT	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=9;HCNT=4;MAX_ED=87;MIN_ED=9;NLOD=36.78;TLOD=4.11	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:224,2:9.662e-03:2:0:.:0|1:21529702_G_A:7910,70:116:108	0/0:182,3:0.022:2:1:.:0|1:21529702_G_A:6413,105:88:94
chr19	21973709	.	T	C	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=23.43;TLOD=4.06	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:82,2:0.027:1:1:0.500:2686,71:44:38	0/0:83,0:0.00:0:0:.:2709,0:49:34
chr19	22088159	.	C	T	.	alt_allele_in_normal;germline_risk	ECNT=1;HCNT=24;MAX_ED=.;MIN_ED=.;NLOD=0.693;TLOD=14.52	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:74,5:0.067:2:3:0.600:2641,171:43:31	0/0:85,6:0.065:2:4:0.667:3017,208:36:49
chr19	22849250	.	G	T	.	alt_allele_in_normal	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=9.12;TLOD=32.69	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:152,11:0.077:5:6:0.455:5303,348:76:76	0/0:129,6:0.058:1:5:0.167:4509,201:69:60
chr19	31279315	.	AGCT	A	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=10.79;RPA=5,4;RU=GCT;STR;TLOD=4.54	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:29,2:0.071:2:0:.:942,66:15:14	0/0:36,0:0.00:0:0:.:1118,0:22:14
chr19	32999523	.	G	T	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=2;HCNT=16;MAX_ED=16;MIN_ED=16;NLOD=4.10;TLOD=5.15	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:38,3:0.079:1:2:0.333:1281,90:22:16	0/0:27,1:0.038:1:0:1.00:886,32:13:14
chr19	32999539	.	G	A	.	alt_allele_in_normal;clustered_events;germline_risk	ECNT=2;HCNT=11;MAX_ED=16;MIN_ED=16;NLOD=1.88;TLOD=6.44	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:52,4:0.075:1:3:0.250:1811,131:31:21	0/0:35,2:0.063:2:0:1.00:1205,68:19:16
chr19	33026478	.	T	C	.	alt_allele_in_normal;t_lod_fstar	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=33.25;TLOD=5.17	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:194,5:0.030:3:2:0.600:6475,177:109:85	0/0:183,4:0.024:3:1:0.750:6172,142:106:77
chr19	33110002	.	A	G	.	t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=25.88;TLOD=4.03	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:89,3:0.026:1:2:0.667:2972,107:37:52	0/0:94,0:0.00:0:0:.:3105,0:37:57
chr19	35123349	.	GGT	G	.	alt_allele_in_normal;str_contraction	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=8.92;RPA=9,8;RU=GT;STR;TLOD=7.98	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:69,6:0.050:2:4:.:1311,207:25:14	0/0:48,2:0.027:1:1:.:733,60:9:12
chr19	35282616	.	GCTC	G	.	alt_allele_in_normal;str_contraction;t_lod_fstar	ECNT=1;HCNT=8;MAX_ED=.;MIN_ED=.;NLOD=41.15;RPA=5,4;RU=CTC;STR;TLOD=4.14	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:239,2:9.950e-03:1:1:.:8217,67:115:124	0/0:202,3:0.016:1:2:.:6996,100:90:112
chr19	35295493	.	C	T	.	t_lod_fstar	ECNT=1;HCNT=24;MAX_ED=.;MIN_ED=.;NLOD=55.17;TLOD=4.16	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:204,3:0.015:1:2:0.667:6739,95:112:92	0/0:198,1:5.102e-03:0:1:1.00:6641,32:108:90
chr19	36092763	.	GGCA	G	.	alt_allele_in_normal;str_contraction	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=38.35;RPA=5,4;RU=GCA;STR;TLOD=9.84	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:184,4:0.024:3:1:.:5674,125:104:80	0/0:179,2:0.013:0:2:.:5561,56:83:96
chr19	37055838	rs77772684	C	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=19.82	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,7:0.600:7:0:0.00:141,230:1:3	0/0:5,0:0.00:0:0:.:156,0:2:3
chr19	38304768	.	T	G	.	alt_allele_in_normal;germline_risk	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=0.732;TLOD=9.65	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:77,43:0.333:27:16:0.628:2150,286:40:37	0/0:77,29:0.293:15:14:0.517:2168,122:40:37
chr19	38457936	.	C	G	.	PASS	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=7.52;TLOD=8.45	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:20,3:0.130:2:1:0.333:684,109:8:12	0/0:25,0:0.00:0:0:.:878,0:16:9
chr19	38575802	.	CA	C	.	alt_allele_in_normal;t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=3.73;RPA=9,8;RU=A;STR;TLOD=4.22	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:10,4:0.286:2:2:.:345,140:1:9	0/0:19,1:0.050:1:0:.:648,36:11:8
chr19	39100517	.	T	G	.	alt_allele_in_normal;germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.21;TLOD=7.55	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:57,27:0.317:19:8:0.704:1622,137:35:22	0/0:46,18:0.281:9:9:0.500:1314,70:25:21
chr19	39176881	.	T	G	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.07;TLOD=5.63	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,2:0.333:1:1:0.500:132,67:2:2	0/0:15,0:0.00:0:0:.:507,0:10:5
chr19	39336057	.	C	T	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.27;TLOD=4.94	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:20,2:0.091:1:1:0.500:715,69:11:9	0/0:22,0:0.00:0:0:.:733,0:14:8
chr19	39878057	.	G	A	.	alt_allele_in_normal	ECNT=1;HCNT=16;MAX_ED=.;MIN_ED=.;NLOD=21.31;TLOD=42.48	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:495,26:0.055:12:14:0.462:14556,840:253:242	0/0:575,54:0.090:29:25:0.537:17126,1709:306:269
chr19	39885955	.	C	G	.	alt_allele_in_normal	ECNT=1;HCNT=18;MAX_ED=.;MIN_ED=.;NLOD=3.67;TLOD=11.47	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:86,7:0.075:4:3:0.429:2911,250:43:43	0/0:133,9:0.064:1:8:0.889:4576,311:66:67
chr19	39886306	.	G	A	.	alt_allele_in_normal	ECNT=1;HCNT=23;MAX_ED=.;MIN_ED=.;NLOD=30.33;TLOD=20.42	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:132,12:0.077:7:5:0.583:4444,368:68:64	0/0:172,9:0.051:4:5:0.444:5572,272:80:92
chr19	39886394	.	G	A	.	alt_allele_in_normal	ECNT=1;HCNT=6;MAX_ED=.;MIN_ED=.;NLOD=59.48;TLOD=7.64	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:316,5:0.018:2:3:0.400:9607,161:154:162	0/0:300,7:0.026:3:4:0.429:9266,224:125:175
chr19	39886558	.	C	G	.	alt_allele_in_normal;germline_risk	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=0.601;TLOD=14.36	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:31,7:0.184:2:5:0.714:883,238:10:21	0/0:52,3:0.055:3:0:0.00:1439,103:28:24
chr19	39894352	.	C	G	.	alt_allele_in_normal	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=62.30;TLOD=7.17	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:261,4:0.016:1:3:0.750:7998,141:136:125	0/0:271,8:0.030:4:4:0.500:7695,114:127:144
chr19	40074826	.	C	T	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=38.21;TLOD=4.89	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:154,3:0.021:1:2:0.667:4707,98:85:69	0/0:136,0:0.00:0:0:.:4101,0:64:72
chr19	40212723	.	C	A	.	germline_risk;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=4.93	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:13,2:0.154:1:1:0.500:448,64:8:5	0/0:4,0:0.00:0:0:.:132,0:2:2
chr19	40389931	.	C	T	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.02;TLOD=4.01	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:21,2:0.087:2:0:0.00:720,60:10:11	0/0:21,0:0.00:0:0:.:714,0:10:11
chr19	40394272	.	TTCC	T	.	alt_allele_in_normal;germline_risk;str_contraction;t_lod_fstar	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=1.02;RPA=7,6;RU=TCC;STR;TLOD=5.56	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:28,2:0.074:2:0:.:907,70:17:11	0/0:18,1:0.056:1:0:.:597,34:11:7
chr19	40423501	.	TCTC	T	.	alt_allele_in_normal;str_contraction	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=9.86;RPA=5,4;RU=CTC;STR;TLOD=6.91	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:113,4:0.033:0:4:.:3656,131:56:57	0/0:71,2:0.032:1:1:.:2296,65:46:25
chr19	41206254	.	CCT	C	.	alt_allele_in_normal;str_contraction;triallelic_site	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=5.00;RPA=8,7;RU=CT;STR;TLOD=22.28	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:53,13:0.110:6:5:.:1739,364:35:18	0/0:70,7:0.043:2:4:.:2274,209:35:35
chr19	41683910	.	A	G	.	t_lod_fstar	ECNT=1;HCNT=16;MAX_ED=.;MIN_ED=.;NLOD=56.58;TLOD=4.69	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:234,3:0.014:3:0:0.00:7655,101:124:110	0/0:198,0:0.00:0:0:.:6514,0:109:89
chr19	41837784	.	G	A	.	germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=6.35	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,2:0.500:2:0:1.00:64,66:1:1	0/0:5,0:0.00:0:0:.:139,0:4:1
chr19	41904241	.	CCTG	C	.	str_contraction	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=17.65;RPA=4,3;RU=CTG;STR;TLOD=8.55	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:53,4:0.059:1:3:.:1785,133:24:29	0/0:63,0:0.00:0:0:.:2057,0:33:30
chr19	41967687	.	C	G	.	t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=13.85;TLOD=4.13	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:93,1:0.025:1:0:0.00:2955,17:47:46	0/0:50,0:0.00:0:0:.:1635,0:28:22
chr19	42122057	.	G	T	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=8.68;TLOD=4.18	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:36,2:0.054:1:1:0.500:1253,66:23:13	0/0:29,0:0.00:0:0:.:985,0:18:11
chr19	42376076	.	CCTG	C	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=28.48;RPA=4,3;RU=CTG;STR;TLOD=4.48	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:152,3:0.015:1:2:.:5211,106:85:67	0/0:107,0:0.00:0:0:.:3679,0:57:50
chr19	42560895	.	GGAGA	G	.	PASS	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.20;RPA=10,8;RU=GA;STR;TLOD=10.22	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:7,3:0.188:2:1:.:206,101:4:2	0/0:14,0:0.00:0:0:.:450,0:7:6
chr19	42632101	.	GGA	G	.	alt_allele_in_normal;str_contraction;t_lod_fstar	ECNT=1;HCNT=8;MAX_ED=.;MIN_ED=.;NLOD=15.46;RPA=7,6;RU=GA;STR;TLOD=5.90	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:103,5:0.043:3:2:.:3541,170:60:43	0/0:108,5:0.041:3:2:.:3738,173:59:49
chr19	42729995	.	G	T	.	alt_allele_in_normal;t_lod_fstar	ECNT=1;HCNT=6;MAX_ED=.;MIN_ED=.;NLOD=80.18;TLOD=4.70	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:416,7:0.018:2:5:0.286:14650,217:246:170	0/0:462,29:0.059:20:9:0.690:16269,855:271:191
chr19	42740333	rs11880551	G	C	.	alt_allele_in_normal;t_lod_fstar	DB;ECNT=1;HCNT=8;MAX_ED=.;MIN_ED=.;NLOD=30.49;TLOD=5.29	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:167,3:0.019:3:0:1.00:5888,106:101:66	0/0:200,6:0.031:2:4:0.333:6915,209:104:96
chr19	43081182	.	T	G	.	alt_allele_in_normal	ECNT=1;HCNT=3;MAX_ED=.;MIN_ED=.;NLOD=9.67;TLOD=28.97	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:309,21:0.058:15:6:0.714:10066,730:185:124	0/0:276,31:0.076:18:13:0.581:9113,1074:155:121
chr19	43176006	.	G	C	.	alt_allele_in_normal	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=30.78;TLOD=12.45	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:252,13:0.049:6:7:0.462:8646,375:150:102	0/0:493,59:0.104:32:27:0.542:17336,1846:264:229
chr19	43193330	.	T	C	.	alt_allele_in_normal	ECNT=1;HCNT=8;MAX_ED=.;MIN_ED=.;NLOD=8.50;TLOD=9.72	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:131,9:0.057:5:4:0.556:4182,303:73:58	0/0:149,17:0.103:10:7:0.588:4712,565:88:61
chr19	43276366	.	A	C	.	alt_allele_in_normal	ECNT=2;HCNT=24;MAX_ED=2;MIN_ED=2;NLOD=8.07;TLOD=8.76	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:140,4:0.040:3:1:0.250:4442,129:71:69	0/0:128,9:0.082:3:6:0.667:4123,295:63:65
chr19	43276368	.	T	C	.	alt_allele_in_normal;t_lod_fstar	ECNT=2;HCNT=12;MAX_ED=2;MIN_ED=2;NLOD=28.69;TLOD=4.49	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:144,3:0.024:2:1:0.667:4517,101:74:70	0/0:137,4:0.031:3:1:0.750:4347,132:67:70
chr19	43303444	.	ACTC	A	.	alt_allele_in_normal;str_contraction;t_lod_fstar	ECNT=1;HCNT=3;MAX_ED=.;MIN_ED=.;NLOD=5.47;RPA=6,5;RU=CTC;STR;TLOD=5.68	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:33,2:0.057:0:2:.:1077,69:19:14	0/0:43,2:0.044:0:2:.:1429,66:25:18
chr19	43355849	.	G	T	.	alt_allele_in_normal	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=6.95;TLOD=10.40	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:58,6:0.100:5:1:0.833:1967,186:27:31	0/0:61,4:0.066:2:2:0.500:2050,129:36:25
chr19	43465500	.	AAGC	A	.	str_contraction	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=32.62;RPA=6,5;RU=AGC;STR;TLOD=9.23	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:168,4:0.028:0:4:.:5471,132:84:84	0/0:145,1:8.065e-03:1:0:.:4696,34:75:70
chr19	43627652	.	C	T	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=35.81;TLOD=4.63	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:137,4:0.023:1:3:0.750:4555,124:65:72	0/0:122,0:0.00:0:0:.:4141,0:64:58
chr19	43670082	.	GAGC	G	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=16;MAX_ED=.;MIN_ED=.;NLOD=37.25;RPA=5,4;RU=AGC;STR;TLOD=4.36	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:159,2:0.013:1:1:.:5525,69:65:94	0/0:139,1:7.194e-03:1:0:.:4892,36:68:71
chr19	43846955	rs10421861	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=15.38	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:7,5:0.500:3:2:0.600:207,160:6:1	0/0:5,0:0.00:0:0:.:156,0:4:1
chr19	44818714	.	GTCC	G	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=38.14;RPA=4,3;RU=TCC;STR;TLOD=4.43	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:158,2:0.014:1:1:.:4629,56:86:72	0/0:137,0:0.00:0:0:.:4025,0:63:74
chr19	44819003	.	TTC	T	.	alt_allele_in_normal;str_contraction	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=37.39;RPA=7,6;RU=TC;STR;TLOD=27.62	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:299,17:0.056:8:9:.:9843,555:166:133	0/0:233,11:0.037:1:10:.:7658,372:109:124
chr19	45070304	.	TAC	T	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.79;RPA=8,7;RU=AC;STR;TLOD=5.59	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:20,3:0.130:2:1:.:594,94:6:14	0/0:16,0:0.00:0:0:.:493,0:7:9
chr19	45409231	.	CAAGAAG	C	.	PASS	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.79;RPA=6,4;RU=AAG;STR;TLOD=8.81	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:35,3:0.046:2:1:.:1008,109:15:14	0/0:24,1:0.023:1:0:.:643,34:8:10
chr19	45691793	.	G	GCC	.	alt_allele_in_normal;t_lod_fstar	ECNT=1;HCNT=3;MAX_ED=.;MIN_ED=.;NLOD=27.76;RPA=8,10;RU=C;STR;TLOD=4.02	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:140,13:0.060:7:3:.:4840,319:69:70	0/0:134,5:0.033:1:0:.:4621,27:48:86
chr19	45795888	.	CCCT	C	.	alt_allele_in_normal;clustered_events;str_contraction	ECNT=2;HCNT=6;MAX_ED=18;MIN_ED=18;NLOD=5.73;RPA=5,4;RU=CCT;STR;TLOD=23.09	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:175,9:0.052:6:3:.:5785,291:93:82	0/0:160,10:0.061:5:5:.:5367,335:92:68
chr19	45795906	.	CCCT	C	.	alt_allele_in_normal;clustered_events;str_contraction	ECNT=2;HCNT=6;MAX_ED=18;MIN_ED=18;NLOD=29.35;RPA=5,4;RU=CCT;STR;TLOD=12.46	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:191,5:0.026:4:1:.:6330,170:113:78	0/0:184,6:0.032:2:4:.:6234,205:112:72
chr19	45960967	rs35514609	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=18.63	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:0,6:1.00:4:2:0.667:0,159:0:0	0/0:5,0:0.00:0:0:.:175,0:3:2
chr19	47379900	.	TGGA	T	.	str_contraction	ECNT=1;HCNT=6;MAX_ED=.;MIN_ED=.;NLOD=16.21;RPA=6,5;RU=GGA;STR;TLOD=8.17	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:71,3:0.044:3:0:.:2336,100:44:27	0/0:71,1:0.014:0:1:.:2329,28:33:38
chr19	47432423	.	GTCC	G	.	str_contraction	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=25.75;RPA=5,4;RU=TCC;STR;TLOD=11.79	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:134,7:0.041:6:1:.:4195,196:66:68	0/0:121,1:9.901e-03:1:0:.:3733,28:53:68
chr19	48343346	.	A	G	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.21;TLOD=4.22	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:33,3:0.067:3:0:0.00:1043,101:14:19	0/0:15,0:0.00:0:0:.:484,0:2:13
chr19	48589294	rs10401347	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=6.35	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:0,4:1.00:4:0:1.00:0,89:0:0	0/0:4,0:0.00:0:0:.:132,0:3:1
chr19	48616643	.	CCAGCA	C	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=7.71;RPA=7,6;RU=CAGCA;STR;TLOD=5.40	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:42,2:0.029:2:0:.:786,67:15:9	0/0:27,0:0.00:0:0:.:570,0:6:11
chr19	49035802	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=12.34;TLOD=6.01	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:37,3:0.075:2:1:0.667:1221,92:21:16	0/0:304,0:0.00:0:0:.:9326,0:144:160
chr19	49055366	.	A	G	.	t_lod_fstar	ECNT=1;HCNT=8;MAX_ED=.;MIN_ED=.;NLOD=55.66;TLOD=5.26	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:271,5:0.021:1:4:0.800:8877,166:149:122	0/0:238,1:4.808e-03:1:0:0.00:7700,34:135:103
chr19	49154632	.	TTCC	T	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=8.17;RPA=8,7;RU=TCC;STR;TLOD=4.88	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:34,2:0.057:1:1:.:1113,67:10:24	0/0:40,1:0.024:1:0:.:1313,32:25:15
chr19	49190301	.	A	C	.	alt_allele_in_normal;germline_risk;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.62;TLOD=5.34	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:99,44:0.283:26:18:0.409:2779,103:49:50	0/0:75,28:0.283:22:6:0.214:2139,58:41:34
chr19	49862855	.	T	C	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.12;TLOD=5.56	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:12,2:0.143:0:2:0.00:394,71:7:5	0/0:17,0:0.00:0:0:.:564,0:5:12
chr19	50566578	.	G	GT	.	germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.904;RPA=1,2;RU=T;STR;TLOD=13.00	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,4:0.800:3:1:.:35,128:1:0	0/0:4,0:0.00:0:0:.:125,0:2:2
chr19	51367794	.	C	T	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.01;TLOD=4.18	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:15,2:0.118:1:1:0.500:490,59:6:9	0/0:11,0:0.00:0:0:.:353,0:3:8
chr19	51458362	.	GGCA	G	.	alt_allele_in_normal;str_contraction	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.27;RPA=8,7;RU=GCA;STR;TLOD=9.28	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:69,4:0.061:1:3:.:2326,138:37:32	0/0:81,6:0.063:5:1:.:2739,205:43:38
chr19	52406205	rs2245620	T	G	.	germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=6.40	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,2:0.333:1:1:0.500:138,71:1:3	0/0:6,0:0.00:0:0:.:210,0:4:2
chr19	52434878	rs2434459	G	C	.	germline_risk;t_lod_fstar	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=6.07	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:3,2:0.400:1:1:0.500:108,66:2:1	0/0:4,0:0.00:0:0:.:145,0:2:2
chr19	52521983	.	T	A	.	germline_risk;t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=5.55	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,2:0.500:0:2:0.00:67,58:1:1	0/0:4,0:0.00:0:0:.:133,0:4:0
chr19	52849256	.	A	T	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=3;HCNT=36;MAX_ED=24;MIN_ED=14;NLOD=20.24;TLOD=5.39	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:151,4:0.027:4:0:0.00:4839,122:67:84	0/0:146,9:0.063:3:6:0.667:4738,284:74:72
chr19	52849270	.	A	G	.	alt_allele_in_normal;clustered_events	ECNT=3;HCNT=36;MAX_ED=24;MIN_ED=14;NLOD=12.16;TLOD=7.42	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:116,3:0.025:2:1:0.333:0|1:52849270_A_G:3854,105:52:64	0/0:89,6:0.063:4:2:0.333:0|1:52849270_A_G:2991,206:44:45
chr19	52849280	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=3;HCNT=36;MAX_ED=24;MIN_ED=14;NLOD=13.01;TLOD=7.47	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:111,3:0.026:2:1:0.667:0|1:52849270_A_G:3678,98:44:67	0/0:83,4:0.057:3:1:0.750:0|1:52849270_A_G:2804,131:42:41
chr19	52888323	.	G	GGA	.	germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;RPA=2,3;RU=GA;STR;TLOD=10.83	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,3:0.600:1:2:.:69,99:1:1	0/0:92,0:0.00:0:0:.:3137,0:50:42
chr19	53375856	.	G	A	.	alt_allele_in_normal	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=2.40;TLOD=7.66	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:137,7:0.049:4:3:0.571:4637,234:73:64	0/0:234,15:0.064:11:4:0.733:7974,498:117:117
chr19	53449342	.	T	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=18.35;TLOD=4.10	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:63,3:0.048:1:2:0.333:2019,100:34:29	0/0:63,0:0.00:0:0:.:2006,0:32:31
chr19	53747251	rs4803177	C	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.80;TLOD=15.19	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:3,5:0.625:2:3:0.600:47,151:3:0	0/0:6,0:0.00:0:0:.:150,0:6:0
chr19	53942318	.	GCCT	G	.	alt_allele_in_normal;str_contraction	ECNT=1;HCNT=8;MAX_ED=.;MIN_ED=.;NLOD=38.97;RPA=5,4;RU=CCT;STR;TLOD=15.49	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:199,7:0.032:3:4:.:6742,244:84:115	0/0:170,2:0.013:0:2:.:5613,39:63:107
chr19	55145401	.	GGGA	G	.	str_contraction	ECNT=1;HCNT=6;MAX_ED=.;MIN_ED=.;NLOD=13.82;RPA=6,5;RU=GGA;STR;TLOD=8.03	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:72,3:0.040:2:1:.:2365,108:40:32	0/0:60,1:0.016:0:1:.:2004,35:27:33
chr19	55706146	.	T	TTCC	.	germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.607;RPA=4,5;RU=TCC;STR;TLOD=14.05	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:3,3:0.571:1:2:.:97,102:3:0	0/0:3,0:0.00:0:0:.:99,0:2:1
chr19	55955602	.	C	T	.	t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=64.95;TLOD=4.50	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:257,4:0.013:2:2:0.500:7907,131:124:133	0/0:241,0:0.00:0:0:.:7459,0:147:94
chr19	56019268	.	T	C	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.92;TLOD=4.63	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:26,2:0.071:0:2:0.00:855,68:13:13	0/0:23,0:0.00:0:0:.:780,0:13:10
chr19	56320615	.	AAAT	A	.	alt_allele_in_normal;str_contraction;t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=2.87;RPA=7,6;RU=AAT;STR;TLOD=5.58	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:24,2:0.077:1:1:.:813,64:15:9	0/0:23,1:0.042:0:1:.:771,32:14:9
chr19	57235121	.	GCA	G	.	str_contraction	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=8.16;RPA=7,6;RU=CA;STR;TLOD=10.81	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:40,5:0.114:3:2:.:1372,175:16:24	0/0:38,1:0.026:1:0:.:1289,35:16:22
chr19	57455314	.	A	T	.	germline_risk;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=4.78	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:8,2:0.200:1:1:0.500:271,60:6:2	0/0:5,0:0.00:0:0:.:172,0:4:1
chr19	57475779	.	A	C	.	alt_allele_in_normal;t_lod_fstar	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=11.49;TLOD=5.40	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:126,34:0.185:19:15:0.441:3464,192:38:88	0/0:106,24:0.202:14:10:0.417:2883,87:45:61
chr19	57927554	.	C	G	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=21.67;TLOD=4.20	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:73,2:0.028:2:0:0.00:2530,72:48:25	0/0:78,0:0.00:0:0:.:2783,0:41:37
chr20	1578377	.	CCA	C	.	alt_allele_in_normal;clustered_events	ECNT=2;HCNT=6;MAX_ED=5;MIN_ED=5;NLOD=13.92;TLOD=6.89	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:178,3:0.017:2:1:.:0|1:1578377_CCA_C:6081,103:79:99	0/0:177,14:0.055:6:8:.:0|1:1578377_CCA_C:6126,500:85:92
chr20	1578382	.	TC	T	.	alt_allele_in_normal;clustered_events	ECNT=2;HCNT=6;MAX_ED=5;MIN_ED=5;NLOD=13.96;TLOD=6.88	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:175,3:0.017:2:1:.:0|1:1578377_CCA_C:5444,80:78:97	0/0:177,14:0.055:6:8:.:0|1:1578377_CCA_C:5578,447:86:91
chr20	1578470	.	G	T	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=6;HCNT=3;MAX_ED=19;MIN_ED=4;NLOD=47.92;TLOD=4.04	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:244,2:8.929e-03:1:1:0.500:0|1:1578470_G_T:8319,66:129:115	0/0:240,8:0.036:2:6:0.250:0|1:1578470_G_T:8251,264:122:118
chr20	1578474	.	G	T	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=6;HCNT=3;MAX_ED=19;MIN_ED=4;NLOD=46.42;TLOD=4.05	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:238,2:9.009e-03:1:1:0.500:0|1:1578470_G_T:8177,70:125:113	0/0:240,8:0.037:2:6:0.250:0|1:1578470_G_T:8398,271:121:119
chr20	1578476	.	T	C	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=6;HCNT=3;MAX_ED=19;MIN_ED=4;NLOD=47.02;TLOD=4.04	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:236,2:8.889e-03:1:1:0.500:0|1:1578470_G_T:7921,72:124:112	0/0:236,8:0.036:2:6:0.250:0|1:1578470_G_T:7856,280:121:115
chr20	1578487	.	A	G	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=6;HCNT=3;MAX_ED=19;MIN_ED=4;NLOD=45.82;TLOD=4.06	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:222,2:9.174e-03:1:1:0.500:0|1:1578470_G_T:7256,65:122:100	0/0:226,7:0.037:2:5:0.714:0|1:1578470_G_T:7434,248:119:107
chr20	1578488	.	G	A	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=6;HCNT=3;MAX_ED=19;MIN_ED=4;NLOD=45.82;TLOD=4.07	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:224,2:9.217e-03:1:1:0.500:0|1:1578470_G_T:7678,58:125:99	0/0:224,7:0.037:2:5:0.286:0|1:1578470_G_T:7797,210:119:105
chr20	1578489	.	T	C	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=6;HCNT=3;MAX_ED=19;MIN_ED=4;NLOD=49.11;TLOD=4.07	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:222,2:9.259e-03:1:1:0.500:0|1:1578470_G_T:7241,70:124:98	0/0:222,7:0.033:2:5:0.286:0|1:1578470_G_T:7242,235:118:104
chr20	1578684	.	A	C	.	alt_allele_in_normal	ECNT=1;HCNT=26;MAX_ED=.;MIN_ED=.;NLOD=2.24;TLOD=6.79	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:108,30:0.227:21:9:0.300:3011,209:51:57	0/0:97,27:0.243:20:7:0.259:2588,166:44:53
chr20	1611373	.	G	A	.	clustered_events;homologous_mapping_event;t_lod_fstar	ECNT=4;HCNT=7;MAX_ED=174;MIN_ED=23;NLOD=12.29;TLOD=4.45	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:51,3:0.061:1:2:0.333:1501,96:30:21	0/0:42,0:0.00:0:0:.:1220,0:19:23
chr20	1611396	.	CCA	C	.	alt_allele_in_normal;clustered_events	ECNT=4;HCNT=9;MAX_ED=174;MIN_ED=23;NLOD=4.25;TLOD=14.71	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:66,5:0.072:1:4:.:0|1:1611396_CCA_C:2285,170:36:30	0/0:57,3:0.051:1:2:.:0|1:1611396_CCA_C:1923,105:29:28
chr20	1611401	.	TG	T	.	alt_allele_in_normal;clustered_events;germline_risk	ECNT=4;HCNT=9;MAX_ED=174;MIN_ED=23;NLOD=1.78;RPA=2,1;RU=G;STR;TLOD=14.65	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:68,5:0.070:1:4:.:0|1:1611396_CCA_C:2106,151:39:29	0/0:53,3:0.065:1:2:.:0|1:1611396_CCA_C:1613,92:28:25
chr20	1611547	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=4;HCNT=9;MAX_ED=174;MIN_ED=23;NLOD=7.57;TLOD=14.03	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:65,5:0.074:4:1:0.200:2277,164:30:35	0/0:52,5:0.089:2:3:0.600:1812,168:25:27
chr20	1611697	.	T	C	.	alt_allele_in_normal;germline_risk	ECNT=1;HCNT=8;MAX_ED=.;MIN_ED=.;NLOD=0.676;TLOD=16.53	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:18,6:0.273:3:3:0.500:611,199:7:11	0/0:29,2:0.069:1:1:0.500:966,71:12:17
chr20	1915167	.	A	T	.	alt_allele_in_normal;clustered_events	ECNT=3;HCNT=9;MAX_ED=29;MIN_ED=22;NLOD=3.04;TLOD=17.19	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:48,6:0.118:3:3:0.500:1492,188:25:23	0/0:38,2:0.050:1:1:0.500:1207,63:17:21
chr20	1915189	.	C	T	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=3;HCNT=6;MAX_ED=29;MIN_ED=22;NLOD=4.85;TLOD=4.89	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:46,1:0.043:0:1:1.00:0|1:1915189_C_T:1434,32:23:23	0/0:45,2:0.043:1:1:0.500:0|1:1915189_C_T:1439,64:24:21
chr20	1915196	.	T	C	.	alt_allele_in_normal;clustered_events	ECNT=3;HCNT=6;MAX_ED=29;MIN_ED=22;NLOD=5.15;TLOD=7.40	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:41,3:0.067:1:2:0.333:0|1:1915189_C_T:1352,104:20:21	0/0:45,2:0.043:1:1:0.500:0|1:1915189_C_T:1493,71:23:22
chr20	2863788	.	C	G	.	clustered_events;germline_risk;multi_event_alt_allele_in_normal;t_lod_fstar	ECNT=2;HCNT=4;MAX_ED=3;MIN_ED=3;NLOD=1.15;TLOD=5.16	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:4,4:0.400:1:3:0.750:0|1:2863788_C_G:130,46:0:4	0/0:5,1:0.111:1:0:0.00:0|1:2863788_C_G:160,2:2:3
chr20	2863791	.	A	G	.	clustered_events;germline_risk;multi_event_alt_allele_in_normal;t_lod_fstar	ECNT=2;HCNT=4;MAX_ED=3;MIN_ED=3;NLOD=1.15;TLOD=4.78	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:8,4:0.333:1:3:0.750:0|1:2863788_C_G:235,50:1:7	0/0:8,1:0.111:1:0:0.00:0|1:2863788_C_G:243,2:3:5
chr20	4795721	rs6052886	G	T	.	germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=3.07;TLOD=23.18	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:29,22:0.302:1:1:0.500:1001,62:15:14	0/0:40,21:0.208:0:0:.:1377,0:23:17
chr20	10645368	.	T	G	.	alt_allele_in_normal;germline_risk	ECNT=1;HCNT=5;MAX_ED=.;MIN_ED=.;NLOD=1.44;TLOD=9.31	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:97,44:0.265:15:29:0.341:2781,340:48:49	0/0:97,24:0.224:8:16:0.333:2837,159:45:52
chr20	10646866	.	T	G	.	alt_allele_in_normal;t_lod_fstar	ECNT=1;HCNT=8;MAX_ED=.;MIN_ED=.;NLOD=8.66;TLOD=4.92	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:97,14:0.115:8:6:0.571:2916,154:54:43	0/0:87,15:0.150:7:8:0.467:2506,138:53:34
chr20	10658450	.	GCA	G	.	alt_allele_in_normal;germline_risk;str_contraction;t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.34;RPA=7,6;RU=CA;STR;TLOD=5.31	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:177,4:8.547e-03:1:3:.:5908,126:77:91	0/0:102,11:0.026:5:6:.:3049,399:43:46
chr20	18220217	.	C	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.87;TLOD=4.19	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:21,2:0.087:1:1:0.500:531,62:9:12	0/0:23,0:0.00:0:0:.:579,0:8:15
chr20	22733709	.	C	G	.	alt_allele_in_normal	ECNT=2;HCNT=1;MAX_ED=2;MIN_ED=2;NLOD=7.92;TLOD=22.92	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:119,5:0.061:1:4:0.800:0|1:22733709_C_G:4053,162:63:56	0/0:104,6:0.068:2:4:0.667:0|1:22733709_C_G:3542,198:52:52
chr20	22733711	.	C	T	.	alt_allele_in_normal	ECNT=2;HCNT=1;MAX_ED=2;MIN_ED=2;NLOD=10.31;TLOD=13.42	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:116,4:0.041:1:3:0.750:0|1:22733709_C_G:3931,123:63:53	0/0:105,6:0.055:2:4:0.667:0|1:22733709_C_G:3596,187:54:51
chr20	23035914	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=52.91;TLOD=4.39	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:185,3:0.018:1:2:0.333:5809,95:107:78	0/0:187,0:0.00:0:0:.:5926,0:119:68
chr20	23365283	.	AGAG	A	.	alt_allele_in_normal;str_contraction	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=13.73;RPA=6,5;RU=GAG;STR;TLOD=6.86	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:86,3:0.035:2:1:.:2839,91:39:47	0/0:92,4:0.042:1:3:.:3011,114:37:55
chr20	23568579	rs6083173	C	A	.	germline_risk;t_lod_fstar	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=6.19	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:3,2:0.400:1:1:0.500:105,67:1:2	0/0:4,0:0.00:0:0:.:131,0:2:2
chr20	23635385	.	C	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=9.93;TLOD=4.28	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:37,2:0.054:0:2:1.00:1286,67:21:16	0/0:33,0:0.00:0:0:.:1172,0:17:16
chr20	23877438	.	TAC	T	.	alt_allele_in_normal;str_contraction	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.75;RPA=6,5;RU=AC;STR;TLOD=6.49	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:34,3:0.081:1:2:.:1075,99:23:11	0/0:26,1:0.037:1:0:.:840,32:13:13
chr20	24543546	.	TGGA	T	.	alt_allele_in_normal;str_contraction;t_lod_fstar	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=21.56;RPA=5,4;RU=GGA;STR;TLOD=4.45	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:168,2:0.014:2:0:.:5280,66:90:78	0/0:125,3:0.026:2:1:.:3959,96:56:69
chr20	29082616	.	G	A	.	alt_allele_in_normal;t_lod_fstar	ECNT=1;HCNT=12;MAX_ED=.;MIN_ED=.;NLOD=3.99;TLOD=4.34	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:29,2:0.065:2:0:1.00:1015,70:13:16	0/0:40,2:0.053:0:2:0.00:1395,65:20:20
chr20	29091576	.	ATCAT	A	.	alt_allele_in_normal	ECNT=1;HCNT=6;MAX_ED=.;MIN_ED=.;NLOD=27.70;TLOD=7.72	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:98,3:0.032:2:1:.:3052,99:49:49	0/0:153,7:0.045:3:4:.:4700,221:69:84
chr20	29101515	.	G	A	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=2;HCNT=15;MAX_ED=21;MIN_ED=21;NLOD=56.43;TLOD=4.08	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:271,6:0.023:2:4:0.333:9618,209:146:125	0/0:325,10:0.022:2:8:0.200:11523,348:162:163
chr20	29101536	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=2;HCNT=23;MAX_ED=21;MIN_ED=21;NLOD=50.65;TLOD=10.29	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:262,5:0.022:4:1:0.800:9181,174:143:119	0/0:305,7:0.023:5:2:0.714:10779,240:155:150
chr20	29411237	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=7;HCNT=7;MAX_ED=131;MIN_ED=9;NLOD=19.08;TLOD=54.13	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:131,18:0.123:6:12:0.667:0|1:29411237_C_T:3916,588:64:67	0/0:130,5:0.037:2:3:0.600:0|1:29411237_C_T:3922,160:75:55
chr20	29411246	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=7;HCNT=7;MAX_ED=131;MIN_ED=9;NLOD=16.97;TLOD=54.73	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:108,18:0.133:6:12:0.333:0|1:29411237_C_T:3704,603:55:53	0/0:121,3:0.039:1:2:0.333:0|1:29411237_C_T:4238,100:68:53
chr20	29411311	.	T	A	.	alt_allele_in_normal;clustered_events	ECNT=7;HCNT=2;MAX_ED=131;MIN_ED=9;NLOD=3.73;TLOD=14.17	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:85,5:0.057:3:2:0.600:0|1:29411311_T_A:2638,162:47:38	0/0:141,12:0.079:9:3:0.750:0|1:29411311_T_A:4449,380:75:66
chr20	29411323	.	T	C	.	alt_allele_in_normal;clustered_events	ECNT=7;HCNT=2;MAX_ED=131;MIN_ED=9;NLOD=2.23;TLOD=13.95	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:96,5:0.052:3:2:0.600:0|1:29411311_T_A:3031,169:54:42	0/0:135,12:0.083:9:3:0.750:0|1:29411311_T_A:4322,425:76:59
chr20	29411343	.	G	C	.	alt_allele_in_normal;clustered_events	ECNT=7;HCNT=11;MAX_ED=131;MIN_ED=9;NLOD=7.55;TLOD=7.42	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:99,3:0.015:2:1:0.667:2808,72:56:43	0/0:121,10:0.038:5:3:0.625:3486,232:69:52
chr20	29411365	.	C	A	.	alt_allele_in_normal;clustered_events	ECNT=7;HCNT=3;MAX_ED=131;MIN_ED=9;NLOD=28.76;TLOD=9.27	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:85,4:0.022:2:2:0.500:0|1:29411365_C_A:2642,125:47:38	0/0:122,4:0.014:2:2:0.500:0|1:29411365_C_A:3673,136:64:57
chr20	29411368	.	T	G	.	alt_allele_in_normal;clustered_events	ECNT=7;HCNT=3;MAX_ED=131;MIN_ED=9;NLOD=30.14;TLOD=7.73	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:95,3:0.032:1:2:0.333:0|1:29411365_C_A:2867,97:53:42	0/0:152,4:0.026:2:2:0.500:0|1:29411365_C_A:4443,135:81:71
chr20	29411387	.	A	C	.	alt_allele_in_normal;clustered_events	ECNT=26;HCNT=4;MAX_ED=68;MIN_ED=7;NLOD=13.11;TLOD=19.55	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:126,5:0.052:1:4:0.800:0|1:29411387_A_C:3879,170:68:58	0/0:208,10:0.048:7:3:0.300:0|1:29411387_A_C:6521,342:117:91
chr20	29411394	.	A	T	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=26;HCNT=3;MAX_ED=68;MIN_ED=7;NLOD=56.96;TLOD=4.42	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:140,2:0.014:1:1:0.500:0|1:29411394_A_T:4400,67:73:67	0/0:239,3:0.012:1:2:0.667:0|1:29411394_A_T:7684,101:134:105
chr20	29411398	.	T	A	.	alt_allele_in_normal;clustered_events	ECNT=26;HCNT=4;MAX_ED=68;MIN_ED=7;NLOD=15.52;TLOD=24.66	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:138,8:0.058:2:6:0.250:0|1:29411387_A_C:4504,253:71:67	0/0:238,13:0.049:9:4:0.692:0|1:29411387_A_C:7806,423:134:104
chr20	29411400	.	A	T	.	alt_allele_in_normal;clustered_events	ECNT=26;HCNT=6;MAX_ED=68;MIN_ED=7;NLOD=31.13;TLOD=7.03	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:154,3:0.019:2:1:0.333:0|1:29411400_A_T:4900,92:74:80	0/0:243,8:0.032:4:4:0.500:0|1:29411400_A_T:7899,257:138:105
chr20	29411405	.	A	T	.	alt_allele_in_normal;clustered_events	ECNT=26;HCNT=4;MAX_ED=68;MIN_ED=7;NLOD=16.38;TLOD=20.04	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:152,9:0.027:3:6:0.667:0|1:29411387_A_C:4426,296:67:73	0/0:239,13:0.026:9:4:0.308:0|1:29411387_A_C:7240,429:122:101
chr20	29411409	.	C	G	.	alt_allele_in_normal;clustered_events	ECNT=26;HCNT=6;MAX_ED=68;MIN_ED=7;NLOD=37.75;TLOD=6.87	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:180,3:0.017:2:1:0.333:0|1:29411400_A_T:6253,105:84:96	0/0:269,8:0.029:4:4:0.500:0|1:29411400_A_T:9394,272:153:116
chr20	29411412	.	G	A	.	alt_allele_in_normal;clustered_events;t_lod_fstar;triallelic_site	ECNT=26;HCNT=3;MAX_ED=68;MIN_ED=7;NLOD=62.04;TLOD=4.05	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:189,2:5.495e-03:1:1:0.500:0|1:29411394_A_T:6372,66:90:99	0/0:275,3:5.671e-03:1:2:0.333:0|1:29411394_A_T:9424,99:159:116
chr20	29411415	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=26;HCNT=3;MAX_ED=68;MIN_ED=7;NLOD=42.59;TLOD=9.51	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:200,4:0.020:2:2:0.500:6632,133:95:105	0/0:288,9:0.031:4:5:0.556:9774,282:168:120
chr20	29411423	.	C	G	.	alt_allele_in_normal;clustered_events	ECNT=26;HCNT=3;MAX_ED=68;MIN_ED=7;NLOD=27.91;TLOD=40.04	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:227,12:0.060:7:5:0.417:0|1:29411423_C_G:7754,413:106:121	0/0:324,14:0.041:5:9:0.643:0|1:29411423_C_G:11101,480:186:138
chr20	29411426	.	G	C	.	alt_allele_in_normal;clustered_events	ECNT=26;HCNT=9;MAX_ED=68;MIN_ED=7;NLOD=31.83;TLOD=28.46	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:244,18:0.050:7:11:0.389:8261,615:118:126	0/0:349,18:0.046:14:4:0.778:12131,629:190:159
chr20	29411431	.	C	T	.	clustered_events;multi_event_alt_allele_in_normal;t_lod_fstar	ECNT=26;HCNT=1;MAX_ED=68;MIN_ED=7;NLOD=99.96;TLOD=6.15	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:274,3:5.814e-03:1:2:0.667:0|1:29411431_C_T:9307,90:134:140	0/0:395,1:1.271e-03:1:0:0.00:0|1:29411431_C_T:13500,33:221:174
chr20	29411432	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=26;HCNT=3;MAX_ED=68;MIN_ED=7;NLOD=32.06;TLOD=51.25	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:273,18:0.036:10:8:0.444:0|1:29411423_C_G:8501,564:133:140	0/0:399,17:0.021:8:9:0.529:0|1:29411423_C_G:12165,547:223:175
chr20	29411435	.	T	C	.	alt_allele_in_normal;clustered_events	ECNT=26;HCNT=2;MAX_ED=68;MIN_ED=7;NLOD=27.61;TLOD=9.00	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:294,4:0.015:0:4:0.00:0|1:29411435_T_C:9175,119:147:147	0/0:409,22:0.055:14:8:0.636:0|1:29411435_T_C:12978,621:226:183
chr20	29411437	.	G	C	.	clustered_events;multi_event_alt_allele_in_normal	ECNT=26;HCNT=1;MAX_ED=68;MIN_ED=7;NLOD=102.36;TLOD=6.38	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:306,3:0.011:1:2:0.333:0|1:29411431_C_T:10315,98:149:157	0/0:434,1:2.451e-03:1:0:1.00:0|1:29411431_C_T:14760,35:245:189
chr20	29411438	.	C	G	.	alt_allele_in_normal;clustered_events	ECNT=26;HCNT=2;MAX_ED=68;MIN_ED=7;NLOD=25.74;TLOD=11.35	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:304,4:9.709e-03:0:4:1.00:0|1:29411435_T_C:10230,138:149:153	0/0:413,22:0.029:14:8:0.364:0|1:29411435_T_C:13920,742:229:182
chr20	29411439	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=26;HCNT=4;MAX_ED=68;MIN_ED=7;NLOD=36.52;TLOD=12.28	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:300,7:0.022:4:3:0.429:10147,228:146:154	0/0:411,25:0.047:21:4:0.160:13963,832:227:184
chr20	29411441	.	G	T	.	alt_allele_in_normal;clustered_events	ECNT=26;HCNT=3;MAX_ED=68;MIN_ED=7;NLOD=48.95;TLOD=28.73	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:299,12:0.021:6:6:0.500:0|1:29411441_G_T:10221,396:149:150	0/0:414,19:0.019:9:10:0.474:0|1:29411441_G_T:14315,625:237:177
chr20	29411442	.	G	C	.	alt_allele_in_normal;clustered_events	ECNT=26;HCNT=3;MAX_ED=68;MIN_ED=7;NLOD=43.61;TLOD=29.05	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:268,12:0.023:6:6:0.500:0|1:29411441_G_T:8960,431:135:133	0/0:383,19:0.020:9:10:0.474:0|1:29411441_G_T:12946,667:213:170
chr20	29411443	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=26;HCNT=3;MAX_ED=68;MIN_ED=7;NLOD=53.47;TLOD=29.45	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:299,12:0.040:6:6:0.500:0|1:29411441_G_T:10176,380:152:147	0/0:417,19:0.035:9:10:0.474:0|1:29411441_G_T:14213,601:234:183
chr20	29411444	.	C	G	.	alt_allele_in_normal;clustered_events;triallelic_site	ECNT=26;HCNT=3;MAX_ED=68;MIN_ED=7;NLOD=24.02;TLOD=61.00	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:256,21:0.045:13:8:0.381:0|1:29411423_C_G:8668,699:129:126	0/0:400,20:0.023:9:11:0.550:0|1:29411423_C_G:13480,689:220:177
chr20	29411447	.	G	C	.	alt_allele_in_normal;clustered_events;t_lod_fstar;triallelic_site	ECNT=26;HCNT=1;MAX_ED=68;MIN_ED=7;NLOD=99.60;TLOD=6.17	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:296,3:5.917e-03:2:1:0.667:10022,91:146:145	0/0:421,3:3.866e-03:3:0:1.00:14275,73:235:180
chr20	29411448	.	C	A	.	alt_allele_in_normal;clustered_events	ECNT=26;HCNT=3;MAX_ED=68;MIN_ED=7;NLOD=39.00;TLOD=38.00	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:266,22:0.029:12:10:0.455:8840,681:130:130	0/0:374,18:0.023:8:10:0.556:12221,549:205:154
chr20	29411449	.	C	T	.	alt_allele_in_normal;clustered_events;triallelic_site	ECNT=26;HCNT=2;MAX_ED=68;MIN_ED=7;NLOD=84.25;TLOD=8.71	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:302,4:7.843e-03:1:3:0.750:10412,137:155:146	0/0:409,5:6.468e-03:4:1:0.200:14026,168:230:177
chr20	29411450	.	T	C	.	alt_allele_in_normal;clustered_events;triallelic_site	ECNT=26;HCNT=2;MAX_ED=68;MIN_ED=7;NLOD=6.20;TLOD=6.50	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:269,5:8.721e-03:3:2:0.600:9039,169:144:125	0/0:276,33:0.039:23:10:0.697:9204,1117:146:130
chr20	29411453	.	CT	C	.	alt_allele_in_normal;clustered_events	ECNT=26;HCNT=7;MAX_ED=68;MIN_ED=7;NLOD=33.49;TLOD=83.11	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:290,33:0.098:16:17:.:10034,1132:149:141	0/0:424,19:0.043:15:4:.:14724,669:235:189
chr20	29411455	.	C	T	.	clustered_events;multi_event_alt_allele_in_normal	ECNT=26;HCNT=1;MAX_ED=68;MIN_ED=7;NLOD=102.36;TLOD=6.36	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:318,3:0.011:1:2:0.667:0|1:29411431_C_T:11079,97:163:155	0/0:433,1:2.433e-03:1:0:0.00:0|1:29411431_C_T:15067,34:241:192
chr20	29416193	.	G	A	.	alt_allele_in_normal	ECNT=1;HCNT=16;MAX_ED=.;MIN_ED=.;NLOD=3.35;TLOD=9.69	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:107,3:0.036:2:1:0.667:3750,99:53:54	0/0:96,6:0.087:2:4:0.333:3348,194:36:60
chr20	29741492	.	G	T	.	clustered_events;homologous_mapping_event;t_lod_fstar	ECNT=4;HCNT=8;MAX_ED=32;MIN_ED=12;NLOD=3.01;TLOD=4.59	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,2:0.333:1:1:0.500:139,64:2:2	0/0:11,0:0.00:0:0:.:387,0:6:5
chr20	29741504	.	G	A	.	clustered_events;homologous_mapping_event;t_lod_fstar	ECNT=4;HCNT=8;MAX_ED=32;MIN_ED=12;NLOD=2.71;TLOD=4.28	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:7,2:0.222:1:1:0.500:218,66:3:4	0/0:10,0:0.00:0:0:.:297,0:5:5
chr20	29741517	.	C	T	.	clustered_events;homologous_mapping_event	ECNT=4;HCNT=8;MAX_ED=32;MIN_ED=12;NLOD=3.31;TLOD=6.93	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:7,2:0.222:1:1:0.500:0|1:29741517_C_T:234,66:4:3	0/0:12,0:0.00:0:0:.:0|1:29741517_C_T:424,0:7:5
chr20	29741524	.	A	G	.	clustered_events;homologous_mapping_event	ECNT=4;HCNT=8;MAX_ED=32;MIN_ED=12;NLOD=3.01;TLOD=7.05	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:6,2:0.250:1:1:0.500:0|1:29741517_C_T:191,70:4:2	0/0:11,0:0.00:0:0:.:0|1:29741517_C_T:348,0:7:4
chr20	29747290	.	C	T	.	alt_allele_in_normal;t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=9.30;TLOD=4.83	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:72,3:0.042:2:1:0.333:2540,99:30:42	0/0:57,5:0.066:2:3:0.600:2036,161:23:34
chr20	29879315	.	T	C	.	PASS	ECNT=2;HCNT=22;MAX_ED=2;MIN_ED=2;NLOD=2.41;TLOD=7.18	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:5,2:0.286:1:1:0.500:0|1:29879315_T_C:157,57:1:4	0/0:9,0:0.00:0:0:.:0|1:29879315_T_C:292,0:6:3
chr20	29879317	.	T	G	.	PASS	ECNT=2;HCNT=22;MAX_ED=2;MIN_ED=2;NLOD=2.41;TLOD=7.34	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:5,2:0.333:1:1:0.500:0|1:29879315_T_C:159,63:1:4	0/0:9,0:0.00:0:0:.:0|1:29879315_T_C:286,0:6:3
chr20	30388542	.	A	G	.	alt_allele_in_normal	ECNT=1;HCNT=22;MAX_ED=.;MIN_ED=.;NLOD=11.35;TLOD=21.78	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:511,33:0.050:18:15:0.455:16841,996:267:244	0/0:576,65:0.087:35:30:0.462:19250,2071:315:261
chr20	30391197	.	A	C	.	alt_allele_in_normal;clustered_events	ECNT=2;HCNT=16;MAX_ED=52;MIN_ED=52;NLOD=5.05;TLOD=10.66	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:35,5:0.132:1:4:0.800:1121,174:12:23	0/0:30,1:0.030:0:1:1.00:997,35:17:13
chr20	30391249	.	C	CTTG	.	alt_allele_in_normal;clustered_events	ECNT=2;HCNT=28;MAX_ED=52;MIN_ED=52;NLOD=8.74;RPA=2,3;RU=TTG;STR;TLOD=18.73	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:36,5:0.154:0:5:.:1259,181:22:14	0/0:33,1:0.065:0:1:.:1145,34:23:10
chr20	30494491	.	G	A	.	alt_allele_in_normal;t_lod_fstar	ECNT=2;HCNT=8;MAX_ED=1;MIN_ED=1;NLOD=7.86;TLOD=4.88	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:95,2:0.023:1:1:0.500:0|1:30494491_G_A:3264,63:52:43	0/0:59,2:0.034:1:1:0.500:0|1:30494491_G_A:2039,60:29:30
chr20	30494492	.	C	T	.	alt_allele_in_normal;t_lod_fstar	ECNT=2;HCNT=8;MAX_ED=1;MIN_ED=1;NLOD=7.86;TLOD=4.87	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:91,2:0.023:1:1:0.500:0|1:30494491_G_A:3126,65:50:41	0/0:58,2:0.034:1:1:0.500:0|1:30494491_G_A:1995,61:28:30
chr20	30631127	.	G	A	.	germline_risk;t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=5.74	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:6,2:0.286:0:2:0.00:191,61:3:3	0/0:6,0:0.00:0:0:.:184,0:2:4
chr20	31550132	.	A	C	.	alt_allele_in_normal;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=15.81;TLOD=4.46	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:130,23:0.133:20:3:0.130:3463,167:53:77	0/0:126,25:0.182:16:9:0.360:3410,88:56:70
chr20	31849719	rs3746599	A	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=6.92	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,2:0.667:2:0:0.00:35,68:0:1	0/0:4,0:0.00:0:0:.:126,0:2:2
chr20	31922939	.	AATT	A	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.70;RPA=5,4;RU=ATT;STR;TLOD=5.11	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:68,2:0.030:2:0:.:2190,66:44:24	0/0:35,1:0.029:1:0:.:1138,33:16:19
chr20	33059320	rs6088082	C	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=12.55	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,4:0.667:3:1:0.250:69,123:2:0	0/0:7,0:0.00:0:0:.:238,0:4:3
chr20	35284337	.	C	CAGTGGGAG	.	t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=37.95;TLOD=4.38	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:151,2:0.013:2:0:.:4612,71:78:73	0/0:126,0:0.00:0:0:.:3880,0:53:73
chr20	35490845	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=12.64;TLOD=4.01	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:57,2:0.036:1:1:0.500:1949,68:23:34	0/0:45,0:0.00:0:0:.:1561,0:21:24
chr20	38222585	.	A	G	.	PASS	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=13.54;TLOD=14.05	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:62,7:0.098:2:5:0.714:1852,231:29:33	0/0:50,0:0.00:0:0:.:1512,0:26:24
chr20	38771807	.	G	T	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=9.63;TLOD=4.24	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:32,2:0.065:1:1:0.500:1066,65:16:16	0/0:34,0:0.00:0:0:.:1166,0:10:24
chr20	39038513	.	A	G	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=10.83;TLOD=4.41	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:59,2:0.040:2:0:0.00:1991,71:34:25	0/0:40,0:0.00:0:0:.:1359,0:21:19
chr20	44054394	.	T	C	.	PASS	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=20.16;TLOD=6.51	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:61,3:0.052:1:2:0.333:1960,102:35:26	0/0:69,0:0.00:0:0:.:2266,0:34:35
chr20	44343635	rs4812826	G	A	.	germline_risk;t_lod_fstar	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=5.68	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:7,2:0.222:1:1:0.500:233,68:4:3	0/0:6,0:0.00:0:0:.:209,0:5:1
chr20	44756861	.	GCA	G	.	alt_allele_in_normal;str_contraction	ECNT=1;HCNT=12;MAX_ED=.;MIN_ED=.;NLOD=53.30;RPA=6,5;RU=CA;STR;TLOD=14.13	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:293,10:0.011:2:8:.:9526,359:140:135	0/0:269,8:8.685e-03:5:3:.:8825,274:129:126
chr20	47238822	.	TTGC	T	.	alt_allele_in_normal;str_contraction	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.31;RPA=7,6;RU=TGC;STR;TLOD=10.67	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:56,4:0.070:3:1:.:1831,135:32:24	0/0:57,3:0.054:0:3:.:1875,100:31:26
chr20	47651116	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=8;MAX_ED=.;MIN_ED=.;NLOD=21.98;TLOD=5.42	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:66,3:0.043:2:1:0.667:2214,95:29:37	0/0:74,0:0.00:0:0:.:2567,0:33:41
chr20	48690933	.	A	G	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=23.77;TLOD=4.07	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:91,2:0.024:2:0:0.00:3049,72:58:33	0/0:86,0:0.00:0:0:.:2820,0:50:36
chr20	49011831	.	ATG	A	.	alt_allele_in_normal;str_contraction	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=5.96;RPA=10,9;RU=TG;STR;TLOD=9.23	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:54,9:0.086:5:4:.:1000,280:24:9	0/0:64,6:0.057:2:4:.:919,176:21:9
chr20	49224966	.	GGAA	G	.	alt_allele_in_normal;str_contraction	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=12.88;RPA=6,5;RU=GAA;STR;TLOD=10.90	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:98,4:0.046:3:1:.:2937,120:54:44	0/0:78,2:0.027:2:0:.:2402,68:33:45
chr20	50096635	.	A	G	.	t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=24.97;TLOD=4.08	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:82,2:0.025:1:1:0.500:2543,72:46:36	0/0:89,0:0.00:0:0:.:2756,0:41:48
chr20	50595546	.	C	T	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=19.51;TLOD=5.74	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:59,3:0.049:2:1:0.333:1983,95:36:23	0/0:68,0:0.00:0:0:.:2272,0:31:37
chr20	50958435	.	A	G	.	t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=17.15;TLOD=4.10	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:71,2:0.028:1:1:0.500:2337,71:30:41	0/0:61,0:0.00:0:0:.:1990,0:27:34
chr20	51524066	.	C	T	.	t_lod_fstar	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=36.22;TLOD=5.99	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:165,5:0.028:2:3:0.600:4925,151:94:71	0/0:139,0:0.00:0:0:.:4140,0:80:59
chr20	51712877	rs1205698	T	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=7.65	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:0,2:1.00:1:1:0.500:0,67:0:0	0/0:4,0:0.00:0:0:.:137,0:4:0
chr20	54591841	.	TTG	T	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.59;RPA=7,6;RU=TG;STR;TLOD=4.32	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:12,2:0.143:2:0:.:410,70:7:5	0/0:22,0:0.00:0:0:.:732,0:10:12
chr20	56248628	.	GTC	G	.	str_contraction	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=16.10;RPA=7,6;RU=TC;STR;TLOD=10.67	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:80,6:0.038:5:1:.:2605,213:36:38	0/0:66,1:7.874e-03:1:0:.:2214,36:33:30
chr20	62419427	.	C	A	.	germline_risk;t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=5.11	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:10,2:0.167:1:1:0.500:332,65:3:7	0/0:5,0:0.00:0:0:.:171,0:2:3
chr20	62709540	.	C	T	.	t_lod_fstar	ECNT=1;HCNT=6;MAX_ED=.;MIN_ED=.;NLOD=23.47;TLOD=5.04	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:108,3:0.029:2:1:0.333:3426,95:58:50	0/0:84,0:0.00:0:0:.:2747,0:47:37
chr20	62797207	.	C	T	.	t_lod_fstar	ECNT=1;HCNT=8;MAX_ED=.;MIN_ED=.;NLOD=21.62;TLOD=4.67	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:96,3:0.032:2:1:0.333:3269,90:40:56	0/0:77,0:0.00:0:0:.:2563,0:29:48
chr20	63353792	.	A	G	.	germline_risk;t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.16;TLOD=4.54	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:5,2:0.286:2:0:0.00:154,54:5:0	0/0:4,0:0.00:0:0:.:105,0:2:2
chr20	64049198	.	T	C	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=20.16;TLOD=4.05	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:87,2:0.027:1:1:0.500:2771,71:52:35	0/0:76,0:0.00:0:0:.:2448,0:35:41
chr21	9073232	.	C	T	.	germline_risk;t_lod_fstar	ECNT=1;HCNT=8;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=5.15	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,2:0.500:2:0:0.00:69,62:1:1	0/0:7,0:0.00:0:0:.:233,0:1:6
chr21	10330779	.	C	T	.	alt_allele_in_normal	ECNT=1;HCNT=18;MAX_ED=.;MIN_ED=.;NLOD=26.56;TLOD=15.72	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:175,8:0.046:4:4:0.500:5615,260:88:87	0/0:178,7:0.040:2:5:0.714:5791,230:93:85
chr21	10331040	.	C	G	.	alt_allele_in_normal	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=23.43;TLOD=30.86	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:234,17:0.068:6:11:0.647:7874,534:111:123	0/0:272,15:0.049:5:10:0.667:9362,466:111:161
chr21	10331627	.	A	T	.	alt_allele_in_normal	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=9.55;TLOD=16.35	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:56,7:0.109:4:3:0.429:1719,226:26:30	0/0:54,2:0.036:2:0:0.00:1641,63:28:26
chr21	10357998	.	C	A	.	germline_risk;t_lod_fstar	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=5.06	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:6,3:0.250:1:2:0.667:200,94:2:4	0/0:8,0:0.00:0:0:.:273,0:5:3
chr21	10388258	.	C	G	.	germline_risk	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.51;TLOD=10.57	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,4:0.500:1:3:0.750:140,137:1:3	0/0:7,0:0.00:0:0:.:242,0:5:2
chr21	10397775	.	G	C	.	alt_allele_in_normal;clustered_events	ECNT=2;HCNT=7;MAX_ED=71;MIN_ED=71;NLOD=8.50;TLOD=12.21	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:172,9:0.050:1:8:0.111:5883,279:78:94	0/0:233,16:0.066:6:10:0.375:7932,503:111:122
chr21	10397846	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=2;HCNT=4;MAX_ED=71;MIN_ED=71;NLOD=37.21;TLOD=28.57	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:318,12:0.042:6:6:0.500:10894,374:149:169	0/0:300,11:0.038:4:7:0.636:10207,354:148:152
chr21	10397942	.	T	C	.	alt_allele_in_normal;t_lod_fstar	ECNT=1;HCNT=14;MAX_ED=.;MIN_ED=.;NLOD=15.05;TLOD=4.18	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:41,3:0.068:1:2:0.333:1345,89:18:23	0/0:72,3:0.040:2:1:0.667:2343,85:32:40
chr21	10413594	.	T	C	.	alt_allele_in_normal;germline_risk	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=2.00;TLOD=11.37	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:51,5:0.089:4:1:0.800:1552,163:23:28	0/0:55,4:0.068:1:3:0.250:1653,138:36:19
chr21	10413630	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=7;HCNT=40;MAX_ED=163;MIN_ED=99;NLOD=21.19;TLOD=10.38	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:112,8:0.067:5:3:0.625:2965,211:48:64	0/0:124,5:0.039:0:5:0.00:3146,148:74:50
chr21	10413729	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=7;HCNT=38;MAX_ED=163;MIN_ED=99;NLOD=20.06;TLOD=53.53	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:438,25:0.052:13:12:0.520:0|1:10413729_G_A:13079,807:224:214	0/0:385,26:0.057:10:16:0.385:0|1:10413729_G_A:11658,841:219:166
chr21	10413734	.	A	G	.	alt_allele_in_normal;clustered_events	ECNT=7;HCNT=38;MAX_ED=163;MIN_ED=99;NLOD=25.53;TLOD=55.71	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:457,19:0.049:10:9:0.474:0|1:10413729_G_A:14598,608:238:219	0/0:393,26:0.055:10:16:0.615:0|1:10413729_G_A:12509,801:231:162
chr21	10413753	.	T	C	.	alt_allele_in_normal;clustered_events	ECNT=7;HCNT=38;MAX_ED=163;MIN_ED=99;NLOD=27.68;TLOD=39.45	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:450,16:0.036:10:6:0.625:0|1:10413729_G_A:13180,448:234:216	0/0:381,17:0.053:6:11:0.353:0|1:10413729_G_A:11095,503:216:165
chr21	10413758	.	AGATGGCGGCTG	A	.	alt_allele_in_normal;clustered_events	ECNT=7;HCNT=38;MAX_ED=163;MIN_ED=99;NLOD=55.28;TLOD=30.04	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:483,12:0.027:8:4:.:0|1:10413729_G_A:15605,387:250:233	0/0:395,14:0.037:4:10:.:0|1:10413729_G_A:12664,454:224:171
chr21	10413774	.	GGTAGGAGTA	G	.	alt_allele_in_normal;clustered_events	ECNT=7;HCNT=38;MAX_ED=163;MIN_ED=99;NLOD=40.12;TLOD=24.49	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:392,8:0.029:5:3:.:0|1:10413729_G_A:12378,275:200:192	0/0:322,10:0.043:1:9:.:0|1:10413729_G_A:10285,325:180:142
chr21	10413793	.	T	C	.	alt_allele_in_normal;clustered_events	ECNT=7;HCNT=38;MAX_ED=163;MIN_ED=99;NLOD=28.14;TLOD=22.70	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:296,9:0.035:5:4:0.556:0|1:10413729_G_A:9051,259:165:131	0/0:237,9:0.047:2:7:0.222:0|1:10413729_G_A:7131,226:139:98
chr21	10414718	.	G	A	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=2;HCNT=4;MAX_ED=21;MIN_ED=21;NLOD=4.35;TLOD=4.41	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:21,2:0.087:1:1:0.500:672,64:12:9	0/0:23,1:0.040:0:1:0.00:779,24:14:9
chr21	10414739	.	G	A	.	clustered_events	ECNT=2;HCNT=3;MAX_ED=21;MIN_ED=21;NLOD=8.13;TLOD=8.61	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:42,4:0.087:3:1:0.750:1389,126:21:21	0/0:29,0:0.00:0:0:.:954,0:15:14
chr21	10454080	.	G	A	.	alt_allele_in_normal	ECNT=1;HCNT=12;MAX_ED=.;MIN_ED=.;NLOD=4.35;TLOD=9.39	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:24,5:0.179:1:4:0.200:859,158:17:7	0/0:32,1:0.030:1:0:1.00:1145,30:17:15
chr21	10463068	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=2;HCNT=10;MAX_ED=29;MIN_ED=29;NLOD=19.13;TLOD=13.76	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:117,7:0.056:4:3:0.429:3306,233:55:62	0/0:152,9:0.055:5:4:0.444:4274,294:78:74
chr21	10463097	.	T	A	.	alt_allele_in_normal;clustered_events	ECNT=2;HCNT=9;MAX_ED=29;MIN_ED=29;NLOD=7.43;TLOD=22.65	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:82,10:0.109:4:6:0.400:2769,328:46:36	0/0:94,6:0.060:3:3:0.500:3139,198:48:46
chr21	10464942	.	T	C	.	alt_allele_in_normal	ECNT=1;HCNT=32;MAX_ED=.;MIN_ED=.;NLOD=4.67;TLOD=56.45	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:366,33:0.082:16:17:0.485:11908,988:194:172	0/0:300,29:0.082:13:16:0.448:9809,887:143:157
chr21	10465149	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.01;TLOD=5.64	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:5,2:0.286:1:1:0.500:168,65:4:1	0/0:10,0:0.00:0:0:.:343,0:5:5
chr21	10473402	.	T	C	.	alt_allele_in_normal;clustered_events	ECNT=2;HCNT=48;MAX_ED=88;MIN_ED=88;NLOD=8.60;TLOD=33.05	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:242,20:0.079:12:8:0.600:7990,704:104:138	0/0:258,19:0.070:12:7:0.632:8600,662:125:133
chr21	10473490	.	A	G	.	alt_allele_in_normal;clustered_events	ECNT=2;HCNT=37;MAX_ED=88;MIN_ED=88;NLOD=19.97;TLOD=19.50	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:304,15:0.045:6:9:0.600:9982,511:142:162	0/0:317,25:0.063:9:16:0.640:10458,864:163:154
chr21	10596231	.	T	C	.	germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=10.32	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:3,3:0.500:2:1:0.667:100,107:1:2	0/0:5,0:0.00:0:0:.:166,0:3:2
chr21	10639622	.	G	A	.	germline_risk	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=0.602;TLOD=8.07	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,3:0.600:2:1:0.667:58,100:1:1	0/0:2,0:0.00:0:0:.:56,0:0:2
chr21	13065125	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=2.41;TLOD=4.73	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:5,2:0.286:0:2:0.00:183,63:2:3	0/0:8,0:0.00:0:0:.:279,0:7:1
chr21	13824687	.	C	G	.	alt_allele_in_normal;clustered_events	ECNT=4;HCNT=2;MAX_ED=17;MIN_ED=1;NLOD=3.03;TLOD=16.71	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:24,5:0.172:4:1:0.200:0|1:13824687_C_G:827,169:12:12	0/0:30,1:0.034:1:0:0.00:0|1:13824687_C_G:1087,35:19:11
chr21	13824688	.	A	T	.	alt_allele_in_normal;clustered_events	ECNT=4;HCNT=2;MAX_ED=17;MIN_ED=1;NLOD=3.03;TLOD=16.71	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:23,5:0.172:4:1:0.200:0|1:13824687_C_G:757,155:11:12	0/0:29,1:0.033:1:0:0.00:0|1:13824687_C_G:988,32:18:11
chr21	13824702	.	T	C	.	alt_allele_in_normal;clustered_events	ECNT=4;HCNT=2;MAX_ED=17;MIN_ED=1;NLOD=3.03;TLOD=13.23	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:20,4:0.160:3:1:0.750:0|1:13824687_C_G:638,127:10:10	0/0:27,1:0.034:1:0:1.00:0|1:13824687_C_G:855,37:15:12
chr21	13824704	.	A	C	.	alt_allele_in_normal;clustered_events	ECNT=4;HCNT=2;MAX_ED=17;MIN_ED=1;NLOD=2.72;TLOD=13.30	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:20,4:0.167:3:1:0.250:0|1:13824687_C_G:657,126:10:10	0/0:26,1:0.036:1:0:0.00:0|1:13824687_C_G:865,35:14:12
chr21	14012241	.	C	A	.	germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=2.71;TLOD=41.73	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,12:0.857:6:6:0.500:62,385:1:1	0/0:9,0:0.00:0:0:.:311,0:4:5
chr21	26051060	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=19.87;TLOD=4.84	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:92,1:0.022:0:1:0.00:2925,32:46:46	0/0:67,0:0.00:0:0:.:2082,0:27:40
chr21	31453190	.	C	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.09;TLOD=4.08	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:27,14:0.321:8:6:0.429:880,93:13:14	0/0:27,5:0.185:1:4:0.800:810,13:11:16
chr21	31671943	.	GGCT	G	.	alt_allele_in_normal;str_contraction	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=7.56;RPA=7,6;RU=GCT;STR;TLOD=27.06	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:113,10:0.089:4:6:.:3782,319:72:41	0/0:113,6:0.056:4:2:.:3861,208:77:36
chr21	33288402	.	CACAG	C	.	t_lod_fstar	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=2.41;TLOD=5.61	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:3,3:0.500:2:1:.:104,109:1:2	0/0:8,0:0.00:0:0:.:274,0:3:5
chr21	33518909	.	C	T	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.72;TLOD=4.47	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:27,2:0.083:1:1:0.500:913,65:12:15	0/0:19,0:0.00:0:0:.:639,0:9:10
chr21	36402994	.	A	G	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=7.22;TLOD=4.31	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:21,2:0.087:1:1:0.500:688,63:12:9	0/0:24,0:0.00:0:0:.:799,0:10:14
chr21	41275531	.	CCTG	C	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=18.31;RPA=4,3;RU=CTG;STR;TLOD=5.10	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:68,2:0.030:0:2:.:2280,70:38:30	0/0:78,1:0.013:1:0:.:2651,31:39:39
chr21	41467930	.	A	G	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=22.52;TLOD=4.87	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:78,3:0.039:2:1:0.333:2553,97:45:33	0/0:80,0:0.00:0:0:.:2562,0:39:41
chr21	41468304	.	A	G	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.72;TLOD=4.93	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:16,2:0.111:0:2:1.00:517,67:7:9	0/0:19,0:0.00:0:0:.:616,0:8:11
chr21	43687576	.	GGAA	G	.	str_contraction	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=18.84;RPA=5,4;RU=GAA;STR;TLOD=7.13	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:69,3:0.042:1:2:.:2319,92:36:33	0/0:63,0:0.00:0:0:.:2154,0:32:31
chr21	43982279	.	TTC	T	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=58.24;RPA=6,5;RU=TC;STR;TLOD=5.69	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:303,4:7.828e-03:4:0:.:9958,136:150:143	0/0:223,1:2.457e-03:0:1:.:7171,34:102:113
chr21	44550195	rs8131923	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=10.14	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,3:0.750:3:0:1.00:29,97:1:0	0/0:5,0:0.00:0:0:.:160,0:2:3
chr21	44551102	.	T	C	.	alt_allele_in_normal;t_lod_fstar	ECNT=1;HCNT=8;MAX_ED=.;MIN_ED=.;NLOD=74.10;TLOD=4.02	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:328,4:0.013:2:2:0.500:10433,131:142:186	0/0:368,9:0.026:4:5:0.444:11795,296:161:207
chr21	44551198	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=5;HCNT=12;MAX_ED=81;MIN_ED=1;NLOD=29.39;TLOD=9.56	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:273,9:0.026:5:4:0.444:8294,286:135:138	0/0:320,18:0.057:11:7:0.389:9619,562:159:161
chr21	44551199	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=5;HCNT=12;MAX_ED=81;MIN_ED=1;NLOD=26.64;TLOD=20.11	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:282,11:0.039:6:5:0.545:8713,364:140:142	0/0:319,26:0.068:17:9:0.654:10016,862:159:160
chr21	44551225	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=5;HCNT=12;MAX_ED=81;MIN_ED=1;NLOD=38.00;TLOD=9.12	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:303,6:0.022:3:3:0.500:9053,188:150:153	0/0:356,20:0.053:13:7:0.350:10667,644:171:185
chr21	44551269	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=5;HCNT=9;MAX_ED=81;MIN_ED=1;NLOD=22.98;TLOD=15.04	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:239,14:0.041:4:10:0.286:8005,443:127:112	0/0:243,47:0.153:29:18:0.617:8122,1473:127:116
chr21	44551279	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=5;HCNT=18;MAX_ED=81;MIN_ED=1;NLOD=11.32;TLOD=34.71	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:217,19:0.070:5:14:0.737:6342,598:112:105	0/0:192,70:0.272:35:35:0.500:5641,2238:102:90
chr21	44551497	.	A	AGTGAGTGTGTGT	.	PASS	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=8.11;TLOD=16.02	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:105,39:0.203:0:1:.:2112,34:38:26	0/0:119,26:0.131:0:0:.:2614,0:50:28
chr21	44573789	.	A	G	.	alt_allele_in_normal	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=17.89;TLOD=29.06	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:211,17:0.082:6:11:0.647:6726,474:94:117	0/0:204,14:0.070:7:7:0.500:6618,383:89:115
chr21	44591870	.	T	C	.	alt_allele_in_normal	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=73.68;TLOD=6.81	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:352,7:0.021:3:4:0.429:10848,194:180:172	0/0:321,8:0.026:2:6:0.250:9857,250:155:166
chr21	44592357	.	T	G	.	PASS	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=3.92;TLOD=9.98	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:15,2:0.167:1:1:0.500:478,56:8:7	0/0:28,0:0.00:0:0:.:911,0:9:19
chr21	44601173	.	T	C	.	alt_allele_in_normal	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=10.39;TLOD=27.25	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:230,13:0.056:8:5:0.615:7207,441:123:107	0/0:245,17:0.066:10:7:0.588:7638,592:128:117
chr21	46284301	.	A	G	.	t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=49.01;TLOD=4.79	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:198,4:0.022:2:2:0.500:6328,105:103:95	0/0:174,0:0.00:0:0:.:5619,0:101:73
chr22	10752656	.	A	T	.	alt_allele_in_normal;clustered_events;germline_risk	ECNT=3;HCNT=18;MAX_ED=63;MIN_ED=15;NLOD=1.78;TLOD=7.24	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:26,3:0.103:2:1:0.333:883,100:17:9	0/0:31,2:0.061:2:0:0.00:1054,66:13:18
chr22	10752671	.	C	A	.	alt_allele_in_normal;clustered_events	ECNT=3;HCNT=15;MAX_ED=63;MIN_ED=15;NLOD=7.97;TLOD=7.07	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:19,3:0.130:2:1:0.333:648,102:12:7	0/0:45,2:0.043:1:1:0.500:1533,37:19:26
chr22	10752719	.	G	A	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=3;HCNT=16;MAX_ED=63;MIN_ED=15;NLOD=2.55;TLOD=4.83	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:39,3:0.075:3:0:1.00:1381,95:20:19	0/0:61,5:0.077:4:1:0.800:2179,159:31:30
chr22	10940654	.	C	A	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=2;HCNT=22;MAX_ED=4;MIN_ED=4;NLOD=18.83;TLOD=6.00	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:408,3:8.547e-03:2:1:0.333:0|1:10940654_C_A:14243,98:182:226	0/0:252,34:0.117:13:21:0.618:0|1:10940654_C_A:8856,1148:124:128
chr22	10940658	.	A	C	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=2;HCNT=22;MAX_ED=4;MIN_ED=4;NLOD=19.73;TLOD=6.01	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:398,3:8.596e-03:2:1:0.333:0|1:10940654_C_A:12671,104:177:221	0/0:253,33:0.116:13:20:0.606:0|1:10940654_C_A:8124,1162:124:129
chr22	10958954	.	G	T	.	alt_allele_in_normal;germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.918;TLOD=11.78	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:31,4:0.114:3:1:0.750:1086,130:10:21	0/0:25,1:0.038:1:0:1.00:871,34:11:14
chr22	11050454	.	C	A	.	alt_allele_in_normal	ECNT=1;HCNT=8;MAX_ED=.;MIN_ED=.;NLOD=15.28;TLOD=7.47	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:168,6:0.038:3:3:0.500:5792,209:90:78	0/0:197,24:0.102:16:8:0.333:6656,810:95:102
chr22	11066605	.	C	T	.	PASS	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=4.21;TLOD=7.69	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:12,3:0.176:2:1:0.333:402,97:4:8	0/0:14,0:0.00:0:0:.:465,0:8:6
chr22	11067156	.	C	T	.	germline_risk;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.602;TLOD=4.50	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:0,2:1.00:2:0:0.00:0,64:0:0	0/0:2,0:0.00:0:0:.:70,0:0:2
chr22	11067903	.	C	T	.	alt_allele_in_normal;germline_risk	ECNT=2;HCNT=1;MAX_ED=1;MIN_ED=1;NLOD=0.617;TLOD=6.74	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:9,2:0.182:0:2:1.00:0|1:11067903_C_T:294,68:1:8	0/0:17,1:0.059:1:0:0.00:0|1:11067903_C_T:566,34:11:6
chr22	11067904	.	GC	G	.	alt_allele_in_normal;germline_risk	ECNT=2;HCNT=1;MAX_ED=1;MIN_ED=1;NLOD=0.617;TLOD=6.65	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:9,2:0.167:0:2:.:0|1:11067903_C_T:250,74:1:8	0/0:17,1:0.059:1:0:.:0|1:11067903_C_T:461,37:11:6
chr22	11068041	.	C	T	.	alt_allele_in_normal;t_lod_fstar	ECNT=1;HCNT=3;MAX_ED=.;MIN_ED=.;NLOD=10.61;TLOD=5.20	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:65,3:0.048:3:0:0.00:2204,100:36:29	0/0:75,2:0.028:1:1:0.500:2507,68:38:37
chr22	11295672	.	T	A	.	germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=13.68	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:3,5:0.625:2:3:0.400:98,169:3:0	0/0:7,0:0.00:0:0:.:232,0:2:5
chr22	11624691	.	A	T	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=3;HCNT=6;MAX_ED=38;MIN_ED=36;NLOD=30.54;TLOD=5.53	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:235,7:0.019:5:2:0.286:7615,222:133:102	0/0:168,7:0.039:2:5:0.714:5505,217:90:78
chr22	11624727	.	G	T	.	alt_allele_in_normal;clustered_events	ECNT=3;HCNT=4;MAX_ED=38;MIN_ED=36;NLOD=31.98;TLOD=9.07	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:291,8:0.016:6:2:0.750:0|1:11624727_G_T:9093,272:156:135	0/0:211,9:0.038:3:6:0.333:0|1:11624727_G_T:6636,304:110:101
chr22	11624729	.	C	A	.	alt_allele_in_normal;clustered_events	ECNT=3;HCNT=4;MAX_ED=38;MIN_ED=36;NLOD=32.89;TLOD=9.10	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:294,8:0.016:6:2:0.250:0|1:11624727_G_T:10281,263:159:135	0/0:210,9:0.037:3:6:0.667:0|1:11624727_G_T:7347,304:107:103
chr22	12615393	.	CA	C	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=2;HCNT=15;MAX_ED=110;MIN_ED=110;NLOD=22.56;RPA=2,1;RU=A;STR;TLOD=5.72	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:164,5:0.031:3:2:.:5629,176:87:77	0/0:142,9:0.062:3:6:.:4940,326:75:67
chr22	12615503	.	T	C	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=2;HCNT=18;MAX_ED=110;MIN_ED=110;NLOD=7.05;TLOD=5.56	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:295,7:0.026:4:3:0.571:9345,243:159:136	0/0:224,17:0.078:7:10:0.412:7161,583:113:111
chr22	12693421	.	CAT	C	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=3;HCNT=3;MAX_ED=25;MIN_ED=3;NLOD=17.63;TLOD=5.54	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:64,4:0.049:0:4:.:0|1:12693421_CAT_C:2128,126:30:34	0/0:90,2:0.023:1:1:.:0|1:12693421_CAT_C:2922,63:35:55
chr22	12693424	.	G	GCA	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=3;HCNT=3;MAX_ED=25;MIN_ED=3;NLOD=17.33;TLOD=5.54	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:65,4:0.049:0:4:.:0|1:12693421_CAT_C:2115,126:31:34	0/0:90,2:0.023:1:1:.:0|1:12693421_CAT_C:2838,62:35:55
chr22	12693446	.	C	G	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=3;HCNT=3;MAX_ED=25;MIN_ED=3;NLOD=21.10;TLOD=5.03	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:89,1:0.028:1:0:0.00:3026,35:37:52	0/0:118,2:0.018:1:1:0.500:4054,71:49:69
chr22	12693612	.	A	G	.	alt_allele_in_normal;clustered_events;germline_risk	ECNT=6;HCNT=14;MAX_ED=112;MIN_ED=65;NLOD=1.47;TLOD=7.83	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:8,3:0.273:3:0:0.00:254,92:5:3	0/0:14,2:0.125:1:1:0.500:429,55:7:7
chr22	12693677	.	G	T	.	clustered_events;homologous_mapping_event;t_lod_fstar	ECNT=6;HCNT=2;MAX_ED=112;MIN_ED=65;NLOD=11.14;TLOD=5.53	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:40,2:0.049:0:2:0.00:1367,63:22:18	0/0:38,0:0.00:0:0:.:1263,0:21:17
chr22	12693688	.	C	T	.	clustered_events;homologous_mapping_event;t_lod_fstar	ECNT=6;HCNT=1;MAX_ED=112;MIN_ED=65;NLOD=15.65;TLOD=5.39	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:51,2:0.042:0:2:1.00:1604,58:30:21	0/0:52,0:0.00:0:0:.:1605,0:26:26
chr22	12693708	.	C	A	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=6;HCNT=2;MAX_ED=112;MIN_ED=65;NLOD=2.77;TLOD=5.16	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:72,2:0.032:0:2:1.00:2477,65:42:30	0/0:71,4:0.052:1:3:0.750:2394,129:34:37
chr22	12693716	.	G	GC	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=6;HCNT=12;MAX_ED=112;MIN_ED=65;NLOD=3.06;RPA=1,2;RU=C;STR;TLOD=5.17	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:51,1:0.020:0:1:.:1725,35:26:25	0/0:60,2:0.025:1:1:.:2057,69:28:32
chr22	12693724	.	T	C	.	alt_allele_in_normal;clustered_events	ECNT=6;HCNT=4;MAX_ED=112;MIN_ED=65;NLOD=11.71;TLOD=14.61	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:75,5:0.069:4:1:0.800:2384,178:35:40	0/0:78,3:0.026:2:1:0.667:2431,106:37:41
chr22	12693728	.	C	T	.	clustered_events;multi_event_alt_allele_in_normal;t_lod_fstar;triallelic_site	ECNT=7;HCNT=1;MAX_ED=45;MIN_ED=4;NLOD=9.66;TLOD=5.22	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:50,2:0.022:0:0:.:1730,0:28:22	0/0:67,2:0.015:0:0:.:2295,0:31:36
chr22	12693732	.	C	A	.	alt_allele_in_normal;clustered_events;germline_risk	ECNT=7;HCNT=6;MAX_ED=45;MIN_ED=4;NLOD=0.964;TLOD=22.33	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:41,8:0.080:7:1:0.125:0|1:12693732_C_A:1356,262:18:21	0/0:63,4:0.031:2:2:0.500:0|1:12693732_C_A:2077,126:28:33
chr22	12693733	.	T	C	.	alt_allele_in_normal;clustered_events;germline_risk	ECNT=7;HCNT=6;MAX_ED=45;MIN_ED=4;NLOD=0.964;TLOD=22.33	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:39,8:0.080:7:1:0.875:0|1:12693732_C_A:1209,254:18:19	0/0:62,4:0.031:2:2:0.500:0|1:12693732_C_A:1924,126:28:32
chr22	12693738	.	T	A	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=7;HCNT=4;MAX_ED=45;MIN_ED=4;NLOD=3.64;TLOD=5.69	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:28,3:0.036:2:1:0.667:899,96:16:12	0/0:42,2:0.023:1:1:0.500:1339,67:21:21
chr22	12693742	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=7;HCNT=7;MAX_ED=45;MIN_ED=4;NLOD=2.47;TLOD=8.63	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:36,2:0.038:1:1:0.500:1143,68:23:13	0/0:51,3:0.028:1:2:0.333:1596,98:27:24
chr22	12693752	.	C	A	.	alt_allele_in_normal;clustered_events	ECNT=7;HCNT=8;MAX_ED=45;MIN_ED=4;NLOD=4.85;TLOD=19.73	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:33,5:0.154:4:1:0.200:1123,148:20:13	0/0:48,2:0.042:1:1:0.500:1625,57:23:25
chr22	12693773	.	G	A	.	clustered_events;homologous_mapping_event;t_lod_fstar	ECNT=7;HCNT=5;MAX_ED=45;MIN_ED=4;NLOD=7.81;TLOD=5.90	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:23,2:0.074:0:2:0.00:706,65:13:10	0/0:28,0:0.00:0:0:.:900,0:15:13
chr22	15613040	.	G	T	.	clustered_events;t_lod_fstar	ECNT=2;HCNT=8;MAX_ED=22;MIN_ED=22;NLOD=6.32;TLOD=4.55	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:50,1:0.045:1:0:1.00:0|1:15613040_G_T:1730,32:18:32	0/0:21,0:0.00:0:0:.:0|1:15613040_G_T:704,0:11:10
chr22	15613062	.	C	A	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=2;HCNT=8;MAX_ED=22;MIN_ED=22;NLOD=3.15;TLOD=4.68	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:42,2:0.053:2:0:0.00:0|1:15613040_G_T:1462,62:17:25	0/0:24,1:0.045:0:1:1.00:0|1:15613040_G_T:816,30:15:9
chr22	15631497	.	CTAGT	C	.	t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=6.01;TLOD=5.78	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:29,2:0.065:1:1:.:991,72:13:16	0/0:20,0:0.00:0:0:.:679,0:9:11
chr22	15721536	.	G	T	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=7.52;TLOD=4.95	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:22,3:0.120:2:1:0.667:749,97:12:10	0/0:112,0:0.00:0:0:.:3805,0:52:60
chr22	15854799	.	G	T	.	alt_allele_in_normal	ECNT=1;HCNT=8;MAX_ED=.;MIN_ED=.;NLOD=10.07;TLOD=14.06	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:45,8:0.151:5:3:0.625:1493,253:19:26	0/0:101,3:0.031:1:2:0.333:3428,99:51:50
chr22	16197117	.	G	T	.	germline_risk;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=5.09	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:9,2:0.182:2:0:1.00:259,64:3:6	0/0:7,0:0.00:0:0:.:201,0:4:3
chr22	16428893	.	T	A	.	alt_allele_in_normal;t_lod_fstar	ECNT=2;HCNT=4;MAX_ED=1;MIN_ED=1;NLOD=4.23;TLOD=6.13	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:19,2:0.095:2:0:1.00:0|1:16428893_T_A:626,66:10:9	0/0:27,1:0.034:0:1:0.00:0|1:16428893_T_A:892,34:10:17
chr22	16428894	.	TG	T	.	alt_allele_in_normal;t_lod_fstar	ECNT=2;HCNT=4;MAX_ED=1;MIN_ED=1;NLOD=4.22;TLOD=6.13	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:19,2:0.095:2:0:.:0|1:16428893_T_A:628,66:10:9	0/0:28,1:0.034:0:1:.:0|1:16428893_T_A:930,33:10:18
chr22	16473874	.	G	T	.	germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=6.63	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:5,3:0.375:1:2:0.333:181,97:1:4	0/0:5,0:0.00:0:0:.:177,0:3:2
chr22	17727099	.	C	T	.	t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=36.53;TLOD=5.58	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:114,3:0.028:2:1:0.333:3815,101:54:60	0/0:131,0:0.00:0:0:.:4303,0:61:70
chr22	17980804	.	C	A	.	t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=58.09;TLOD=4.02	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:215,3:0.016:1:2:0.667:7372,94:117:98	0/0:225,0:0.00:0:0:.:7734,0:129:96
chr22	18511942	.	C	CT	.	alt_allele_in_normal;t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=2.41;TLOD=5.45	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:5,2:0.286:0:2:.:136,71:2:3	0/0:26,2:0.074:1:1:.:737,64:13:13
chr22	18536667	.	T	TC	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.51;TLOD=4.75	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:32,2:0.071:2:0:.:993,68:16:16	0/0:22,0:0.00:0:0:.:720,0:12:10
chr22	19470014	.	G	T	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.02;TLOD=4.11	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:41,2:0.050:2:0:1.00:1402,66:22:19	0/0:21,0:0.00:0:0:.:722,0:16:5
chr22	20142917	.	T	C	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=10.53;TLOD=4.21	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:20,2:0.091:2:0:1.00:666,64:11:9	0/0:35,0:0.00:0:0:.:1123,0:16:19
chr22	20564529	.	ACAG	A	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=10.74;RPA=7,6;RU=CAG;STR;TLOD=5.46	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:23,2:0.080:1:1:.:707,62:10:13	0/0:36,0:0.00:0:0:.:1100,0:16:20
chr22	20606822	rs13340098	C	T	.	germline_risk;t_lod_fstar	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=5.99	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:3,2:0.400:1:1:0.500:106,65:2:1	0/0:6,0:0.00:0:0:.:208,0:2:4
chr22	20718654	.	G	C	.	alt_allele_in_normal;clustered_events	ECNT=3;HCNT=1;MAX_ED=6;MIN_ED=1;NLOD=9.68;TLOD=7.65	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:106,3:0.030:2:1:0.667:0|1:20718654_G_C:3712,97:59:47	0/0:83,2:0.039:2:0:1.00:0|1:20718654_G_C:2895,70:45:38
chr22	20718655	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=3;HCNT=1;MAX_ED=6;MIN_ED=1;NLOD=10.88;TLOD=7.64	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:107,3:0.030:2:1:0.667:0|1:20718654_G_C:3677,96:59:48	0/0:83,3:0.037:3:0:1.00:0|1:20718654_G_C:2898,95:45:38
chr22	20718660	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=3;HCNT=1;MAX_ED=6;MIN_ED=1;NLOD=12.09;TLOD=9.60	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:112,4:0.038:3:1:0.250:0|1:20718654_G_C:3876,128:63:49	0/0:93,2:0.035:2:0:0.00:0|1:20718654_G_C:3257,67:50:43
chr22	22117851	.	G	A	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=2;HCNT=3;MAX_ED=10;MIN_ED=10;NLOD=3.03;TLOD=5.62	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:34,2:0.054:2:0:1.00:0|1:22117851_G_A:1143,63:15:19	0/0:24,2:0.077:2:0:1.00:0|1:22117851_G_A:807,65:9:15
chr22	22117861	.	C	T	.	alt_allele_in_normal;clustered_events;germline_risk;t_lod_fstar	ECNT=2;HCNT=3;MAX_ED=10;MIN_ED=10;NLOD=1.52;TLOD=5.94	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:24,2:0.077:2:0:0.00:0|1:22117851_G_A:770,61:8:16	0/0:19,2:0.091:2:0:0.00:0|1:22117851_G_A:584,61:8:11
chr22	22664490	.	C	A	.	t_lod_fstar	ECNT=2;HCNT=1;MAX_ED=1;MIN_ED=1;NLOD=3.91;TLOD=6.22	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:19,2:0.105:2:0:0.00:0|1:22664490_C_A:611,64:9:10	0/0:12,0:0.00:0:0:.:0|1:22664490_C_A:416,0:4:8
chr22	22664491	.	C	T	.	t_lod_fstar	ECNT=2;HCNT=1;MAX_ED=1;MIN_ED=1;NLOD=3.91;TLOD=6.18	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:18,2:0.100:2:0:0.00:0|1:22664490_C_A:572,66:9:9	0/0:13,0:0.00:0:0:.:0|1:22664490_C_A:436,0:5:8
chr22	22901058	.	T	C	.	clustered_events;t_lod_fstar	ECNT=2;HCNT=1;MAX_ED=3;MIN_ED=3;NLOD=21.97;TLOD=4.97	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:81,2:0.026:1:1:0.500:0|1:22901058_T_C:2497,69:44:37	0/0:106,0:0.00:0:0:.:0|1:22901058_T_C:3336,0:41:65
chr22	22901061	.	C	G	.	clustered_events;t_lod_fstar	ECNT=2;HCNT=1;MAX_ED=3;MIN_ED=3;NLOD=21.97;TLOD=4.97	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:80,2:0.026:1:1:0.500:0|1:22901058_T_C:2811,62:42:38	0/0:104,0:0.00:0:0:.:0|1:22901058_T_C:3650,0:39:65
chr22	23312781	.	G	C	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=2;HCNT=2;MAX_ED=25;MIN_ED=25;NLOD=2.94;TLOD=5.92	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:34,3:0.081:2:1:0.667:956,102:21:13	0/0:22,1:0.043:0:1:0.00:618,35:10:12
chr22	23312806	.	A	G	.	alt_allele_in_normal;clustered_events;germline_risk;t_lod_fstar	ECNT=2;HCNT=2;MAX_ED=25;MIN_ED=25;NLOD=0.828;TLOD=4.09	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:54,3:0.056:2:1:0.333:1719,85:31:23	0/0:33,3:0.086:1:2:0.667:1014,84:15:18
chr22	24183473	.	CCCA	C	.	alt_allele_in_normal;str_contraction;t_lod_fstar	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=8.46;RPA=4,3;RU=CCA;STR;TLOD=4.16	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:217,3:7.673e-03:1:2:.:7139,85:106:99	0/0:141,8:0.026:3:5:.:4584,280:67:67
chr22	25722345	.	C	A	.	clustered_events;homologous_mapping_event;t_lod_fstar	ECNT=3;HCNT=4;MAX_ED=4;MIN_ED=3;NLOD=45.14;TLOD=4.38	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:161,2:0.013:2:0:0.00:0|1:25722345_C_A:5415,60:96:65	0/0:159,0:0.00:0:0:.:0|1:25722345_C_A:5314,0:73:86
chr22	25722348	.	G	C	.	clustered_events;homologous_mapping_event;t_lod_fstar	ECNT=3;HCNT=4;MAX_ED=4;MIN_ED=3;NLOD=46.36;TLOD=4.37	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:150,2:0.013:2:0:1.00:0|1:25722345_C_A:5140,68:89:61	0/0:149,0:0.00:0:0:.:0|1:25722345_C_A:5051,0:68:81
chr22	25722349	.	CGG	C	.	clustered_events;homologous_mapping_event;t_lod_fstar	ECNT=3;HCNT=4;MAX_ED=4;MIN_ED=3;NLOD=46.05;TLOD=4.39	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:150,2:0.013:2:0:.:0|1:25722345_C_A:4402,67:87:63	0/0:152,0:0.00:0:0:.:0|1:25722345_C_A:4427,0:70:82
chr22	25890831	.	C	T	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=14.09;TLOD=4.03	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:52,2:0.045:0:2:1.00:1549,66:30:22	0/0:53,0:0.00:0:0:.:1577,0:40:13
chr22	27410541	rs79554	T	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=8.38	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:8,3:0.300:1:2:0.333:262,96:5:3	0/0:6,0:0.00:0:0:.:197,0:0:6
chr22	29661223	.	C	A	.	t_lod_fstar	ECNT=1;HCNT=12;MAX_ED=.;MIN_ED=.;NLOD=54.48;TLOD=4.11	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:189,3:0.018:3:0:0.00:6551,92:109:80	0/0:201,0:0.00:0:0:.:7008,0:115:86
chr22	30046365	.	T	G	.	alt_allele_in_normal;clustered_events;germline_risk	ECNT=4;HCNT=6;MAX_ED=25;MIN_ED=10;NLOD=1.85;TLOD=8.14	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:65,3:0.043:1:2:0.333:0|1:30046365_T_G:1992,104:39:26	0/0:45,3:0.059:2:1:0.667:0|1:30046365_T_G:1392,96:18:27
chr22	30046375	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=4;HCNT=6;MAX_ED=25;MIN_ED=10;NLOD=4.26;TLOD=8.08	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:69,3:0.042:1:2:0.333:0|1:30046365_T_G:2327,99:40:29	0/0:55,3:0.051:2:1:0.667:0|1:30046365_T_G:1845,97:24:31
chr22	30046385	.	G	T	.	alt_allele_in_normal;clustered_events	ECNT=4;HCNT=6;MAX_ED=25;MIN_ED=10;NLOD=4.26;TLOD=8.01	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:75,3:0.039:1:2:0.333:0|1:30046365_T_G:2550,94:43:32	0/0:61,3:0.051:2:1:0.667:0|1:30046365_T_G:2067,77:26:35
chr22	30046390	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=4;HCNT=6;MAX_ED=25;MIN_ED=10;NLOD=3.67;TLOD=8.08	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:73,3:0.042:1:2:0.333:0|1:30046365_T_G:2173,97:41:32	0/0:59,3:0.053:2:1:0.667:0|1:30046365_T_G:1762,96:25:34
chr22	30623247	.	G	GC	.	germline_risk	ECNT=2;HCNT=1;MAX_ED=1;MIN_ED=1;NLOD=1.21;TLOD=13.50	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:0,3:1.00:1:2:.:0|1:30623247_G_GC:0,99:0:0	0/0:4,0:0.00:0:0:.:0|1:30623247_G_GC:129,0:3:1
chr22	30623248	.	A	C	.	germline_risk	ECNT=2;HCNT=1;MAX_ED=1;MIN_ED=1;NLOD=1.20;TLOD=13.50	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:0,3:1.00:1:2:0.667:0|1:30623247_G_GC:0,105:0:0	0/0:4,0:0.00:0:0:.:0|1:30623247_G_GC:130,0:3:1
chr22	31343037	.	TAC	T	.	str_contraction	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.86;RPA=8,7;RU=AC;STR;TLOD=7.33	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:33,4:0.108:0:4:.:970,121:14:19	0/0:33,1:0.029:0:1:.:1029,2:12:21
chr22	31712102	.	T	C	.	t_lod_fstar	ECNT=1;HCNT=5;MAX_ED=.;MIN_ED=.;NLOD=31.30;TLOD=4.02	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:123,2:0.018:1:1:0.500:4133,67:65:58	0/0:116,0:0.00:0:0:.:3908,0:56:60
chr22	31798714	.	G	A	.	t_lod_fstar	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.02;TLOD=4.91	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:10,2:0.167:1:1:0.500:341,63:5:5	0/0:20,0:0.00:0:0:.:672,0:8:12
chr22	31906626	.	TTTTG	T	.	str_contraction	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.85;RPA=7,6;RU=TTTG;STR;TLOD=6.36	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:15,2:0.118:1:1:.:517,68:9:6	0/0:10,0:0.00:0:0:.:334,0:8:2
chr22	35284117	.	C	CA	.	t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=5.72;TLOD=4.27	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:23,2:0.080:2:0:.:791,59:9:14	0/0:19,0:0.00:0:0:.:666,0:8:11
chr22	36204601	rs1812024	A	G	.	germline_risk;t_lod_fstar	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=5.13	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:8,2:0.200:2:0:0.00:252,68:6:2	0/0:4,0:0.00:0:0:.:134,0:2:2
chr22	36288299	.	C	T	.	t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=45.45;TLOD=4.37	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:179,3:0.017:1:2:0.667:6044,95:91:88	0/0:155,0:0.00:0:0:.:5272,0:84:71
chr22	36300901	.	GCTC	G	.	alt_allele_in_normal;str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=26.76;RPA=5,4;RU=CTC;STR;TLOD=4.44	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:157,2:0.014:2:0:.:4637,63:91:66	0/0:125,2:0.017:1:1:.:3739,58:69:56
chr22	36930193	.	ACT	A	.	str_contraction	ECNT=1;HCNT=48;MAX_ED=.;MIN_ED=.;NLOD=11.70;RPA=8,7;RU=CT;STR;TLOD=6.82	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:39,4:0.093:2:2:.:1291,138:22:17	0/0:39,0:0.00:0:0:.:1297,0:19:20
chr22	37071230	rs5756504	C	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=6.82	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,2:0.667:0:2:1.00:36,67:0:1	0/0:4,0:0.00:0:0:.:140,0:4:0
chr22	37182608	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=22.27;TLOD=4.39	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:102,3:0.030:2:1:0.667:3396,88:52:50	0/0:82,0:0.00:0:0:.:2756,0:30:52
chr22	39031671	.	CCCT	C	.	alt_allele_in_normal;str_contraction	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=58.22;RPA=5,4;RU=CCT;STR;TLOD=14.97	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:240,7:0.026:2:5:.:8150,245:116:124	0/0:283,2:7.722e-03:0:2:.:9593,71:126:157
chr22	39052051	.	CCCT	C	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=54.05;RPA=5,4;RU=CCT;STR;TLOD=4.03	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:247,3:0.014:2:1:.:8429,72:128:119	0/0:245,1:4.762e-03:0:1:.:8278,33:115:130
chr22	39670868	.	A	C	.	alt_allele_in_normal;t_lod_fstar	ECNT=1;HCNT=12;MAX_ED=.;MIN_ED=.;NLOD=26.37;TLOD=5.23	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:212,32:0.123:22:10:0.313:6225,347:95:117	0/0:188,22:0.112:12:10:0.455:5289,204:84:104
chr22	40322790	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=9.62;TLOD=4.03	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:26,2:0.071:2:0:1.00:717,62:15:11	0/0:32,0:0.00:0:0:.:889,0:17:15
chr22	40835571	.	C	A	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=2;HCNT=10;MAX_ED=3;MIN_ED=3;NLOD=48.01;TLOD=5.00	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:209,2:0.016:1:1:0.500:0|1:40835571_C_A:7255,56:99:110	0/0:229,6:0.036:5:1:0.167:0|1:40835571_C_A:7977,185:116:113
chr22	40835574	.	C	T	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=2;HCNT=10;MAX_ED=3;MIN_ED=3;NLOD=47.71;TLOD=5.01	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:214,3:0.016:1:2:0.667:0|1:40835571_C_A:7113,96:99:115	0/0:235,8:0.037:7:1:0.125:0|1:40835571_C_A:8003,257:119:116
chr22	41254464	.	TTCC	T	.	alt_allele_in_normal;str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.64;RPA=5,4;RU=TCC;STR;TLOD=6.28	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:134,3:0.023:3:0:.:4415,96:65:69	0/0:124,8:0.064:5:3:.:4060,266:72:52
chr22	41274741	.	A	G	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=20.47;TLOD=4.03	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:92,2:0.023:1:1:0.500:3098,72:54:38	0/0:77,0:0.00:0:0:.:2631,0:31:46
chr22	42601938	.	TTC	T	.	alt_allele_in_normal;str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.32;RPA=8,7;RU=TC;STR;TLOD=5.91	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:93,4:0.045:2:2:.:2970,130:52:41	0/0:59,4:0.066:2:2:.:1902,123:29:30
chr22	43129238	.	CGCT	C	.	str_contraction	ECNT=1;HCNT=3;MAX_ED=.;MIN_ED=.;NLOD=27.87;RPA=5,4;RU=GCT;STR;TLOD=9.85	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:105,5:0.040:5:0:.:2996,150:51:54	0/0:107,0:0.00:0:0:.:3087,0:66:41
chr22	43220403	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=29.99;TLOD=5.15	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:124,3:0.025:1:2:0.333:3503,98:59:65	0/0:107,0:0.00:0:0:.:3028,0:53:54
chr22	50609631	rs965618	A	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=15.02	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,4:0.800:3:1:0.250:34,142:1:0	0/0:4,0:0.00:0:0:.:132,0:2:2
chr22	50798936	.	A	G	.	clustered_events;t_lod_fstar	ECNT=2;HCNT=4;MAX_ED=12;MIN_ED=12;NLOD=18.66;TLOD=4.29	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:44,4:0.089:3:1:0.250:1387,110:19:25	0/0:103,0:0.00:0:0:.:3203,0:50:53
chr22	50798948	.	A	C	.	clustered_events	ECNT=2;HCNT=4;MAX_ED=12;MIN_ED=12;NLOD=17.15;TLOD=9.76	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:31,7:0.189:6:1:0.143:977,231:17:14	0/0:101,0:0.00:0:0:.:3157,0:47:54
chrX	1386568	.	GGT	G	.	alt_allele_in_normal;str_contraction	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=11.56;RPA=8,7;RU=GT;STR;TLOD=8.45	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:176,10:0.042:4:6:.:6095,357:95:81	0/0:93,5:0.055:0:5:.:3245,182:52:41
chrX	1435877	.	A	G	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.01;TLOD=5.00	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:13,2:0.133:1:1:0.500:402,66:6:7	0/0:10,0:0.00:0:0:.:332,0:6:4
chrX	1466186	.	C	T	.	alt_allele_in_normal	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.45;TLOD=52.95	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:18,18:0.514:13:5:0.278:611,549:12:6	0/0:22,1:0.043:0:1:1.00:750,30:11:11
chrX	2960339	.	A	G	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=8.73;TLOD=4.12	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:54,2:0.036:1:1:0.500:1723,69:26:28	0/0:29,0:0.00:0:0:.:947,0:14:15
chrX	3829199	.	G	A	.	germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=8.59	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:8,4:0.333:2:2:0.500:240,129:3:5	0/0:9,0:0.00:0:0:.:269,0:7:2
chrX	8570796	.	G	A	.	germline_risk;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=4.67	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:7,2:0.222:1:1:0.500:242,58:4:3	0/0:4,0:0.00:0:0:.:134,0:3:1
chrX	9688139	.	TGCG	T	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.36;RPA=5,4;RU=GCG;STR;TLOD=6.10	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:23,3:0.091:1:2:.:683,94:13:10	0/0:18,0:0.00:0:0:.:542,0:7:11
chrX	10220818	.	A	G	.	t_lod_fstar	ECNT=1;HCNT=48;MAX_ED=.;MIN_ED=.;NLOD=42.13;TLOD=4.89	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:293,3:0.011:2:1:0.333:9572,107:135:158	0/0:154,0:0.00:0:0:.:5026,0:77:77
chrX	13378717	.	CG	C	.	alt_allele_in_normal;germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.03;RPA=4,3;RU=G;STR;TLOD=45.40	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:19,22:0.500:12:10:.:617,700:8:11	0/0:22,1:0.048:1:0:.:703,35:10:12
chrX	13749599	rs7878592	A	G	.	germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=2.71;TLOD=32.45	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:10,10:0.500:4:6:0.600:321,337:5:5	0/0:9,0:0.00:0:0:.:284,0:2:7
chrX	15244691	.	T	TGG	.	PASS	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.43;TLOD=14.22	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:17,14:0.405:1:0:.:20,31:1:0	0/0:16,1:0.043:0:0:.:0,0:0:0
chrX	17728549	.	CTGTT	C	.	str_contraction	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=8.97;RPA=7,6;RU=TGTT;STR;TLOD=14.43	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:63,5:0.079:4:1:.:2162,178:45:18	0/0:30,0:0.00:0:0:.:1054,0:18:12
chrX	20136231	.	GCA	G	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.61;RPA=7,6;RU=CA;STR;TLOD=4.73	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:16,3:0.158:3:0:.:544,97:6:10	0/0:12,0:0.00:0:0:.:411,0:7:5
chrX	21516391	.	A	AC	.	alt_allele_in_normal;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=8.26;RPA=1,2;RU=C;STR;TLOD=5.81	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:27,25:0.500:17:8:.:873,757:19:8	0/0:30,1:0.032:1:0:.:963,33:13:17
chrX	21526786	.	A	ATTG	.	alt_allele_in_normal	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=6.17;RPA=10,11;RU=TTG;STR;TLOD=22.39	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:32,27:0.475:19:8:.:1013,843:14:18	0/0:43,4:0.122:3:1:.:1359,130:20:23
chrX	21609467	.	C	A	.	PASS	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=16.25;TLOD=9.34	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:130,5:0.043:2:3:0.600:4448,159:57:73	0/0:57,0:0.00:0:0:.:1936,0:30:27
chrX	22212677	rs5904513	A	G	.	germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=8.15	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:0,2:1.00:2:0:0.00:0,72:0:0	0/0:4,0:0.00:0:0:.:134,0:2:2
chrX	22221440	rs3752432	T	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=9.31	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:3,3:0.500:2:1:0.667:100,98:1:2	0/0:5,0:0.00:0:0:.:169,0:4:1
chrX	23682576	rs795489	A	G	.	germline_risk	DB;ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=3.91;TLOD=49.21	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:18,17:0.471:9:8:0.471:580,560:8:10	0/0:13,0:0.00:0:0:.:424,0:4:9
chrX	24742159	.	ACC	A	.	PASS	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.52;RPA=12,10;RU=C;STR;TLOD=7.12	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:16,9:0.333:3:5:.:0,233:0:0	0/0:23,0:0.048:0:0:.:23,0:0:1
chrX	30218541	rs6526962	T	C	.	PASS	DB;ECNT=1;HCNT=3;MAX_ED=.;MIN_ED=.;NLOD=6.02;TLOD=70.47	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:20,23:0.553:11:12:0.478:640,789:9:11	0/0:23,0:0.00:0:0:.:743,0:14:9
chrX	30665435	.	T	C	.	germline_risk;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=4.55	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:6,2:0.250:1:1:0.500:204,56:2:4	0/0:4,0:0.00:0:0:.:134,0:0:4
chrX	32595986	rs808543	C	T	.	germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=11.29	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:8,4:0.333:1:3:0.750:283,127:4:4	0/0:4,0:0.00:0:0:.:131,0:4:0
chrX	34147284	rs5928433	C	G	.	PASS	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.01;TLOD=19.69	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:14,7:0.350:5:2:0.286:486,220:5:9	0/0:9,0:0.00:0:0:.:310,0:5:4
chrX	35803185	rs4829393	C	G	.	clustered_events;germline_risk	DB;ECNT=2;HCNT=1;MAX_ED=6;MIN_ED=6;NLOD=1.81;TLOD=39.38	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:6,10:0.625:4:6:0.600:0|1:35803185_C_G:205,343:3:3	0/0:7,0:0.00:0:0:.:0|1:35803185_C_G:233,0:3:4
chrX	35803191	.	C	T	.	clustered_events;germline_risk	ECNT=2;HCNT=1;MAX_ED=6;MIN_ED=6;NLOD=1.81;TLOD=35.74	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:7,9:0.563:4:5:0.556:0|1:35803185_C_G:244,292:4:3	0/0:6,0:0.00:0:0:.:0|1:35803185_C_G:210,0:2:4
chrX	36071847	.	G	C	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=8.13;TLOD=4.40	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:50,2:0.044:1:1:0.500:1723,70:26:24	0/0:31,0:0.00:0:0:.:1097,0:19:12
chrX	37009308	.	G	T	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=30.10;TLOD=4.18	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:181,3:0.018:1:2:0.333:6326,93:96:85	0/0:107,0:0.00:0:0:.:3763,0:56:51
chrX	37505546	rs36081124	C	A	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.34;TLOD=55.44	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:30,21:0.413:8:13:0.619:916,666:15:15	0/0:16,1:0.059:0:1:1.00:489,33:7:9
chrX	37801310	.	C	T	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=39.37;TLOD=4.56	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:260,3:0.014:1:2:0.667:8074,100:143:117	0/0:151,0:0.00:0:0:.:4649,0:84:67
chrX	37946444	rs4140769	A	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=7.02	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,2:0.667:2:0:0.00:64,69:0:2	0/0:6,0:0.00:0:0:.:197,0:5:1
chrX	40714073	rs45526636	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=16.91	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,5:0.833:4:1:0.800:35,157:0:1	0/0:4,0:0.00:0:0:.:139,0:3:1
chrX	41472177	.	A	G	.	PASS	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.41;TLOD=19.64	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,6:0.600:3:3:0.500:132,197:1:3	0/0:8,0:0.00:0:0:.:258,0:5:3
chrX	46457139	rs5952884	G	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=22.71	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:14,9:0.368:3:6:0.333:489,318:9:5	0/0:8,0:0.00:0:0:.:283,0:3:5
chrX	46725073	rs12842811	C	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=11.03	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:10,4:0.286:2:2:0.500:334,128:3:7	0/0:4,0:0.00:0:0:.:136,0:2:2
chrX	47091605	rs5906327	G	T	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.84;TLOD=69.63	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:16,21:0.568:13:8:0.619:456,706:12:4	0/0:18,1:0.053:1:0:1.00:504,34:5:13
chrX	47570766	rs2858769	C	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.71;TLOD=11.78	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:7,4:0.364:2:2:0.500:241,130:3:4	0/0:9,0:0.00:0:0:.:306,0:6:3
chrX	47841519	rs112688110	C	T	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=4.75;TLOD=77.12	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:28,29:0.500:19:10:0.345:909,896:14:14	0/0:27,2:0.037:0:2:1.00:941,64:10:17
chrX	47915159	.	C	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.12;TLOD=4.18	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:33,2:0.061:1:1:0.500:1148,65:21:12	0/0:17,0:0.00:0:0:.:590,0:10:7
chrX	48244993	.	G	A	.	germline_risk	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=11.32	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:6,4:0.400:2:2:0.500:196,129:2:4	0/0:4,0:0.00:0:0:.:136,0:2:2
chrX	48281189	.	T	C	.	clustered_events;multi_event_alt_allele_in_normal	ECNT=3;HCNT=1;MAX_ED=10;MIN_ED=2;NLOD=5.43;TLOD=8.66	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:46,3:0.064:2:1:0.667:0|1:48281189_T_C:1441,107:28:18	0/0:35,1:0.029:1:0:1.00:0|1:48281189_T_C:1078,37:21:14
chrX	48281191	.	C	T	.	clustered_events;multi_event_alt_allele_in_normal	ECNT=3;HCNT=1;MAX_ED=10;MIN_ED=2;NLOD=5.43;TLOD=8.55	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:45,3:0.059:2:1:0.333:0|1:48281189_T_C:1293,99:26:19	0/0:33,1:0.029:1:0:0.00:0|1:48281189_T_C:965,34:20:13
chrX	48281199	.	A	T	.	alt_allele_in_normal;clustered_events	ECNT=3;HCNT=1;MAX_ED=10;MIN_ED=2;NLOD=3.93;TLOD=8.66	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:46,3:0.064:2:1:0.333:0|1:48281189_T_C:1498,104:29:17	0/0:29,1:0.033:1:0:0.00:0|1:48281189_T_C:955,35:19:10
chrX	48358780	.	G	A	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=3;HCNT=4;MAX_ED=9;MIN_ED=7;NLOD=6.34;TLOD=4.78	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:96,2:0.021:0:2:0.00:0|1:48358780_G_A:3355,66:52:44	0/0:35,2:0.054:1:1:0.500:0|1:48358780_G_A:1198,70:17:18
chrX	48358787	.	G	A	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=3;HCNT=4;MAX_ED=9;MIN_ED=7;NLOD=6.03;TLOD=4.81	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:89,2:0.022:0:2:0.00:0|1:48358780_G_A:3052,65:49:40	0/0:32,2:0.056:1:1:0.500:0|1:48358780_G_A:1074,66:16:16
chrX	48358789	.	T	A	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=3;HCNT=4;MAX_ED=9;MIN_ED=7;NLOD=5.43;TLOD=4.84	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:86,2:0.022:0:2:0.00:0|1:48358780_G_A:2929,66:50:36	0/0:29,2:0.059:1:1:0.500:0|1:48358780_G_A:976,66:15:14
chrX	48447667	.	C	T	.	alt_allele_in_normal	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=6.63;TLOD=33.21	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:107,17:0.128:9:8:0.471:3601,556:50:57	0/0:59,4:0.065:2:2:0.500:2039,135:24:35
chrX	48466138	.	C	T	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.31;TLOD=4.54	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:20,2:0.091:1:1:0.500:684,65:12:8	0/0:11,0:0.00:0:0:.:370,0:5:6
chrX	48974255	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.92;TLOD=6.28	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:44,3:0.073:3:0:1.00:1336,95:23:21	0/0:25,0:0.00:0:0:.:804,0:13:12
chrX	49221017	.	C	T	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=7.78;TLOD=4.13	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:36,3:0.057:0:3:1.00:1224,95:13:23	0/0:30,0:0.00:0:0:.:997,0:13:17
chrX	49248354	rs2280882	T	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.64;TLOD=14.86	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:14,9:0.333:7:2:0.778:389,244:12:2	0/0:9,0:0.00:0:0:.:218,0:8:1
chrX	49305562	.	CGT	C	.	alt_allele_in_normal;str_contraction;t_lod_fstar	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=9.89;RPA=6,5;RU=GT;STR;TLOD=4.01	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:38,2:0.053:1:1:.:1036,57:22:16	0/0:243,3:0.013:1:2:.:6373,82:125:118
chrX	49323901	.	CGT	C	.	alt_allele_in_normal;clustered_events;str_contraction;t_lod_fstar	ECNT=3;HCNT=6;MAX_ED=29;MIN_ED=14;NLOD=40.30;RPA=6,5;RU=GT;STR;TLOD=4.76	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:172,4:0.025:2:2:.:4312,69:101:71	0/0:309,9:0.029:6:3:.:7996,226:182:127
chrX	49323915	.	CGT	C	.	alt_allele_in_normal;clustered_events;str_contraction	ECNT=3;HCNT=5;MAX_ED=29;MIN_ED=14;NLOD=62.82;RPA=6,5;RU=GT;STR;TLOD=13.93	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:190,8:0.021:6:2:.:4603,228:103:83	0/0:271,5:7.678e-03:2:3:.:6526,148:159:98
chrX	49323930	.	ATGTGTG	A	.	alt_allele_in_normal;clustered_events;triallelic_site	ECNT=3;HCNT=3;MAX_ED=29;MIN_ED=14;NLOD=11.49;RPA=14,11;RU=TG;STR;TLOD=13.94	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:115,32:0.053:1:4:.:1913,161:29:33	0/0:135,20:0.031:3:1:.:2309,128:42:32
chrX	49328577	.	T	C	.	alt_allele_in_normal;germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.602;TLOD=9.31	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,4:0.800:2:2:0.500:31,137:1:0	0/0:31,1:0.031:1:0:1.00:1000,35:18:13
chrX	49345735	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=3;HCNT=3;MAX_ED=16;MIN_ED=7;NLOD=47.06;TLOD=7.86	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:493,4:7.874e-03:2:2:0.500:0|1:49345735_C_T:17140,129:289:204	0/0:434,7:0.015:3:4:0.571:0|1:49345735_C_T:15164,235:237:197
chrX	49345742	.	T	C	.	alt_allele_in_normal;clustered_events	ECNT=3;HCNT=3;MAX_ED=16;MIN_ED=7;NLOD=57.56;TLOD=7.52	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:540,4:6.483e-03:2:2:0.500:0|1:49345735_C_T:18003,136:320:220	0/0:490,9:0.019:5:4:0.556:0|1:49345735_C_T:16230,302:265:225
chrX	49345751	.	T	C	.	alt_allele_in_normal;clustered_events	ECNT=3;HCNT=3;MAX_ED=16;MIN_ED=7;NLOD=69.65;TLOD=10.41	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:690,6:8.708e-03:3:3:0.500:0|1:49345735_C_T:22211,205:410:280	0/0:589,13:0.022:8:5:0.615:0|1:49345735_C_T:19123,425:322:267
chrX	49590981	.	A	G	.	alt_allele_in_normal	ECNT=1;HCNT=32;MAX_ED=.;MIN_ED=.;NLOD=13.28;TLOD=6.43	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:31,3:0.088:2:1:0.333:971,102:11:20	0/0:62,2:0.031:2:0:0.00:2002,57:29:33
chrX	49591355	.	CGT	C	.	alt_allele_in_normal;str_contraction;t_lod_fstar	ECNT=1;HCNT=8;MAX_ED=.;MIN_ED=.;NLOD=19.30;RPA=6,5;RU=GT;STR;TLOD=4.11	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:67,3:0.045:2:1:.:1824,81:31:36	0/0:272,4:0.015:2:2:.:7172,89:138:134
chrX	49596167	.	G	T	.	alt_allele_in_normal	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=28.76;TLOD=6.43	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:233,9:0.043:6:3:0.667:8018,312:128:105	0/0:170,2:0.013:1:1:0.500:5817,70:90:80
chrX	49605217	.	G	C	.	PASS	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.41;TLOD=13.72	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:8,5:0.385:1:4:0.200:276,169:4:4	0/0:8,0:0.00:0:0:.:268,0:5:3
chrX	49606175	rs5906843	C	A	.	clustered_events;germline_risk	DB;ECNT=2;HCNT=1;MAX_ED=9;MIN_ED=9;NLOD=2.41;TLOD=33.40	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:11,9:0.450:8:1:0.111:0|1:49606175_C_A:396,299:4:7	0/0:8,0:0.00:0:0:.:0|1:49606175_C_A:276,0:4:4
chrX	49606184	rs5906844	A	T	.	clustered_events;germline_risk	DB;ECNT=2;HCNT=1;MAX_ED=9;MIN_ED=9;NLOD=2.11;TLOD=37.34	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:11,10:0.476:8:2:0.200:0|1:49606175_C_A:353,339:4:7	0/0:7,0:0.00:0:0:.:0|1:49606175_C_A:226,0:3:4
chrX	49633024	rs7891756	T	C	.	alt_allele_in_normal	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=6.46;TLOD=47.37	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:38,44:0.180:16:26:0.381:1121,1433:19:16	0/0:36,2:0.020:1:1:0.500:968,72:13:17
chrX	50598598	rs2295544	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=7.38	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:10,3:0.231:2:1:0.667:336,90:5:5	0/0:8,0:0.00:0:0:.:264,0:4:4
chrX	52610680	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=9.63;TLOD=4.00	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:48,2:0.039:2:0:1.00:1600,61:19:29	0/0:32,0:0.00:0:0:.:1065,0:18:14
chrX	52612708	.	G	T	.	alt_allele_in_normal	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=10.17;TLOD=6.39	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:83,4:0.054:2:2:0.500:2870,129:37:46	0/0:48,2:0.043:2:0:1.00:1690,65:24:24
chrX	52612852	.	T	C	.	clustered_events;homologous_mapping_event	ECNT=4;HCNT=2;MAX_ED=78;MIN_ED=2;NLOD=7.83;TLOD=16.01	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:34,5:0.128:0:5:0.00:0|1:52612852_T_C:1036,182:16:18	0/0:29,0:0.00:0:0:.:0|1:52612852_T_C:921,0:15:14
chrX	52612854	.	C	T	.	clustered_events;homologous_mapping_event	ECNT=4;HCNT=2;MAX_ED=78;MIN_ED=2;NLOD=8.13;TLOD=16.01	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:33,5:0.128:0:5:1.00:0|1:52612852_T_C:920,166:15:18	0/0:27,0:0.00:0:0:.:0|1:52612852_T_C:814,0:14:13
chrX	52612862	.	A	T	.	clustered_events;homologous_mapping_event	ECNT=4;HCNT=2;MAX_ED=78;MIN_ED=2;NLOD=6.92;TLOD=20.65	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:27,7:0.194:1:6:0.857:0|1:52612852_T_C:879,237:9:18	0/0:26,0:0.00:0:0:.:0|1:52612852_T_C:868,0:13:13
chrX	52612930	.	G	A	.	clustered_events;homologous_mapping_event;t_lod_fstar	ECNT=4;HCNT=2;MAX_ED=78;MIN_ED=2;NLOD=5.12;TLOD=5.00	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:14,3:0.176:2:1:0.667:483,91:5:9	0/0:18,0:0.00:0:0:.:597,0:8:10
chrX	52657288	rs57870699	T	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=19.44	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:7,8:0.538:4:4:0.500:232,246:5:2	0/0:7,0:0.00:0:0:.:229,0:2:5
chrX	52862789	.	G	A	.	clustered_events;germline_risk	ECNT=2;HCNT=2;MAX_ED=14;MIN_ED=14;NLOD=1.20;TLOD=35.26	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:10,11:0.524:4:7:0.364:355,364:6:4	0/0:4,0:0.00:0:0:.:142,0:2:2
chrX	52862803	.	CT	C	.	clustered_events;germline_risk	ECNT=2;HCNT=2;MAX_ED=14;MIN_ED=14;NLOD=0.602;RPA=3,2;RU=T;STR;TLOD=13.98	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:7,5:0.417:4:1:.:249,179:4:3	0/0:2,0:0.00:0:0:.:71,0:1:1
chrX	53984971	.	TCTC	T	.	alt_allele_in_normal;str_contraction	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=17.65;RPA=5,4;RU=CTC;STR;TLOD=8.75	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:183,5:0.025:1:4:.:5890,163:100:83	0/0:98,2:0.022:0:2:.:3151,67:62:36
chrX	54239108	.	G	GACAAA	.	germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.59;RPA=9,10;RU=ACAAA;STR;TLOD=16.68	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:3,6:0.625:3:3:.:108,164:1:2	0/0:5,0:0.00:0:0:.:148,0:2:3
chrX	54446073	rs2230265	G	A	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.74;TLOD=27.66	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:11,10:0.474:7:3:0.700:373,325:9:2	0/0:19,1:0.056:0:1:0.00:630,32:9:10
chrX	54551905	.	GGAA	G	.	str_contraction	ECNT=1;HCNT=3;MAX_ED=.;MIN_ED=.;NLOD=15.61;RPA=4,3;RU=GAA;STR;TLOD=7.89	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:90,3:0.036:2:1:.:3058,103:52:38	0/0:56,0:0.00:0:0:.:1912,0:28:28
chrX	54759753	.	T	TA	.	alt_allele_in_normal;germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.43;RPA=1,2;RU=A;STR;TLOD=46.20	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:14,15:0.536:6:9:.:457,493:7:7	0/0:17,1:0.059:0:1:.:571,35:12:5
chrX	57292474	rs4030473	T	A	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.92;TLOD=117.65	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:33,37:0.536:19:18:0.514:1097,1207:24:9	0/0:47,3:0.061:2:1:0.667:1532,94:23:24
chrX	57392766	rs2015312	C	T	.	alt_allele_in_normal	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=8.80;TLOD=119.52	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:37,42:0.521:20:22:0.524:1273,1367:16:21	0/0:55,2:0.037:1:1:0.500:1924,65:24:31
chrX	57393245	rs5915006	C	A	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.61;TLOD=77.59	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:30,27:0.481:12:15:0.556:1019,848:17:13	0/0:37,3:0.079:0:3:1.00:1284,84:20:17
chrX	57394129	rs5914097	A	G	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.28;TLOD=98.83	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:30,31:0.508:10:21:0.677:971,1062:15:15	0/0:34,2:0.059:1:1:0.500:1088,70:15:19
chrX	57678480	rs5914129	A	G	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=10.90	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,4:0.500:1:3:0.750:130,114:2:2	0/0:5,0:0.00:0:0:.:167,0:4:1
chrX	63350650	.	T	C	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.62;TLOD=4.05	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:37,2:0.053:0:2:0.00:1218,65:19:18	0/0:22,0:0.00:0:0:.:729,0:12:10
chrX	65956802	.	CA	C	.	alt_allele_in_normal;clustered_events	ECNT=5;HCNT=8;MAX_ED=79;MIN_ED=33;NLOD=22.90;TLOD=26.25	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:172,11:0.067:4:7:.:5983,325:99:73	0/0:109,4:0.038:3:1:.:3825,114:65:44
chrX	65956835	.	T	C	.	alt_allele_in_normal;clustered_events	ECNT=5;HCNT=8;MAX_ED=79;MIN_ED=33;NLOD=10.58;TLOD=10.39	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:123,4:0.033:2:2:0.500:0|1:65956835_T_C:3984,140:76:47	0/0:79,3:0.038:3:0:1.00:0|1:65956835_T_C:2608,108:49:30
chrX	65956854	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=5;HCNT=8;MAX_ED=79;MIN_ED=33;NLOD=8.47;TLOD=10.49	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:103,4:0.035:2:2:0.500:0|1:65956835_T_C:3574,134:67:36	0/0:68,3:0.041:3:0:0.00:0|1:65956835_T_C:2394,104:44:24
chrX	65956874	.	A	C	.	alt_allele_in_normal;clustered_events	ECNT=5;HCNT=8;MAX_ED=79;MIN_ED=33;NLOD=10.27;TLOD=7.66	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:98,2:0.030:0:2:1.00:0|1:65956835_T_C:3094,69:62:36	0/0:61,2:0.031:2:0:0.00:0|1:65956835_T_C:1911,70:39:22
chrX	65956881	.	G	GAA	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=5;HCNT=8;MAX_ED=79;MIN_ED=33;NLOD=10.57;RPA=1,3;RU=A;STR;TLOD=4.80	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:90,2:0.021:0:2:.:0|1:65956835_T_C:3086,71:56:34	0/0:63,2:0.031:2:0:.:0|1:65956835_T_C:2199,63:41:22
chrX	66172794	rs7054364	C	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.76;TLOD=16.40	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,5:0.556:5:0:0.00:116,167:1:3	0/0:6,0:0.00:0:0:.:140,0:3:3
chrX	68212079	rs3788859	C	T	.	germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=3.31;TLOD=28.82	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:11,9:0.450:4:5:0.556:369,305:6:5	0/0:11,0:0.00:0:0:.:372,0:6:5
chrX	71140773	.	ACAG	A	.	clustered_events;homologous_mapping_event;str_contraction;t_lod_fstar	ECNT=3;HCNT=53;MAX_ED=56;MIN_ED=24;NLOD=14.70;RPA=5,4;RU=CAG;STR;TLOD=5.05	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:71,2:0.028:0:2:.:2225,63:30:41	0/0:49,0:0.00:0:0:.:1547,0:16:33
chrX	71140797	.	ACAG	A	.	clustered_events;multi_event_alt_allele_in_normal;str_contraction	ECNT=3;HCNT=58;MAX_ED=56;MIN_ED=24;NLOD=7.60;RPA=7,6;RU=CAG;STR;TLOD=8.11	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:52,3:0.055:1:2:.:1643,94:24:28	0/0:39,1:0.025:0:1:.:1228,33:15:24
chrX	71140829	.	GGCA	G	.	clustered_events;homologous_mapping_event;str_contraction	ECNT=3;HCNT=52;MAX_ED=56;MIN_ED=24;NLOD=9.58;RPA=6,5;RU=GCA;STR;TLOD=8.45	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:52,3:0.055:1:2:.:1507,81:18:34	0/0:33,0:0.00:0:0:.:949,0:13:20
chrX	71454845	.	C	T	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=9.28;TLOD=4.12	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:63,2:0.032:1:1:0.500:2179,70:36:27	0/0:33,0:0.00:0:0:.:1112,0:17:16
chrX	71544501	.	T	G	.	germline_risk;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=4.48	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:8,2:0.200:2:0:1.00:240,57:8:0	0/0:7,0:0.00:0:0:.:211,0:5:2
chrX	72160031	rs6624600	G	A	.	PASS	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=7.56;TLOD=128.78	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:34,42:0.548:15:27:0.357:1079,1375:15:19	0/0:36,1:0.027:0:1:0.00:1152,31:18:18
chrX	73823982	rs1620574	T	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=29.83	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:5,9:0.643:2:7:0.222:162,295:2:3	0/0:6,0:0.00:0:0:.:195,0:2:4
chrX	74107832	rs1417762	C	T	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.14;TLOD=49.42	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:17,16:0.485:9:7:0.438:586,518:9:8	0/0:17,1:0.059:0:1:1.00:579,35:10:7
chrX	74583057	.	A	C	.	alt_allele_in_normal	ECNT=1;HCNT=8;MAX_ED=.;MIN_ED=.;NLOD=2.85;TLOD=9.25	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:103,7:0.065:2:5:0.714:3229,232:59:44	0/0:57,4:0.067:2:2:0.500:1826,133:31:26
chrX	74583106	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=15;HCNT=2;MAX_ED=116;MIN_ED=6;NLOD=21.42;TLOD=18.33	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:212,12:0.035:4:8:0.333:0|1:74583106_G_A:6250,407:125:87	0/0:118,5:0.034:2:3:0.400:0|1:74583106_G_A:3498,169:67:51
chrX	74583112	.	A	G	.	alt_allele_in_normal;clustered_events	ECNT=15;HCNT=2;MAX_ED=116;MIN_ED=6;NLOD=22.32;TLOD=18.28	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:218,13:0.034:4:9:0.692:0|1:74583106_G_A:6967,393:128:90	0/0:123,5:0.033:2:3:0.600:0|1:74583106_G_A:3905,153:69:54
chrX	74583132	.	C	A	.	clustered_events;multi_event_alt_allele_in_normal	ECNT=15;HCNT=2;MAX_ED=116;MIN_ED=6;NLOD=31.92;TLOD=21.42	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:217,7:0.040:3:4:0.571:0|1:74583106_G_A:7598,228:126:91	0/0:124,1:8.264e-03:0:1:1.00:0|1:74583106_G_A:4299,34:69:55
chrX	74583135	.	T	C	.	clustered_events;multi_event_alt_allele_in_normal	ECNT=15;HCNT=2;MAX_ED=116;MIN_ED=6;NLOD=32.22;TLOD=18.23	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:210,7:0.034:3:4:0.429:0|1:74583106_G_A:6576,241:122:88	0/0:125,1:8.197e-03:0:1:0.00:0|1:74583106_G_A:3977,35:70:55
chrX	74583143	.	G	A	.	clustered_events;multi_event_alt_allele_in_normal	ECNT=15;HCNT=2;MAX_ED=116;MIN_ED=6;NLOD=32.53;TLOD=21.40	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:222,8:0.040:4:4:0.500:0|1:74583106_G_A:7685,254:129:93	0/0:134,1:8.130e-03:0:1:0.00:0|1:74583106_G_A:4654,31:73:61
chrX	74583148	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=15;HCNT=2;MAX_ED=116;MIN_ED=6;NLOD=29.23;TLOD=21.35	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:206,8:0.039:4:4:0.500:0|1:74583106_G_A:7055,259:119:87	0/0:131,3:0.023:1:2:0.333:0|1:74583106_G_A:4551,94:71:60
chrX	74583152	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=15;HCNT=2;MAX_ED=116;MIN_ED=6;NLOD=27.42;TLOD=24.62	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:194,9:0.046:4:5:0.444:0|1:74583106_G_A:6650,275:112:82	0/0:127,2:0.025:1:1:0.500:0|1:74583106_G_A:4354,65:66:61
chrX	74583162	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=15;HCNT=2;MAX_ED=116;MIN_ED=6;NLOD=29.82;TLOD=21.83	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:174,7:0.045:3:4:0.571:0|1:74583106_G_A:6101,214:99:75	0/0:122,2:0.017:1:1:0.500:0|1:74583106_G_A:4324,64:66:56
chrX	74583181	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=15;HCNT=2;MAX_ED=116;MIN_ED=6;NLOD=27.41;TLOD=15.87	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:162,6:0.037:2:4:0.667:0|1:74583106_G_A:5577,205:92:70	0/0:109,2:0.019:1:1:0.500:0|1:74583106_G_A:3801,70:54:55
chrX	74583185	.	G	T	.	alt_allele_in_normal;clustered_events	ECNT=15;HCNT=2;MAX_ED=116;MIN_ED=6;NLOD=27.11;TLOD=15.81	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:157,6:0.036:2:4:0.333:0|1:74583106_G_A:5444,191:87:70	0/0:104,2:0.019:1:1:0.500:0|1:74583106_G_A:3678,64:50:54
chrX	74583188	.	T	C	.	alt_allele_in_normal;clustered_events	ECNT=15;HCNT=2;MAX_ED=116;MIN_ED=6;NLOD=27.11;TLOD=12.46	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:158,5:0.016:2:3:0.400:0|1:74583106_G_A:5029,155:89:67	0/0:99,2:0.010:1:1:0.500:0|1:74583106_G_A:3243,57:49:50
chrX	74583194	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=15;HCNT=2;MAX_ED=116;MIN_ED=6;NLOD=25.90;TLOD=12.90	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:154,5:0.032:2:3:0.400:0|1:74583106_G_A:5400,160:87:67	0/0:104,2:0.020:1:1:0.500:0|1:74583106_G_A:3682,69:52:52
chrX	74583207	.	T	C	.	alt_allele_in_normal;clustered_events	ECNT=15;HCNT=2;MAX_ED=116;MIN_ED=6;NLOD=25.60;TLOD=13.09	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:138,5:0.035:2:3:0.400:0|1:74583106_G_A:4524,154:73:65	0/0:101,2:0.020:1:1:0.500:0|1:74583106_G_A:3312,55:52:49
chrX	74583209	.	A	G	.	alt_allele_in_normal;clustered_events	ECNT=15;HCNT=2;MAX_ED=116;MIN_ED=6;NLOD=25.60;TLOD=13.17	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:141,4:0.036:1:3:0.750:0|1:74583106_G_A:4654,133:74:67	0/0:92,2:0.020:1:1:0.500:0|1:74583106_G_A:3050,68:46:46
chrX	74583222	.	G	C	.	clustered_events;multi_event_alt_allele_in_normal	ECNT=15;HCNT=2;MAX_ED=116;MIN_ED=6;NLOD=19.58;TLOD=7.39	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:126,3:0.025:0:3:0.00:0|1:74583106_G_A:4326,108:64:62	0/0:81,1:0.025:0:1:0.00:0|1:74583106_G_A:2810,33:42:39
chrX	74583387	.	T	C	.	clustered_events;multi_event_alt_allele_in_normal	ECNT=10;HCNT=4;MAX_ED=128;MIN_ED=15;NLOD=6.03;TLOD=8.47	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:52,3:0.056:2:1:0.667:0|1:74583387_T_C:1650,106:29:23	0/0:36,1:0.029:1:0:1.00:0|1:74583387_T_C:1154,37:17:19
chrX	74583402	.	C	T	.	clustered_events;multi_event_alt_allele_in_normal	ECNT=10;HCNT=4;MAX_ED=128;MIN_ED=15;NLOD=6.04;TLOD=8.49	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:53,3:0.057:2:1:0.333:0|1:74583387_T_C:1856,105:29:24	0/0:35,1:0.029:1:0:0.00:0|1:74583387_T_C:1213,30:18:17
chrX	74583412	.	T	C	.	alt_allele_in_normal;clustered_events	ECNT=10;HCNT=4;MAX_ED=128;MIN_ED=15;NLOD=5.43;TLOD=8.55	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:55,3:0.059:2:1:0.667:0|1:74583387_T_C:1763,77:28:27	0/0:33,1:0.030:1:0:1.00:0|1:74583387_T_C:1050,28:16:17
chrX	74583444	.	A	G	.	clustered_events;homologous_mapping_event	ECNT=10;HCNT=6;MAX_ED=128;MIN_ED=15;NLOD=8.43;TLOD=15.54	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:52,5:0.104:3:2:0.400:0|1:74583444_A_G:1709,175:30:22	0/0:27,0:0.00:0:0:.:0|1:74583444_A_G:882,0:13:14
chrX	74583447	.	C	G	.	clustered_events;homologous_mapping_event	ECNT=10;HCNT=6;MAX_ED=128;MIN_ED=15;NLOD=8.13;TLOD=15.49	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:52,5:0.102:3:2:0.400:0|1:74583444_A_G:1826,175:30:22	0/0:26,0:0.00:0:0:.:0|1:74583444_A_G:892,0:12:14
chrX	74583451	.	C	T	.	clustered_events;homologous_mapping_event	ECNT=10;HCNT=6;MAX_ED=128;MIN_ED=15;NLOD=6.92;TLOD=15.49	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:50,5:0.102:3:2:0.400:0|1:74583444_A_G:1438,164:28:22	0/0:23,0:0.00:0:0:.:0|1:74583444_A_G:685,0:11:12
chrX	74583480	.	G	A	.	clustered_events;homologous_mapping_event	ECNT=10;HCNT=6;MAX_ED=128;MIN_ED=15;NLOD=4.82;TLOD=16.14	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:34,5:0.135:3:2:0.600:0|1:74583480_G_A:1140,168:17:17	0/0:16,0:0.00:0:0:.:0|1:74583480_G_A:542,0:10:6
chrX	74583483	.	C	T	.	clustered_events;homologous_mapping_event	ECNT=10;HCNT=6;MAX_ED=128;MIN_ED=15;NLOD=4.82;TLOD=16.07	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:34,5:0.132:3:2:0.400:0|1:74583480_G_A:1219,158:17:17	0/0:15,0:0.00:0:0:.:0|1:74583480_G_A:547,0:9:6
chrX	74583507	.	T	C	.	clustered_events;homologous_mapping_event	ECNT=10;HCNT=6;MAX_ED=128;MIN_ED=15;NLOD=3.91;TLOD=13.15	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:22,4:0.154:2:2:0.500:0|1:74583480_G_A:689,134:13:9	0/0:13,0:0.00:0:0:.:0|1:74583480_G_A:394,0:7:6
chrX	74583515	.	A	G	.	clustered_events;homologous_mapping_event	ECNT=10;HCNT=6;MAX_ED=128;MIN_ED=15;NLOD=3.01;TLOD=9.63	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:20,2:0.130:0:2:1.00:0|1:74583480_G_A:664,66:11:9	0/0:10,0:0.00:0:0:.:0|1:74583480_G_A:325,0:6:4
chrX	74744136	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=16;MAX_ED=.;MIN_ED=.;NLOD=18.36;TLOD=4.88	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:111,3:0.028:2:1:0.667:3813,94:56:55	0/0:62,0:0.00:0:0:.:2188,0:32:30
chrX	77523306	.	CTCT	C	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=26.67;RPA=4,3;RU=TCT;STR;TLOD=4.22	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:211,2:0.011:1:1:.:7402,71:119:92	0/0:99,0:0.00:0:0:.:3505,0:58:41
chrX	77557473	.	CTCT	C	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=21.03;RPA=4,3;RU=TCT;STR;TLOD=4.69	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:121,3:0.019:3:0:.:4088,103:64:57	0/0:77,0:0.00:0:0:.:2637,0:43:34
chrX	77599584	.	AAAAC	A	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=6;MAX_ED=.;MIN_ED=.;NLOD=29.29;RPA=5,4;RU=AAAC;STR;TLOD=4.45	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:149,2:0.014:0:2:.:4982,68:79:70	0/0:120,1:8.850e-03:0:1:.:4073,33:68:52
chrX	77969606	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=48;MAX_ED=.;MIN_ED=.;NLOD=26.14;TLOD=4.57	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:155,4:0.022:2:2:0.500:4970,127:74:81	0/0:96,0:0.00:0:0:.:3099,0:47:49
chrX	80682243	.	C	T	.	germline_risk;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=5.80	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,2:0.333:1:1:0.500:141,65:2:2	0/0:5,0:0.00:0:0:.:174,0:4:1
chrX	85279375	.	CAA	C	.	PASS	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=7.84;RPA=10,8;RU=A;STR;TLOD=6.68	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:75,5:0.068:2:3:.:2589,168:36:39	0/0:28,0:0.00:0:0:.:976,0:9:19
chrX	101019232	.	A	G	.	t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=9.33;TLOD=4.16	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:66,2:0.030:1:1:0.500:2176,71:30:36	0/0:33,0:0.00:0:0:.:1095,0:14:19
chrX	101841374	.	ATGG	A	.	alt_allele_in_normal;str_contraction	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=18.99;RPA=8,7;RU=TGG;STR;TLOD=23.06	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:144,10:0.068:8:2:.:4584,318:76:68	0/0:88,2:0.023:1:1:.:2760,64:52:36
chrX	102563502	.	A	G	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=11.14;TLOD=4.21	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:60,2:0.036:1:1:0.500:1920,70:37:23	0/0:42,0:0.00:0:0:.:1381,0:29:13
chrX	102749490	.	TGAG	T	.	alt_allele_in_normal;str_contraction	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=15.58;RPA=4,3;RU=GAG;STR;TLOD=14.80	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:255,6:0.025:2:4:.:8365,204:136:119	0/0:123,5:0.041:3:2:.:4030,160:68:55
chrX	103083844	.	T	C	.	germline_risk;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=6.15	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,2:0.500:1:1:0.500:70,64:2:0	0/0:4,0:0.00:0:0:.:130,0:0:4
chrX	103087477	rs5945935	G	A	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.24;TLOD=51.94	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:30,18:0.395:7:11:0.389:1024,605:14:16	0/0:19,1:0.053:0:1:0.00:665,30:10:9
chrX	104040193	rs2301384	C	T	.	PASS	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=3.01;TLOD=26.60	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:16,10:0.391:1:9:0.900:554,324:10:6	0/0:10,0:0.00:0:0:.:345,0:5:5
chrX	106903258	.	GGCA	G	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=8.11;RPA=4,3;RU=GCA;STR;TLOD=5.39	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:50,2:0.042:1:1:.:1628,68:23:27	0/0:30,0:0.00:0:0:.:996,0:14:16
chrX	108174427	.	T	TGGTC	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=18.43;RPA=1,2;RU=GGTC;STR;TLOD=4.80	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:106,2:0.021:2:0:.:3488,64:52:54	0/0:71,0:0.00:0:0:.:2344,0:34:37
chrX	108206708	rs1266731	G	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=38.73	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:8,11:0.579:3:8:0.273:269,391:4:4	0/0:7,0:0.00:0:0:.:242,0:2:5
chrX	109569365	rs55983990	T	C	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.94;TLOD=72.55	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:31,25:0.451:14:11:0.560:996,841:16:15	0/0:23,1:0.043:1:0:1.00:733,35:13:10
chrX	115646334	.	GAC	G	.	str_contraction	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=9.62;RPA=6,5;RU=AC;STR;TLOD=6.33	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:49,3:0.060:2:1:.:1727,108:23:26	0/0:33,0:0.00:0:0:.:1143,0:16:17
chrX	116108422	rs7057314	G	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.61;TLOD=17.96	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:17,6:0.273:5:1:0.833:555,207:7:10	0/0:13,0:0.00:0:0:.:430,0:6:7
chrX	118879014	.	T	TCGC	.	PASS	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.95;RPA=3,4;RU=CGC;STR;TLOD=53.65	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:13,14:0.519:3:11:.:398,443:7:6	0/0:13,0:0.00:0:0:.:384,0:5:8
chrX	119943050	rs2239964	T	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.51;TLOD=28.33	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:14,10:0.417:4:6:0.400:446,303:8:6	0/0:15,0:0.00:0:0:.:475,0:10:5
chrX	120456678	rs12097	T	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=36.56	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:20,13:0.400:9:4:0.692:627,425:17:3	0/0:7,0:0.00:0:0:.:215,0:4:3
chrX	120560261	.	TGAG	T	.	str_contraction	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=5.99;RPA=6,5;RU=GAG;STR;TLOD=13.37	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:68,5:0.068:5:0:.:2167,162:43:25	0/0:34,1:0.029:1:0:.:1106,31:17:17
chrX	129751595	.	A	AAAGG	.	alt_allele_in_normal;germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.16;RPA=12,13;RU=AAGG;STR;TLOD=9.74	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:13,11:0.200:8:3:.:66,338:1:1	0/0:22,3:0.094:1:2:.:0,96:0:0
chrX	130669976	.	T	C	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=11.74;TLOD=4.07	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:80,2:0.027:1:1:0.500:2667,71:42:38	0/0:41,0:0.00:0:0:.:1377,0:24:17
chrX	132097402	.	TACAC	T	.	alt_allele_in_normal;triallelic_site	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.44;RPA=13,11;RU=AC;STR;TLOD=12.03	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:29,9:0.209:1:4:.:766,140:15:12	0/0:40,5:0.105:1:3:.:981,110:17:18
chrX	132130635	.	G	T	.	t_lod_fstar	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=9.03;TLOD=4.15	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:36,2:0.059:2:0:1.00:1240,65:16:20	0/0:30,0:0.00:0:0:.:1029,0:10:20
chrX	135434439	rs12558323	G	A	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=9.02	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:3,3:0.500:0:3:0.00:105,94:1:2	0/0:5,0:0.00:0:0:.:165,0:2:3
chrX	135435009	rs72615453	G	C	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.01;TLOD=20.40	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:5,7:0.583:2:5:0.286:164,206:1:4	0/0:13,0:0.00:0:0:.:441,0:4:9
chrX	135438210	rs11095639	A	G	.	clustered_events;germline_risk	DB;ECNT=2;HCNT=2;MAX_ED=70;MIN_ED=70;NLOD=1.20;TLOD=8.57	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,3:0.600:1:2:0.667:61,86:0:2	0/0:4,0:0.00:0:0:.:127,0:1:3
chrX	135438280	rs11095640	G	T	.	clustered_events;germline_risk	DB;ECNT=2;HCNT=2;MAX_ED=70;MIN_ED=70;NLOD=1.50;TLOD=8.63	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:6,3:0.375:0:3:0.00:202,95:1:5	0/0:5,0:0.00:0:0:.:156,0:0:5
chrX	136874183	.	C	G	.	alt_allele_in_normal;clustered_events	ECNT=2;HCNT=8;MAX_ED=28;MIN_ED=28;NLOD=7.26;TLOD=93.58	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:147,43:0.237:19:24:0.558:4989,1328:89:58	0/0:88,7:0.071:5:2:0.286:2986,216:41:47
chrX	136874211	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=2;HCNT=12;MAX_ED=28;MIN_ED=28;NLOD=7.58;TLOD=109.55	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:166,47:0.236:22:25:0.468:4967,1483:96:70	0/0:97,7:0.070:3:4:0.429:2895,226:47:50
chrX	136874427	.	T	C	.	alt_allele_in_normal	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=3.98;TLOD=41.16	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:182,12:0.072:5:7:0.417:5792,338:88:94	0/0:93,6:0.058:1:5:0.167:2956,169:41:52
chrX	136875342	.	T	G	.	alt_allele_in_normal	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=8.80;TLOD=6.66	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:90,3:0.037:1:2:0.333:2929,108:56:34	0/0:58,2:0.036:0:2:0.00:1909,68:25:33
chrX	136875513	.	A	T	.	clustered_events;homologous_mapping_event	ECNT=3;HCNT=1;MAX_ED=28;MIN_ED=18;NLOD=12.04;TLOD=10.78	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:103,5:0.042:3:2:0.400:0|1:136875513_A_T:3376,161:66:37	0/0:44,0:0.00:0:0:.:0|1:136875513_A_T:1459,0:25:19
chrX	136875531	.	A	G	.	clustered_events;homologous_mapping_event	ECNT=3;HCNT=1;MAX_ED=28;MIN_ED=18;NLOD=12.94;TLOD=10.82	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:103,5:0.043:3:2:0.400:0|1:136875513_A_T:3405,162:62:41	0/0:50,0:0.00:0:0:.:0|1:136875513_A_T:1655,0:28:22
chrX	136875541	.	T	C	.	clustered_events;homologous_mapping_event	ECNT=3;HCNT=1;MAX_ED=28;MIN_ED=18;NLOD=12.94;TLOD=10.84	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:104,5:0.043:3:2:0.600:0|1:136875513_A_T:3516,174:61:43	0/0:50,0:0.00:0:0:.:0|1:136875513_A_T:1708,0:26:24
chrX	136876537	.	T	C	.	alt_allele_in_normal;clustered_events	ECNT=3;HCNT=2;MAX_ED=34;MIN_ED=8;NLOD=15.68;TLOD=16.12	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:143,6:0.041:3:3:0.500:0|1:136876537_T_C:4458,200:79:64	0/0:78,2:0.024:1:1:0.500:0|1:136876537_T_C:2453,68:42:36
chrX	136876545	.	G	C	.	alt_allele_in_normal;clustered_events	ECNT=3;HCNT=2;MAX_ED=34;MIN_ED=8;NLOD=18.09;TLOD=17.81	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:140,8:0.048:5:3:0.625:0|1:136876537_T_C:4786,266:72:68	0/0:91,2:0.022:1:1:0.500:0|1:136876537_T_C:3148,68:51:40
chrX	136876571	.	C	A	.	alt_allele_in_normal;clustered_events	ECNT=3;HCNT=2;MAX_ED=34;MIN_ED=8;NLOD=12.08;TLOD=12.96	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:152,13:0.054:6:7:0.538:5131,407:75:77	0/0:93,5:0.044:2:3:0.600:3188,164:59:34
chrX	136877987	.	G	GAA	.	t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=9.04;RPA=1,3;RU=A;STR;TLOD=5.13	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:64,4:0.031:0:4:.:2201,143:33:31	0/0:30,0:0.00:0:0:.:1032,0:14:16
chrX	136879401	.	C	G	.	alt_allele_in_normal	ECNT=1;HCNT=12;MAX_ED=.;MIN_ED=.;NLOD=20.88;TLOD=19.12	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:137,12:0.072:5:7:0.583:4363,402:72:65	0/0:106,2:0.021:1:1:0.500:3386,67:54:52
chrX	139536886	.	G	T	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.41;TLOD=4.86	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:12,2:0.143:1:1:0.500:437,64:8:4	0/0:8,0:0.00:0:0:.:291,0:4:4
chrX	139585293	rs5909018	C	T	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.08;TLOD=73.91	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:17,25:0.595:15:10:0.400:606,740:9:8	0/0:29,2:0.065:1:1:0.500:1041,63:17:12
chrX	139800013	.	ACC	A	.	alt_allele_in_normal;germline_risk;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.964;RPA=11,9;RU=C;STR;TLOD=4.02	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:42,5:0.080:0:5:.:85,132:2:1	0/0:19,1:0.053:0:1:.:0,34:0:0
chrX	139958016	.	TAC	T	.	alt_allele_in_normal;str_contraction	ECNT=1;HCNT=9;MAX_ED=.;MIN_ED=.;NLOD=41.87;RPA=7,6;RU=AC;STR;TLOD=14.84	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:460,12:0.025:6:6:.:14364,379:221:239	0/0:246,7:0.032:5:2:.:7631,216:118:128
chrX	141003419	.	T	C	.	alt_allele_in_normal	ECNT=1;HCNT=18;MAX_ED=.;MIN_ED=.;NLOD=47.71;TLOD=19.93	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:546,17:0.033:7:10:0.412:17068,561:227:319	0/0:468,23:0.049:11:12:0.478:14672,791:216:252
chrX	141881178	.	TTCC	T	.	germline_risk;str_contraction	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;RPA=6,5;RU=TCC;STR;TLOD=6.32	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:15,2:0.118:0:2:.:500,67:6:9	0/0:5,0:0.00:0:0:.:167,0:2:3
chrX	145247374	.	C	T	.	germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=8.83	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:8,3:0.273:0:3:1.00:270,102:4:4	0/0:6,0:0.00:0:0:.:200,0:3:3
chrX	147259016	rs2504174	C	T	.	germline_risk	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.41;TLOD=14.22	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:8,5:0.385:3:2:0.400:227,163:5:3	0/0:8,0:0.00:0:0:.:223,0:6:2
chrX	148953814	.	GAC	G	.	alt_allele_in_normal;str_contraction;t_lod_fstar;triallelic_site	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=2.99;RPA=11,10;RU=AC;STR;TLOD=5.91	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:43,8:0.084:2:3:.:1495,178:19:24	0/0:31,3:0.046:0:2:.:1090,73:12:19
chrX	150471052	.	ACAG	A	.	alt_allele_in_normal;str_contraction	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.58;RPA=8,7;RU=CAG;STR;TLOD=6.59	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:70,3:0.043:0:3:.:2236,99:30:40	0/0:41,2:0.048:1:1:.:1311,64:18:23
chrX	150471360	.	TGCA	T	.	alt_allele_in_normal;str_contraction	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=23.59;RPA=6,5;RU=GCA;STR;TLOD=7.17	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:142,3:0.021:1:2:.:4640,100:57:85	0/0:106,2:0.019:1:1:.:3503,67:55:51
chrX	151181252	.	G	A	.	PASS	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=31.68;TLOD=63.24	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:165,26:0.138:13:13:0.500:5083,837:72:93	0/0:117,1:8.475e-03:1:0:1.00:3561,33:60:57
chrX	151648669	.	CGCT	C	.	alt_allele_in_normal;str_contraction	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.69;RPA=8,7;RU=GCT;STR;TLOD=10.43	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:130,5:0.040:4:1:.:3730,149:67:63	0/0:71,4:0.059:2:2:.:2062,115:43:28
chrX	151676230	rs4553055	G	A	.	alt_allele_in_normal;germline_risk	DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.64;TLOD=76.80	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:15,24:0.615:17:7:0.708:519,767:5:10	0/0:16,1:0.059:1:0:1.00:554,30:7:9
chrX	151740835	rs35350051	G	T	.	alt_allele_in_normal	DB;ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=8.98;TLOD=324.54	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:148,122:0.438:66:56:0.541:5130,4019:84:64	0/0:125,9:0.059:5:4:0.556:4380,297:72:53
chrX	152135433	.	CAGG	C	.	alt_allele_in_normal;str_contraction;t_lod_fstar	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=9.57;RPA=5,4;RU=AGG;STR;TLOD=4.59	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:118,2:0.017:2:0:.:4114,71:59:59	0/0:61,2:0.032:2:0:.:2169,74:26:35
chrX	152649545	.	T	C	.	germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=6.85	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,2:0.500:1:1:0.500:66,71:0:2	0/0:6,0:0.00:0:0:.:196,0:2:4
chrX	152828726	.	A	C	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.81;TLOD=4.33	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:27,2:0.071:1:1:0.500:800,65:17:10	0/0:17,0:0.00:0:0:.:521,0:9:8
chrX	152919025	.	CGAG	C	.	alt_allele_in_normal;germline_risk;str_contraction	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.37;RPA=7,6;RU=GAG;STR;TLOD=8.75	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:35,3:0.097:2:1:.:1064,82:16:19	0/0:21,1:0.053:1:0:.:613,34:8:13
chrX	153462634	.	C	T	.	PASS	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=4.82;TLOD=40.18	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:22,16:0.412:5:11:0.688:685,502:10:12	0/0:18,0:0.00:0:0:.:595,0:9:9
chrX	153506051	rs1126499	C	T	.	alt_allele_in_normal	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=8.79;TLOD=157.02	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:49,55:0.553:30:25:0.455:1477,1705:21:28	0/0:52,2:0.038:1:1:0.500:1550,62:23:29
chrX	153783201	.	CA	C	.	germline_risk;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.739;TLOD=4.57	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,16:0.524:0:16:.:131,548:1:3	0/0:3,1:0.00:0:1:.:105,35:0:3
chrX	153982797	rs13397	G	A	.	PASS	DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=11.27;TLOD=110.66	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:50,42:0.442:23:19:0.548:1588,1312:29:21	0/0:52,1:0.020:0:1:0.00:1637,30:32:20
chrX	154438738	.	GTC	G	.	alt_allele_in_normal;str_contraction	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=38.66;RPA=6,5;RU=TC;STR;TLOD=8.83	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:436,6:0.015:4:2:.:15045,185:248:188	0/0:210,6:0.030:4:2:.:7341,216:111:99
chrY	11307580	.	C	T	.	germline_risk	ECNT=2;HCNT=34;MAX_ED=1;MIN_ED=1;NLOD=0.903;TLOD=12.52	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:1,3:0.750:1:2:0.667:0|1:11307580_C_T:37,98:0:1	0/0:2,0:0.00:0:0:.:0|1:11307580_C_T:71,0:0:2
chrY	11307581	.	A	T	.	germline_risk	ECNT=2;HCNT=34;MAX_ED=1;MIN_ED=1;NLOD=0.903;TLOD=12.52	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:1,3:0.750:1:2:0.667:0|1:11307580_C_T:35,96:0:1	0/0:2,0:0.00:0:0:.:0|1:11307580_C_T:68,0:0:2
chrY	11308095	.	C	CT	.	clustered_events;homologous_mapping_event	ECNT=6;HCNT=5;MAX_ED=31;MIN_ED=1;NLOD=3.01;TLOD=6.74	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:8,2:0.182:0:2:.:0|1:11308095_C_CT:258,71:4:4	0/0:9,0:0.00:0:0:.:0|1:11308095_C_CT:276,0:2:7
chrY	11308096	.	G	C	.	clustered_events;homologous_mapping_event	ECNT=6;HCNT=5;MAX_ED=31;MIN_ED=1;NLOD=3.01;TLOD=6.74	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:8,2:0.182:0:2:0.00:0|1:11308095_C_CT:228,65:5:3	0/0:10,0:0.00:0:0:.:0|1:11308095_C_CT:295,0:3:7
chrY	11308110	.	C	T	.	clustered_events;homologous_mapping_event;t_lod_fstar	ECNT=6;HCNT=5;MAX_ED=31;MIN_ED=1;NLOD=5.12;TLOD=6.05	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:16,2:0.087:0:2:1.00:0|1:11308095_C_CT:534,63:10:6	0/0:16,0:0.00:0:0:.:0|1:11308095_C_CT:539,0:8:8
chrY	11308123	.	C	T	.	alt_allele_in_normal;clustered_events;germline_risk	ECNT=6;HCNT=8;MAX_ED=31;MIN_ED=1;NLOD=2.12;TLOD=13.15	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:23,4:0.154:1:3:0.750:726,131:13:10	0/0:24,2:0.080:0:2:1.00:751,66:12:12
chrY	11308125	.	C	A	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=6;HCNT=3;MAX_ED=31;MIN_ED=1;NLOD=2.42;TLOD=5.94	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:25,2:0.077:1:1:0.500:0|1:11308125_C_A:854,64:13:12	0/0:24,2:0.077:0:2:1.00:0|1:11308125_C_A:819,62:12:12
chrY	11308126	.	C	A	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=6;HCNT=3;MAX_ED=31;MIN_ED=1;NLOD=2.42;TLOD=5.90	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:25,2:0.074:1:1:0.500:0|1:11308125_C_A:846,65:13:12	0/0:25,2:0.077:0:2:1.00:0|1:11308125_C_A:861,64:13:12
chrY	11315114	.	T	A	.	alt_allele_in_normal;clustered_events	ECNT=6;HCNT=14;MAX_ED=75;MIN_ED=21;NLOD=2.71;TLOD=10.85	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:10,3:0.300:2:1:0.667:0|1:11315114_T_A:324,102:3:7	0/0:15,1:0.059:0:1:0.00:0|1:11315114_T_A:508,34:6:9
chrY	11315135	.	C	G	.	clustered_events;multi_event_alt_allele_in_normal	ECNT=6;HCNT=14;MAX_ED=75;MIN_ED=21;NLOD=8.13;TLOD=9.52	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:22,3:0.120:2:1:0.333:0|1:11315114_T_A:712,104:5:17	0/0:32,1:0.028:0:1:1.00:0|1:11315114_T_A:1128,36:15:17
chrY	11315172	.	C	A	.	alt_allele_in_normal;clustered_events	ECNT=6;HCNT=28;MAX_ED=75;MIN_ED=21;NLOD=4.55;TLOD=16.20	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:35,6:0.139:0:6:1.00:0|1:11315172_C_A:1187,190:15:20	0/0:49,3:0.042:2:1:0.333:0|1:11315172_C_A:1681,95:22:27
chrY	11315173	.	T	A	.	alt_allele_in_normal;clustered_events	ECNT=6;HCNT=28;MAX_ED=75;MIN_ED=21;NLOD=4.55;TLOD=16.20	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:35,6:0.139:0:6:0.00:0|1:11315172_C_A:1141,203:15:20	0/0:49,3:0.042:2:1:0.667:0|1:11315172_C_A:1594,93:22:27
chrY	11315185	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=6;HCNT=28;MAX_ED=75;MIN_ED=21;NLOD=4.85;TLOD=16.14	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:36,7:0.135:0:7:1.00:0|1:11315172_C_A:1107,212:16:20	0/0:48,3:0.042:2:1:0.333:0|1:11315172_C_A:1487,92:22:26
chrY	11315189	.	G	C	.	alt_allele_in_normal;clustered_events	ECNT=6;HCNT=28;MAX_ED=75;MIN_ED=21;NLOD=4.85;TLOD=19.80	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:35,6:0.158:0:6:0.00:0|1:11315172_C_A:1164,200:16:19	0/0:49,3:0.042:2:1:0.667:0|1:11315172_C_A:1655,101:23:26
chrY	11315238	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=3;HCNT=1;MAX_ED=11;MIN_ED=1;NLOD=9.96;TLOD=8.47	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:49,3:0.034:3:0:0.00:0|1:11315238_C_T:1649,99:28:21	0/0:75,2:0.014:2:0:0.00:0|1:11315238_C_T:2580,68:38:37
chrY	11315239	.	A	T	.	clustered_events;homologous_mapping_event;t_lod_fstar	ECNT=3;HCNT=3;MAX_ED=11;MIN_ED=1;NLOD=16.25;TLOD=5.59	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:36,2:0.032:2:0:0.00:1209,67:18:18	0/0:68,0:0.00:0:0:.:2325,0:36:32
chrY	11315249	.	T	G	.	clustered_events;multi_event_alt_allele_in_normal;t_lod_fstar	ECNT=3;HCNT=1;MAX_ED=11;MIN_ED=1;NLOD=13.56;TLOD=5.49	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:52,2:0.047:2:0:1.00:0|1:11315238_C_T:1650,67:29:23	0/0:65,1:0.015:1:0:1.00:0|1:11315238_C_T:2117,33:32:33
chrY	11316164	.	AC	A	.	alt_allele_in_normal;clustered_events;germline_risk	ECNT=4;HCNT=4;MAX_ED=17;MIN_ED=11;NLOD=0.934;TLOD=16.81	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:23,5:0.185:4:1:.:0|1:11316164_AC_A:676,153:17:6	0/0:30,2:0.059:2:0:.:0|1:11316164_AC_A:915,51:16:14
chrY	11316175	.	A	T	.	clustered_events;homologous_mapping_event	ECNT=4;HCNT=10;MAX_ED=17;MIN_ED=11;NLOD=9.63;TLOD=12.60	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:34,2:0.114:2:0:0.00:0|1:11316175_A_T:1055,62:24:10	0/0:35,0:0.030:0:0:.:0|1:11316175_A_T:1117,0:17:18
chrY	11316176	.	T	TCA	.	clustered_events;germline_risk;homologous_mapping_event	ECNT=4;HCNT=10;MAX_ED=17;MIN_ED=11;NLOD=1.54;TLOD=16.20	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:34,2:0.139:2:0:.:0|1:11316175_A_T:1045,67:24:10	0/0:37,0:0.057:0:0:.:0|1:11316175_A_T:1186,0:18:19
chrY	11316181	.	G	GA	.	alt_allele_in_normal;clustered_events	ECNT=4;HCNT=4;MAX_ED=17;MIN_ED=11;NLOD=4.26;RPA=2,3;RU=A;STR;TLOD=17.28	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:34,8:0.158:6:2:.:0|1:11316164_AC_A:1171,264:20:14	0/0:37,3:0.050:3:0:.:0|1:11316164_AC_A:1274,93:17:20
chrY	11316245	.	G	A	.	PASS	ECNT=1;HCNT=14;MAX_ED=.;MIN_ED=.;NLOD=7.82;TLOD=10.06	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:41,4:0.093:1:3:0.250:1339,133:21:20	0/0:24,0:0.00:0:0:.:792,0:12:12
chrY	11322588	.	A	G	.	clustered_events;germline_risk;homologous_mapping_event;t_lod_fstar	ECNT=3;HCNT=33;MAX_ED=58;MIN_ED=54;NLOD=1.50;TLOD=6.23	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:7,3:0.136:1:2:.:214,99:4:3	0/0:5,0:0.00:0:0:.:160,0:5:0
chrY	11322642	.	G	A	.	clustered_events;multi_event_alt_allele_in_normal;t_lod_fstar	ECNT=3;HCNT=4;MAX_ED=58;MIN_ED=54;NLOD=13.68;TLOD=4.79	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:39,3:0.038:2:1:0.667:1208,91:17:22	0/0:60,1:8.130e-03:1:0:1.00:1902,30:34:26
chrY	11322646	.	G	C	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=3;HCNT=5;MAX_ED=58;MIN_ED=54;NLOD=11.49;TLOD=5.26	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:39,2:0.019:2:0:1.00:1236,64:16:23	0/0:60,2:0.011:0:2:0.00:1919,70:34:26
chrY	11322660	.	C	A	.	alt_allele_in_normal;clustered_events;germline_risk	ECNT=9;HCNT=14;MAX_ED=108;MIN_ED=2;NLOD=1.65;TLOD=7.72	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:44,5:0.083:2:3:0.600:1491,150:20:24	0/0:64,5:0.074:2:3:0.600:2193,152:37:27
chrY	11322662	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=9;HCNT=2;MAX_ED=108;MIN_ED=2;NLOD=9.20;TLOD=6.80	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:41,4:0.085:2:2:0.500:1314,127:16:25	0/0:62,3:0.046:1:2:0.333:1956,97:36:26
chrY	11322674	.	G	C	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=9;HCNT=10;MAX_ED=108;MIN_ED=2;NLOD=2.56;TLOD=5.35	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:31,2:0.057:0:2:0.00:1069,73:13:18	0/0:43,3:0.067:1:2:0.333:1477,108:24:19
chrY	11322713	.	C	A	.	alt_allele_in_normal;clustered_events	ECNT=9;HCNT=19;MAX_ED=108;MIN_ED=2;NLOD=3.23;TLOD=12.53	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:19,2:0.167:0:2:1.00:0|1:11322713_C_A:630,65:10:9	0/0:47,1:0.063:0:1:1.00:0|1:11322713_C_A:1635,34:25:22
chrY	11322716	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=9;HCNT=19;MAX_ED=108;MIN_ED=2;NLOD=7.43;TLOD=8.91	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:21,3:0.136:1:2:0.667:0|1:11322713_C_A:668,96:10:11	0/0:48,2:0.043:0:2:1.00:0|1:11322713_C_A:1671,64:26:22
chrY	11322723	.	T	A	.	alt_allele_in_normal;clustered_events;germline_risk	ECNT=9;HCNT=4;MAX_ED=108;MIN_ED=2;NLOD=0.648;TLOD=9.46	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:23,3:0.115:2:1:0.667:703,96:10:13	0/0:53,4:0.070:2:2:0.500:1683,138:26:27
chrY	11322745	.	G	T	.	clustered_events;multi_event_alt_allele_in_normal;t_lod_fstar	ECNT=9;HCNT=3;MAX_ED=108;MIN_ED=2;NLOD=17.46;TLOD=5.67	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:35,3:0.057:1:2:0.333:1159,99:18:17	0/0:71,1:0.014:1:0:1.00:2451,34:35:36
chrY	11322767	.	G	T	.	clustered_events;multi_event_alt_allele_in_normal;t_lod_fstar;triallelic_site	ECNT=9;HCNT=5;MAX_ED=108;MIN_ED=2;NLOD=16.25;TLOD=5.62	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:29,3:0.033:1:2:0.333:925,97:15:14	0/0:64,1:7.634e-03:1:0:1.00:2015,33:31:33
chrY	11322768	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=9;HCNT=4;MAX_ED=108;MIN_ED=2;NLOD=7.25;TLOD=9.13	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:31,3:0.091:3:0:0.00:1028,95:15:16	0/0:61,2:0.030:2:0:0.00:2075,59:29:32
chrY	11332566	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=3;HCNT=18;MAX_ED=22;MIN_ED=8;NLOD=3.33;TLOD=12.12	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:21,4:0.182:3:1:0.750:0|1:11332566_G_A:573,124:11:10	0/0:31,1:0.030:0:1:0.00:0|1:11332566_G_A:958,33:19:12
chrY	11332574	.	T	A	.	clustered_events;multi_event_alt_allele_in_normal	ECNT=3;HCNT=18;MAX_ED=22;MIN_ED=8;NLOD=3.93;TLOD=9.98	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:20,3:0.167:2:1:0.667:0|1:11332566_G_A:559,90:10:10	0/0:35,1:0.028:0:1:0.00:0|1:11332566_G_A:1014,30:19:16
chrY	11332588	.	C	A	.	clustered_events;multi_event_alt_allele_in_normal	ECNT=3;HCNT=18;MAX_ED=22;MIN_ED=8;NLOD=4.53;TLOD=9.83	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:24,3:0.150:2:1:0.333:0|1:11332566_G_A:644,97:11:13	0/0:37,1:0.026:0:1:1.00:0|1:11332566_G_A:1081,35:17:20
chrY	11332621	.	G	A	.	clustered_events;homologous_mapping_event	ECNT=6;HCNT=1;MAX_ED=38;MIN_ED=15;NLOD=7.83;TLOD=12.55	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:31,4:0.111:3:1:0.750:0|1:11332621_G_A:976,128:13:18	0/0:32,0:0.00:0:0:.:0|1:11332621_G_A:1020,0:13:19
chrY	11332636	.	C	T	.	clustered_events;multi_event_alt_allele_in_normal	ECNT=6;HCNT=4;MAX_ED=38;MIN_ED=15;NLOD=7.26;TLOD=7.20	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:24,3:0.100:2:1:0.333:747,100:12:12	0/0:47,1:0.020:1:0:0.00:1471,34:24:23
chrY	11332637	.	G	T	.	clustered_events;homologous_mapping_event	ECNT=6;HCNT=1;MAX_ED=38;MIN_ED=15;NLOD=9.25;TLOD=12.95	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:19,4:0.089:3:1:0.750:0|1:11332621_G_A:523,132:7:11	0/0:36,0:0.00:0:0:.:0|1:11332621_G_A:1011,0:19:15
chrY	11332650	.	C	A	.	clustered_events;homologous_mapping_event	ECNT=6;HCNT=1;MAX_ED=38;MIN_ED=15;NLOD=14.75;TLOD=12.88	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:23,4:0.133:3:1:0.250:0|1:11332621_G_A:776,96:9:14	0/0:57,0:0.00:0:0:.:0|1:11332621_G_A:1926,0:29:28
chrY	11332651	.	C	A	.	clustered_events;homologous_mapping_event	ECNT=6;HCNT=1;MAX_ED=38;MIN_ED=15;NLOD=15.65;TLOD=12.82	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:23,4:0.129:3:1:0.250:0|1:11332621_G_A:746,98:9:14	0/0:62,0:0.00:0:0:.:0|1:11332621_G_A:2032,0:33:29
chrY	11332659	.	T	C	.	alt_allele_in_normal;clustered_events	ECNT=6;HCNT=8;MAX_ED=38;MIN_ED=15;NLOD=8.76;TLOD=12.71	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:29,4:0.121:3:1:0.750:898,135:14:15	0/0:76,2:0.026:2:0:1.00:2462,69:39:37
chrY	11332965	.	C	T	.	alt_allele_in_normal	ECNT=1;HCNT=11;MAX_ED=.;MIN_ED=.;NLOD=5.47;TLOD=14.68	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:8,5:0.333:2:3:0.600:240,155:6:2	0/0:20,1:0.045:1:0:0.00:570,33:11:9
chrY	11332978	.	C	G	.	clustered_events;homologous_mapping_event	ECNT=16;HCNT=1;MAX_ED=217;MIN_ED=119;NLOD=2.41;TLOD=11.20	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,5:0.375:1:4:0.800:120,159:2:2	0/0:7,0:0.00:0:0:.:226,0:3:4
chrY	11333097	.	C	A	.	clustered_events;germline_risk;homologous_mapping_event	ECNT=16;HCNT=2;MAX_ED=217;MIN_ED=119;NLOD=2.11;TLOD=6.68	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:8,2:0.111:1:1:0.500:0|1:11333097_C_A:283,62:3:5	0/0:9,0:0.00:0:0:.:0|1:11333097_C_A:318,0:4:5
chrY	11333104	.	G	T	.	clustered_events;homologous_mapping_event	ECNT=16;HCNT=2;MAX_ED=217;MIN_ED=119;NLOD=2.41;TLOD=10.70	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:8,2:0.273:1:1:0.500:0|1:11333097_C_A:281,66:3:5	0/0:11,0:0.00:0:0:.:0|1:11333097_C_A:381,0:5:6
chrY	11333109	.	C	T	.	clustered_events;homologous_mapping_event	ECNT=16;HCNT=2;MAX_ED=217;MIN_ED=119;NLOD=2.41;TLOD=10.70	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:8,3:0.273:1:2:0.667:0|1:11333097_C_A:276,100:3:5	0/0:11,0:0.00:0:0:.:0|1:11333097_C_A:381,0:5:6
chrY	11333114	.	C	A	.	clustered_events;homologous_mapping_event	ECNT=16;HCNT=2;MAX_ED=217;MIN_ED=119;NLOD=2.41;TLOD=10.45	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:9,3:0.231:1:2:0.667:0|1:11333097_C_A:314,93:3:6	0/0:11,0:0.00:0:0:.:0|1:11333097_C_A:386,0:5:6
chrY	11333132	.	G	C	.	clustered_events;germline_risk;homologous_mapping_event	ECNT=16;HCNT=2;MAX_ED=217;MIN_ED=119;NLOD=1.81;TLOD=10.15	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:13,3:0.188:1:2:0.333:0|1:11333097_C_A:439,100:4:9	0/0:7,0:0.00:0:0:.:0|1:11333097_C_A:236,0:3:4
chrY	11333140	.	G	A	.	clustered_events;germline_risk;homologous_mapping_event	ECNT=16;HCNT=14;MAX_ED=217;MIN_ED=119;NLOD=1.51;TLOD=6.65	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:10,2:0.167:0:2:0.00:0|1:11333140_G_A:325,67:4:6	0/0:4,0:0.00:0:0:.:0|1:11333140_G_A:138,0:1:3
chrY	11333144	.	C	A	.	alt_allele_in_normal;clustered_events;germline_risk	ECNT=16;HCNT=35;MAX_ED=217;MIN_ED=119;NLOD=1.20;TLOD=9.98	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:8,2:0.273:0:2:1.00:276,64:2:6	0/0:4,1:0.200:0:1:1.00:140,32:2:2
chrY	11333145	.	C	T	.	clustered_events;germline_risk;homologous_mapping_event	ECNT=16;HCNT=14;MAX_ED=217;MIN_ED=119;NLOD=1.20;TLOD=6.83	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:8,2:0.200:0:2:1.00:0|1:11333140_G_A:261,66:2:6	0/0:5,0:0.00:0:0:.:0|1:11333140_G_A:176,0:2:3
chrY	11333161	.	G	C	.	clustered_events;germline_risk;homologous_mapping_event	ECNT=16;HCNT=14;MAX_ED=217;MIN_ED=119;NLOD=1.81;TLOD=10.82	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:7,3:0.200:1:2:0.333:0|1:11333140_G_A:223,101:3:4	0/0:6,0:0.00:0:0:.:0|1:11333140_G_A:205,0:4:2
chrY	11333163	.	CGGT	C	.	clustered_events;homologous_mapping_event	ECNT=16;HCNT=14;MAX_ED=217;MIN_ED=119;NLOD=2.41;TLOD=10.57	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:9,3:0.250:1:2:.:0|1:11333140_G_A:262,100:4:5	0/0:8,0:0.00:0:0:.:0|1:11333140_G_A:249,0:7:1
chrY	11333168	.	G	GGC	.	clustered_events;germline_risk;homologous_mapping_event	ECNT=16;HCNT=14;MAX_ED=217;MIN_ED=119;NLOD=1.50;TLOD=13.50	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:0,3:1.00:1:2:.:0|1:11333140_G_A:0,102:0:0	0/0:3,0:0.00:0:0:.:0|1:11333140_G_A:65,0:2:0
chrY	11333176	.	G	A	.	clustered_events;homologous_mapping_event	ECNT=16;HCNT=14;MAX_ED=217;MIN_ED=119;NLOD=6.02;TLOD=10.34	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:13,3:0.214:1:2:0.333:0|1:11333140_G_A:390,95:4:9	0/0:16,0:0.00:0:0:.:0|1:11333140_G_A:516,0:12:4
chrY	11333177	.	G	T	.	clustered_events;homologous_mapping_event	ECNT=16;HCNT=14;MAX_ED=217;MIN_ED=119;NLOD=6.02;TLOD=10.34	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:13,3:0.214:1:2:0.333:0|1:11333140_G_A:426,96:4:9	0/0:19,0:0.00:0:0:.:0|1:11333140_G_A:624,0:13:6
chrY	11333189	.	G	C	.	clustered_events;homologous_mapping_event	ECNT=16;HCNT=14;MAX_ED=217;MIN_ED=119;NLOD=6.32;TLOD=10.15	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:13,3:0.188:1:2:0.333:0|1:11333140_G_A:423,93:5:8	0/0:21,0:0.00:0:0:.:0|1:11333140_G_A:721,0:13:8
chrY	11333195	.	G	A	.	clustered_events;homologous_mapping_event	ECNT=16;HCNT=14;MAX_ED=217;MIN_ED=119;NLOD=6.32;TLOD=6.38	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:14,2:0.125:1:1:0.500:0|1:11333140_G_A:422,63:6:8	0/0:21,0:0.00:0:0:.:0|1:11333140_G_A:681,0:13:8
chrY	11333256	.	G	A	.	clustered_events;homologous_mapping_event	ECNT=5;HCNT=3;MAX_ED=189;MIN_ED=9;NLOD=2.41;TLOD=11.42	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:5,4:0.429:4:0:1.00:0|1:11333256_G_A:160,123:2:3	0/0:9,0:0.00:0:0:.:0|1:11333256_G_A:314,0:4:5
chrY	11333265	.	G	A	.	clustered_events;homologous_mapping_event	ECNT=5;HCNT=3;MAX_ED=189;MIN_ED=9;NLOD=2.41;TLOD=7.34	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:5,2:0.333:2:0:1.00:0|1:11333256_G_A:170,62:2:3	0/0:10,0:0.00:0:0:.:0|1:11333256_G_A:352,0:5:5
chrY	11333440	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=5;HCNT=1;MAX_ED=189;MIN_ED=9;NLOD=4.26;TLOD=8.52	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:52,3:0.058:2:1:0.667:1844,94:35:17	0/0:73,3:0.041:3:0:1.00:2521,91:39:34
chrY	11333443	.	GCTGGATGAGCTC	G	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=5;HCNT=2;MAX_ED=189;MIN_ED=9;NLOD=8.76;TLOD=5.34	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:55,2:0.039:1:1:.:1943,73:37:18	0/0:75,2:0.027:2:0:.:2583,72:41:34
chrY	11333445	.	T	A	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=5;HCNT=5;MAX_ED=189;MIN_ED=9;NLOD=4.26;TLOD=5.34	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:55,2:0.039:1:1:0.500:1829,63:37:18	0/0:73,4:0.054:3:1:0.750:2391,107:40:33
chrY	11333497	.	A	G	.	alt_allele_in_normal;clustered_events;germline_risk	ECNT=7;HCNT=12;MAX_ED=114;MIN_ED=57;NLOD=1.53;TLOD=16.45	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:25,6:0.194:1:5:0.833:781,202:15:10	0/0:42,3:0.068:2:1:0.333:1311,96:22:20
chrY	11333554	.	A	T	.	clustered_events;multi_event_alt_allele_in_normal;t_lod_fstar	ECNT=7;HCNT=3;MAX_ED=114;MIN_ED=57;NLOD=8.76;TLOD=4.09	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:43,2:0.049:1:1:0.500:1336,66:25:18	0/0:46,1:0.024:1:0:0.00:1431,34:28:18
chrY	11333588	.	G	C	.	clustered_events;homologous_mapping_event	ECNT=7;HCNT=10;MAX_ED=114;MIN_ED=57;NLOD=11.44;TLOD=8.87	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:36,3:0.075:2:1:0.667:0|1:11333588_G_C:1260,96:18:18	0/0:40,0:0.00:0:0:.:0|1:11333588_G_C:1378,0:24:16
chrY	11333591	.	G	A	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=7;HCNT=3;MAX_ED=114;MIN_ED=57;NLOD=2.44;TLOD=5.60	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:38,2:0.053:1:1:0.500:0|1:11333591_G_A:1317,67:19:19	0/0:35,2:0.051:2:0:1.00:0|1:11333591_G_A:1212,69:20:15
chrY	11333600	.	G	T	.	alt_allele_in_normal;clustered_events;germline_risk;t_lod_fstar	ECNT=7;HCNT=3;MAX_ED=114;MIN_ED=57;NLOD=1.54;TLOD=5.62	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:35,2:0.054:1:1:0.500:0|1:11333591_G_A:1189,65:16:19	0/0:35,2:0.056:2:0:1.00:0|1:11333591_G_A:1224,63:22:13
chrY	11333603	.	G	A	.	alt_allele_in_normal;clustered_events;germline_risk;t_lod_fstar	ECNT=7;HCNT=3;MAX_ED=114;MIN_ED=57;NLOD=1.84;TLOD=5.65	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:35,2:0.056:1:1:0.500:0|1:11333591_G_A:1193,61:15:20	0/0:35,2:0.054:2:0:1.00:0|1:11333591_G_A:1213,61:22:13
chrY	11333611	.	G	T	.	clustered_events;homologous_mapping_event	ECNT=7;HCNT=10;MAX_ED=114;MIN_ED=57;NLOD=9.63;TLOD=9.22	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:28,3:0.097:2:1:0.667:0|1:11333588_G_C:945,95:11:17	0/0:33,0:0.00:0:0:.:0|1:11333588_G_C:1118,0:20:13
chrY	11333651	.	C	CCT	.	clustered_events;multi_event_alt_allele_in_normal	ECNT=3;HCNT=16;MAX_ED=82;MIN_ED=1;NLOD=8.87;TLOD=8.00	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:22,3:0.125:2:1:.:0|1:11333651_C_CCT:617,102:11:11	0/0:47,1:0.020:1:0:.:0|1:11333651_C_CCT:1384,35:29:18
chrY	11333652	.	GCA	G	.	clustered_events;multi_event_alt_allele_in_normal	ECNT=3;HCNT=16;MAX_ED=82;MIN_ED=1;NLOD=7.91;TLOD=7.73	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:22,3:0.063:2:1:.:0|1:11333651_C_CCT:705,98:11:11	0/0:43,1:0.011:1:0:.:0|1:11333651_C_CCT:1404,34:25:17
chrY	11333733	.	C	A	.	clustered_events;germline_risk;homologous_mapping_event	ECNT=3;HCNT=91;MAX_ED=82;MIN_ED=1;NLOD=1.81;TLOD=7.80	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,2:0.500:0:2:1.00:69,66:1:1	0/0:6,0:0.00:0:0:.:212,0:4:2
chr1_KI270709v1_random	40522	.	C	A	.	alt_allele_in_normal	ECNT=1;HCNT=13;MAX_ED=.;MIN_ED=.;NLOD=5.29;TLOD=8.21	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:32,4:0.114:2:2:0.500:1117,123:17:15	0/0:40,2:0.049:1:1:0.500:1342,61:22:18
chr1_KI270711v1_random	6009	.	T	C	.	alt_allele_in_normal;clustered_events	ECNT=2;HCNT=2;MAX_ED=11;MIN_ED=11;NLOD=5.44;TLOD=18.05	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:63,11:0.149:7:4:0.636:1993,351:32:31	0/0:78,4:0.049:1:3:0.250:2511,138:42:36
chr1_KI270711v1_random	6020	.	C	G	.	alt_allele_in_normal;clustered_events	ECNT=2;HCNT=2;MAX_ED=11;MIN_ED=11;NLOD=4.95;TLOD=25.78	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:37,13:0.260:6:7:0.538:1213,379:19:18	0/0:90,3:0.032:1:2:0.667:3034,86:46:44
chr1_KI270711v1_random	8083	.	G	A	.	alt_allele_in_normal	ECNT=1;HCNT=5;MAX_ED=.;MIN_ED=.;NLOD=34.46;TLOD=7.54	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:183,5:0.027:1:4:0.200:6316,162:85:98	0/0:165,7:0.041:2:5:0.286:5724,234:65:100
chr1_KI270711v1_random	8462	.	GA	G	.	alt_allele_in_normal;clustered_events	ECNT=2;HCNT=16;MAX_ED=117;MIN_ED=117;NLOD=32.09;RPA=4,3;RU=A;STR;TLOD=8.96	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:115,6:0.051:4:2:.:4024,219:66:49	0/0:130,2:0.015:1:1:.:4633,66:63:67
chr1_KI270711v1_random	8579	.	T	A	.	alt_allele_in_normal;clustered_events	ECNT=2;HCNT=16;MAX_ED=117;MIN_ED=117;NLOD=213.41;TLOD=10.75	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:782,9:0.012:4:5:0.444:23840,296:398:384	0/0:835,2:2.614e-03:2:0:1.00:25634,64:432:403
chr1_KI270711v1_random	8639	.	C	T	.	alt_allele_in_normal;t_lod_fstar	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=231.24;TLOD=4.00	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1358,7:6.189e-03:5:2:0.286:46811,226:700:658	0/0:1044,15:0.016:9:6:0.400:36416,508:522:522
chr1_KI270711v1_random	9905	.	A	G	.	germline_risk;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=4.40	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:6,2:0.250:0:2:1.00:196,71:2:4	0/0:46,0:0.00:0:0:.:1492,0:25:21
chr1_KI270711v1_random	20129	.	T	C	.	alt_allele_in_normal;clustered_events	ECNT=3;HCNT=30;MAX_ED=117;MIN_ED=98;NLOD=92.82;TLOD=19.69	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:556,27:0.039:22:5:0.815:18227,947:289:267	0/0:597,12:0.016:8:4:0.667:19594,424:309:288
chr1_KI270711v1_random	20227	.	G	T	.	alt_allele_in_normal;clustered_events	ECNT=3;HCNT=47;MAX_ED=117;MIN_ED=98;NLOD=24.34;TLOD=69.26	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:413,59:0.120:33:26:0.559:14235,1973:207:206	0/0:391,18:0.047:10:8:0.556:13426,613:197:194
chr1_KI270711v1_random	20246	.	T	C	.	alt_allele_in_normal;clustered_events	ECNT=3;HCNT=38;MAX_ED=117;MIN_ED=98;NLOD=55.52;TLOD=18.27	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:350,20:0.055:6:14:0.300:11928,714:179:171	0/0:302,7:0.023:4:3:0.571:10206,253:147:155
chr1_KI270711v1_random	20981	.	A	C	.	alt_allele_in_normal;t_lod_fstar	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=21.07;TLOD=4.29	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:108,5:0.044:3:2:0.400:3649,170:47:61	0/0:88,3:0.033:1:2:0.667:2979,105:46:42
chr1_KI270711v1_random	22895	.	G	A	.	alt_allele_in_normal;t_lod_fstar	ECNT=1;HCNT=12;MAX_ED=.;MIN_ED=.;NLOD=26.44;TLOD=6.13	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:170,4:0.024:3:1:0.750:4784,130:79:91	0/0:138,6:0.042:3:3:0.500:3893,192:82:56
chr1_KI270711v1_random	23053	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=4;HCNT=15;MAX_ED=81;MIN_ED=11;NLOD=115.95;TLOD=12.86	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:933,17:0.014:8:9:0.529:32548,574:500:433	0/0:779,32:0.036:16:16:0.500:27283,1077:432:347
chr1_KI270711v1_random	23064	.	A	G	.	alt_allele_in_normal;clustered_events	ECNT=4;HCNT=20;MAX_ED=81;MIN_ED=11;NLOD=94.62;TLOD=59.73	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:850,56:0.052:27:29:0.518:26945,1767:450:400	0/0:746,37:0.043:21:16:0.432:23988,1138:407:339
chr1_KI270711v1_random	23085	.	A	C	.	alt_allele_in_normal;clustered_events	ECNT=4;HCNT=20;MAX_ED=81;MIN_ED=11;NLOD=87.72;TLOD=65.84	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:768,45:0.058:20:25:0.556:24896,1589:400:368	0/0:744,25:0.036:13:12:0.480:24308,883:393:351
chr1_KI270711v1_random	23134	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=4;HCNT=9;MAX_ED=81;MIN_ED=11;NLOD=87.59;TLOD=7.40	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:458,12:0.025:3:9:0.250:15323,401:247:211	0/0:522,7:0.018:2:5:0.286:17524,232:282:240
chr1_KI270711v1_random	23265	.	T	G	.	alt_allele_in_normal	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=4.18;TLOD=11.98	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:32,7:0.179:2:5:0.286:1071,228:18:14	0/0:49,2:0.039:0:2:0.00:1635,69:33:16
chr1_KI270711v1_random	24417	.	G	A	.	alt_allele_in_normal	ECNT=1;HCNT=5;MAX_ED=.;MIN_ED=.;NLOD=30.87;TLOD=15.74	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:220,11:0.048:4:7:0.364:6591,356:116:104	0/0:257,11:0.041:4:7:0.364:7575,344:137:120
chr1_KI270711v1_random	27142	.	G	T	.	PASS	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.91;TLOD=10.01	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:12,5:0.294:1:4:0.200:409,152:7:5	0/0:13,0:0.00:0:0:.:425,0:3:10
chr1_KI270711v1_random	27321	.	C	T	.	alt_allele_in_normal	ECNT=1;HCNT=15;MAX_ED=.;MIN_ED=.;NLOD=26.28;TLOD=7.45	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:246,6:0.013:1:4:0.800:8164,170:116:128	0/0:299,48:0.080:25:23:0.479:10005,1595:114:183
chr1_KI270711v1_random	29435	.	G	A	.	alt_allele_in_normal	ECNT=1;HCNT=36;MAX_ED=.;MIN_ED=.;NLOD=26.70;TLOD=388.35	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:553,216:0.270:117:99:0.542:18678,7093:290:263	0/0:388,25:0.058:17:8:0.680:13260,829:186:202
chr1_KI270711v1_random	29654	.	C	T	.	clustered_events;t_lod_fstar	ECNT=2;HCNT=2;MAX_ED=17;MIN_ED=17;NLOD=3.01;TLOD=4.28	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:5,2:0.286:0:2:1.00:142,62:2:3	0/0:11,0:0.00:0:0:.:306,0:6:5
chr1_KI270711v1_random	29671	.	G	C	.	clustered_events;t_lod_fstar	ECNT=2;HCNT=2;MAX_ED=17;MIN_ED=17;NLOD=2.41;TLOD=4.08	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:7,2:0.222:0:2:0.00:252,74:4:3	0/0:10,0:0.00:0:0:.:337,0:5:5
chr1_KI270713v1_random	5564	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=2;HCNT=13;MAX_ED=25;MIN_ED=25;NLOD=11.31;TLOD=21.42	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:84,10:0.120:4:6:0.400:2585,300:35:49	0/0:100,3:0.021:1:2:0.333:2958,93:41:59
chr1_KI270713v1_random	5589	.	T	A	.	alt_allele_in_normal;clustered_events	ECNT=2;HCNT=13;MAX_ED=25;MIN_ED=25;NLOD=12.26;TLOD=13.50	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:94,8:0.086:4:4:0.500:2976,250:48:46	0/0:100,6:0.052:3:3:0.500:3183,173:44:56
chr9_KI270719v1_random	163330	.	T	C	.	PASS	ECNT=1;HCNT=3;MAX_ED=.;MIN_ED=.;NLOD=14.15;TLOD=8.33	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:58,3:0.050:2:1:0.667:1827,105:33:25	0/0:53,0:0.00:0:0:.:1663,0:26:27
chr9_KI270719v1_random	164571	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=2.41;TLOD=5.21	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:10,2:0.167:1:1:0.500:331,66:4:6	0/0:8,0:0.00:0:0:.:268,0:5:3
chr9_KI270720v1_random	16480	.	A	G	.	germline_risk	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.602;TLOD=8.90	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,4:0.500:2:2:0.500:139,134:2:2	0/0:4,0:0.00:0:0:.:138,0:1:3
chr9_KI270720v1_random	26217	.	TC	T	.	alt_allele_in_normal;t_lod_fstar	ECNT=1;HCNT=7;MAX_ED=.;MIN_ED=.;NLOD=3.45;RPA=4,3;RU=C;STR;TLOD=5.26	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:41,3:0.083:1:2:.:1336,99:18:23	0/0:59,6:0.103:4:2:.:1920,201:33:26
chr14_GL000009v2_random	60667	.	G	A	.	alt_allele_in_normal;clustered_events;germline_risk	ECNT=5;HCNT=1;MAX_ED=51;MIN_ED=9;NLOD=2.11;TLOD=11.20	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:5,3:0.375:1:2:0.333:0|1:60667_G_A:173,98:1:4	0/0:14,1:0.067:0:1:0.00:0|1:60667_G_A:463,34:8:6
chr14_GL000009v2_random	60676	.	A	C	.	alt_allele_in_normal;clustered_events	ECNT=5;HCNT=1;MAX_ED=51;MIN_ED=9;NLOD=2.41;TLOD=11.20	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:5,3:0.375:1:2:0.667:0|1:60667_G_A:163,105:1:4	0/0:17,1:0.056:0:1:1.00:0|1:60667_G_A:530,35:10:7
chr14_GL000009v2_random	60701	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=5;HCNT=1;MAX_ED=51;MIN_ED=9;NLOD=2.71;TLOD=14.87	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:7,4:0.364:1:3:0.250:0|1:60667_G_A:254,122:2:5	0/0:18,1:0.048:0:1:0.00:0|1:60667_G_A:634,31:12:6
chr14_GL000009v2_random	60702	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=5;HCNT=1;MAX_ED=51;MIN_ED=9;NLOD=2.71;TLOD=14.87	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:7,4:0.364:1:3:0.750:0|1:60667_G_A:242,127:2:5	0/0:19,1:0.050:0:1:1.00:0|1:60667_G_A:648,34:12:7
chr14_GL000009v2_random	60718	.	C	T	.	alt_allele_in_normal;clustered_events;germline_risk	ECNT=5;HCNT=1;MAX_ED=51;MIN_ED=9;NLOD=1.81;TLOD=10.85	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:7,3:0.300:1:2:0.667:0|1:60667_G_A:248,99:3:4	0/0:17,1:0.053:1:0:0.00:0|1:60667_G_A:586,33:11:6
chr14_GL000225v1_random	1162	.	C	T	.	clustered_events;t_lod_fstar	ECNT=2;HCNT=3;MAX_ED=78;MIN_ED=78;NLOD=2.41;TLOD=6.09	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:3,2:0.333:2:0:0.00:107,68:0:3	0/0:9,0:0.00:0:0:.:316,0:4:5
chr14_GL000225v1_random	1240	.	T	C	.	clustered_events;germline_risk;multi_event_alt_allele_in_normal	ECNT=2;HCNT=11;MAX_ED=78;MIN_ED=78;NLOD=1.82;TLOD=6.43	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:14,3:0.083:2:1:0.667:436,88:6:8	0/0:20,1:0.024:1:0:1.00:659,28:9:11
chr14_GL000225v1_random	1549	.	C	T	.	clustered_events;germline_risk	ECNT=2;HCNT=31;MAX_ED=3;MIN_ED=3;NLOD=1.81;TLOD=7.34	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:4,2:0.333:1:1:0.500:0|1:1549_C_T:123,63:3:1	0/0:6,0:0.00:0:0:.:0|1:1549_C_T:200,0:3:3
chr14_GL000225v1_random	1552	.	G	T	.	clustered_events;germline_risk	ECNT=2;HCNT=31;MAX_ED=3;MIN_ED=3;NLOD=1.81;TLOD=7.21	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:4,2:0.200:1:1:0.500:0|1:1549_C_T:138,64:3:1	0/0:6,0:0.00:0:0:.:0|1:1549_C_T:209,0:3:3
chr14_GL000225v1_random	1671	.	G	T	.	alt_allele_in_normal;germline_risk;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.617;TLOD=5.83	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:10,3:0.167:3:0:1.00:302,99:3:7	0/0:16,1:0.059:1:0:1.00:554,35:7:9
chr14_GL000225v1_random	1798	.	T	A	.	clustered_events;multi_event_alt_allele_in_normal	ECNT=5;HCNT=4;MAX_ED=37;MIN_ED=3;NLOD=6.64;TLOD=11.71	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:51,4:0.070:2:2:0.500:0|1:1798_T_A:1578,131:30:21	0/0:37,1:0.026:1:0:1.00:0|1:1798_T_A:1148,34:12:25
chr14_GL000225v1_random	1801	.	G	A	.	clustered_events;multi_event_alt_allele_in_normal	ECNT=5;HCNT=4;MAX_ED=37;MIN_ED=3;NLOD=7.54;TLOD=11.65	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:54,4:0.068:2:2:0.500:0|1:1798_T_A:1566,128:30:24	0/0:40,1:0.024:1:0:1.00:0|1:1798_T_A:1180,33:12:28
chr14_GL000225v1_random	1809	.	G	A	.	clustered_events;multi_event_alt_allele_in_normal	ECNT=5;HCNT=4;MAX_ED=37;MIN_ED=3;NLOD=8.14;TLOD=11.62	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:58,4:0.067:2:2:0.500:0|1:1798_T_A:2034,136:32:26	0/0:44,1:0.023:1:0:1.00:0|1:1798_T_A:1581,32:16:28
chr14_GL000225v1_random	1821	.	C	T	.	clustered_events;multi_event_alt_allele_in_normal	ECNT=5;HCNT=4;MAX_ED=37;MIN_ED=3;NLOD=9.65;TLOD=11.37	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:69,4:0.058:2:2:0.500:0|1:1798_T_A:2400,130:39:30	0/0:48,1:0.021:1:0:0.00:0|1:1798_T_A:1685,35:16:32
chr14_GL000225v1_random	1835	.	A	G	.	clustered_events;multi_event_alt_allele_in_normal	ECNT=5;HCNT=4;MAX_ED=37;MIN_ED=3;NLOD=10.55;TLOD=11.32	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:74,4:0.056:2:2:0.500:0|1:1798_T_A:2280,138:38:36	0/0:59,1:0.020:1:0:0.00:0|1:1798_T_A:1819,37:22:37
chr14_GL000225v1_random	8763	.	G	C	.	alt_allele_in_normal;clustered_events	ECNT=6;HCNT=10;MAX_ED=43;MIN_ED=10;NLOD=9.45;TLOD=24.76	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:174,18:0.085:9:9:0.500:5948,611:84:90	0/0:194,17:0.067:7:10:0.412:6601,600:99:95
chr14_GL000225v1_random	8773	.	G	T	.	alt_allele_in_normal;clustered_events	ECNT=6;HCNT=12;MAX_ED=43;MIN_ED=10;NLOD=5.57;TLOD=42.42	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:162,18:0.088:9:9:0.500:5683,572:75:87	0/0:190,17:0.066:7:10:0.412:6678,544:99:91
chr14_GL000225v1_random	8777	.	C	A	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=6;HCNT=5;MAX_ED=43;MIN_ED=10;NLOD=36.42;TLOD=4.40	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:175,2:0.014:2:0:0.00:0|1:8777_C_A:5320,68:82:93	0/0:198,3:0.017:3:0:0.00:0|1:8777_C_A:6242,102:103:95
chr14_GL000225v1_random	8782	.	C	T	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=6;HCNT=5;MAX_ED=43;MIN_ED=10;NLOD=36.41;TLOD=4.41	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:168,2:0.014:2:0:0.00:0|1:8777_C_A:5767,70:79:89	0/0:191,3:0.017:3:0:0.00:0|1:8777_C_A:6537,105:99:92
chr14_GL000225v1_random	8797	.	A	G	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=6;HCNT=5;MAX_ED=43;MIN_ED=10;NLOD=29.19;TLOD=4.49	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:134,2:0.015:2:0:0.00:0|1:8777_C_A:4196,70:69:65	0/0:153,3:0.020:3:0:0.00:0|1:8777_C_A:4833,96:85:68
chr14_GL000225v1_random	8806	.	T	C	.	alt_allele_in_normal;clustered_events;germline_risk	ECNT=6;HCNT=5;MAX_ED=43;MIN_ED=10;NLOD=1.33;TLOD=10.54	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:101,4:0.036:3:1:0.750:3237,118:53:48	0/0:122,10:0.068:7:3:0.700:3959,299:67:55
chr14_GL000225v1_random	30211	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=2;HCNT=4;MAX_ED=7;MIN_ED=7;NLOD=5.94;TLOD=37.71	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:138,13:0.098:5:8:0.615:0|1:30211_C_T:4635,425:56:82	0/0:94,5:0.055:2:3:0.600:0|1:30211_C_T:3221,159:38:56
chr14_GL000225v1_random	30218	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=2;HCNT=4;MAX_ED=7;MIN_ED=7;NLOD=9.99;TLOD=34.77	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:145,11:0.088:4:7:0.636:0|1:30211_C_T:4526,321:58:87	0/0:103,4:0.043:2:2:0.500:0|1:30211_C_T:3205,127:39:64
chr14_GL000225v1_random	30365	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=16;HCNT=2;MAX_ED=69;MIN_ED=1;NLOD=39.43;TLOD=9.97	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:153,3:0.026:1:2:0.333:0|1:30365_G_A:4721,93:76:77	0/0:130,2:0.015:2:0:1.00:0|1:30365_G_A:3861,64:71:59
chr14_GL000225v1_random	30366	.	C	G	.	alt_allele_in_normal;clustered_events	ECNT=16;HCNT=2;MAX_ED=69;MIN_ED=1;NLOD=30.43;TLOD=7.10	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:151,3:0.020:2:1:0.333:0|1:30366_C_G:5085,99:74:77	0/0:130,2:0.015:2:0:0.00:0|1:30366_C_G:4392,70:71:59
chr14_GL000225v1_random	30367	.	C	G	.	alt_allele_in_normal;clustered_events	ECNT=16;HCNT=2;MAX_ED=69;MIN_ED=1;NLOD=31.34;TLOD=7.07	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:149,3:0.019:2:1:0.333:0|1:30366_C_G:5039,99:74:75	0/0:132,2:0.014:2:0:0.00:0|1:30366_C_G:4398,70:70:62
chr14_GL000225v1_random	30368	.	T	G	.	alt_allele_in_normal;clustered_events;germline_risk;triallelic_site	ECNT=16;HCNT=5;MAX_ED=69;MIN_ED=1;NLOD=1.34;TLOD=21.79	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:137,9:0.027:5:4:0.556:0|1:30368_T_G:4519,283:68:69	0/0:120,10:0.041:6:4:0.600:0|1:30368_T_G:3941,339:63:57
chr14_GL000225v1_random	30372	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=16;HCNT=3;MAX_ED=69;MIN_ED=1;NLOD=13.94;TLOD=12.97	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:145,5:0.033:2:3:0.600:0|1:30372_C_T:4828,162:71:74	0/0:127,7:0.050:4:3:0.429:0|1:30372_C_T:4282,233:67:60
chr14_GL000225v1_random	30373	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=16;HCNT=2;MAX_ED=69;MIN_ED=1;NLOD=39.85;TLOD=9.73	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:147,5:0.015:2:3:0.600:0|1:30365_G_A:3754,159:61:61	0/0:132,2:8.065e-03:2:0:0.00:0|1:30365_G_A:3427,66:60:50
chr14_GL000225v1_random	30379	.	C	G	.	alt_allele_in_normal;clustered_events	ECNT=16;HCNT=2;MAX_ED=69;MIN_ED=1;NLOD=32.24;TLOD=9.89	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:154,3:0.025:2:1:0.333:0|1:30366_C_G:5172,90:76:78	0/0:133,2:0.014:2:0:0.00:0|1:30366_C_G:4475,57:70:63
chr14_GL000225v1_random	30385	.	C	G	.	alt_allele_in_normal;clustered_events	ECNT=16;HCNT=3;MAX_ED=69;MIN_ED=1;NLOD=21.45;TLOD=9.87	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:160,4:0.025:2:2:0.500:0|1:30372_C_T:5348,121:77:83	0/0:139,5:0.040:3:2:0.400:0|1:30372_C_T:4538,173:71:68
chr14_GL000225v1_random	30386	.	A	G	.	alt_allele_in_normal;clustered_events	ECNT=16;HCNT=5;MAX_ED=69;MIN_ED=1;NLOD=3.45;TLOD=32.04	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:155,9:0.068:5:4:0.444:0|1:30368_T_G:4696,288:73:82	0/0:137,8:0.067:5:3:0.375:0|1:30368_T_G:4123,258:69:68
chr14_GL000225v1_random	30393	.	T	C	.	alt_allele_in_normal;clustered_events	ECNT=16;HCNT=2;MAX_ED=69;MIN_ED=1;NLOD=45.15;TLOD=9.76	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:159,5:0.023:2:3:0.400:0|1:30365_G_A:5118,162:78:81	0/0:146,2:0.013:2:0:1.00:0|1:30365_G_A:4712,66:73:73
chr14_GL000225v1_random	30398	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=16;HCNT=2;MAX_ED=69;MIN_ED=1;NLOD=34.36;TLOD=18.88	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:156,7:0.042:3:4:0.571:0|1:30366_C_G:4865,235:77:79	0/0:149,3:0.019:1:2:0.667:0|1:30366_C_G:4777,103:80:69
chr14_GL000225v1_random	30404	.	T	G	.	alt_allele_in_normal;clustered_events	ECNT=16;HCNT=2;MAX_ED=69;MIN_ED=1;NLOD=45.75;TLOD=9.82	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:161,3:0.024:2:1:0.667:0|1:30365_G_A:5346,94:77:84	0/0:159,2:0.013:2:0:1.00:0|1:30365_G_A:5292,55:82:77
chr14_GL000225v1_random	30416	.	C	A	.	alt_allele_in_normal;clustered_events	ECNT=16;HCNT=2;MAX_ED=69;MIN_ED=1;NLOD=36.15;TLOD=15.78	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:157,6:0.036:2:4:0.667:0|1:30366_C_G:5005,198:80:77	0/0:156,2:0.013:0:2:1.00:0|1:30366_C_G:5021,67:80:76
chr14_GL000225v1_random	30417	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=16;HCNT=2;MAX_ED=69;MIN_ED=1;NLOD=36.45;TLOD=15.74	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:154,6:0.036:2:4:0.333:0|1:30366_C_G:4688,203:76:78	0/0:153,2:0.013:0:2:0.00:0|1:30366_C_G:4580,68:79:74
chr14_GL000225v1_random	30431	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=16;HCNT=2;MAX_ED=69;MIN_ED=1;NLOD=34.35;TLOD=12.85	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:153,5:0.031:2:3:0.400:0|1:30366_C_G:4852,159:69:84	0/0:148,2:0.014:0:2:0.00:0|1:30366_C_G:4757,64:74:74
chr14_GL000225v1_random	30434	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=16;HCNT=2;MAX_ED=69;MIN_ED=1;NLOD=34.35;TLOD=12.94	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:156,5:0.033:2:3:0.400:0|1:30366_C_G:4804,162:72:84	0/0:150,2:0.014:0:2:0.00:0|1:30366_C_G:4567,64:76:74
chr14_GL000225v1_random	30790	.	C	T	.	clustered_events	ECNT=2;HCNT=4;MAX_ED=8;MIN_ED=8;NLOD=4.52;TLOD=9.83	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:17,3:0.150:2:1:0.333:555,95:9:8	0/0:16,0:0.00:0:0:.:530,0:7:9
chr14_GL000225v1_random	30798	.	T	C	.	clustered_events	ECNT=2;HCNT=8;MAX_ED=8;MIN_ED=8;NLOD=4.51;TLOD=9.98	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:16,3:0.167:2:1:0.667:485,97:9:7	0/0:16,0:0.00:0:0:.:518,0:7:9
chr14_GL000225v1_random	31220	.	G	A	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=7;HCNT=4;MAX_ED=178;MIN_ED=1;NLOD=6.32;TLOD=4.23	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:23,2:0.080:1:1:0.500:694,63:13:10	0/0:21,1:0.045:0:1:0.00:710,32:12:9
chr14_GL000225v1_random	31221	.	C	CA	.	alt_allele_in_normal;clustered_events	ECNT=7;HCNT=8;MAX_ED=178;MIN_ED=1;NLOD=6.32;RPA=1,2;RU=A;STR;TLOD=17.27	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:20,5:0.217:2:3:.:0|1:31221_C_CA:677,173:11:9	0/0:21,1:0.045:0:1:.:0|1:31221_C_CA:738,35:12:9
chr14_GL000225v1_random	31223	.	G	C	.	alt_allele_in_normal;clustered_events	ECNT=7;HCNT=8;MAX_ED=178;MIN_ED=1;NLOD=6.32;TLOD=17.17	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:20,5:0.208:2:3:0.400:0|1:31221_C_CA:670,167:11:9	0/0:21,1:0.045:0:1:0.00:0|1:31221_C_CA:734,33:12:9
chr14_GL000225v1_random	31294	.	G	C	.	clustered_events;homologous_mapping_event;t_lod_fstar	ECNT=7;HCNT=3;MAX_ED=178;MIN_ED=1;NLOD=7.22;TLOD=5.94	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:25,2:0.077:1:1:0.500:0|1:31294_G_C:840,68:11:14	0/0:23,0:0.00:0:0:.:0|1:31294_G_C:804,0:11:12
chr14_GL000225v1_random	31297	.	TGTG	T	.	clustered_events;homologous_mapping_event;t_lod_fstar	ECNT=7;HCNT=3;MAX_ED=178;MIN_ED=1;NLOD=7.53;TLOD=5.84	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:27,2:0.069:1:1:.:0|1:31294_G_C:825,57:11:16	0/0:28,0:0.00:0:0:.:0|1:31294_G_C:870,0:14:14
chr14_GL000225v1_random	31304	.	T	G	.	alt_allele_in_normal;clustered_events	ECNT=7;HCNT=3;MAX_ED=178;MIN_ED=1;NLOD=3.33;TLOD=9.36	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:24,3:0.107:1:2:0.333:0|1:31294_G_C:736,94:9:15	0/0:28,1:0.038:1:0:1.00:0|1:31294_G_C:883,31:14:14
chr14_GL000225v1_random	31398	.	T	G	.	alt_allele_in_normal;clustered_events;germline_risk	ECNT=7;HCNT=51;MAX_ED=178;MIN_ED=1;NLOD=1.22;TLOD=18.56	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:12,5:0.333:1:4:0.200:370,131:5:7	0/0:18,1:0.053:0:1:0.00:553,34:9:9
chr14_GL000225v1_random	36761	.	C	T	.	alt_allele_in_normal	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=19.62;TLOD=25.42	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:201,20:0.124:10:10:0.500:6184,668:102:99	0/0:198,12:0.092:3:9:0.750:6057,393:104:94
chr14_GL000225v1_random	37202	.	C	T	.	clustered_events;homologous_mapping_event	ECNT=4;HCNT=3;MAX_ED=32;MIN_ED=1;NLOD=3.91;TLOD=9.76	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:18,3:0.143:2:1:0.333:0|1:37202_C_T:594,91:9:9	0/0:12,0:0.00:0:0:.:0|1:37202_C_T:378,0:7:5
chr14_GL000225v1_random	37203	.	A	G	.	clustered_events;homologous_mapping_event	ECNT=4;HCNT=3;MAX_ED=32;MIN_ED=1;NLOD=4.52;TLOD=9.76	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:18,3:0.143:2:1:0.333:0|1:37202_C_T:550,101:9:9	0/0:12,0:0.00:0:0:.:0|1:37202_C_T:348,0:7:5
chr14_GL000225v1_random	37227	.	C	G	.	clustered_events;homologous_mapping_event	ECNT=4;HCNT=23;MAX_ED=32;MIN_ED=1;NLOD=5.72;TLOD=13.75	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:15,4:0.211:2:2:0.500:0|1:37227_C_G:520,138:7:8	0/0:19,0:0.00:0:0:.:0|1:37227_C_G:686,0:11:8
chr14_GL000225v1_random	37234	.	G	A	.	clustered_events;homologous_mapping_event	ECNT=4;HCNT=23;MAX_ED=32;MIN_ED=1;NLOD=5.72;TLOD=9.98	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:14,2:0.167:2:0:1.00:0|1:37227_C_G:475,63:6:8	0/0:19,0:0.00:0:0:.:0|1:37227_C_G:657,0:11:8
chr14_GL000225v1_random	42952	.	A	T	.	alt_allele_in_normal;clustered_events	ECNT=6;HCNT=2;MAX_ED=36;MIN_ED=16;NLOD=63.86;TLOD=11.98	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:256,5:0.021:4:1:0.200:0|1:42952_A_T:8345,161:120:136	0/0:278,3:0.011:2:1:0.333:0|1:42952_A_T:9020,103:139:139
chr14_GL000225v1_random	42968	.	A	G	.	alt_allele_in_normal;clustered_events	ECNT=6;HCNT=2;MAX_ED=36;MIN_ED=16;NLOD=21.58;TLOD=35.13	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:293,19:0.063:7:12:0.632:9320,587:139:154	0/0:333,20:0.057:12:8:0.400:10455,582:169:164
chr14_GL000225v1_random	42971	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=6;HCNT=2;MAX_ED=36;MIN_ED=16;NLOD=76.50;TLOD=17.41	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:305,11:0.026:9:2:0.818:0|1:42952_A_T:9363,364:140:165	0/0:353,5:0.015:3:2:0.600:0|1:42952_A_T:10548,167:180:173
chr14_GL000225v1_random	42974	.	A	T	.	alt_allele_in_normal;clustered_events	ECNT=6;HCNT=2;MAX_ED=36;MIN_ED=16;NLOD=79.81;TLOD=17.35	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:307,11:0.026:9:2:0.182:0|1:42952_A_T:9789,379:141:166	0/0:359,5:0.014:3:2:0.400:0|1:42952_A_T:11213,171:183:176
chr14_GL000225v1_random	42978	.	C	A	.	alt_allele_in_normal;clustered_events	ECNT=6;HCNT=11;MAX_ED=36;MIN_ED=16;NLOD=22.42;TLOD=10.98	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:259,7:0.016:0:0:.:8853,0:118:141	0/0:313,20:0.033:3:1:0.250:10396,137:159:153
chr14_GL000225v1_random	42988	.	G	C	.	alt_allele_in_normal;clustered_events	ECNT=6;HCNT=2;MAX_ED=36;MIN_ED=16;NLOD=73.19;TLOD=17.61	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:269,11:0.028:9:2:0.818:0|1:42952_A_T:9059,346:118:151	0/0:339,5:0.015:3:2:0.600:0|1:42952_A_T:11431,153:165:174
chr14_GL000225v1_random	43002	.	T	A	.	alt_allele_in_normal;clustered_events	ECNT=6;HCNT=1;MAX_ED=39;MIN_ED=9;NLOD=64.79;TLOD=6.39	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:271,3:0.012:1:2:0.333:0|1:43002_T_A:8901,101:123:148	0/0:343,7:0.021:3:4:0.429:0|1:43002_T_A:11210,234:178:165
chr14_GL000225v1_random	43011	.	A	G	.	alt_allele_in_normal;clustered_events	ECNT=6;HCNT=1;MAX_ED=39;MIN_ED=9;NLOD=64.79;TLOD=6.37	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:256,2:0.011:1:1:0.500:0|1:43002_T_A:8312,58:111:145	0/0:317,7:0.021:3:4:0.571:0|1:43002_T_A:10336,242:166:151
chr14_GL000225v1_random	43013	.	A	C	.	alt_allele_in_normal;clustered_events	ECNT=6;HCNT=5;MAX_ED=39;MIN_ED=9;NLOD=35.49;TLOD=45.98	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:240,18:0.062:12:6:0.333:0|1:43013_A_C:7721,528:104:136	0/0:299,16:0.044:12:4:0.250:0|1:43013_A_C:9763,486:155:144
chr14_GL000225v1_random	43015	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=6;HCNT=2;MAX_ED=39;MIN_ED=9;NLOD=62.09;TLOD=11.83	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:245,6:0.020:3:3:0.500:8166,195:111:134	0/0:301,5:0.016:4:1:0.800:10239,157:159:142
chr14_GL000225v1_random	43038	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=6;HCNT=5;MAX_ED=39;MIN_ED=9;NLOD=25.06;TLOD=25.46	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:146,9:0.056:8:1:0.889:0|1:43013_A_C:4832,291:67:79	0/0:197,11:0.051:8:3:0.727:0|1:43013_A_C:6471,358:97:100
chr14_GL000225v1_random	43041	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=6;HCNT=10;MAX_ED=39;MIN_ED=9;NLOD=27.20;TLOD=15.98	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:145,4:0.039:2:2:0.500:4432,129:69:76	0/0:188,5:0.054:4:1:0.800:6008,155:92:96
chr14_GL000225v1_random	43306	.	G	A	.	alt_allele_in_normal;clustered_events;germline_risk	ECNT=3;HCNT=4;MAX_ED=58;MIN_ED=50;NLOD=1.33;TLOD=29.71	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:69,10:0.126:1:9:0.100:2259,322:37:32	0/0:64,6:0.079:2:4:0.333:2102,187:28:36
chr14_GL000225v1_random	43356	.	G	T	.	clustered_events;multi_event_alt_allele_in_normal	ECNT=3;HCNT=6;MAX_ED=58;MIN_ED=50;NLOD=7.47;TLOD=16.55	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:24,5:0.161:2:3:0.400:0|1:43356_G_T:792,172:10:14	0/0:34,1:0.027:1:0:1.00:0|1:43356_G_T:1152,32:19:15
chr14_GL000225v1_random	43364	.	C	A	.	clustered_events;homologous_mapping_event	ECNT=3;HCNT=6;MAX_ED=58;MIN_ED=50;NLOD=7.83;TLOD=16.90	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:21,5:0.139:2:3:0.600:0|1:43356_G_T:263,161:4:5	0/0:30,0:0.00:0:0:.:0|1:43356_G_T:438,0:9:6
chr14_GL000225v1_random	43783	.	G	A	.	clustered_events;germline_risk	ECNT=2;HCNT=7;MAX_ED=22;MIN_ED=22;NLOD=1.80;TLOD=8.10	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:10,4:0.250:3:1:0.750:300,128:3:7	0/0:6,0:0.00:0:0:.:176,0:4:2
chr14_GL000225v1_random	43805	.	C	G	.	clustered_events;germline_risk	ECNT=2;HCNT=7;MAX_ED=22;MIN_ED=22;NLOD=1.20;TLOD=8.10	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:10,3:0.300:0:3:1.00:296,93:7:3	0/0:4,0:0.00:0:0:.:125,0:2:2
chr14_GL000225v1_random	44009	.	C	G	.	alt_allele_in_normal;clustered_events;germline_risk	ECNT=2;HCNT=4;MAX_ED=77;MIN_ED=77;NLOD=1.45;TLOD=20.99	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:23,7:0.226:4:3:0.429:782,241:8:15	0/0:38,2:0.057:1:1:0.500:1302,70:19:19
chr14_GL000225v1_random	44086	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=2;HCNT=12;MAX_ED=77;MIN_ED=77;NLOD=4.27;TLOD=24.00	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:56,11:0.169:7:4:0.364:1847,349:28:28	0/0:45,5:0.078:3:2:0.400:1444,157:27:18
chr14_GL000225v1_random	52966	.	G	A	.	alt_allele_in_normal;germline_risk	ECNT=1;HCNT=6;MAX_ED=.;MIN_ED=.;NLOD=1.02;TLOD=27.34	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:82,12:0.140:3:9:0.250:2387,377:40:42	0/0:82,7:0.089:2:5:0.286:2428,226:46:36
chr14_GL000225v1_random	53036	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=3;HCNT=15;MAX_ED=14;MIN_ED=2;NLOD=6.98;TLOD=20.85	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:84,7:0.079:4:3:0.571:0|1:53036_G_A:2886,224:43:41	0/0:82,4:0.048:2:2:0.500:0|1:53036_G_A:2797,133:40:42
chr14_GL000225v1_random	53038	.	T	A	.	alt_allele_in_normal;clustered_events	ECNT=3;HCNT=15;MAX_ED=14;MIN_ED=2;NLOD=8.19;TLOD=20.82	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:82,7:0.078:4:3:0.571:0|1:53036_G_A:2600,211:43:39	0/0:81,4:0.045:2:2:0.500:0|1:53036_G_A:2565,126:39:42
chr14_GL000225v1_random	53050	.	A	G	.	alt_allele_in_normal;clustered_events	ECNT=3;HCNT=15;MAX_ED=14;MIN_ED=2;NLOD=7.59;TLOD=20.52	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:86,7:0.071:4:3:0.429:0|1:53036_G_A:2841,232:45:41	0/0:83,4:0.047:2:2:0.500:0|1:53036_G_A:2709,140:39:44
chr14_GL000225v1_random	53432	.	C	G	.	PASS	ECNT=1;HCNT=11;MAX_ED=.;MIN_ED=.;NLOD=6.84;TLOD=8.11	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:19,3:0.143:0:3:1.00:649,100:16:3	0/0:24,0:0.00:0:0:.:796,0:12:12
chr14_GL000225v1_random	53649	.	G	A	.	alt_allele_in_normal;clustered_events;germline_risk	ECNT=5;HCNT=1;MAX_ED=94;MIN_ED=7;NLOD=1.52;TLOD=20.58	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:21,6:0.207:3:3:0.500:0|1:53649_G_A:697,188:10:11	0/0:18,1:0.050:0:1:0.00:0|1:53649_G_A:588,33:10:8
chr14_GL000225v1_random	53656	.	C	T	.	alt_allele_in_normal;clustered_events;germline_risk	ECNT=5;HCNT=1;MAX_ED=94;MIN_ED=7;NLOD=0.918;TLOD=20.79	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:19,6:0.222:3:3:0.500:0|1:53649_G_A:565,198:10:9	0/0:18,1:0.056:0:1:1.00:0|1:53649_G_A:533,34:10:8
chr14_GL000225v1_random	53719	.	T	C	.	clustered_events;germline_risk;homologous_mapping_event	ECNT=5;HCNT=78;MAX_ED=94;MIN_ED=7;NLOD=2.11;TLOD=10.57	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:8,3:0.250:2:1:0.667:0|1:53719_T_C:268,106:2:6	0/0:7,0:0.00:0:0:.:0|1:53719_T_C:224,0:2:5
chr14_GL000225v1_random	53738	.	A	G	.	clustered_events;germline_risk;homologous_mapping_event	ECNT=5;HCNT=78;MAX_ED=94;MIN_ED=7;NLOD=1.81;TLOD=18.35	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:10,3:0.333:2:1:0.333:0|1:53719_T_C:325,101:4:6	0/0:6,0:0.00:0:0:.:0|1:53719_T_C:186,0:1:5
chr14_GL000225v1_random	53743	.	T	G	.	clustered_events;germline_risk;homologous_mapping_event	ECNT=5;HCNT=78;MAX_ED=94;MIN_ED=7;NLOD=1.81;TLOD=18.74	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:8,5:0.385:3:2:0.600:0|1:53719_T_C:264,171:3:5	0/0:6,0:0.00:0:0:.:0|1:53719_T_C:192,0:1:5
chr14_GL000225v1_random	53749	.	A	T	.	clustered_events;germline_risk;homologous_mapping_event	ECNT=12;HCNT=8;MAX_ED=79;MIN_ED=4;NLOD=1.46;TLOD=19.70	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:3,5:0.417:3:2:0.400:0|1:53749_A_T:66,162:2:0	0/0:5,0:0.00:0:0:.:0|1:53749_A_T:33,0:1:0
chr14_GL000225v1_random	53753	.	T	G	.	clustered_events;homologous_mapping_event	ECNT=12;HCNT=8;MAX_ED=79;MIN_ED=4;NLOD=2.41;TLOD=22.40	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:10,5:0.375:3:2:0.600:0|1:53749_A_T:316,168:4:6	0/0:8,0:0.00:0:0:.:0|1:53749_A_T:249,0:2:6
chr14_GL000225v1_random	53760	.	A	G	.	clustered_events;germline_risk;homologous_mapping_event	ECNT=12;HCNT=8;MAX_ED=79;MIN_ED=4;NLOD=2.11;TLOD=18.35	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:10,5:0.333:4:1:0.200:0|1:53749_A_T:288,168:6:4	0/0:7,0:0.00:0:0:.:0|1:53749_A_T:217,0:2:5
chr14_GL000225v1_random	53761	.	G	T	.	clustered_events;homologous_mapping_event	ECNT=12;HCNT=8;MAX_ED=79;MIN_ED=4;NLOD=2.41;TLOD=18.18	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:10,5:0.313:4:1:0.800:0|1:53749_A_T:308,161:6:4	0/0:7,0:0.00:0:0:.:0|1:53749_A_T:235,0:2:5
chr14_GL000225v1_random	53781	.	G	A	.	clustered_events;germline_risk;homologous_mapping_event	ECNT=12;HCNT=8;MAX_ED=79;MIN_ED=4;NLOD=1.71;TLOD=18.94	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:6,5:0.294:3:2:0.600:0|1:53749_A_T:144,129:4:2	0/0:6,0:0.00:0:0:.:0|1:53749_A_T:136,0:2:2
chr14_GL000225v1_random	53782	.	G	T	.	clustered_events;homologous_mapping_event	ECNT=12;HCNT=8;MAX_ED=79;MIN_ED=4;NLOD=2.41;TLOD=18.35	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:10,5:0.333:3:2:0.600:0|1:53749_A_T:302,128:5:5	0/0:8,0:0.00:0:0:.:0|1:53749_A_T:272,0:2:6
chr14_GL000225v1_random	53787	.	C	G	.	clustered_events;homologous_mapping_event	ECNT=12;HCNT=8;MAX_ED=79;MIN_ED=4;NLOD=2.41;TLOD=18.54	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:9,5:0.357:3:2:0.400:0|1:53749_A_T:305,139:5:4	0/0:8,0:0.00:0:0:.:0|1:53749_A_T:273,0:2:6
chr14_GL000225v1_random	53789	.	G	A	.	clustered_events;homologous_mapping_event	ECNT=12;HCNT=8;MAX_ED=79;MIN_ED=4;NLOD=2.41;TLOD=18.54	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:9,4:0.357:2:2:0.500:0|1:53749_A_T:276,100:5:4	0/0:8,0:0.00:0:0:.:0|1:53749_A_T:262,0:2:6
chr14_GL000225v1_random	53800	.	A	T	.	clustered_events;germline_risk;homologous_mapping_event	ECNT=12;HCNT=8;MAX_ED=79;MIN_ED=4;NLOD=1.81;TLOD=14.52	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:9,4:0.308:2:2:0.500:0|1:53749_A_T:275,116:5:4	0/0:6,0:0.00:0:0:.:0|1:53749_A_T:197,0:2:4
chr14_GL000225v1_random	53801	.	G	A	.	clustered_events;germline_risk;homologous_mapping_event	ECNT=12;HCNT=8;MAX_ED=79;MIN_ED=4;NLOD=1.81;TLOD=14.52	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:9,4:0.308:2:2:0.500:0|1:53749_A_T:300,109:5:4	0/0:6,0:0.00:0:0:.:0|1:53749_A_T:207,0:2:4
chr14_GL000225v1_random	53815	.	C	A	.	clustered_events;germline_risk;homologous_mapping_event	ECNT=12;HCNT=8;MAX_ED=79;MIN_ED=4;NLOD=2.11;TLOD=14.52	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:9,3:0.308:2:1:0.333:0|1:53749_A_T:304,87:4:5	0/0:7,0:0.00:0:0:.:0|1:53749_A_T:238,0:2:5
chr14_GL000225v1_random	53828	.	C	T	.	clustered_events;germline_risk;homologous_mapping_event	ECNT=12;HCNT=8;MAX_ED=79;MIN_ED=4;NLOD=1.51;TLOD=6.65	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:8,2:0.167:1:1:0.500:0|1:53749_A_T:247,59:4:4	0/0:6,0:0.00:0:0:.:0|1:53749_A_T:193,0:1:5
chr14_GL000225v1_random	54004	.	C	T	.	alt_allele_in_normal;clustered_events;germline_risk	ECNT=20;HCNT=4;MAX_ED=204;MIN_ED=23;NLOD=1.57;TLOD=6.46	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:63,3:0.046:2:1:0.333:2028,103:28:35	0/0:40,3:0.070:2:1:0.333:1324,100:18:22
chr14_GL000225v1_random	54027	.	G	A	.	clustered_events;multi_event_alt_allele_in_normal;t_lod_fstar	ECNT=20;HCNT=10;MAX_ED=204;MIN_ED=23;NLOD=11.68;TLOD=4.95	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:82,2:0.025:1:1:0.500:2834,65:42:40	0/0:52,1:0.019:0:1:0.00:1804,35:25:27
chr14_GL000225v1_random	54040	.	T	A	.	alt_allele_in_normal;clustered_events	ECNT=20;HCNT=16;MAX_ED=204;MIN_ED=23;NLOD=2.45;TLOD=27.95	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:85,12:0.103:4:8:0.333:0|1:54040_T_A:2784,393:47:38	0/0:53,4:0.056:0:4:0.00:0|1:54040_T_A:1752,127:26:27
chr14_GL000225v1_random	54050	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=20;HCNT=16;MAX_ED=204;MIN_ED=23;NLOD=2.75;TLOD=27.57	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:94,14:0.095:4:10:0.714:0|1:54040_T_A:3134,455:53:41	0/0:55,4:0.053:0:4:1.00:0|1:54040_T_A:1890,127:23:32
chr14_GL000225v1_random	54056	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=20;HCNT=16;MAX_ED=204;MIN_ED=23;NLOD=3.66;TLOD=30.84	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:104,15:0.099:5:10:0.667:0|1:54040_T_A:3319,470:57:47	0/0:61,5:0.050:0:5:1.00:0|1:54040_T_A:1924,153:27:34
chr14_GL000225v1_random	54068	.	G	C	.	alt_allele_in_normal;clustered_events	ECNT=20;HCNT=16;MAX_ED=204;MIN_ED=23;NLOD=3.66;TLOD=33.93	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:115,15:0.099:4:11:0.267:0|1:54040_T_A:3877,498:66:49	0/0:62,4:0.050:0:4:0.00:0|1:54040_T_A:2124,137:33:29
chr14_GL000225v1_random	54069	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=20;HCNT=13;MAX_ED=204;MIN_ED=23;NLOD=9.08;TLOD=18.84	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:115,13:0.080:3:10:0.769:3582,394:65:50	0/0:66,3:0.033:0:3:1.00:2029,96:35:31
chr14_GL000225v1_random	54074	.	T	C	.	alt_allele_in_normal;clustered_events;germline_risk	ECNT=20;HCNT=16;MAX_ED=204;MIN_ED=23;NLOD=1.25;TLOD=37.14	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:94,13:0.064:4:9:0.308:0|1:54040_T_A:2986,451:52:42	0/0:52,4:0.030:0:4:0.00:0|1:54040_T_A:1700,134:30:22
chr14_GL000225v1_random	54087	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=20;HCNT=16;MAX_ED=204;MIN_ED=23;NLOD=5.46;TLOD=33.93	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:101,12:0.099:4:8:0.667:0|1:54040_T_A:3449,382:61:40	0/0:64,3:0.045:0:3:1.00:0|1:54040_T_A:2182,71:34:30
chr14_GL000225v1_random	54089	.	T	G	.	alt_allele_in_normal;clustered_events	ECNT=20;HCNT=16;MAX_ED=204;MIN_ED=23;NLOD=5.46;TLOD=37.59	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:104,10:0.110:3:7:0.300:0|1:54040_T_A:3400,324:62:42	0/0:65,2:0.045:0:2:0.00:0|1:54040_T_A:2123,65:34:31
chr14_GL000225v1_random	54113	.	TCAGGTC	T	.	alt_allele_in_normal;clustered_events	ECNT=20;HCNT=16;MAX_ED=204;MIN_ED=23;NLOD=10.27;TLOD=20.65	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:101,5:0.074:1:4:.:0|1:54040_T_A:3095,169:63:38	0/0:65,2:0.030:0:2:.:0|1:54040_T_A:1967,61:38:27
chr14_GL000225v1_random	54123	.	G	GT	.	alt_allele_in_normal;clustered_events	ECNT=20;HCNT=16;MAX_ED=204;MIN_ED=23;NLOD=8.16;TLOD=14.11	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:90,5:0.056:1:4:.:0|1:54040_T_A:3030,171:54:36	0/0:57,2:0.034:0:2:.:0|1:54040_T_A:1911,64:36:21
chr14_GL000225v1_random	54128	.	G	GCCA	.	alt_allele_in_normal;clustered_events	ECNT=20;HCNT=16;MAX_ED=204;MIN_ED=23;NLOD=8.16;TLOD=14.22	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:86,4:0.058:1:3:.:0|1:54040_T_A:2873,130:53:33	0/0:54,2:0.035:0:2:.:0|1:54040_T_A:1762,59:34:20
chr14_GL000225v1_random	54129	.	T	TGC	.	alt_allele_in_normal;clustered_events	ECNT=20;HCNT=16;MAX_ED=204;MIN_ED=23;NLOD=3.34;TLOD=14.27	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:69,3:0.037:1:2:.:0|1:54040_T_A:2008,93:40:28	0/0:39,2:0.025:0:2:.:0|1:54040_T_A:1122,56:25:13
chr14_GL000225v1_random	54176	.	G	A	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=20;HCNT=19;MAX_ED=204;MIN_ED=23;NLOD=2.42;TLOD=5.49	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:38,2:0.047:0:2:0.00:1237,61:25:13	0/0:23,1:0.042:0:1:0.00:753,31:11:12
chr14_GL000225v1_random	54180	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=20;HCNT=4;MAX_ED=204;MIN_ED=23;NLOD=2.42;TLOD=15.96	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:34,5:0.125:4:1:0.200:0|1:54180_C_T:1081,169:21:13	0/0:22,2:0.083:0:2:1.00:0|1:54180_C_T:671,68:11:11
chr14_GL000225v1_random	54185	.	C	CT	.	alt_allele_in_normal;clustered_events;germline_risk	ECNT=20;HCNT=4;MAX_ED=204;MIN_ED=23;NLOD=1.82;TLOD=16.01	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:33,5:0.128:4:1:.:0|1:54180_C_T:1042,165:20:13	0/0:15,2:0.091:0:2:.:0|1:54180_C_T:487,71:7:8
chr14_GL000225v1_random	54186	.	C	A	.	alt_allele_in_normal;clustered_events;germline_risk	ECNT=20;HCNT=4;MAX_ED=204;MIN_ED=23;NLOD=0.918;TLOD=16.07	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:32,5:0.132:4:1:0.200:0|1:54180_C_T:1023,145:19:13	0/0:15,2:0.105:0:2:1.00:0|1:54180_C_T:492,62:7:8
chr14_GL000225v1_random	54199	.	T	C	.	alt_allele_in_normal;clustered_events;germline_risk;t_lod_fstar	ECNT=20;HCNT=2;MAX_ED=204;MIN_ED=23;NLOD=0.752;TLOD=4.44	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:27,3:0.088:2:1:0.667:857,76:17:10	0/0:14,1:0.067:0:1:0.00:442,30:7:7
chr14_GL000225v1_random	54208	.	C	T	.	clustered_events;homologous_mapping_event;t_lod_fstar	ECNT=20;HCNT=2;MAX_ED=204;MIN_ED=23;NLOD=4.21;TLOD=4.44	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:19,2:0.091:0:2:1.00:617,64:12:7	0/0:13,0:0.00:0:0:.:398,0:7:6
chr14_GL000225v1_random	58129	.	C	A	.	clustered_events;homologous_mapping_event;t_lod_fstar	ECNT=8;HCNT=1;MAX_ED=164;MIN_ED=6;NLOD=5.42;TLOD=5.90	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:24,2:0.074:1:1:0.500:0|1:58129_C_A:827,59:8:16	0/0:17,0:0.00:0:0:.:0|1:58129_C_A:592,0:7:10
chr14_GL000225v1_random	58135	.	G	A	.	clustered_events;homologous_mapping_event;t_lod_fstar	ECNT=8;HCNT=1;MAX_ED=164;MIN_ED=6;NLOD=6.92;TLOD=5.78	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:28,2:0.065:1:1:0.500:0|1:58129_C_A:752,61:10:18	0/0:21,0:0.00:0:0:.:0|1:58129_C_A:576,0:10:11
chr14_GL000225v1_random	58144	.	G	T	.	alt_allele_in_normal;clustered_events	ECNT=8;HCNT=33;MAX_ED=164;MIN_ED=6;NLOD=4.52;TLOD=19.96	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:29,6:0.167:1:5:0.167:957,188:13:16	0/0:27,2:0.063:0:2:0.00:904,57:13:14
chr14_GL000225v1_random	58154	.	C	A	.	clustered_events;homologous_mapping_event;t_lod_fstar	ECNT=8;HCNT=1;MAX_ED=164;MIN_ED=6;NLOD=5.45;TLOD=5.62	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:32,2:0.036:1:1:0.500:0|1:58129_C_A:667,65:8:12	0/0:18,0:0.00:0:0:.:0|1:58129_C_A:471,0:5:9
chr14_GL000225v1_random	58157	.	C	T	.	clustered_events;homologous_mapping_event;t_lod_fstar	ECNT=8;HCNT=15;MAX_ED=164;MIN_ED=6;NLOD=9.33;TLOD=5.57	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:37,2:0.051:1:1:0.500:1259,51:15:22	0/0:32,0:0.00:0:0:.:1073,0:13:19
chr14_GL000225v1_random	58177	.	C	G	.	clustered_events;homologous_mapping_event;t_lod_fstar	ECNT=8;HCNT=1;MAX_ED=164;MIN_ED=6;NLOD=14.45;TLOD=5.43	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:44,2:0.043:1:1:0.500:0|1:58129_C_A:1482,51:21:23	0/0:48,0:0.00:0:0:.:0|1:58129_C_A:1618,0:19:29
chr14_GL000225v1_random	58179	.	C	T	.	alt_allele_in_normal;clustered_events;germline_risk	ECNT=8;HCNT=4;MAX_ED=164;MIN_ED=6;NLOD=1.55;TLOD=8.66	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:42,3:0.064:1:2:0.667:1398,95:22:20	0/0:44,4:0.077:2:2:0.500:1460,132:18:26
chr14_GL000225v1_random	58293	.	G	A	.	alt_allele_in_normal;clustered_events;triallelic_site	ECNT=8;HCNT=1;MAX_ED=164;MIN_ED=6;NLOD=10.16;TLOD=40.89	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:134,19:0.073:5:14:0.263:3729,627:59:60	0/0:122,8:0.030:4:4:0.500:3618,272:51:61
chr14_GL000225v1_random	58321	.	G	A	.	alt_allele_in_normal	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=20.23;TLOD=21.93	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:170,9:0.046:2:7:0.222:5958,294:69:101	0/0:146,7:0.043:5:2:0.714:5088,221:67:79
chr14_GL000225v1_random	58443	.	G	A	.	alt_allele_in_normal	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=39.53;TLOD=14.32	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:258,9:0.035:5:4:0.556:7476,287:130:128	0/0:230,11:0.051:7:4:0.636:6565,307:120:110
chr14_GL000225v1_random	58593	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=3;HCNT=2;MAX_ED=9;MIN_ED=4;NLOD=4.71;TLOD=17.06	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:99,6:0.058:2:4:0.333:0|1:58593_G_A:3161,187:47:52	0/0:82,3:0.056:0:3:0.00:0|1:58593_G_A:2540,96:38:44
chr14_GL000225v1_random	58597	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=3;HCNT=2;MAX_ED=9;MIN_ED=4;NLOD=8.19;TLOD=20.42	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:95,6:0.069:2:4:0.333:0|1:58593_G_A:3014,203:45:50	0/0:77,4:0.045:1:3:0.250:0|1:58593_G_A:2411,132:35:42
chr14_GL000225v1_random	58602	.	G	T	.	alt_allele_in_normal;clustered_events	ECNT=3;HCNT=2;MAX_ED=9;MIN_ED=4;NLOD=6.38;TLOD=23.97	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:91,8:0.082:3:5:0.375:0|1:58593_G_A:3046,270:46:45	0/0:75,4:0.049:1:3:0.250:0|1:58593_G_A:2455,132:38:37
chr14_GL000225v1_random	58707	.	GT	G	.	alt_allele_in_normal;clustered_events	ECNT=3;HCNT=6;MAX_ED=7;MIN_ED=2;NLOD=2.44;TLOD=8.94	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:32,3:0.079:1:2:.:0|1:58707_GT_G:1068,99:16:16	0/0:33,1:0.053:1:0:.:0|1:58707_GT_G:1102,34:15:18
chr14_GL000225v1_random	58709	.	C	G	.	clustered_events;multi_event_alt_allele_in_normal	ECNT=3;HCNT=6;MAX_ED=7;MIN_ED=2;NLOD=5.43;TLOD=8.76	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:32,3:0.043:1:2:.:0|1:58707_GT_G:1057,97:17:15	0/0:32,1:0.016:1:0:.:0|1:58707_GT_G:1011,35:15:16
chr14_GL000225v1_random	58714	.	A	G	.	clustered_events;multi_event_alt_allele_in_normal;t_lod_fstar	ECNT=3;HCNT=6;MAX_ED=7;MIN_ED=2;NLOD=4.23;TLOD=5.59	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:28,2:0.032:0:2:1.00:0|1:58707_GT_G:882,64:15:13	0/0:28,1:0.018:1:0:0.00:0|1:58707_GT_G:876,34:14:14
chr14_GL000225v1_random	58933	.	C	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.47;TLOD=4.93	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:12,2:0.154:0:2:1.00:413,64:6:6	0/0:15,0:0.00:0:0:.:478,0:8:7
chr14_GL000225v1_random	59114	.	G	A	.	alt_allele_in_normal;clustered_events;germline_risk	ECNT=3;HCNT=28;MAX_ED=92;MIN_ED=2;NLOD=0.617;TLOD=17.50	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:16,5:0.238:4:1:0.800:0|1:59114_G_A:498,158:5:11	0/0:15,1:0.056:0:1:0.00:0|1:59114_G_A:456,31:7:8
chr14_GL000225v1_random	59116	.	A	G	.	alt_allele_in_normal;clustered_events;germline_risk	ECNT=3;HCNT=28;MAX_ED=92;MIN_ED=2;NLOD=0.617;TLOD=17.62	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:16,5:0.250:4:1:0.200:0|1:59114_G_A:515,158:5:11	0/0:18,1:0.056:0:1:1.00:0|1:59114_G_A:579,35:7:11
chr14_GL000225v1_random	59206	.	G	C	.	clustered_events;homologous_mapping_event	ECNT=3;HCNT=4;MAX_ED=92;MIN_ED=2;NLOD=3.61;TLOD=7.74	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:17,3:0.150:2:1:0.667:572,85:11:6	0/0:14,0:0.00:0:0:.:490,0:8:6
chr14_GL000225v1_random	59299	.	C	T	.	clustered_events;germline_risk;homologous_mapping_event	ECNT=4;HCNT=10;MAX_ED=92;MIN_ED=25;NLOD=1.81;TLOD=8.28	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:13,3:0.231:2:1:0.333:407,99:4:9	0/0:6,0:0.00:0:0:.:167,0:4:2
chr14_GL000225v1_random	59324	.	G	T	.	clustered_events;homologous_mapping_event	ECNT=4;HCNT=39;MAX_ED=92;MIN_ED=25;NLOD=2.71;TLOD=13.10	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:21,6:0.217:2:4:0.333:695,192:15:6	0/0:9,0:0.00:0:0:.:298,0:7:2
chr14_GL000225v1_random	59369	.	T	G	.	alt_allele_in_normal;clustered_events;germline_risk	ECNT=4;HCNT=23;MAX_ED=92;MIN_ED=25;NLOD=1.44;TLOD=16.17	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:20,7:0.231:5:2:0.714:648,229:16:4	0/0:18,1:0.056:1:0:1.00:582,35:11:7
chr14_GL000225v1_random	59391	.	C	G	.	clustered_events;homologous_mapping_event	ECNT=4;HCNT=12;MAX_ED=92;MIN_ED=25;NLOD=4.82;TLOD=12.01	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:13,4:0.211:2:2:0.500:449,133:10:3	0/0:16,0:0.00:0:0:.:549,0:10:6
chr14_GL000225v1_random	64657	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=2;HCNT=13;MAX_ED=28;MIN_ED=28;NLOD=4.74;TLOD=64.55	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:60,22:0.259:8:14:0.364:1609,638:27:33	0/0:77,6:0.067:4:2:0.667:2093,181:34:43
chr14_GL000225v1_random	64685	.	G	A	.	clustered_events;multi_event_alt_allele_in_normal	ECNT=2;HCNT=7;MAX_ED=28;MIN_ED=28;NLOD=19.90;TLOD=29.66	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:57,13:0.183:5:8:0.385:1655,379:27:30	0/0:77,1:0.013:1:0:1.00:2197,31:34:43
chr14_GL000225v1_random	72292	.	C	T	.	germline_risk	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=9.65	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,3:0.750:1:2:0.667:31,94:1:0	0/0:3,0:0.00:0:0:.:105,0:0:3
chr14_GL000225v1_random	72788	.	T	G	.	alt_allele_in_normal;clustered_events	ECNT=3;HCNT=23;MAX_ED=17;MIN_ED=7;NLOD=21.70;TLOD=11.04	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:85,4:0.048:2:2:0.500:0|1:72788_T_G:2759,136:39:46	0/0:102,2:0.020:2:0:1.00:0|1:72788_T_G:3304,67:48:54
chr14_GL000225v1_random	72795	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=3;HCNT=23;MAX_ED=17;MIN_ED=7;NLOD=22.30;TLOD=11.00	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:88,4:0.047:2:2:0.500:0|1:72788_T_G:2838,132:36:52	0/0:101,2:0.019:2:0:0.00:0|1:72788_T_G:3355,66:47:54
chr14_GL000225v1_random	72805	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=3;HCNT=23;MAX_ED=17;MIN_ED=7;NLOD=20.50;TLOD=10.95	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:81,4:0.046:2:2:0.500:0|1:72788_T_G:2789,122:35:46	0/0:99,2:0.020:2:0:1.00:0|1:72788_T_G:3390,63:47:52
chr14_GL000225v1_random	72924	.	G	T	.	alt_allele_in_normal;clustered_events;germline_risk	ECNT=13;HCNT=2;MAX_ED=212;MIN_ED=4;NLOD=1.01;TLOD=7.85	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:83,3:0.035:1:2:0.333:2810,94:40:43	0/0:111,7:0.059:2:5:0.286:3765,220:56:55
chr14_GL000225v1_random	72928	.	A	G	.	alt_allele_in_normal;clustered_events	ECNT=13;HCNT=1;MAX_ED=212;MIN_ED=4;NLOD=3.27;TLOD=8.76	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:30,3:0.047:2:1:0.333:0|1:72928_A_G:721,99:8:14	0/0:33,5:0.078:3:2:0.400:0|1:72928_A_G:731,160:11:11
chr14_GL000225v1_random	72930	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=13;HCNT=1;MAX_ED=212;MIN_ED=4;NLOD=24.81;TLOD=7.70	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:84,3:0.031:2:1:0.667:0|1:72928_A_G:2842,91:40:44	0/0:105,4:0.042:3:1:0.750:0|1:72928_A_G:3593,120:52:53
chr14_GL000225v1_random	72933	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=13;HCNT=1;MAX_ED=212;MIN_ED=4;NLOD=27.41;TLOD=7.59	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:92,3:0.029:2:1:0.667:0|1:72928_A_G:3106,96:43:49	0/0:107,4:0.034:3:1:0.750:0|1:72928_A_G:3650,125:56:51
chr14_GL000225v1_random	72943	.	G	T	.	alt_allele_in_normal;clustered_events	ECNT=13;HCNT=1;MAX_ED=212;MIN_ED=4;NLOD=28.31;TLOD=7.51	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:105,3:0.027:2:1:0.667:0|1:72928_A_G:3149,97:53:52	0/0:110,4:0.034:3:1:0.750:0|1:72928_A_G:3347,116:64:46
chr14_GL000225v1_random	73098	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=13;HCNT=1;MAX_ED=212;MIN_ED=4;NLOD=35.02;TLOD=6.67	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:219,4:0.014:3:1:0.750:0|1:73098_G_A:6912,135:122:97	0/0:245,13:0.051:9:4:0.692:0|1:73098_G_A:7743,433:127:118
chr14_GL000225v1_random	73101	.	T	A	.	alt_allele_in_normal;clustered_events	ECNT=13;HCNT=1;MAX_ED=212;MIN_ED=4;NLOD=38.33;TLOD=6.61	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:227,4:0.014:3:1:0.750:0|1:73098_G_A:6767,134:128:99	0/0:244,13:0.049:9:4:0.692:0|1:73098_G_A:7227,440:127:117
chr14_GL000225v1_random	73118	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=13;HCNT=1;MAX_ED=212;MIN_ED=4;NLOD=32.62;TLOD=6.74	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:206,4:0.015:3:1:0.750:0|1:73098_G_A:6991,127:114:92	0/0:224,12:0.054:9:3:0.750:0|1:73098_G_A:7604,372:124:100
chr14_GL000225v1_random	73123	.	C	A	.	alt_allele_in_normal;clustered_events	ECNT=13;HCNT=1;MAX_ED=212;MIN_ED=4;NLOD=31.11;TLOD=6.83	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:188,2:0.016:2:0:0.00:0|1:73098_G_A:6536,64:108:80	0/0:221,10:0.046:7:3:0.300:0|1:73098_G_A:7605,318:121:100
chr14_GL000225v1_random	73125	.	C	T	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=13;HCNT=1;MAX_ED=212;MIN_ED=4;NLOD=30.21;TLOD=4.24	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:184,2:0.011:2:0:0.00:0|1:73098_G_A:6245,65:108:76	0/0:220,9:0.047:6:3:0.333:0|1:73098_G_A:7558,285:119:101
chr14_GL000225v1_random	73126	.	C	G	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=13;HCNT=1;MAX_ED=212;MIN_ED=4;NLOD=28.69;TLOD=4.16	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:161,2:6.211e-03:2:0:0.00:0|1:73098_G_A:5452,69:92:69	0/0:186,8:0.024:5:3:0.375:0|1:73098_G_A:6369,259:107:79
chr14_GL000225v1_random	73132	.	C	A	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=13;HCNT=1;MAX_ED=212;MIN_ED=4;NLOD=33.79;TLOD=4.33	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:166,2:0.013:2:0:0.00:0|1:73098_G_A:5516,61:100:66	0/0:201,8:0.041:5:3:0.375:0|1:73098_G_A:6686,244:107:94
chr14_GL000225v1_random	73136	.	G	A	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=13;HCNT=1;MAX_ED=212;MIN_ED=4;NLOD=30.78;TLOD=4.38	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:150,2:0.013:2:0:1.00:0|1:73098_G_A:4909,60:90:60	0/0:189,7:0.043:5:2:0.714:0|1:73098_G_A:6225,209:102:87
chr14_GL000225v1_random	73165	.	T	A	.	alt_allele_in_normal;clustered_events	ECNT=3;HCNT=5;MAX_ED=12;MIN_ED=9;NLOD=17.41;TLOD=23.39	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:102,8:0.070:6:2:0.750:3339,251:62:40	0/0:139,6:0.040:1:5:0.167:4385,196:77:62
chr14_GL000225v1_random	73174	.	C	A	.	clustered_events;multi_event_alt_allele_in_normal;t_lod_fstar	ECNT=3;HCNT=1;MAX_ED=12;MIN_ED=9;NLOD=33.13;TLOD=4.59	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:94,2:0.010:1:1:0.500:0|1:73174_C_A:3185,62:60:34	0/0:122,1:3.984e-03:1:0:0.00:0|1:73174_C_A:4124,29:66:56
chr14_GL000225v1_random	73177	.	G	C	.	clustered_events;multi_event_alt_allele_in_normal;t_lod_fstar	ECNT=3;HCNT=1;MAX_ED=12;MIN_ED=9;NLOD=31.02;TLOD=4.80	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:86,2:0.021:1:1:0.500:0|1:73174_C_A:2893,72:55:31	0/0:111,1:8.403e-03:1:0:1.00:0|1:73174_C_A:3689,36:58:53
chr14_GL000225v1_random	78696	.	G	A	.	alt_allele_in_normal;clustered_events;germline_risk;t_lod_fstar	ECNT=7;HCNT=4;MAX_ED=77;MIN_ED=1;NLOD=1.25;TLOD=6.05	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:21,2:0.087:1:1:0.500:605,65:11:10	0/0:29,2:0.065:2:0:1.00:834,64:14:15
chr14_GL000225v1_random	78697	.	G	A	.	clustered_events;multi_event_alt_allele_in_normal	ECNT=7;HCNT=9;MAX_ED=77;MIN_ED=1;NLOD=4.53;TLOD=13.09	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:19,4:0.095:1:3:0.250:0|1:78697_G_A:661,126:11:8	0/0:28,1:0.017:0:1:0.00:0|1:78697_G_A:948,31:15:13
chr14_GL000225v1_random	78704	.	G	T	.	clustered_events;multi_event_alt_allele_in_normal	ECNT=7;HCNT=9;MAX_ED=77;MIN_ED=1;NLOD=6.04;TLOD=13.01	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:20,4:0.143:1:3:0.250:0|1:78697_G_A:565,125:10:10	0/0:34,1:0.029:0:1:0.00:0|1:78697_G_A:1016,31:18:16
chr14_GL000225v1_random	78728	.	G	A	.	clustered_events;multi_event_alt_allele_in_normal	ECNT=7;HCNT=9;MAX_ED=77;MIN_ED=1;NLOD=8.74;TLOD=12.35	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:36,4:0.100:1:3:0.250:0|1:78697_G_A:1161,137:15:21	0/0:43,1:0.022:0:1:0.00:0|1:78697_G_A:1366,32:22:21
chr14_GL000225v1_random	78737	.	C	T	.	clustered_events;homologous_mapping_event	ECNT=7;HCNT=9;MAX_ED=77;MIN_ED=1;NLOD=14.45;TLOD=8.91	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:35,3:0.077:0:3:1.00:0|1:78697_G_A:1147,98:13:22	0/0:46,0:0.00:0:0:.:0|1:78697_G_A:1489,0:25:21
chr14_GL000225v1_random	78772	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=7;HCNT=2;MAX_ED=77;MIN_ED=1;NLOD=8.17;TLOD=11.50	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:63,4:0.063:1:3:0.750:0|1:78772_C_T:2116,131:28:35	0/0:74,3:0.039:0:3:1.00:0|1:78772_C_T:2445,98:38:36
chr14_GL000225v1_random	78773	.	C	A	.	alt_allele_in_normal;clustered_events	ECNT=7;HCNT=2;MAX_ED=77;MIN_ED=1;NLOD=7.87;TLOD=11.50	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:63,4:0.063:1:3:0.750:0|1:78772_C_T:2107,114:28:35	0/0:74,3:0.040:0:3:1.00:0|1:78772_C_T:2472,96:38:36
chr14_GL000225v1_random	78797	.	G	T	.	alt_allele_in_normal;clustered_events	ECNT=5;HCNT=1;MAX_ED=136;MIN_ED=7;NLOD=13.59;TLOD=11.17	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:76,4:0.052:1:3:0.250:0|1:78797_G_T:2606,128:36:40	0/0:89,4:0.043:1:3:0.250:0|1:78797_G_T:3079,128:49:40
chr14_GL000225v1_random	78804	.	T	C	.	alt_allele_in_normal;clustered_events	ECNT=5;HCNT=1;MAX_ED=136;MIN_ED=7;NLOD=12.69;TLOD=11.10	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:84,4:0.050:1:3:0.250:0|1:78797_G_T:2700,134:39:45	0/0:99,4:0.045:1:3:0.250:0|1:78797_G_T:3159,135:55:44
chr14_GL000225v1_random	78806	.	G	T	.	alt_allele_in_normal;clustered_events	ECNT=5;HCNT=1;MAX_ED=136;MIN_ED=7;NLOD=12.39;TLOD=11.08	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:85,4:0.049:1:3:0.250:0|1:78797_G_T:2924,124:39:46	0/0:99,4:0.045:1:3:0.250:0|1:78797_G_T:3353,125:55:44
chr14_GL000225v1_random	78815	.	A	G	.	alt_allele_in_normal;clustered_events	ECNT=5;HCNT=2;MAX_ED=136;MIN_ED=7;NLOD=13.89;TLOD=11.04	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:97,4:0.048:1:3:0.750:3146,118:43:54	0/0:103,3:0.033:0:3:1.00:3319,92:57:46
chr14_GL000225v1_random	78933	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=5;HCNT=5;MAX_ED=136;MIN_ED=7;NLOD=2.43;TLOD=6.47	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:55,3:0.052:3:0:0.00:1861,98:30:25	0/0:58,1:0.065:0:1:1.00:2014,34:27:31
chr14_GL000225v1_random	78979	.	C	T	.	clustered_events;multi_event_alt_allele_in_normal	ECNT=5;HCNT=3;MAX_ED=166;MIN_ED=3;NLOD=14.75;TLOD=8.68	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:43,5:0.089:3:2:0.400:0|1:78979_C_T:1419,170:20:23	0/0:45,1:0.020:1:0:0.00:0|1:78979_C_T:1508,35:22:23
chr14_GL000225v1_random	78982	.	G	A	.	clustered_events;multi_event_alt_allele_in_normal	ECNT=5;HCNT=3;MAX_ED=166;MIN_ED=3;NLOD=15.05;TLOD=8.68	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:43,5:0.089:3:2:0.600:0|1:78979_C_T:1275,169:20:23	0/0:49,1:0.020:1:0:1.00:0|1:78979_C_T:1506,33:23:26
chr14_GL000225v1_random	78991	.	A	G	.	clustered_events;multi_event_alt_allele_in_normal	ECNT=5;HCNT=3;MAX_ED=166;MIN_ED=3;NLOD=15.65;TLOD=8.80	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:39,5:0.095:3:2:0.400:0|1:78979_C_T:1160,171:17:22	0/0:50,1:0.019:1:0:0.00:0|1:78979_C_T:1602,36:24:26
chr14_GL000225v1_random	78994	.	A	G	.	alt_allele_in_normal;clustered_events	ECNT=5;HCNT=13;MAX_ED=166;MIN_ED=3;NLOD=3.02;TLOD=16.02	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:36,7:0.150:4:3:0.429:1092,229:15:21	0/0:45,7:0.132:3:4:0.571:1338,237:22:23
chr14_GL000225v1_random	79145	.	C	A	.	alt_allele_in_normal;clustered_events;germline_risk	ECNT=5;HCNT=3;MAX_ED=166;MIN_ED=3;NLOD=0.673;TLOD=9.54	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:20,4:0.160:1:3:0.750:694,124:5:15	0/0:25,2:0.077:1:1:0.500:868,62:18:7
chr14_GL000225v1_random	79668	.	C	T	.	alt_allele_in_normal	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=19.09;TLOD=16.89	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:146,14:0.089:7:7:0.500:4434,439:72:74	0/0:154,6:0.043:3:3:0.500:4788,201:84:70
chr14_GL000225v1_random	89611	.	G	A	.	PASS	ECNT=1;HCNT=3;MAX_ED=.;MIN_ED=.;NLOD=2.41;TLOD=6.93	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:7,2:0.222:0:2:0.00:226,64:6:1	0/0:8,0:0.00:0:0:.:265,0:4:4
chr14_GL000225v1_random	89650	.	A	T	.	clustered_events;homologous_mapping_event	ECNT=4;HCNT=2;MAX_ED=14;MIN_ED=5;NLOD=2.71;TLOD=6.58	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:13,2:0.154:1:1:0.500:0|1:89650_A_T:420,67:6:7	0/0:9,0:0.00:0:0:.:0|1:89650_A_T:280,0:3:6
chr14_GL000225v1_random	89655	.	A	G	.	clustered_events;homologous_mapping_event	ECNT=4;HCNT=2;MAX_ED=14;MIN_ED=5;NLOD=3.01;TLOD=6.51	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:13,2:0.143:1:1:0.500:0|1:89650_A_T:414,60:6:7	0/0:10,0:0.00:0:0:.:0|1:89650_A_T:321,0:4:6
chr14_GL000225v1_random	89657	.	G	T	.	clustered_events;homologous_mapping_event	ECNT=4;HCNT=2;MAX_ED=14;MIN_ED=5;NLOD=3.01;TLOD=6.44	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:13,2:0.133:1:1:0.500:0|1:89650_A_T:426,64:6:7	0/0:10,0:0.00:0:0:.:0|1:89650_A_T:333,0:4:6
chr14_GL000225v1_random	89664	.	C	T	.	clustered_events;homologous_mapping_event	ECNT=4;HCNT=2;MAX_ED=14;MIN_ED=5;NLOD=3.01;TLOD=6.51	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:12,2:0.143:1:1:0.500:0|1:89650_A_T:413,62:6:6	0/0:10,0:0.00:0:0:.:0|1:89650_A_T:333,0:4:6
chr14_GL000225v1_random	90120	.	G	T	.	alt_allele_in_normal	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=24.89;TLOD=6.47	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:182,4:0.025:2:2:0.500:6172,127:95:87	0/0:144,5:0.031:2:3:0.400:5003,160:77:67
chr14_GL000225v1_random	90162	.	T	A	.	alt_allele_in_normal;clustered_events	ECNT=4;HCNT=2;MAX_ED=81;MIN_ED=7;NLOD=4.18;TLOD=16.06	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:142,7:0.049:2:5:0.286:0|1:90162_T_A:4564,226:70:72	0/0:113,9:0.080:4:5:0.444:0|1:90162_T_A:3669,288:61:52
chr14_GL000225v1_random	90169	.	G	C	.	alt_allele_in_normal;clustered_events	ECNT=4;HCNT=2;MAX_ED=81;MIN_ED=7;NLOD=7.02;TLOD=9.44	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:130,3:0.029:0:3:0.00:0|1:90162_T_A:4508,106:62:68	0/0:85,6:0.072:2:4:0.333:0|1:90162_T_A:2951,197:42:43
chr14_GL000225v1_random	90176	.	A	T	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=4;HCNT=2;MAX_ED=81;MIN_ED=7;NLOD=19.54;TLOD=4.58	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:114,2:0.017:0:2:1.00:0|1:90162_T_A:3388,64:58:56	0/0:85,1:0.037:0:1:1.00:0|1:90162_T_A:2394,30:43:42
chr14_GL000225v1_random	90243	.	T	C	.	clustered_events;multi_event_alt_allele_in_normal;t_lod_fstar	ECNT=4;HCNT=2;MAX_ED=81;MIN_ED=7;NLOD=17.47;TLOD=4.98	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:74,2:0.026:1:1:0.500:2460,58:41:33	0/0:74,1:0.014:1:0:1.00:2365,34:37:37
chr14_GL000225v1_random	90387	.	C	A	.	alt_allele_in_normal;clustered_events	ECNT=7;HCNT=2;MAX_ED=73;MIN_ED=1;NLOD=13.59;TLOD=7.65	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:79,3:0.018:1:2:0.667:0|1:90387_C_A:2429,101:35:44	0/0:86,4:0.023:0:4:1.00:0|1:90387_C_A:2600,135:35:51
chr14_GL000225v1_random	90388	.	G	A	.	alt_allele_in_normal;clustered_events;germline_risk	ECNT=7;HCNT=6;MAX_ED=73;MIN_ED=1;NLOD=1.61;TLOD=13.71	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:107,5:0.046:2:3:0.400:3459,169:54:53	0/0:108,7:0.063:5:2:0.714:3522,224:43:65
chr14_GL000225v1_random	90404	.	C	A	.	alt_allele_in_normal;clustered_events	ECNT=7;HCNT=2;MAX_ED=73;MIN_ED=1;NLOD=16.60;TLOD=10.64	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:99,5:0.038:2:3:0.600:0|1:90387_C_A:3454,167:48:51	0/0:95,5:0.040:0:5:1.00:0|1:90387_C_A:3326,164:48:47
chr14_GL000225v1_random	90435	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=7;HCNT=2;MAX_ED=73;MIN_ED=1;NLOD=8.17;TLOD=11.15	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:71,4:0.051:2:2:0.500:0|1:90387_C_A:2034,131:35:36	0/0:67,4:0.055:1:3:0.750:0|1:90387_C_A:1766,127:39:28
chr14_GL000225v1_random	90441	.	G	C	.	alt_allele_in_normal;clustered_events	ECNT=7;HCNT=2;MAX_ED=73;MIN_ED=1;NLOD=10.27;TLOD=8.12	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:65,3:0.043:2:1:0.667:0|1:90387_C_A:2188,103:33:32	0/0:59,3:0.046:1:2:0.333:0|1:90387_C_A:1948,105:35:24
chr14_GL000225v1_random	90454	.	T	C	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=7;HCNT=2;MAX_ED=73;MIN_ED=1;NLOD=3.96;TLOD=5.18	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:59,2:0.033:1:1:0.500:0|1:90387_C_A:1941,73:27:32	0/0:54,4:0.068:1:3:0.250:0|1:90387_C_A:1684,141:32:22
chr14_GL000225v1_random	90460	.	C	T	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=7;HCNT=2;MAX_ED=73;MIN_ED=1;NLOD=3.36;TLOD=5.16	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:58,2:0.032:1:1:0.500:0|1:90387_C_A:1619,62:27:31	0/0:52,3:0.054:1:2:0.667:0|1:90387_C_A:1379,94:30:22
chr14_GL000225v1_random	104302	.	T	G	.	t_lod_fstar	ECNT=1;HCNT=45;MAX_ED=.;MIN_ED=.;NLOD=2.41;TLOD=4.87	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:7,2:0.118:1:1:0.500:233,64:3:4	0/0:9,0:0.00:0:0:.:297,0:6:3
chr14_GL000225v1_random	105268	.	G	T	.	germline_risk	ECNT=1;HCNT=49;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=7.80	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,2:0.500:2:0:1.00:63,60:1:1	0/0:4,0:0.00:0:0:.:126,0:2:2
chr14_GL000225v1_random	114848	.	T	C	.	alt_allele_in_normal;clustered_events	ECNT=8;HCNT=6;MAX_ED=58;MIN_ED=10;NLOD=2.47;TLOD=8.31	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:71,1:0.049:0:1:0.00:2329,30:41:30	0/0:77,8:0.103:5:3:0.625:2510,224:40:37
chr14_GL000225v1_random	114858	.	T	C	.	alt_allele_in_normal;clustered_events	ECNT=8;HCNT=12;MAX_ED=58;MIN_ED=10;NLOD=6.67;TLOD=11.59	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:68,4:0.066:2:2:0.500:0|1:114858_T_C:2126,110:40:28	0/0:79,3:0.038:1:2:0.333:0|1:114858_T_C:2441,99:43:36
chr14_GL000225v1_random	114868	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=8;HCNT=12;MAX_ED=58;MIN_ED=10;NLOD=5.16;TLOD=11.59	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:64,4:0.066:2:2:0.500:0|1:114858_T_C:1903,128:35:29	0/0:73,3:0.043:1:2:0.667:0|1:114858_T_C:2172,95:38:35
chr14_GL000225v1_random	114871	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=8;HCNT=12;MAX_ED=58;MIN_ED=10;NLOD=5.46;TLOD=11.62	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:60,4:0.067:2:2:0.500:0|1:114858_T_C:2023,130:33:27	0/0:72,3:0.043:1:2:0.333:0|1:114858_T_C:2477,100:39:33
chr14_GL000225v1_random	114876	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=8;HCNT=12;MAX_ED=58;MIN_ED=10;NLOD=5.16;TLOD=11.84	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:56,4:0.075:2:2:0.500:0|1:114858_T_C:1880,133:32:24	0/0:70,3:0.044:1:2:0.333:0|1:114858_T_C:2373,96:37:33
chr14_GL000225v1_random	114894	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=8;HCNT=12;MAX_ED=58;MIN_ED=10;NLOD=3.96;TLOD=12.02	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:45,4:0.083:2:2:0.500:0|1:114858_T_C:1550,131:28:17	0/0:65,3:0.047:1:2:0.667:0|1:114858_T_C:2243,96:37:28
chr14_GL000225v1_random	114902	.	G	T	.	alt_allele_in_normal;clustered_events	ECNT=8;HCNT=12;MAX_ED=58;MIN_ED=10;NLOD=3.66;TLOD=8.87	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:39,3:0.075:1:2:0.333:0|1:114858_T_C:1306,94:24:15	0/0:56,1:0.048:1:0:1.00:0|1:114858_T_C:1847,31:32:24
chr14_GL000225v1_random	114906	.	C	T	.	clustered_events;multi_event_alt_allele_in_normal	ECNT=8;HCNT=12;MAX_ED=58;MIN_ED=10;NLOD=9.95;TLOD=8.81	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:35,3:0.071:1:2:0.667:0|1:114858_T_C:1048,94:20:15	0/0:53,1:0.019:1:0:0.00:0|1:114858_T_C:1591,31:30:23
chr14_GL000225v1_random	135773	.	C	T	.	clustered_events;germline_risk;multi_event_alt_allele_in_normal	ECNT=4;HCNT=9;MAX_ED=16;MIN_ED=3;NLOD=2.12;TLOD=9.60	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:18,3:0.081:1:2:0.667:537,98:8:10	0/0:21,1:0.023:1:0:0.00:675,34:9:12
chr14_GL000225v1_random	135776	.	C	A	.	alt_allele_in_normal;clustered_events	ECNT=4;HCNT=6;MAX_ED=16;MIN_ED=3;NLOD=2.72;TLOD=9.69	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:18,3:0.136:1:2:0.667:0|1:135776_C_A:541,97:8:10	0/0:21,1:0.042:1:0:0.00:0|1:135776_C_A:683,33:10:11
chr14_GL000225v1_random	135778	.	C	G	.	alt_allele_in_normal;clustered_events;germline_risk	ECNT=4;HCNT=6;MAX_ED=16;MIN_ED=3;NLOD=2.12;TLOD=9.57	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:20,3:0.125:1:2:0.667:0|1:135776_C_A:621,84:9:11	0/0:22,1:0.045:1:0:0.00:0|1:135776_C_A:718,28:10:12
chr14_GL000225v1_random	135789	.	C	G	.	alt_allele_in_normal;clustered_events	ECNT=4;HCNT=6;MAX_ED=16;MIN_ED=3;NLOD=2.72;TLOD=7.84	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:25,3:0.107:1:2:0.667:780,84:9:16	0/0:24,1:0.042:1:0:0.00:773,28:12:12
chr14_GL000225v1_random	136134	.	T	C	.	germline_risk	ECNT=1;HCNT=23;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=7.80	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,2:0.500:1:1:0.500:64,64:2:0	0/0:3,0:0.00:0:0:.:94,0:1:2
chr14_GL000225v1_random	136323	.	G	C	.	clustered_events;germline_risk;homologous_mapping_event	ECNT=9;HCNT=6;MAX_ED=28;MIN_ED=1;NLOD=0.602;TLOD=7.80	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:2,2:0.500:1:1:0.500:0|1:136323_G_C:69,62:1:1	0/0:2,0:0.00:0:0:.:0|1:136323_G_C:70,0:1:1
chr14_GL000225v1_random	136324	.	C	A	.	clustered_events;germline_risk;homologous_mapping_event	ECNT=9;HCNT=6;MAX_ED=28;MIN_ED=1;NLOD=0.602;TLOD=7.80	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:2,2:0.500:1:1:0.500:0|1:136323_G_C:56,57:1:1	0/0:2,0:0.00:0:0:.:0|1:136323_G_C:61,0:1:1
chr14_GL000225v1_random	136325	.	G	A	.	clustered_events;germline_risk;homologous_mapping_event	ECNT=9;HCNT=6;MAX_ED=28;MIN_ED=1;NLOD=0.602;TLOD=7.80	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:2,2:0.500:1:1:0.500:0|1:136323_G_C:68,58:1:1	0/0:2,0:0.00:0:0:.:0|1:136323_G_C:65,0:1:1
chr14_GL000225v1_random	136333	.	T	C	.	clustered_events;germline_risk;homologous_mapping_event	ECNT=9;HCNT=12;MAX_ED=28;MIN_ED=1;NLOD=0.903;TLOD=7.80	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:2,2:0.500:1:1:0.500:0|1:136333_T_C:62,56:1:1	0/0:3,0:0.00:0:0:.:0|1:136333_T_C:97,0:2:1
chr14_GL000225v1_random	136335	.	G	A	.	clustered_events;germline_risk;homologous_mapping_event	ECNT=9;HCNT=6;MAX_ED=28;MIN_ED=1;NLOD=0.903;TLOD=7.80	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:1,2:0.500:1:1:0.500:0|1:136323_G_C:31,63:1:0	0/0:3,0:0.00:0:0:.:0|1:136323_G_C:100,0:2:1
chr14_GL000225v1_random	136337	.	G	T	.	clustered_events;germline_risk;homologous_mapping_event	ECNT=9;HCNT=6;MAX_ED=28;MIN_ED=1;NLOD=0.903;TLOD=8.17	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:0,2:0.667:1:1:0.500:0|1:136323_G_C:0,66:0:0	0/0:3,0:0.00:0:0:.:0|1:136323_G_C:103,0:2:1
chr14_GL000225v1_random	136340	.	A	G	.	clustered_events;germline_risk;homologous_mapping_event	ECNT=9;HCNT=12;MAX_ED=28;MIN_ED=1;NLOD=0.602;TLOD=9.00	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:0,2:1.00:1:1:0.500:0|1:136333_T_C:0,66:0:0	0/0:2,0:0.00:0:0:.:0|1:136333_T_C:60,0:2:0
chr14_GL000225v1_random	136342	.	T	C	.	clustered_events;germline_risk;homologous_mapping_event	ECNT=9;HCNT=6;MAX_ED=28;MIN_ED=1;NLOD=0.903;TLOD=9.00	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:0,2:1.00:1:1:0.500:0|1:136323_G_C:0,48:0:0	0/0:2,0:0.00:0:0:.:0|1:136323_G_C:63,0:2:0
chr14_GL000225v1_random	136351	.	G	A	.	clustered_events;germline_risk;homologous_mapping_event	ECNT=9;HCNT=6;MAX_ED=28;MIN_ED=1;NLOD=0.602;TLOD=9.00	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:0,2:1.00:1:1:0.500:0|1:136323_G_C:0,64:0:0	0/0:2,0:0.00:0:0:.:0|1:136323_G_C:66,0:1:1
chr14_GL000225v1_random	136856	.	A	G	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=6;HCNT=6;MAX_ED=57;MIN_ED=24;NLOD=8.17;TLOD=5.03	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:69,2:0.028:1:1:0.500:0|1:136856_A_G:2214,60:46:23	0/0:74,5:0.064:5:0:0.00:0|1:136856_A_G:2383,149:43:31
chr14_GL000225v1_random	136880	.	A	T	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=6;HCNT=6;MAX_ED=57;MIN_ED=24;NLOD=3.36;TLOD=5.14	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:64,2:0.031:1:1:0.500:0|1:136856_A_G:2065,62:39:25	0/0:57,4:0.082:4:0:0.00:0|1:136856_A_G:1818,129:30:27
chr14_GL000225v1_random	136897	.	G	A	.	clustered_events;homologous_mapping_event;t_lod_fstar	ECNT=6;HCNT=4;MAX_ED=57;MIN_ED=24;NLOD=14.15;TLOD=5.19	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:61,1:0.033:1:0:1.00:0|1:136897_G_A:1897,32:36:25	0/0:53,0:0.00:0:0:.:0|1:136897_G_A:1685,0:32:21
chr14_GL000225v1_random	136904	.	C	T	.	clustered_events;multi_event_alt_allele_in_normal	ECNT=6;HCNT=4;MAX_ED=57;MIN_ED=24;NLOD=9.95;TLOD=8.35	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:60,3:0.051:1:2:0.667:0|1:136897_G_A:1828,96:35:25	0/0:54,1:0.019:1:0:0.00:0|1:136897_G_A:1647,32:32:22
chr14_GL000225v1_random	136910	.	C	A	.	clustered_events;multi_event_alt_allele_in_normal	ECNT=6;HCNT=4;MAX_ED=57;MIN_ED=24;NLOD=10.25;TLOD=8.42	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:59,3:0.054:1:2:0.667:0|1:136897_G_A:2045,93:35:24	0/0:57,1:0.019:1:0:0.00:0|1:136897_G_A:1952,31:34:23
chr14_GL000225v1_random	136913	.	G	T	.	clustered_events;multi_event_alt_allele_in_normal	ECNT=6;HCNT=4;MAX_ED=57;MIN_ED=24;NLOD=11.15;TLOD=8.42	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:58,3:0.054:1:2:0.333:0|1:136897_G_A:1968,86:35:23	0/0:57,1:0.018:1:0:1.00:0|1:136897_G_A:1969,35:34:23
chr14_GL000225v1_random	137014	.	T	C	.	clustered_events;homologous_mapping_event;t_lod_fstar	ECNT=7;HCNT=40;MAX_ED=38;MIN_ED=1;NLOD=10.54;TLOD=5.98	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:19,2:0.050:2:0:1.00:585,74:10:9	0/0:35,0:0.00:0:0:.:1088,0:21:14
chr14_GL000225v1_random	137015	.	G	A	.	clustered_events;homologous_mapping_event;t_lod_fstar	ECNT=7;HCNT=28;MAX_ED=38;MIN_ED=1;NLOD=11.44;TLOD=6.05	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:21,2:0.087:2:0:1.00:697,66:11:10	0/0:37,0:0.00:0:0:.:1237,0:22:15
chr14_GL000225v1_random	137021	.	G	A	.	clustered_events;homologous_mapping_event;t_lod_fstar	ECNT=7;HCNT=18;MAX_ED=38;MIN_ED=1;NLOD=11.44;TLOD=6.13	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:15,2:0.095:2:0:1.00:0|1:137021_G_A:488,66:9:6	0/0:37,0:0.00:0:0:.:0|1:137021_G_A:1226,0:22:15
chr14_GL000225v1_random	137032	.	T	A	.	clustered_events;homologous_mapping_event	ECNT=7;HCNT=18;MAX_ED=38;MIN_ED=1;NLOD=10.54;TLOD=6.65	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:8,2:0.167:2:0:1.00:0|1:137021_G_A:259,60:3:5	0/0:35,0:0.00:0:0:.:0|1:137021_G_A:1125,0:21:14
chr14_GL000225v1_random	137048	.	T	C	.	alt_allele_in_normal;clustered_events	ECNT=7;HCNT=5;MAX_ED=38;MIN_ED=1;NLOD=3.63;TLOD=7.18	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:5,2:0.286:1:1:0.500:0|1:137048_T_C:160,74:1:4	0/0:26,1:0.037:0:1:0.00:0|1:137048_T_C:821,36:14:12
chr14_GL000225v1_random	137049	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=7;HCNT=5;MAX_ED=38;MIN_ED=1;NLOD=3.63;TLOD=7.18	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:5,2:0.286:1:1:0.500:0|1:137048_T_C:170,64:1:4	0/0:26,1:0.037:0:1:0.00:0|1:137048_T_C:864,32:14:12
chr14_GL000225v1_random	137052	.	T	C	.	alt_allele_in_normal;clustered_events	ECNT=7;HCNT=5;MAX_ED=38;MIN_ED=1;NLOD=3.63;TLOD=7.18	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:5,2:0.286:1:1:0.500:0|1:137048_T_C:161,57:1:4	0/0:25,1:0.037:0:1:0.00:0|1:137048_T_C:799,30:13:12
chr14_GL000225v1_random	148195	.	C	T	.	alt_allele_in_normal	ECNT=1;HCNT=9;MAX_ED=.;MIN_ED=.;NLOD=3.46;TLOD=23.75	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:102,16:0.126:13:3:0.188:3478,514:49:53	0/0:122,11:0.075:7:4:0.364:4205,357:46:76
chr14_GL000194v1_random	1768	.	G	A	.	germline_risk;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=6.12	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,2:0.667:1:1:0.500:38,62:1:0	0/0:4,0:0.00:0:0:.:139,0:3:1
chr14_GL000194v1_random	10703	.	G	T	.	PASS	ECNT=2;HCNT=1;MAX_ED=1;MIN_ED=1;NLOD=4.21;TLOD=6.83	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:8,2:0.200:1:1:0.500:0|1:10703_G_T:282,66:6:2	0/0:16,0:0.00:0:0:.:0|1:10703_G_T:539,0:3:13
chr14_GL000194v1_random	10704	.	C	T	.	PASS	ECNT=2;HCNT=1;MAX_ED=1;MIN_ED=1;NLOD=4.21;TLOD=6.83	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:8,2:0.200:1:1:0.500:0|1:10703_G_T:275,67:6:2	0/0:16,0:0.00:0:0:.:0|1:10703_G_T:528,0:3:13
chr14_GL000194v1_random	10948	.	T	G	.	alt_allele_in_normal;t_lod_fstar	ECNT=1;HCNT=3;MAX_ED=.;MIN_ED=.;NLOD=2.98;TLOD=6.04	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:40,4:0.093:3:1:0.750:1269,134:17:23	0/0:40,7:0.171:5:2:0.714:1258,245:19:21
chr14_GL000194v1_random	11347	.	A	G	.	t_lod_fstar	ECNT=2;HCNT=3;MAX_ED=1;MIN_ED=1;NLOD=3.61;TLOD=6.27	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:18,2:0.111:1:1:0.500:0|1:11347_A_G:593,65:11:7	0/0:13,0:0.00:0:0:.:0|1:11347_A_G:438,0:9:4
chr14_GL000194v1_random	11348	.	T	C	.	t_lod_fstar	ECNT=2;HCNT=3;MAX_ED=1;MIN_ED=1;NLOD=3.61;TLOD=6.27	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:18,2:0.111:1:1:0.500:0|1:11347_A_G:602,63:11:7	0/0:14,0:0.00:0:0:.:0|1:11347_A_G:481,0:9:5
chr14_KI270723v1_random	34797	.	A	C	.	alt_allele_in_normal	ECNT=1;HCNT=3;MAX_ED=.;MIN_ED=.;NLOD=13.56;TLOD=12.36	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:163,6:0.039:4:2:0.333:5352,208:71:92	0/0:105,7:0.065:5:2:0.286:3441,247:56:49
chr14_KI270723v1_random	35207	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=24;HCNT=5;MAX_ED=123;MIN_ED=1;NLOD=3.64;TLOD=8.94	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:36,4:0.079:3:1:0.250:0|1:35207_C_T:1043,128:20:16	0/0:38,4:0.089:1:3:0.750:0|1:35207_C_T:1124,132:19:19
chr14_KI270723v1_random	35208	.	G	C	.	alt_allele_in_normal;clustered_events	ECNT=24;HCNT=5;MAX_ED=123;MIN_ED=1;NLOD=3.94;TLOD=8.94	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:36,4:0.079:3:1:0.750:0|1:35207_C_T:1170,134:20:16	0/0:40,4:0.087:1:3:0.250:0|1:35207_C_T:1294,139:19:21
chr14_KI270723v1_random	35218	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=24;HCNT=5;MAX_ED=123;MIN_ED=1;NLOD=2.74;TLOD=12.40	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:36,5:0.103:4:1:0.800:0|1:35207_C_T:1205,156:20:16	0/0:36,4:0.095:1:3:0.250:0|1:35207_C_T:1179,114:17:19
chr14_KI270723v1_random	35249	.	C	T	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=24;HCNT=2;MAX_ED=123;MIN_ED=1;NLOD=4.24;TLOD=5.70	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:32,2:0.059:2:0:0.00:0|1:35249_C_T:1006,64:21:11	0/0:45,3:0.063:3:0:0.00:0|1:35249_C_T:1375,94:27:18
chr14_KI270723v1_random	35256	.	TGC	T	.	alt_allele_in_normal;clustered_events;str_contraction;t_lod_fstar	ECNT=24;HCNT=2;MAX_ED=123;MIN_ED=1;NLOD=12.05;RPA=3,2;RU=GC;STR;TLOD=5.57	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:37,2:0.051:2:0:.:0|1:35256_TGC_T:1182,64:24:13	0/0:51,2:0.017:0:2:.:0|1:35256_TGC_T:1615,64:32:19
chr14_KI270723v1_random	35258	.	C	T	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=24;HCNT=2;MAX_ED=123;MIN_ED=1;NLOD=7.25;TLOD=5.57	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:35,2:0.051:2:0:0.00:0|1:35249_C_T:1087,67:22:13	0/0:51,3:0.052:3:0:0.00:0|1:35249_C_T:1575,89:29:22
chr14_KI270723v1_random	35259	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=24;HCNT=9;MAX_ED=123;MIN_ED=1;NLOD=3.55;TLOD=8.74	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:36,3:0.068:2:1:0.667:1108,91:24:12	0/0:52,4:0.067:2:2:0.500:1570,127:31:21
chr14_KI270723v1_random	35260	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=24;HCNT=8;MAX_ED=123;MIN_ED=1;NLOD=4.20;TLOD=12.82	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:33,5:0.106:4:1:0.200:1019,156:21:12	0/0:53,5:0.085:3:2:0.400:1610,147:30:23
chr14_KI270723v1_random	35263	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=24;HCNT=2;MAX_ED=123;MIN_ED=1;NLOD=13.26;TLOD=15.44	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:42,4:0.100:3:1:0.250:0|1:35256_TGC_T:1401,125:23:19	0/0:61,2:0.016:0:2:1.00:0|1:35256_TGC_T:2031,69:36:25
chr14_KI270723v1_random	35268	.	G	C	.	alt_allele_in_normal;clustered_events	ECNT=24;HCNT=8;MAX_ED=123;MIN_ED=1;NLOD=2.85;TLOD=11.33	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:44,3:0.078:3:0:1.00:0|1:35268_G_C:1463,97:22:22	0/0:58,7:0.106:5:2:0.714:0|1:35268_G_C:1986,205:32:26
chr14_KI270723v1_random	35272	.	T	G	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=24;HCNT=2;MAX_ED=123;MIN_ED=1;NLOD=10.80;TLOD=5.29	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:51,2:0.037:2:0:1.00:0|1:35249_C_T:1656,66:28:23	0/0:65,3:0.043:3:0:1.00:0|1:35249_C_T:2096,100:35:30
chr14_KI270723v1_random	35277	.	C	A	.	alt_allele_in_normal;clustered_events	ECNT=24;HCNT=2;MAX_ED=123;MIN_ED=1;NLOD=16.57;TLOD=18.77	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:47,6:0.109:3:3:0.500:0|1:35256_TGC_T:1615,200:24:23	0/0:72,2:0.014:0:2:1.00:0|1:35256_TGC_T:2430,72:39:33
chr14_KI270723v1_random	35279	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=24;HCNT=2;MAX_ED=123;MIN_ED=1;NLOD=16.27;TLOD=18.82	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:46,6:0.111:3:3:0.500:0|1:35256_TGC_T:1567,201:24:22	0/0:73,2:0.014:0:2:0.00:0|1:35256_TGC_T:2476,68:39:34
chr14_KI270723v1_random	35286	.	T	G	.	alt_allele_in_normal;clustered_events	ECNT=24;HCNT=8;MAX_ED=123;MIN_ED=1;NLOD=3.42;TLOD=8.35	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:54,3:0.051:3:0:1.00:0|1:35268_G_C:1809,105:27:27	0/0:72,5:0.068:2:3:0.400:0|1:35268_G_C:2381,175:37:35
chr14_KI270723v1_random	35289	.	A	G	.	alt_allele_in_normal;clustered_events;t_lod_fstar;triallelic_site	ECNT=24;HCNT=3;MAX_ED=123;MIN_ED=1;NLOD=10.80;TLOD=5.09	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:56,2:0.018:2:0:0.00:1781,67:27:29	0/0:71,3:0.022:3:0:0.00:2264,103:36:35
chr14_KI270723v1_random	35291	.	G	T	.	alt_allele_in_normal;clustered_events	ECNT=24;HCNT=4;MAX_ED=123;MIN_ED=1;NLOD=7.21;TLOD=25.84	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:55,8:0.136:5:3:0.625:1925,249:28:27	0/0:75,5:0.055:3:2:0.600:2673,156:38:37
chr14_KI270723v1_random	35298	.	G	T	.	clustered_events;homologous_mapping_event;t_lod_fstar;triallelic_site	ECNT=24;HCNT=2;MAX_ED=123;MIN_ED=1;NLOD=20.17;TLOD=5.06	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:60,2:0.018:2:0:1.00:0|1:35298_G_T:2041,62:32:28	0/0:75,0:0.00:0:0:.:0|1:35298_G_T:2568,0:38:37
chr14_KI270723v1_random	35299	.	G	C	.	alt_allele_in_normal;clustered_events	ECNT=24;HCNT=3;MAX_ED=123;MIN_ED=1;NLOD=3.37;TLOD=11.24	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:63,4:0.033:2:2:0.500:2147,142:35:28	0/0:76,4:0.028:1:3:0.250:2659,148:37:39
chr14_KI270723v1_random	35308	.	C	T	.	clustered_events;homologous_mapping_event;t_lod_fstar	ECNT=24;HCNT=4;MAX_ED=123;MIN_ED=1;NLOD=22.27;TLOD=4.62	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:66,2:0.032:1:1:0.500:2191,63:35:31	0/0:86,0:0.00:0:0:.:2909,0:40:46
chr14_KI270723v1_random	35313	.	C	G	.	clustered_events;homologous_mapping_event;t_lod_fstar	ECNT=24;HCNT=2;MAX_ED=123;MIN_ED=1;NLOD=23.48;TLOD=5.10	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:71,2:0.030:2:0:0.00:0|1:35298_G_T:2383,69:38:33	0/0:85,0:0.00:0:0:.:0|1:35298_G_T:2933,0:39:46
chr14_KI270723v1_random	35315	.	C	T	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=24;HCNT=3;MAX_ED=123;MIN_ED=1;NLOD=3.97;TLOD=4.95	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:69,2:0.015:2:0:0.00:2173,65:36:33	0/0:78,5:0.034:2:3:0.600:2465,164:36:42
chr14_KI270723v1_random	35328	.	A	G	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=24;HCNT=2;MAX_ED=123;MIN_ED=1;NLOD=3.09;TLOD=5.04	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:73,2:0.028:2:0:0.00:2388,69:41:32	0/0:89,6:0.055:2:4:0.667:2883,209:40:49
chr14_KI270723v1_random	35329	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=24;HCNT=5;MAX_ED=123;MIN_ED=1;NLOD=6.98;TLOD=8.10	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:69,4:0.042:4:0:1.00:0|1:35329_G_A:2361,131:38:31	0/0:89,5:0.057:2:3:0.400:0|1:35329_G_A:3057,162:39:50
chr14_KI270723v1_random	35330	.	C	A	.	alt_allele_in_normal;clustered_events	ECNT=24;HCNT=5;MAX_ED=123;MIN_ED=1;NLOD=6.98;TLOD=8.14	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:69,4:0.043:4:0:0.00:0|1:35329_G_A:2327,125:38:31	0/0:89,5:0.057:2:3:0.600:0|1:35329_G_A:3040,154:39:50
chr14_KI270723v1_random	35334	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=7;HCNT=1;MAX_ED=65;MIN_ED=7;NLOD=18.68;TLOD=11.81	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:51,5:0.074:0:5:0.00:1750,156:24:27	0/0:86,3:0.036:2:1:0.667:2963,93:42:44
chr14_KI270723v1_random	35341	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=7;HCNT=4;MAX_ED=65;MIN_ED=7;NLOD=13.88;TLOD=7.03	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:49,2:0.059:0:2:1.00:1476,64:22:27	0/0:77,2:0.024:2:0:0.00:2434,62:36:41
chr14_KI270723v1_random	35367	.	C	A	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=7;HCNT=3;MAX_ED=65;MIN_ED=7;NLOD=6.94;TLOD=6.05	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:19,2:0.087:1:1:0.500:0|1:35367_C_A:638,66:9:10	0/0:41,2:0.024:2:0:0.00:0|1:35367_C_A:1394,65:18:23
chr14_KI270723v1_random	35368	.	C	T	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=7;HCNT=3;MAX_ED=65;MIN_ED=7;NLOD=6.94;TLOD=6.01	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:19,2:0.083:1:1:0.500:0|1:35367_C_A:580,62:9:10	0/0:41,2:0.024:2:0:0.00:0|1:35367_C_A:1299,64:18:23
chr14_KI270723v1_random	35373	.	T	G	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=7;HCNT=3;MAX_ED=65;MIN_ED=7;NLOD=5.13;TLOD=6.17	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:15,2:0.063:1:1:0.500:0|1:35367_C_A:467,70:5:10	0/0:30,2:0.016:2:0:1.00:0|1:35367_C_A:948,70:12:18
chr14_KI270723v1_random	35396	.	C	T	.	alt_allele_in_normal;clustered_events;germline_risk;t_lod_fstar	ECNT=7;HCNT=3;MAX_ED=65;MIN_ED=7;NLOD=0.617;TLOD=6.25	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:12,2:0.069:1:1:.:0|1:35367_C_A:379,66:2:9	0/0:16,2:0.029:2:0:.:0|1:35367_C_A:547,67:8:8
chr14_KI270723v1_random	35399	.	G	A	.	alt_allele_in_normal;clustered_events;germline_risk	ECNT=7;HCNT=20;MAX_ED=65;MIN_ED=7;NLOD=1.14;TLOD=8.17	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:11,3:0.214:0:3:0.00:374,101:3:8	0/0:19,1:0.056:0:1:0.00:638,34:11:8
chr14_KI270723v1_random	35771	.	C	T	.	clustered_events;homologous_mapping_event	ECNT=8;HCNT=20;MAX_ED=157;MIN_ED=1;NLOD=4.82;TLOD=6.74	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:9,2:0.182:2:0:0.00:0|1:35771_C_T:303,64:5:4	0/0:17,0:0.00:0:0:.:0|1:35771_C_T:562,0:9:8
chr14_KI270723v1_random	35772	.	A	G	.	clustered_events;homologous_mapping_event	ECNT=8;HCNT=20;MAX_ED=157;MIN_ED=1;NLOD=4.82;TLOD=6.74	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:9,2:0.182:2:0:0.00:0|1:35771_C_T:285,70:5:4	0/0:17,0:0.00:0:0:.:0|1:35771_C_T:538,0:9:8
chr14_KI270723v1_random	35873	.	G	T	.	alt_allele_in_normal;clustered_events;germline_risk;t_lod_fstar	ECNT=8;HCNT=4;MAX_ED=157;MIN_ED=1;NLOD=2.17;TLOD=5.07	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:71,3:0.029:0:3:0.00:2444,93:40:31	0/0:74,5:0.053:4:1:0.800:2514,157:41:33
chr14_KI270723v1_random	35900	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=8;HCNT=5;MAX_ED=157;MIN_ED=1;NLOD=7.87;TLOD=11.62	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:61,8:0.082:7:1:0.125:0|1:35900_C_T:1887,254:31:30	0/0:56,2:0.032:2:0:0.00:0|1:35900_C_T:1728,66:33:23
chr14_KI270723v1_random	35914	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=8;HCNT=5;MAX_ED=157;MIN_ED=1;NLOD=4.85;TLOD=11.73	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:60,7:0.088:7:0:1.00:0|1:35900_C_T:2010,229:27:33	0/0:56,2:0.039:2:0:1.00:0|1:35900_C_T:1872,67:32:24
chr14_KI270723v1_random	35916	.	G	C	.	alt_allele_in_normal;clustered_events	ECNT=8;HCNT=5;MAX_ED=157;MIN_ED=1;NLOD=5.15;TLOD=13.89	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:59,6:0.085:6:0:1.00:0|1:35900_C_T:2022,201:27:32	0/0:54,2:0.038:2:0:1.00:0|1:35900_C_T:1855,69:32:22
chr14_KI270723v1_random	35919	.	C	G	.	alt_allele_in_normal;clustered_events	ECNT=8;HCNT=5;MAX_ED=157;MIN_ED=1;NLOD=4.24;TLOD=11.71	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:61,6:0.070:6:0:0.00:0|1:35900_C_T:2127,207:29:32	0/0:51,2:0.041:2:0:0.00:0|1:35900_C_T:1747,69:30:21
chr14_KI270723v1_random	35928	.	G	GAGCTTTAGGATGCGGGGT	.	clustered_events;multi_event_alt_allele_in_normal	ECNT=8;HCNT=5;MAX_ED=157;MIN_ED=1;NLOD=6.64;TLOD=8.57	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:50,3:0.060:3:0:.:0|1:35900_C_T:1719,106:23:27	0/0:44,1:0.024:1:0:.:0|1:35900_C_T:1532,36:29:15
chr14_KI270724v1_random	1955	.	G	A	.	clustered_events;germline_risk;homologous_mapping_event;t_lod_fstar	ECNT=3;HCNT=8;MAX_ED=5;MIN_ED=2;NLOD=2.11;TLOD=4.50	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:0,1:1.00:0:1:0.00:0|1:1955_G_A:0,34:0:0	0/0:6,0:0.00:0:0:.:0|1:1955_G_A:186,0:4:2
chr14_KI270724v1_random	1957	.	G	A	.	clustered_events;germline_risk;homologous_mapping_event;t_lod_fstar	ECNT=3;HCNT=8;MAX_ED=5;MIN_ED=2;NLOD=1.81;TLOD=4.50	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:0,1:1.00:0:1:0.00:0|1:1955_G_A:0,34:0:0	0/0:5,0:0.00:0:0:.:0|1:1955_G_A:167,0:4:1
chr14_KI270724v1_random	1960	.	T	C	.	clustered_events;germline_risk;homologous_mapping_event;t_lod_fstar	ECNT=3;HCNT=8;MAX_ED=5;MIN_ED=2;NLOD=1.51;TLOD=4.50	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:0,1:1.00:0:1:0.00:0|1:1955_G_A:0,28:0:0	0/0:5,0:0.00:0:0:.:0|1:1955_G_A:155,0:4:1
chr14_KI270724v1_random	2626	.	A	T	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=8;HCNT=21;MAX_ED=59;MIN_ED=2;NLOD=3.93;TLOD=5.90	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:25,2:0.074:2:0:0.00:0|1:2626_A_T:788,62:14:11	0/0:28,4:0.129:2:2:0.500:0|1:2626_A_T:887,130:11:17
chr14_KI270724v1_random	2628	.	T	C	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=8;HCNT=21;MAX_ED=59;MIN_ED=2;NLOD=4.53;TLOD=5.90	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:24,2:0.074:2:0:1.00:0|1:2626_A_T:781,60:13:11	0/0:28,4:0.121:2:2:0.500:0|1:2626_A_T:908,98:11:17
chr14_KI270724v1_random	2637	.	C	T	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=8;HCNT=21;MAX_ED=59;MIN_ED=2;NLOD=5.63;TLOD=5.78	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:29,2:0.065:2:0:0.00:0|1:2626_A_T:862,62:14:15	0/0:33,4:0.108:2:2:0.500:0|1:2626_A_T:921,130:14:19
chr14_KI270724v1_random	2666	.	C	CCG	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=8;HCNT=5;MAX_ED=59;MIN_ED=2;NLOD=14.76;TLOD=5.65	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:34,2:0.056:2:0:.:0|1:2666_C_CCG:1142,68:14:20	0/0:61,2:0.030:1:1:.:0|1:2666_C_CCG:2047,70:30:31
chr14_KI270724v1_random	2668	.	GCA	G	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=8;HCNT=5;MAX_ED=59;MIN_ED=2;NLOD=15.97;TLOD=5.67	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:34,2:0.057:2:0:.:0|1:2666_C_CCG:1143,70:14:20	0/0:67,2:0.029:1:1:.:0|1:2666_C_CCG:2215,67:35:32
chr14_KI270724v1_random	2676	.	C	T	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=8;HCNT=5;MAX_ED=59;MIN_ED=2;NLOD=16.27;TLOD=5.60	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:35,2:0.053:2:0:0.00:0|1:2666_C_CCG:1078,65:14:21	0/0:69,2:0.028:1:1:0.500:0|1:2666_C_CCG:2174,63:35:34
chr14_KI270724v1_random	2682	.	A	G	.	clustered_events;multi_event_alt_allele_in_normal;t_lod_fstar	ECNT=8;HCNT=5;MAX_ED=59;MIN_ED=2;NLOD=19.27;TLOD=5.53	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:38,2:0.049:2:0:0.00:0|1:2666_C_CCG:1208,66:16:22	0/0:65,1:0.015:0:1:1.00:0|1:2666_C_CCG:2122,33:35:30
chr14_KI270724v1_random	2685	.	A	G	.	clustered_events;multi_event_alt_allele_in_normal;t_lod_fstar	ECNT=8;HCNT=5;MAX_ED=59;MIN_ED=2;NLOD=18.96;TLOD=5.55	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:40,2:0.050:2:0:0.00:0|1:2666_C_CCG:1227,62:17:23	0/0:64,1:0.015:0:1:1.00:0|1:2666_C_CCG:2039,34:34:30
chr14_KI270724v1_random	2718	.	G	T	.	clustered_events;homologous_mapping_event	ECNT=10;HCNT=9;MAX_ED=203;MIN_ED=40;NLOD=9.06;TLOD=7.71	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:34,5:0.081:0:1:0.00:976,33:17:17	0/0:59,0:0.017:0:0:.:1715,0:25:34
chr14_KI270724v1_random	2758	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=10;HCNT=15;MAX_ED=203;MIN_ED=40;NLOD=4.26;TLOD=21.32	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:48,7:0.137:2:5:0.714:1499,233:23:25	0/0:62,4:0.063:2:2:0.500:1924,136:27:35
chr14_KI270724v1_random	2778	.	A	C	.	clustered_events;multi_event_alt_allele_in_normal	ECNT=10;HCNT=4;MAX_ED=203;MIN_ED=40;NLOD=15.32;TLOD=8.55	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:59,2:0.059:0:2:1.00:1869,59:27:32	0/0:76,1:0.014:1:0:0.00:2359,30:36:40
chr14_KI270724v1_random	2782	.	C	G	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=10;HCNT=6;MAX_ED=203;MIN_ED=40;NLOD=4.56;TLOD=5.24	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:54,2:0.022:0:2:1.00:0|1:2782_C_G:1842,71:24:30	0/0:67,5:0.041:2:3:0.600:0|1:2782_C_G:2268,178:31:36
chr14_KI270724v1_random	2784	.	G	C	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=10;HCNT=8;MAX_ED=203;MIN_ED=40;NLOD=2.77;TLOD=5.34	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:57,2:0.039:0:2:0.00:1840,71:26:31	0/0:71,6:0.083:2:4:0.333:2335,211:33:38
chr14_KI270724v1_random	2788	.	T	G	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=10;HCNT=6;MAX_ED=203;MIN_ED=40;NLOD=7.57;TLOD=5.37	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:58,2:0.041:0:2:0.00:0|1:2782_C_G:1885,64:26:32	0/0:76,5:0.068:2:3:0.400:0|1:2782_C_G:2485,158:34:42
chr14_KI270724v1_random	2795	.	G	A	.	clustered_events;multi_event_alt_allele_in_normal;t_lod_fstar	ECNT=10;HCNT=2;MAX_ED=203;MIN_ED=40;NLOD=15.67;TLOD=5.34	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:53,3:0.039:0:3:0.00:0|1:2795_G_A:1796,95:25:28	0/0:73,1:0.014:1:0:1.00:0|1:2795_G_A:2507,33:34:39
chr14_KI270724v1_random	2816	.	C	T	.	clustered_events;multi_event_alt_allele_in_normal;t_lod_fstar	ECNT=10;HCNT=2;MAX_ED=203;MIN_ED=40;NLOD=11.45;TLOD=5.62	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:39,3:0.054:0:3:1.00:0|1:2795_G_A:1367,99:17:22	0/0:55,1:0.019:1:0:0.00:0|1:2795_G_A:1921,34:25:30
chr14_KI270724v1_random	2825	.	C	T	.	clustered_events;multi_event_alt_allele_in_normal;t_lod_fstar	ECNT=10;HCNT=2;MAX_ED=203;MIN_ED=40;NLOD=11.15;TLOD=5.60	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:38,3:0.053:0:3:1.00:0|1:2795_G_A:1342,93:18:20	0/0:52,1:0.019:1:0:0.00:0|1:2795_G_A:1849,31:27:25
chr14_KI270724v1_random	2921	.	T	G	.	clustered_events;germline_risk;homologous_mapping_event	ECNT=10;HCNT=20;MAX_ED=203;MIN_ED=40;NLOD=2.11;TLOD=7.05	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:6,2:0.250:0:2:0.00:207,58:3:3	0/0:7,0:0.00:0:0:.:232,0:2:5
chr14_KI270724v1_random	5238	.	GC	G	.	clustered_events;germline_risk;homologous_mapping_event	ECNT=6;HCNT=60;MAX_ED=195;MIN_ED=8;NLOD=0.602;RPA=3,2;RU=C;STR;TLOD=8.17	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:1,2:0.667:0:2:.:0|1:5238_GC_G:35,70:1:0	0/0:2,0:0.00:0:0:.:0|1:5238_GC_G:69,0:1:1
chr14_KI270724v1_random	5246	.	C	A	.	clustered_events;germline_risk;homologous_mapping_event	ECNT=6;HCNT=60;MAX_ED=195;MIN_ED=8;NLOD=0.602;TLOD=8.17	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:1,2:0.667:0:2:1.00:0|1:5238_GC_G:36,70:1:0	0/0:2,0:0.00:0:0:.:0|1:5238_GC_G:68,0:1:1
chr14_KI270724v1_random	5269	.	C	A	.	clustered_events;germline_risk;homologous_mapping_event;t_lod_fstar	ECNT=6;HCNT=52;MAX_ED=195;MIN_ED=8;NLOD=1.50;TLOD=5.75	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:2,2:0.500:0:2:1.00:69,70:0:2	0/0:7,0:0.00:0:0:.:236,0:4:3
chr14_KI270724v1_random	5353	.	C	T	.	alt_allele_in_normal;clustered_events;germline_risk;t_lod_fstar	ECNT=6;HCNT=50;MAX_ED=195;MIN_ED=8;NLOD=0.938;TLOD=5.60	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:10,3:0.250:1:2:0.667:342,93:5:5	0/0:16,1:0.063:0:1:1.00:550,31:11:5
chr14_KI270724v1_random	5404	.	T	C	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=6;HCNT=38;MAX_ED=195;MIN_ED=8;NLOD=3.91;TLOD=4.78	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:11,2:0.182:0:2:0.00:352,69:7:4	0/0:14,1:0.067:0:1:0.00:451,36:8:6
chr14_KI270724v1_random	5433	.	A	G	.	alt_allele_in_normal;clustered_events;germline_risk	ECNT=6;HCNT=44;MAX_ED=195;MIN_ED=8;NLOD=0.536;TLOD=6.31	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:17,3:0.167:0:3:1.00:531,105:8:9	0/0:24,2:0.091:0:2:1.00:718,70:16:8
chr14_KI270724v1_random	27733	.	G	T	.	clustered_events;t_lod_fstar	ECNT=2;HCNT=2;MAX_ED=18;MIN_ED=18;NLOD=3.91;TLOD=4.49	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:3,2:0.400:0:2:0.00:91,67:1:2	0/0:17,0:0.00:0:0:.:530,0:9:8
chr14_KI270724v1_random	27751	.	G	A	.	alt_allele_in_normal;clustered_events;germline_risk	ECNT=2;HCNT=2;MAX_ED=18;MIN_ED=18;NLOD=1.04;TLOD=6.88	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:7,3:0.300:1:2:0.333:202,97:2:5	0/0:18,4:0.182:2:2:0.500:548,134:10:8
chr14_KI270725v1_random	58608	.	C	T	.	alt_allele_in_normal;germline_risk;t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=0.938;TLOD=4.16	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:27,2:0.074:0:2:1.00:955,63:16:11	0/0:17,1:0.063:0:1:1.00:596,31:8:9
chr16_KI270728v1_random	864756	.	AAG	A	.	alt_allele_in_normal;str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.79;RPA=8,7;RU=AG;STR;TLOD=5.08	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:30,3:0.091:1:2:.:962,102:17:13	0/0:35,3:0.079:1:2:.:1172,105:15:20
chr17_GL000205v2_random	60127	.	G	A	.	t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.31;TLOD=5.31	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:11,2:0.167:2:0:1.00:379,67:6:5	0/0:11,0:0.00:0:0:.:369,0:4:7
chr22_KI270731v1_random	3296	.	G	GT	.	alt_allele_in_normal;germline_risk;t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.29;RPA=1,2;RU=T;STR;TLOD=4.07	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:21,2:0.083:1:1:.:704,72:10:11	0/0:17,1:0.056:0:1:.:585,36:8:9
chr22_KI270732v1_random	30276	.	C	T	.	alt_allele_in_normal;t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=5.15;TLOD=5.34	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:56,3:0.053:2:1:0.333:1680,91:22:34	0/0:40,2:0.049:1:1:0.500:1165,63:24:16
chrUn_KI270442v1	217257	.	T	C	.	alt_allele_in_normal;germline_risk;t_lod_fstar	ECNT=1;HCNT=7;MAX_ED=.;MIN_ED=.;NLOD=1.22;TLOD=5.25	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:18,4:0.111:2:2:0.500:574,129:9:9	0/0:18,2:0.053:0:2:0.00:585,69:6:12
chrUn_KI270442v1	225777	.	C	T	.	alt_allele_in_normal;t_lod_fstar	ECNT=1;HCNT=8;MAX_ED=.;MIN_ED=.;NLOD=11.15;TLOD=5.27	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:59,2:0.036:1:1:0.500:2089,68:26:33	0/0:58,2:0.036:0:2:1.00:2031,63:28:30
chrUn_KI270438v1	109598	.	G	T	.	germline_risk;t_lod_fstar	ECNT=1;HCNT=12;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=5.07	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:11,4:0.182:4:0:1.00:377,127:6:5	0/0:7,0:0.00:0:0:.:250,0:3:4
chrUn_GL000219v1	77684	.	T	G	.	alt_allele_in_normal	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=6.43;TLOD=8.37	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:49,4:0.085:0:4:0.00:1521,142:24:25	0/0:38,3:0.057:0:3:0.00:1181,103:20:18
chrUn_GL000219v1	88334	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=4;HCNT=4;MAX_ED=100;MIN_ED=98;NLOD=66.79;TLOD=8.61	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:419,6:0.016:3:3:0.500:13335,203:176:243	0/0:383,14:0.036:10:4:0.286:12315,470:211:172
chrUn_GL000219v1	88432	.	AATTG	A	.	alt_allele_in_normal;clustered_events	ECNT=4;HCNT=5;MAX_ED=100;MIN_ED=98;NLOD=16.29;TLOD=19.15	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:226,9:0.035:3:6:.:7571,303:90:136	0/0:258,19:0.067:9:10:.:8663,638:118:140
chrUn_GL000219v1	88433	.	AT	A	.	alt_allele_in_normal;clustered_events	ECNT=4;HCNT=9;MAX_ED=100;MIN_ED=98;NLOD=36.65;RPA=2,1;RU=T;STR;TLOD=12.81	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:211,12:0.046:6:6:.:6866,401:84:127	0/0:245,20:0.074:10:10:.:8081,669:112:133
chrUn_GL000219v1	88434	.	T	A	.	alt_allele_in_normal;clustered_events	ECNT=4;HCNT=5;MAX_ED=100;MIN_ED=98;NLOD=27.52;TLOD=10.70	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:218,9:0.040:3:6:0.333:7324,293:90:128	0/0:251,20:0.076:8:12:0.400:8399,661:117:134
chrUn_KI270746v1	36340	.	T	G	.	alt_allele_in_normal;clustered_events;germline_risk	ECNT=3;HCNT=6;MAX_ED=64;MIN_ED=40;NLOD=1.21;TLOD=35.28	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:73,11:0.129:3:8:0.273:2331,359:24:49	0/0:58,8:0.130:4:4:0.500:1847,262:20:38
chrUn_KI270746v1	36380	.	T	C	.	alt_allele_in_normal;clustered_events;germline_risk	ECNT=3;HCNT=4;MAX_ED=64;MIN_ED=40;NLOD=1.96;TLOD=21.44	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:35,7:0.167:4:3:0.571:0|1:36380_T_C:1094,240:13:22	0/0:31,2:0.061:0:2:0.00:0|1:36380_T_C:957,66:17:14
chrUn_KI270746v1	36404	.	A	G	.	alt_allele_in_normal;clustered_events;germline_risk	ECNT=3;HCNT=4;MAX_ED=64;MIN_ED=40;NLOD=2.12;TLOD=16.97	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:19,5:0.192:2:3:0.600:0|1:36380_T_C:622,173:6:13	0/0:20,1:0.045:0:1:1.00:0|1:36380_T_C:646,36:12:8
chrUn_KI270746v1	48281	.	A	T	.	alt_allele_in_normal;clustered_events;germline_risk	ECNT=3;HCNT=20;MAX_ED=169;MIN_ED=160;NLOD=1.32;TLOD=59.41	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:47,22:0.314:15:7:0.318:1590,704:22:25	0/0:70,5:0.067:3:2:0.400:2366,159:43:27
chrUn_KI270746v1	48441	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=3;HCNT=11;MAX_ED=169;MIN_ED=160;NLOD=8.83;TLOD=6.94	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:83,2:0.035:0:2:0.00:0|1:48441_G_A:2838,68:45:38	0/0:56,4:0.069:2:2:0.500:0|1:48441_G_A:1914,106:27:29
chrUn_KI270746v1	48450	.	A	G	.	alt_allele_in_normal;clustered_events;germline_risk	ECNT=3;HCNT=11;MAX_ED=169;MIN_ED=160;NLOD=1.08;TLOD=7.18	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:67,3:0.042:0:3:1.00:0|1:48441_G_A:2047,107:37:30	0/0:56,6:0.102:3:3:0.500:0|1:48441_G_A:1726,195:30:26
chrUn_KI270746v1	60597	.	T	C	.	alt_allele_in_normal;t_lod_fstar	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=30.13;TLOD=5.18	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:177,6:0.034:5:1:0.833:5711,148:103:74	0/0:158,15:0.090:9:6:0.600:5139,427:78:80
chrUn_GL000216v2	143170	.	T	A	.	germline_risk	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=0.602;TLOD=11.30	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,3:0.750:0:3:0.00:34,90:1:0	0/0:2,0:0.00:0:0:.:67,0:2:0
chrUn_GL000216v2	143889	.	C	T	.	germline_risk;t_lod_fstar	ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=5.40	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:6,2:0.250:0:2:1.00:178,64:2:4	0/0:7,0:0.00:0:0:.:245,0:4:3
chrUn_GL000216v2	144489	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=5;HCNT=6;MAX_ED=26;MIN_ED=8;NLOD=3.31;TLOD=10.85	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:7,3:0.300:3:0:1.00:0|1:144489_G_A:200,100:5:2	0/0:11,1:0.083:0:1:0.00:0|1:144489_G_A:343,30:6:5
chrUn_GL000216v2	144497	.	A	G	.	alt_allele_in_normal;clustered_events	ECNT=5;HCNT=6;MAX_ED=26;MIN_ED=8;NLOD=3.31;TLOD=10.85	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:7,3:0.300:3:0:0.00:0|1:144489_G_A:195,106:5:2	0/0:11,1:0.083:0:1:1.00:0|1:144489_G_A:354,29:6:5
chrUn_GL000216v2	144507	.	G	T	.	clustered_events;homologous_mapping_event	ECNT=5;HCNT=6;MAX_ED=26;MIN_ED=8;NLOD=3.01;TLOD=10.85	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:6,3:0.300:3:0:1.00:0|1:144489_G_A:202,97:5:1	0/0:8,0:0.00:0:0:.:0|1:144489_G_A:260,0:3:5
chrUn_GL000216v2	144508	.	G	T	.	clustered_events;homologous_mapping_event	ECNT=5;HCNT=6;MAX_ED=26;MIN_ED=8;NLOD=3.01;TLOD=11.01	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:6,3:0.333:3:0:1.00:0|1:144489_G_A:202,99:5:1	0/0:8,0:0.00:0:0:.:0|1:144489_G_A:272,0:3:5
chrUn_GL000216v2	144515	.	C	CAATGT	.	clustered_events;germline_risk;homologous_mapping_event	ECNT=5;HCNT=6;MAX_ED=26;MIN_ED=8;NLOD=1.51;TLOD=11.25	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:4,2:0.273:2:0:.:0|1:144489_G_A:110,72:3:1	0/0:5,0:0.00:0:0:.:0|1:144489_G_A:137,0:2:3
chrUn_GL000216v2	161149	.	T	C	.	alt_allele_in_normal;clustered_events	ECNT=13;HCNT=11;MAX_ED=215;MIN_ED=125;NLOD=3.05;TLOD=7.77	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:12,3:0.200:2:1:0.667:400,102:10:2	0/0:23,1:0.042:1:0:1.00:756,34:15:8
chrUn_GL000216v2	161274	.	G	T	.	alt_allele_in_normal;clustered_events	ECNT=13;HCNT=4;MAX_ED=215;MIN_ED=125;NLOD=11.85;TLOD=7.24	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:134,5:0.022:2:3:0.400:0|1:161274_G_T:3941,162:65:69	0/0:143,9:0.053:2:7:0.222:0|1:161274_G_T:4280,286:60:83
chrUn_GL000216v2	161285	.	AG	A	.	alt_allele_in_normal;clustered_events	ECNT=13;HCNT=4;MAX_ED=215;MIN_ED=125;NLOD=20.27;TLOD=7.06	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:160,5:0.019:2:3:.:0|1:161274_G_T:5252,162:82:78	0/0:172,10:0.044:3:7:.:0|1:161274_G_T:5684,321:69:103
chrUn_GL000216v2	161293	.	T	A	.	alt_allele_in_normal;clustered_events	ECNT=13;HCNT=4;MAX_ED=215;MIN_ED=125;NLOD=22.08;TLOD=6.96	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:175,5:0.018:2:3:0.400:0|1:161274_G_T:5709,161:90:85	0/0:196,10:0.043:3:7:0.300:0|1:161274_G_T:6478,320:78:118
chrUn_GL000216v2	161311	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=13;HCNT=4;MAX_ED=215;MIN_ED=125;NLOD=22.71;TLOD=15.43	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:199,9:0.032:4:5:0.556:0|1:161311_C_T:6272,264:103:96	0/0:228,17:0.059:9:8:0.471:0|1:161311_C_T:7233,523:98:130
chrUn_GL000216v2	161319	.	G	C	.	alt_allele_in_normal;clustered_events	ECNT=13;HCNT=4;MAX_ED=215;MIN_ED=125;NLOD=20.92;TLOD=15.42	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:195,11:0.031:5:6:0.455:0|1:161311_C_T:6042,368:95:100	0/0:230,21:0.069:11:10:0.524:0|1:161311_C_T:7012,658:97:133
chrUn_GL000216v2	161325	.	A	C	.	alt_allele_in_normal;clustered_events	ECNT=13;HCNT=4;MAX_ED=215;MIN_ED=125;NLOD=19.72;TLOD=15.37	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:209,11:0.031:5:6:0.545:0|1:161311_C_T:6852,374:104:105	0/0:237,21:0.070:11:10:0.476:0|1:161311_C_T:7680,698:103:134
chrUn_GL000216v2	161326	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=13;HCNT=4;MAX_ED=215;MIN_ED=125;NLOD=19.42;TLOD=15.37	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:209,11:0.031:5:6:0.455:0|1:161311_C_T:7349,345:104:105	0/0:238,21:0.070:11:10:0.524:0|1:161311_C_T:8351,690:103:135
chrUn_GL000216v2	161342	.	G	C	.	alt_allele_in_normal;clustered_events	ECNT=13;HCNT=4;MAX_ED=215;MIN_ED=125;NLOD=20.02;TLOD=18.34	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:208,9:0.035:4:5:0.444:0|1:161311_C_T:6948,304:108:100	0/0:230,16:0.062:7:9:0.438:0|1:161311_C_T:7558,495:106:124
chrUn_GL000216v2	161343	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=13;HCNT=4;MAX_ED=215;MIN_ED=125;NLOD=19.72;TLOD=15.39	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:208,9:0.031:4:5:0.444:0|1:161311_C_T:6973,254:109:99	0/0:235,16:0.062:7:9:0.438:0|1:161311_C_T:7913,493:107:128
chrUn_GL000216v2	161354	.	T	G	.	alt_allele_in_normal;clustered_events	ECNT=13;HCNT=4;MAX_ED=215;MIN_ED=125;NLOD=15.49;TLOD=12.62	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:192,6:0.028:2:4:0.333:0|1:161311_C_T:6202,205:104:88	0/0:198,13:0.067:6:7:0.462:0|1:161311_C_T:6379,430:96:102
chrUn_GL000216v2	161358	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=13;HCNT=4;MAX_ED=215;MIN_ED=125;NLOD=15.49;TLOD=12.59	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:185,6:0.028:2:4:0.667:0|1:161311_C_T:6357,184:98:87	0/0:194,11:0.063:5:6:0.545:0|1:161311_C_T:6768,332:94:100
chrUn_GL000216v2	161364	.	AG	A	.	alt_allele_in_normal;clustered_events	ECNT=13;HCNT=4;MAX_ED=215;MIN_ED=125;NLOD=19.69;RPA=3,2;RU=G;STR;TLOD=9.78	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:181,5:0.024:2:3:.:0|1:161311_C_T:5857,163:92:89	0/0:188,9:0.053:4:5:.:0|1:161311_C_T:5998,293:93:95
chrUn_GL000216v2	171711	.	C	A	.	t_lod_fstar	ECNT=1;HCNT=8;MAX_ED=.;MIN_ED=.;NLOD=6.64;TLOD=5.87	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:27,2:0.071:1:1:0.500:922,65:18:9	0/0:45,1:0.024:1:0:0.00:1517,23:23:22
chrUn_GL000218v1	41457	.	C	T	.	alt_allele_in_normal;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.94;TLOD=5.26	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:17,3:0.150:0:3:1.00:571,88:5:12	0/0:27,2:0.074:2:0:0.00:882,58:11:16
chrUn_GL000218v1	41605	.	C	T	.	alt_allele_in_normal	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=15.00;TLOD=16.14	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:86,9:0.111:3:6:0.667:2599,303:39:47	0/0:97,5:0.054:4:1:0.200:2906,153:49:48
chr3_KI270779v1_alt	166505	.	C	T	.	alt_allele_in_normal	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.84;TLOD=30.57	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:14,13:0.481:9:4:0.308:469,415:8:6	0/0:23,1:0.043:1:0:0.00:792,33:13:10
chr7_KI270803v1_alt	515721	.	TTG	T	.	alt_allele_in_normal;str_contraction;t_lod_fstar	ECNT=1;HCNT=6;MAX_ED=.;MIN_ED=.;NLOD=12.48;RPA=8,7;RU=TG;STR;TLOD=4.62	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:44,3:0.064:2:1:.:1454,97:24:20	0/0:60,2:0.032:2:0:.:1921,65:38:22
chr16_KI270853v1_alt	862054	.	C	T	.	alt_allele_in_normal;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=8.66;TLOD=4.93	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:43,3:0.081:3:0:0.00:1320,98:28:15	0/0:48,2:0.043:0:2:1.00:1513,65:31:17
chr5_KI270898v1_alt	130668	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=2;HCNT=4;MAX_ED=85;MIN_ED=85;NLOD=9.93;TLOD=39.36	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:25,21:0.410:14:7:0.333:847,674:12:13	0/0:37,2:0.054:0:2:1.00:1239,64:16:21
chr5_KI270898v1_alt	130753	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=2;HCNT=4;MAX_ED=85;MIN_ED=85;NLOD=6.45;TLOD=11.85	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:26,6:0.194:4:2:0.667:853,202:11:15	0/0:34,2:0.059:0:2:0.00:1121,63:19:15
chr11_KI270902v1_alt	80790	.	T	C	.	alt_allele_in_normal;clustered_events	ECNT=3;HCNT=6;MAX_ED=18;MIN_ED=1;NLOD=8.47;TLOD=6.70	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:227,3:0.014:1:2:0.333:0|1:80790_T_C:7295,103:139:88	0/0:88,5:0.054:3:2:0.600:0|1:80790_T_C:2798,166:60:28
chr11_KI270902v1_alt	80791	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=3;HCNT=6;MAX_ED=18;MIN_ED=1;NLOD=8.47;TLOD=6.68	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:224,3:0.014:1:2:0.333:0|1:80790_T_C:7685,95:139:85	0/0:89,5:0.053:3:2:0.600:0|1:80790_T_C:3120,164:61:28
chr11_KI270902v1_alt	80808	.	G	A	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=3;HCNT=6;MAX_ED=18;MIN_ED=1;NLOD=10.58;TLOD=4.13	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:204,2:9.852e-03:1:1:0.500:0|1:80790_T_C:6936,66:126:78	0/0:103,3:0.029:2:1:0.667:0|1:80790_T_C:3473,98:67:36
chr11_KI270902v1_alt	80943	.	A	G	.	alt_allele_in_normal;clustered_events	ECNT=3;HCNT=37;MAX_ED=7;MIN_ED=6;NLOD=19.10;TLOD=14.59	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:411,10:0.022:7:3:0.300:12934,353:266:145	0/0:282,21:0.075:14:7:0.333:8874,720:174:108
chr11_KI270902v1_alt	80949	.	T	C	.	alt_allele_in_normal;clustered_events	ECNT=3;HCNT=17;MAX_ED=7;MIN_ED=6;NLOD=60.29;TLOD=8.25	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:433,6:9.852e-03:6:0:1.00:0|1:80949_T_C:13515,210:279:154	0/0:307,9:0.030:5:4:0.556:0|1:80949_T_C:9514,308:192:115
chr11_KI270902v1_alt	80950	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=3;HCNT=17;MAX_ED=7;MIN_ED=6;NLOD=60.59;TLOD=8.30	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:437,6:0.010:6:0:1.00:0|1:80949_T_C:14747,195:281:156	0/0:308,9:0.030:5:4:0.556:0|1:80949_T_C:10507,299:193:115
chr11_KI270902v1_alt	81917	.	A	G	.	alt_allele_in_normal;clustered_events	ECNT=2;HCNT=15;MAX_ED=15;MIN_ED=15;NLOD=6.48;TLOD=19.46	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:105,10:0.101:7:3:0.300:3376,323:69:36	0/0:121,6:0.057:4:2:0.333:3808,197:72:49
chr11_KI270902v1_alt	81932	.	A	G	.	alt_allele_in_normal;clustered_events	ECNT=2;HCNT=8;MAX_ED=15;MIN_ED=15;NLOD=2.23;TLOD=10.68	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:95,2:0.039:2:0:0.00:3056,70:62:33	0/0:122,6:0.052:3:3:0.500:3933,215:68:54
chr11_KI270902v1_alt	82135	.	G	C	.	alt_allele_in_normal;clustered_events	ECNT=3;HCNT=6;MAX_ED=21;MIN_ED=11;NLOD=22.94;TLOD=7.41	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:126,3:0.025:2:1:0.667:0|1:82135_G_C:4260,105:75:51	0/0:129,7:0.056:5:2:0.714:0|1:82135_G_C:4430,237:74:55
chr11_KI270902v1_alt	82146	.	T	C	.	alt_allele_in_normal;clustered_events	ECNT=3;HCNT=6;MAX_ED=21;MIN_ED=11;NLOD=16.87;TLOD=7.30	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:109,3:0.014:2:1:0.667:0|1:82135_G_C:3355,104:69:40	0/0:113,9:0.037:5:4:0.556:0|1:82135_G_C:3531,310:64:49
chr11_KI270902v1_alt	82156	.	G	A	.	clustered_events;multi_event_alt_allele_in_normal;t_lod_fstar	ECNT=3;HCNT=6;MAX_ED=21;MIN_ED=11;NLOD=34.86;TLOD=5.41	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:123,5:0.036:3:2:0.600:3846,140:73:50	0/0:140,1:7.143e-03:1:0:1.00:4318,29:84:56
chr11_KI270902v1_alt	82880	.	G	C	.	alt_allele_in_normal;clustered_events	ECNT=2;HCNT=4;MAX_ED=97;MIN_ED=97;NLOD=71.49;TLOD=46.86	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:340,22:0.064:16:6:0.727:11727,754:199:141	0/0:365,7:0.020:5:2:0.714:12806,254:222:143
chr11_KI270902v1_alt	82977	.	T	C	.	alt_allele_in_normal;clustered_events	ECNT=2;HCNT=8;MAX_ED=97;MIN_ED=97;NLOD=22.35;TLOD=14.88	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:231,5:0.026:4:1:0.800:7532,162:134:97	0/0:144,5:0.040:3:2:0.600:4713,166:75:69
chr11_KI270902v1_alt	83851	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=2;HCNT=10;MAX_ED=139;MIN_ED=139;NLOD=3.01;TLOD=45.48	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:537,34:0.059:17:17:0.500:18086,1027:309:228	0/0:544,56:0.095:33:23:0.589:18825,1729:311:233
chr11_KI270902v1_alt	83990	.	C	T	.	alt_allele_in_normal;clustered_events	ECNT=2;HCNT=5;MAX_ED=139;MIN_ED=139;NLOD=3.30;TLOD=8.58	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:329,4:0.012:2:2:0.500:11243,128:205:124	0/0:279,31:0.101:19:12:0.387:9558,1020:165:114
chr11_KI270902v1_alt	84044	.	A	T	.	alt_allele_in_normal;clustered_events	ECNT=5;HCNT=22;MAX_ED=80;MIN_ED=17;NLOD=19.69;TLOD=11.56	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:297,5:0.017:4:1:0.200:0|1:84044_A_T:9684,166:181:116	0/0:282,14:0.049:9:5:0.357:0|1:84044_A_T:9201,455:167:115
chr11_KI270902v1_alt	84061	.	T	G	.	alt_allele_in_normal;clustered_events	ECNT=5;HCNT=22;MAX_ED=80;MIN_ED=17;NLOD=8.11;TLOD=14.59	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:277,7:0.025:4:3:0.571:0|1:84044_A_T:9177,244:163:114	0/0:297,18:0.058:12:6:0.667:0|1:84044_A_T:9723,619:180:117
chr11_KI270902v1_alt	84095	.	T	C	.	alt_allele_in_normal;clustered_events	ECNT=5;HCNT=29;MAX_ED=80;MIN_ED=17;NLOD=15.27;TLOD=9.98	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:237,5:0.020:2:3:0.400:0|1:84095_T_C:7671,181:146:91	0/0:293,14:0.047:8:6:0.571:0|1:84095_T_C:9423,479:184:109
chr11_KI270902v1_alt	84118	.	C	G	.	alt_allele_in_normal;clustered_events	ECNT=5;HCNT=29;MAX_ED=80;MIN_ED=17;NLOD=35.76;TLOD=6.51	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:211,3:0.013:1:2:0.667:0|1:84095_T_C:6731,100:127:84	0/0:284,7:0.027:5:2:0.286:0|1:84095_T_C:9059,232:180:104
chr11_KI270902v1_alt	84124	.	G	A	.	alt_allele_in_normal;clustered_events	ECNT=5;HCNT=29;MAX_ED=80;MIN_ED=17;NLOD=39.54;TLOD=6.45	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:235,3:0.012:1:2:0.333:0|1:84095_T_C:6934,88:139:96	0/0:296,7:0.023:5:2:0.714:0|1:84095_T_C:9048,213:183:113
chr11_KI270902v1_alt	84234	.	C	A	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=2;HCNT=3;MAX_ED=9;MIN_ED=9;NLOD=22.59;TLOD=6.05	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:171,3:0.022:3:0:0.00:0|1:84234_C_A:5742,96:92:79	0/0:242,11:0.036:6:5:0.455:0|1:84234_C_A:8172,355:131:111
chr11_KI270902v1_alt	84243	.	T	C	.	alt_allele_in_normal;clustered_events	ECNT=2;HCNT=3;MAX_ED=9;MIN_ED=9;NLOD=16.09;TLOD=7.39	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:155,2:0.024:1:1:0.500:0|1:84234_C_A:4860,64:82:73	0/0:212,9:0.038:5:4:0.556:0|1:84234_C_A:6614,283:114:98
chr11_KI270902v1_alt	86921	.	G	A	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=2;HCNT=4;MAX_ED=4;MIN_ED=4;NLOD=4.27;TLOD=4.52	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:125,2:0.016:2:0:1.00:0|1:86921_G_A:4282,67:72:53	0/0:79,4:0.048:3:1:0.750:0|1:86921_G_A:2626,124:41:38
chr11_KI270902v1_alt	86925	.	T	A	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=2;HCNT=4;MAX_ED=4;MIN_ED=4;NLOD=4.27;TLOD=4.59	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:117,2:0.017:2:0:1.00:0|1:86921_G_A:3908,62:67:50	0/0:81,2:0.048:1:1:0.500:0|1:86921_G_A:2600,65:43:38
chr17_KI270908v1_alt	1039699	.	AGT	A	.	germline_risk;str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;RPA=8,7;RU=GT;STR;TLOD=4.85	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:4,2:0.333:2:0:.:120,63:1:3	0/0:6,0:0.00:0:0:.:188,0:3:3
chr11_KI270927v1_alt	88601	.	A	G	.	alt_allele_in_normal;t_lod_fstar	ECNT=2;HCNT=2;MAX_ED=1;MIN_ED=1;NLOD=29.32;TLOD=6.01	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:392,3:8.621e-03:2:1:0.333:0|1:88601_A_G:12346,102:231:161	0/0:209,8:0.040:5:3:0.375:0|1:88601_A_G:6535,259:132:77
chr11_KI270927v1_alt	88602	.	T	G	.	alt_allele_in_normal;t_lod_fstar	ECNT=2;HCNT=2;MAX_ED=1;MIN_ED=1;NLOD=29.32;TLOD=6.01	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:389,3:8.571e-03:2:1:0.667:0|1:88601_A_G:12589,101:231:158	0/0:213,8:0.040:5:3:0.625:0|1:88601_A_G:6888,254:136:77
chr11_KI270927v1_alt	89208	.	C	T	.	PASS	ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=4.82;TLOD=18.74	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:8,5:0.385:4:1:0.200:231,154:4:4	0/0:50,0:0.00:0:0:.:1473,0:25:25
chr11_KI270927v1_alt	90052	.	A	G	.	alt_allele_in_normal	ECNT=1;HCNT=8;MAX_ED=.;MIN_ED=.;NLOD=7.15;TLOD=7.33	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:42,4:0.091:1:3:0.750:1270,123:23:19	0/0:56,3:0.055:1:2:0.667:1671,103:37:19
chr11_KI270927v1_alt	90405	.	C	A	.	alt_allele_in_normal;clustered_events;t_lod_fstar	ECNT=4;HCNT=17;MAX_ED=124;MIN_ED=20;NLOD=9.37;TLOD=4.13	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:49,3:0.057:3:0:0.00:1673,94:33:16	0/0:78,6:0.071:5:1:0.167:2639,191:57:21
chr11_KI270927v1_alt	90425	.	A	G	.	clustered_events;multi_event_alt_allele_in_normal;t_lod_fstar	ECNT=4;HCNT=36;MAX_ED=124;MIN_ED=20;NLOD=11.79;TLOD=5.25	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:58,2:0.036:2:0:0.00:0|1:90425_A_G:1786,69:38:20	0/0:104,1:0.029:1:0:0.00:0|1:90425_A_G:3217,33:76:28
chr11_KI270927v1_alt	90430	.	G	T	.	clustered_events;multi_event_alt_allele_in_normal;t_lod_fstar	ECNT=4;HCNT=36;MAX_ED=124;MIN_ED=20;NLOD=19.88;TLOD=5.27	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1	0/1:58,2:0.036:2:0:1.00:0|1:90425_A_G:1956,63:38:20	0/0:111,1:9.346e-03:1:0:1.00:0|1:90425_A_G:3794,31:82:29
chr11_KI270927v1_alt	90529	.	G	C	.	alt_allele_in_normal;clustered_events	ECNT=4;HCNT=22;MAX_ED=124;MIN_ED=20;NLOD=15.67;TLOD=18.15	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:61,6:0.087:5:1:0.833:2063,159:41:20	0/0:155,2:0.013:2:0:1.00:5340,55:100:55
chr11_KI270927v1_alt	91414	.	CTG	C	.	str_contraction;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=10.52;RPA=5,4;RU=TG;STR;TLOD=4.30	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:51,2:0.045:2:0:.:1789,71:42:9	0/0:53,0:0.00:0:0:.:1766,0:33:20
chr6_GL000256v2_alt	1051481	.	C	T	.	germline_risk;t_lod_fstar	ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=4.49	GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1	0/1:1,2:0.667:1:1:0.500:35,63:1:0	0/0:5,0:0.00:0:0:.:174,0:2:3