FROM debian:8.11
MAINTAINER aokad <aokada@ncc.go.jp>

# Install ant, git for building
RUN apt-get update && \
    apt-get --no-install-recommends install -y --force-yes python2.7 python-pip \
    wget ssl-cert ca-certificates \
    tar bzip2 \
    make g++ zlib1g-dev  libncurses5-dev libbz2-dev liblzma-dev && \
    apt-get clean autoclean && \
    apt-get autoremove -y 

RUN mkdir /tools
WORKDIR /tools

RUN wget -nc https://sourceforge.net/projects/samtools/files/samtools/1.9/samtools-1.9.tar.bz2 && \
    tar xjvf samtools-1.9.tar.bz2 && \
    rm -f samtools-1.9.tar.bz2 && \
    cd /tools/samtools-1.9 && \
    make && \
    make install 

CMD ["/bin/bash"]