aid: amazon-healthomics
name: Amazon HealthOmics
description: AWS HealthOmics is a purpose-built service for healthcare and life sciences organizations that helps store, query,
  and analyze genomic, transcriptomic, and other omics data to generate insights and accelerate scientific discoveries and
  improve healthcare.
type: Index
image: https://kinlane-productions.s3.amazonaws.com/apis-json/apis-json-logo.jpg
tags:
- AWS
- Bioinformatics
- Genomics
- Healthcare
- Life Sciences
- Cloud Computing
url: https://raw.githubusercontent.com/api-evangelist/amazon-healthomics/refs/heads/main/apis.yml
created: '2026-03-16'
modified: '2026-05-19'
specificationVersion: '0.19'
apis:
- aid: amazon-healthomics:aws-healthomics-api
  name: AWS HealthOmics API
  description: The AWS HealthOmics API provides programmatic access to manage omics storage, workflows, run groups, annotation
    stores, and variant stores for genomics and other omics data analysis.
  humanURL: https://aws.amazon.com/healthomics/
  baseURL: https://omics.amazonaws.com
  tags:
  - Genomics
  - Healthcare
  - Life Sciences
  - Bioinformatics
  - Workflows
  properties:
  - type: Documentation
    url: https://docs.aws.amazon.com/omics/latest/api/Welcome.html
  - type: OpenAPI
    url: openapi/amazon-healthomics-openapi.yaml
  - type: GettingStarted
    url: https://aws.amazon.com/healthomics/getting-started/
  - type: Pricing
    url: https://aws.amazon.com/healthomics/pricing/
  - type: FAQ
    url: https://aws.amazon.com/healthomics/faqs/
  - type: APIReference
    url: https://docs.aws.amazon.com/omics/latest/api/Welcome.html
  - type: Authentication
    url: https://docs.aws.amazon.com/omics/latest/api/CommonParameters.html
  - type: JSONSchema
    url: json-schema/healthomics-abort-multipart-read-set-upload-request-schema.json
  - type: JSONLD
    url: json-ld/amazon-healthomics-context.jsonld
  - type: NaftikoCapability
    url: capabilities/amazon-healthomics.yaml
common:
- type: Portal
  url: https://aws.amazon.com/healthomics/
- type: Documentation
  url: https://docs.aws.amazon.com/omics/
- type: TermsOfService
  url: https://aws.amazon.com/service-terms/
- type: PrivacyPolicy
  url: https://aws.amazon.com/privacy/
- type: Support
  url: https://aws.amazon.com/premiumsupport/
- type: Blog
  url: https://aws.amazon.com/blogs/industries/healthcare/
- type: GitHubOrganization
  url: https://github.com/aws
- type: Console
  url: https://console.aws.amazon.com/omics/
- type: SignUp
  url: https://portal.aws.amazon.com/billing/signup
- type: StatusPage
  url: https://health.aws.amazon.com/health/status
- type: Contact
  url: https://aws.amazon.com/contact-us/
- type: SDK
  url: https://aws.amazon.com/developer/tools/
- type: CLI
  url: https://awscli.amazonaws.com/v2/documentation/api/latest/reference/omics/index.html
- type: Features
  data:
  - name: Omics Storage
    description: Purpose-built storage for genomic, transcriptomic, and other omics data with automatic optimization.
  - name: Bioinformatics Workflows
    description: Run industry-standard bioinformatics tools and pipelines using WDL and Nextflow workflow definitions.
  - name: Annotation Stores
    description: Store and query genomic annotation data from sources like ClinVar, Ensembl, and custom datasets.
  - name: Variant Stores
    description: Store and query genomic variant data in VCF and other standard bioinformatics formats.
  - name: Sequence Stores
    description: Efficiently store and retrieve genomic sequence read sets in FASTQ, BAM, and CRAM formats.
  - name: Reference Genomes
    description: Store and access reference genome files for alignment and analysis workflows.
  - name: Managed Compute
    description: Fully managed compute infrastructure for running bioinformatics workflows at scale.
- type: UseCases
  data:
  - name: Whole Genome Sequencing
    description: Store, analyze, and interpret whole genome sequencing data for research and clinical applications.
  - name: Variant Calling Pipelines
    description: Run standard variant calling workflows on genomic data to identify genetic variants.
  - name: Pharmacogenomics Research
    description: Analyze genomic data to understand drug response and develop personalized medicine approaches.
  - name: Population Genomics
    description: Process and analyze large-scale genomic datasets across patient populations for research.
  - name: Clinical Genomics
    description: Support clinical genomics workflows for diagnosis and treatment of genetic disorders.
- type: Integrations
  data:
  - name: Amazon S3
    description: Import and export omics data using S3 as the primary data source and destination.
  - name: AWS IAM
    description: Control access to HealthOmics resources using IAM roles and policies.
  - name: Amazon CloudWatch
    description: Monitor HealthOmics workflows and storage operations through CloudWatch metrics.
  - name: AWS Lake Formation
    description: Govern and secure genomic data lake access using Lake Formation permissions.
  - name: Amazon Athena
    description: Query genomic annotation and variant data stored in HealthOmics using Athena.
  - name: AWS Batch
    description: Supplement HealthOmics workflows with custom compute jobs using AWS Batch.
- type: SpectralRules
  url: rules/amazon-healthomics-spectral-rules.yml
- type: Vocabulary
  url: vocabulary/amazon-healthomics-vocabulary.yaml
- type: Integrations
  url: https://aws.amazon.com/marketplace
integrations:
- name: Sign in
- name: Agent Mode
- name: Why AWS Marketplace?
- name: Get started in AWS Marketplace
- name: Industry
- name: Resources
- name: Become a Channel Partner
- name: Sell in AWS Marketplace
- name: Manage Your Account
maintainers:
- FN: Kin Lane
  email: kin@apievangelist.com