openapi: 3.0.0
info:
  version: '2022-11-28'
  x-release: v4
  title: Amazon Omics AnnotationStore Import API
  description: This is the <i>AWS HealthOmics API Reference</i>. For an introduction to the service, see <a href="https://docs.aws.amazon.com/omics/latest/dev/">What is AWS HealthOmics?</a> in the <i>AWS HealthOmics User Guide</i>.
  x-logo:
    url: https://twitter.com/awscloud/profile_image?size=original
    backgroundColor: '#FFFFFF'
  termsOfService: https://aws.amazon.com/service-terms/
  contact:
    name: Mike Ralphson
    email: mike.ralphson@gmail.com
    url: https://github.com/mermade/aws2openapi
    x-twitter: PermittedSoc
  license:
    name: Apache 2.0 License
    url: http://www.apache.org/licenses/
  x-providerName: amazonaws.com
  x-serviceName: omics
  x-aws-signingName: omics
  x-origin:
  - contentType: application/json
    url: https://raw.githubusercontent.com/aws/aws-sdk-js/master/apis/omics-2022-11-28.normal.json
    converter:
      url: https://github.com/mermade/aws2openapi
      version: 1.0.0
    x-apisguru-driver: external
  x-apiClientRegistration:
    url: https://portal.aws.amazon.com/gp/aws/developer/registration/index.html?nc2=h_ct
  x-apisguru-categories:
  - cloud
  x-preferred: true
servers:
- url: http://omics.{region}.amazonaws.com
  variables:
    region:
      description: The AWS region
      enum:
      - us-east-1
      - us-east-2
      - us-west-1
      - us-west-2
      - us-gov-west-1
      - us-gov-east-1
      - ca-central-1
      - eu-north-1
      - eu-west-1
      - eu-west-2
      - eu-west-3
      - eu-central-1
      - eu-south-1
      - af-south-1
      - ap-northeast-1
      - ap-northeast-2
      - ap-northeast-3
      - ap-southeast-1
      - ap-southeast-2
      - ap-east-1
      - ap-south-1
      - sa-east-1
      - me-south-1
      default: us-east-1
  description: The Amazon Omics multi-region endpoint
- url: https://omics.{region}.amazonaws.com
  variables:
    region:
      description: The AWS region
      enum:
      - us-east-1
      - us-east-2
      - us-west-1
      - us-west-2
      - us-gov-west-1
      - us-gov-east-1
      - ca-central-1
      - eu-north-1
      - eu-west-1
      - eu-west-2
      - eu-west-3
      - eu-central-1
      - eu-south-1
      - af-south-1
      - ap-northeast-1
      - ap-northeast-2
      - ap-northeast-3
      - ap-southeast-1
      - ap-southeast-2
      - ap-east-1
      - ap-south-1
      - sa-east-1
      - me-south-1
      default: us-east-1
  description: The Amazon Omics multi-region endpoint
- url: http://omics.{region}.amazonaws.com.cn
  variables:
    region:
      description: The AWS region
      enum:
      - cn-north-1
      - cn-northwest-1
      default: cn-north-1
  description: The Amazon Omics endpoint for China (Beijing) and China (Ningxia)
- url: https://omics.{region}.amazonaws.com.cn
  variables:
    region:
      description: The AWS region
      enum:
      - cn-north-1
      - cn-northwest-1
      default: cn-north-1
  description: The Amazon Omics endpoint for China (Beijing) and China (Ningxia)
security:
- hmac: []
tags:
- name: Import
paths:
  /import/annotation/{jobId}:
    parameters:
    - $ref: '#/components/parameters/X-Amz-Content-Sha256'
    - $ref: '#/components/parameters/X-Amz-Date'
    - $ref: '#/components/parameters/X-Amz-Algorithm'
    - $ref: '#/components/parameters/X-Amz-Credential'
    - $ref: '#/components/parameters/X-Amz-Security-Token'
    - $ref: '#/components/parameters/X-Amz-Signature'
    - $ref: '#/components/parameters/X-Amz-SignedHeaders'
    delete:
      operationId: CancelAnnotationImportJob
      description: Cancels an annotation import job.
      responses:
        '200':
          description: Success
          content:
            application/json:
              schema:
                $ref: '#/components/schemas/CancelAnnotationImportResponse'
        '480':
          description: InternalServerException
          content:
            application/json:
              schema:
                $ref: '#/components/schemas/InternalServerException'
        '481':
          description: ThrottlingException
          content:
            application/json:
              schema:
                $ref: '#/components/schemas/ThrottlingException'
        '482':
          description: ValidationException
          content:
            application/json:
              schema:
                $ref: '#/components/schemas/ValidationException'
        '483':
          description: ResourceNotFoundException
          content:
            application/json:
              schema:
                $ref: '#/components/schemas/ResourceNotFoundException'
        '484':
          description: AccessDeniedException
          content:
            application/json:
              schema:
                $ref: '#/components/schemas/AccessDeniedException'
      parameters:
      - name: jobId
        in: path
        required: true
        description: The job's ID.
        schema:
          type: string
          pattern: '[a-f0-9]{8}-[a-f0-9]{4}-[a-f0-9]{4}-[a-f0-9]{4}-[a-f0-9]{12}'
      summary: Amazon HealthOmics Cancel Annotation Import Job
      x-microcks-operation:
        delay: 0
        dispatcher: FALLBACK
      tags:
      - Import
    get:
      operationId: GetAnnotationImportJob
      description: Gets information about an annotation import job.
      responses:
        '200':
          description: Success
          content:
            application/json:
              schema:
                $ref: '#/components/schemas/GetAnnotationImportResponse'
        '480':
          description: InternalServerException
          content:
            application/json:
              schema:
                $ref: '#/components/schemas/InternalServerException'
        '481':
          description: ThrottlingException
          content:
            application/json:
              schema:
                $ref: '#/components/schemas/ThrottlingException'
        '482':
          description: ValidationException
          content:
            application/json:
              schema:
                $ref: '#/components/schemas/ValidationException'
        '483':
          description: ResourceNotFoundException
          content:
            application/json:
              schema:
                $ref: '#/components/schemas/ResourceNotFoundException'
        '484':
          description: AccessDeniedException
          content:
            application/json:
              schema:
                $ref: '#/components/schemas/AccessDeniedException'
      parameters:
      - name: jobId
        in: path
        required: true
        description: The job's ID.
        schema:
          type: string
          pattern: '[a-f0-9]{8}-[a-f0-9]{4}-[a-f0-9]{4}-[a-f0-9]{4}-[a-f0-9]{12}'
      summary: Amazon HealthOmics Get Annotation Import Job
      x-microcks-operation:
        delay: 0
        dispatcher: FALLBACK
      tags:
      - Import
  /import/variant/{jobId}:
    parameters:
    - $ref: '#/components/parameters/X-Amz-Content-Sha256'
    - $ref: '#/components/parameters/X-Amz-Date'
    - $ref: '#/components/parameters/X-Amz-Algorithm'
    - $ref: '#/components/parameters/X-Amz-Credential'
    - $ref: '#/components/parameters/X-Amz-Security-Token'
    - $ref: '#/components/parameters/X-Amz-Signature'
    - $ref: '#/components/parameters/X-Amz-SignedHeaders'
    delete:
      operationId: CancelVariantImportJob
      description: Cancels a variant import job.
      responses:
        '200':
          description: Success
          content:
            application/json:
              schema:
                $ref: '#/components/schemas/CancelVariantImportResponse'
        '480':
          description: InternalServerException
          content:
            application/json:
              schema:
                $ref: '#/components/schemas/InternalServerException'
        '481':
          description: ThrottlingException
          content:
            application/json:
              schema:
                $ref: '#/components/schemas/ThrottlingException'
        '482':
          description: ValidationException
          content:
            application/json:
              schema:
                $ref: '#/components/schemas/ValidationException'
        '483':
          description: ResourceNotFoundException
          content:
            application/json:
              schema:
                $ref: '#/components/schemas/ResourceNotFoundException'
        '484':
          description: AccessDeniedException
          content:
            application/json:
              schema:
                $ref: '#/components/schemas/AccessDeniedException'
      parameters:
      - name: jobId
        in: path
        required: true
        description: The job's ID.
        schema:
          type: string
          pattern: '[a-f0-9]{8}-[a-f0-9]{4}-[a-f0-9]{4}-[a-f0-9]{4}-[a-f0-9]{12}'
      summary: Amazon HealthOmics Cancel Variant Import Job
      x-microcks-operation:
        delay: 0
        dispatcher: FALLBACK
      tags:
      - Import
    get:
      operationId: GetVariantImportJob
      description: Gets information about a variant import job.
      responses:
        '200':
          description: Success
          content:
            application/json:
              schema:
                $ref: '#/components/schemas/GetVariantImportResponse'
        '480':
          description: InternalServerException
          content:
            application/json:
              schema:
                $ref: '#/components/schemas/InternalServerException'
        '481':
          description: ThrottlingException
          content:
            application/json:
              schema:
                $ref: '#/components/schemas/ThrottlingException'
        '482':
          description: ValidationException
          content:
            application/json:
              schema:
                $ref: '#/components/schemas/ValidationException'
        '483':
          description: ResourceNotFoundException
          content:
            application/json:
              schema:
                $ref: '#/components/schemas/ResourceNotFoundException'
        '484':
          description: AccessDeniedException
          content:
            application/json:
              schema:
                $ref: '#/components/schemas/AccessDeniedException'
      parameters:
      - name: jobId
        in: path
        required: true
        description: The job's ID.
        schema:
          type: string
          pattern: '[a-f0-9]{8}-[a-f0-9]{4}-[a-f0-9]{4}-[a-f0-9]{4}-[a-f0-9]{12}'
      summary: Amazon HealthOmics Get Variant Import Job
      x-microcks-operation:
        delay: 0
        dispatcher: FALLBACK
      tags:
      - Import
  /import/annotations:
    parameters:
    - $ref: '#/components/parameters/X-Amz-Content-Sha256'
    - $ref: '#/components/parameters/X-Amz-Date'
    - $ref: '#/components/parameters/X-Amz-Algorithm'
    - $ref: '#/components/parameters/X-Amz-Credential'
    - $ref: '#/components/parameters/X-Amz-Security-Token'
    - $ref: '#/components/parameters/X-Amz-Signature'
    - $ref: '#/components/parameters/X-Amz-SignedHeaders'
    post:
      operationId: ListAnnotationImportJobs
      description: Retrieves a list of annotation import jobs.
      responses:
        '200':
          description: Success
          content:
            application/json:
              schema:
                $ref: '#/components/schemas/ListAnnotationImportJobsResponse'
        '480':
          description: InternalServerException
          content:
            application/json:
              schema:
                $ref: '#/components/schemas/InternalServerException'
        '481':
          description: ThrottlingException
          content:
            application/json:
              schema:
                $ref: '#/components/schemas/ThrottlingException'
        '482':
          description: ValidationException
          content:
            application/json:
              schema:
                $ref: '#/components/schemas/ValidationException'
        '483':
          description: ResourceNotFoundException
          content:
            application/json:
              schema:
                $ref: '#/components/schemas/ResourceNotFoundException'
        '484':
          description: AccessDeniedException
          content:
            application/json:
              schema:
                $ref: '#/components/schemas/AccessDeniedException'
      parameters:
      - name: maxResults
        in: query
        required: false
        description: The maximum number of jobs to return in one page of results.
        schema:
          type: integer
          minimum: 1
          maximum: 100
      - name: nextToken
        in: query
        required: false
        description: Specify the pagination token from a previous request to retrieve the next page of results.
        schema:
          type: string
          minLength: 1
          maxLength: 10000
      requestBody:
        required: true
        content:
          application/json:
            schema:
              type: object
              properties:
                ids:
                  description: IDs of annotation import jobs to retrieve.
                  type: array
                  items:
                    $ref: '#/components/schemas/ResourceIdentifier'
                  minItems: 1
                  maxItems: 20
                filter:
                  description: A filter for annotation import jobs.
                  type: object
                  properties:
                    status:
                      allOf:
                      - $ref: '#/components/schemas/JobStatus'
                      - description: A status to filter on.
                    storeName:
                      allOf:
                      - $ref: '#/components/schemas/String'
                      - description: A store name to filter on.
      summary: Amazon HealthOmics List Annotation Import Jobs
      x-microcks-operation:
        delay: 0
        dispatcher: FALLBACK
      tags:
      - Import
  /import/variants:
    parameters:
    - $ref: '#/components/parameters/X-Amz-Content-Sha256'
    - $ref: '#/components/parameters/X-Amz-Date'
    - $ref: '#/components/parameters/X-Amz-Algorithm'
    - $ref: '#/components/parameters/X-Amz-Credential'
    - $ref: '#/components/parameters/X-Amz-Security-Token'
    - $ref: '#/components/parameters/X-Amz-Signature'
    - $ref: '#/components/parameters/X-Amz-SignedHeaders'
    post:
      operationId: ListVariantImportJobs
      description: Retrieves a list of variant import jobs.
      responses:
        '200':
          description: Success
          content:
            application/json:
              schema:
                $ref: '#/components/schemas/ListVariantImportJobsResponse'
        '480':
          description: InternalServerException
          content:
            application/json:
              schema:
                $ref: '#/components/schemas/InternalServerException'
        '481':
          description: ThrottlingException
          content:
            application/json:
              schema:
                $ref: '#/components/schemas/ThrottlingException'
        '482':
          description: ValidationException
          content:
            application/json:
              schema:
                $ref: '#/components/schemas/ValidationException'
        '483':
          description: ResourceNotFoundException
          content:
            application/json:
              schema:
                $ref: '#/components/schemas/ResourceNotFoundException'
        '484':
          description: AccessDeniedException
          content:
            application/json:
              schema:
                $ref: '#/components/schemas/AccessDeniedException'
      parameters:
      - name: maxResults
        in: query
        required: false
        description: The maximum number of import jobs to return in one page of results.
        schema:
          type: integer
          minimum: 1
          maximum: 100
      - name: nextToken
        in: query
        required: false
        description: Specify the pagination token from a previous request to retrieve the next page of results.
        schema:
          type: string
          minLength: 1
          maxLength: 10000
      requestBody:
        required: true
        content:
          application/json:
            schema:
              type: object
              properties:
                ids:
                  description: A list of job IDs.
                  type: array
                  items:
                    $ref: '#/components/schemas/ResourceIdentifier'
                  minItems: 1
                  maxItems: 20
                filter:
                  description: A filter for variant import jobs.
                  type: object
                  properties:
                    status:
                      allOf:
                      - $ref: '#/components/schemas/JobStatus'
                      - description: A status to filter on.
                    storeName:
                      allOf:
                      - $ref: '#/components/schemas/String'
                      - description: A store name to filter on.
      summary: Amazon HealthOmics List Variant Import Jobs
      x-microcks-operation:
        delay: 0
        dispatcher: FALLBACK
      tags:
      - Import
  /import/annotation:
    parameters:
    - $ref: '#/components/parameters/X-Amz-Content-Sha256'
    - $ref: '#/components/parameters/X-Amz-Date'
    - $ref: '#/components/parameters/X-Amz-Algorithm'
    - $ref: '#/components/parameters/X-Amz-Credential'
    - $ref: '#/components/parameters/X-Amz-Security-Token'
    - $ref: '#/components/parameters/X-Amz-Signature'
    - $ref: '#/components/parameters/X-Amz-SignedHeaders'
    post:
      operationId: StartAnnotationImportJob
      description: Starts an annotation import job.
      responses:
        '200':
          description: Success
          content:
            application/json:
              schema:
                $ref: '#/components/schemas/StartAnnotationImportResponse'
        '480':
          description: InternalServerException
          content:
            application/json:
              schema:
                $ref: '#/components/schemas/InternalServerException'
        '481':
          description: ServiceQuotaExceededException
          content:
            application/json:
              schema:
                $ref: '#/components/schemas/ServiceQuotaExceededException'
        '482':
          description: ThrottlingException
          content:
            application/json:
              schema:
                $ref: '#/components/schemas/ThrottlingException'
        '483':
          description: ValidationException
          content:
            application/json:
              schema:
                $ref: '#/components/schemas/ValidationException'
        '484':
          description: ResourceNotFoundException
          content:
            application/json:
              schema:
                $ref: '#/components/schemas/ResourceNotFoundException'
        '485':
          description: AccessDeniedException
          content:
            application/json:
              schema:
                $ref: '#/components/schemas/AccessDeniedException'
      parameters: []
      requestBody:
        required: true
        content:
          application/json:
            schema:
              type: object
              required:
              - destinationName
              - roleArn
              - items
              properties:
                destinationName:
                  description: A destination annotation store for the job.
                  type: string
                  pattern: ([a-z]){1}([a-z0-9_]){2,254}
                  minLength: 3
                  maxLength: 255
                roleArn:
                  description: A service role for the job.
                  type: string
                  pattern: 'arn:([^: ]*):([^: ]*):([^: ]*):([0-9]{12}):([^: ]*)'
                  minLength: 20
                  maxLength: 2048
                items:
                  description: Items to import.
                  type: array
                  items:
                    $ref: '#/components/schemas/AnnotationImportItemSource'
                  minItems: 1
                formatOptions:
                  description: Formatting options for a file.
                  type: object
                  properties:
                    tsvOptions:
                      allOf:
                      - $ref: '#/components/schemas/TsvOptions'
                      - description: Options for a TSV file.
                    vcfOptions:
                      allOf:
                      - $ref: '#/components/schemas/VcfOptions'
                      - description: Options for a VCF file.
                runLeftNormalization:
                  description: The job's left normalization setting.
                  type: boolean
                annotationFields:
                  description: ' The annotation schema generated by the parsed annotation data. '
                  type: object
                  additionalProperties:
                    $ref: '#/components/schemas/AnnotationFieldMapValueString'
      summary: Amazon HealthOmics Start Annotation Import Job
      x-microcks-operation:
        delay: 0
        dispatcher: FALLBACK
      tags:
      - Import
  /import/variant:
    parameters:
    - $ref: '#/components/parameters/X-Amz-Content-Sha256'
    - $ref: '#/components/parameters/X-Amz-Date'
    - $ref: '#/components/parameters/X-Amz-Algorithm'
    - $ref: '#/components/parameters/X-Amz-Credential'
    - $ref: '#/components/parameters/X-Amz-Security-Token'
    - $ref: '#/components/parameters/X-Amz-Signature'
    - $ref: '#/components/parameters/X-Amz-SignedHeaders'
    post:
      operationId: StartVariantImportJob
      description: Starts a variant import job.
      responses:
        '200':
          description: Success
          content:
            application/json:
              schema:
                $ref: '#/components/schemas/StartVariantImportResponse'
        '480':
          description: InternalServerException
          content:
            application/json:
              schema:
                $ref: '#/components/schemas/InternalServerException'
        '481':
          description: ServiceQuotaExceededException
          content:
            application/json:
              schema:
                $ref: '#/components/schemas/ServiceQuotaExceededException'
        '482':
          description: ThrottlingException
          content:
            application/json:
              schema:
                $ref: '#/components/schemas/ThrottlingException'
        '483':
          description: ValidationException
          content:
            application/json:
              schema:
                $ref: '#/components/schemas/ValidationException'
        '484':
          description: ResourceNotFoundException
          content:
            application/json:
              schema:
                $ref: '#/components/schemas/ResourceNotFoundException'
        '485':
          description: AccessDeniedException
          content:
            application/json:
              schema:
                $ref: '#/components/schemas/AccessDeniedException'
      parameters: []
      requestBody:
        required: true
        content:
          application/json:
            schema:
              type: object
              required:
              - destinationName
              - roleArn
              - items
              properties:
                destinationName:
                  description: The destination variant store for the job.
                  type: string
                  pattern: ([a-z]){1}([a-z0-9_]){2,254}
                  minLength: 3
                  maxLength: 255
                roleArn:
                  description: A service role for the job.
                  type: string
                  pattern: 'arn:([^: ]*):([^: ]*):([^: ]*):([0-9]{12}):([^: ]*)'
                  minLength: 20
                  maxLength: 2048
                items:
                  description: Items to import.
                  type: array
                  items:
                    $ref: '#/components/schemas/VariantImportItemSource'
                  minItems: 1
                runLeftNormalization:
                  description: The job's left normalization setting.
                  type: boolean
                annotationFields:
                  description: ' The annotation schema generated by the parsed annotation data. '
                  type: object
                  additionalProperties:
                    $ref: '#/components/schemas/AnnotationFieldMapValueString'
      summary: Amazon HealthOmics Start Variant Import Job
      x-microcks-operation:
        delay: 0
        dispatcher: FALLBACK
      tags:
      - Import
components:
  schemas:
    Arn:
      type: string
      pattern: 'arn:([^: ]*):([^: ]*):([^: ]*):([0-9]{12}):([^: ]*)'
      minLength: 20
      maxLength: 2048
    VariantImportJobItems:
      type: array
      items:
        $ref: '#/components/schemas/VariantImportJobItem'
    AnnotationImportItemSource:
      type: object
      required:
      - source
      properties:
        source:
          allOf:
          - $ref: '#/components/schemas/S3Uri'
          - description: The source file's location in Amazon S3.
      description: A source for an annotation import job.
    ResourceNotFoundException: {}
    CancelVariantImportResponse:
      type: object
      properties: {}
    CreationTime:
      type: string
      format: date-time
    ListVariantImportJobsResponse:
      type: object
      properties:
        variantImportJobs:
          allOf:
          - $ref: '#/components/schemas/VariantImportJobItems'
          - description: A list of jobs.
        nextToken:
          allOf:
          - $ref: '#/components/schemas/String'
          - description: A pagination token that's included if more results are available.
    StartVariantImportResponse:
      type: object
      required:
      - jobId
      properties:
        jobId:
          allOf:
          - $ref: '#/components/schemas/ResourceId'
          - description: The job's ID.
    VariantImportItemDetails:
      type: array
      items:
        $ref: '#/components/schemas/VariantImportItemDetail'
      minItems: 1
    JobStatusMsg:
      type: string
    Encoding:
      type: string
      minLength: 1
      maxLength: 20
    TsvOptions:
      type: object
      properties:
        readOptions:
          allOf:
          - $ref: '#/components/schemas/ReadOptions'
          - description: The file's read options.
      description: Formatting options for a TSV file.
    GetAnnotationImportResponse:
      type: object
      required:
      - id
      - destinationName
      - roleArn
      - status
      - statusMessage
      - creationTime
      - updateTime
      - completionTime
      - items
      - runLeftNormalization
      - formatOptions
      properties:
        id:
          allOf:
          - $ref: '#/components/schemas/ResourceId'
          - description: The job's ID.
        destinationName:
          allOf:
          - $ref: '#/components/schemas/StoreName'
          - description: The job's destination annotation store.
        roleArn:
          allOf:
          - $ref: '#/components/schemas/Arn'
          - description: The job's service role ARN.
        status:
          allOf:
          - $ref: '#/components/schemas/JobStatus'
          - description: The job's status.
        statusMessage:
          allOf:
          - $ref: '#/components/schemas/JobStatusMsg'
          - description: The job's status message.
        creationTime:
          allOf:
          - $ref: '#/components/schemas/CreationTime'
          - description: When the job was created.
        updateTime:
          allOf:
          - $ref: '#/components/schemas/UpdateTime'
          - description: When the job was updated.
        completionTime:
          allOf:
          - $ref: '#/components/schemas/CompletionTime'
          - description: When the job completed.
        items:
          allOf:
          - $ref: '#/components/schemas/AnnotationImportItemDetails'
          - description: The job's imported items.
        runLeftNormalization:
          allOf:
          - $ref: '#/components/schemas/RunLeftNormalization'
          - description: The job's left normalization setting.
        formatOptions:
          $ref: '#/components/schemas/FormatOptions'
        annotationFields:
          allOf:
          - $ref: '#/components/schemas/AnnotationFieldMap'
          - description: ' The annotation schema generated by the parsed annotation data. '
    InternalServerException: {}
    EscapeChar:
      type: string
      minLength: 1
      maxLength: 1
    AnnotationImportItemDetail:
      type: object
      required:
      - source
      - jobStatus
      properties:
        source:
          allOf:
          - $ref: '#/components/schemas/S3Uri'
          - description: The source file's location in Amazon S3.
        jobStatus:
          allOf:
          - $ref: '#/components/schemas/JobStatus'
          - description: The item's job status.
      description: Details about an imported annotation item.
    S3Uri:
      type: string
      pattern: s3://([a-z0-9][a-z0-9-.]{1,61}[a-z0-9])/(.{1,1024})
    FormatOptions:
      type: object
      properties:
        tsvOptions:
          allOf:
          - $ref: '#/components/schemas/TsvOptions'
          - description: Options for a TSV file.
        vcfOptions:
          allOf:
          - $ref: '#/components/schemas/VcfOptions'
          - description: Options for a VCF file.
      description: Formatting options for a file.
    StoreName:
      type: string
      pattern: ([a-z]){1}([a-z0-9_]){2,254}
      minLength: 3
      maxLength: 255
    VariantImportItemSource:
      type: object
      required:
      - source
      properties:
        source:
          allOf:
          - $ref: '#/components/schemas/S3Uri'
          - description: The source file's location in Amazon S3.
      description: A imported variant item's source.
    AnnotationImportJobItem:
      type: object
      required:
      - id
      - destinationName
      - roleArn
      - status
      - creationTime
      - updateTime
      properties:
        id:
          allOf:
          - $ref: '#/components/schemas/String'
          - description: The job's ID.
        destinationName:
          allOf:
          - $ref: '#/components/schemas/String'
          - description: The job's destination annotation store.
        roleArn:
          allOf:
          - $ref: '#/components/schemas/Arn'
          - description: The job's service role ARN.
        status:
          allOf:
          - $ref: '#/components/schemas/JobStatus'
          - description: The job's status.
        creationTime:
          allOf:
          - $ref: '#/components/schemas/CreationTime'
          - description: When the job was created.
        updateTime:
          allOf:
          - $ref: '#/components/schemas/UpdateTime'
          - description: When the job was updated.
        completionTime:
          allOf:
          - $ref: '#/components/schemas/CompletionTime'
          - description: When the job completed.
        runLeftNormalization:
          allOf:
          - $ref: '#/components/schemas/RunLeftNormalization'
          - description: The job's left normalization setting.
        annotationFields:
          allOf:
          - $ref: '#/components/schemas/AnnotationFieldMap'
          - description: ' The annotation schema generated by the parsed annotation data. '
      description: An annotation import job.
    Separator:
      type: string
      minLength: 1
      maxLength: 20
    Boolean:
      type: boolean
    ResourceId:
      type: string
      pattern: '[a-f0-9]{8}-[a-f0-9]{4}-[a-f0-9]{4}-[a-f0-9]{4}-[a-f0-9]{12}'
    EscapeQuotes:
      type: boolean
    AnnotationFieldMapValueString:
      type: string
      minLength: 1
      maxLength: 21
    Quote:
      type: string
      minLength: 1
      maxLength: 1
    RunLeftNormalization:
      type: boolean
    AnnotationFieldMap:
      type: object
      additionalProperties:
        $ref: '#/components/schemas/AnnotationFieldMapValueString'
    ResourceIdentifier:
      type: string
      minLength: 1
      maxLength: 50
    ReadOptions:
      type: object
      properties:
        sep:
          allOf:
          - $ref: '#/components/schemas/Separator'
          - description: The file's field separator.
        encoding:
          allOf:
          - $ref: '#/components/schemas/Encoding'
          - description: The file's encoding.
        quote:
          allOf:
          - $ref: '#/components/schemas/Quote'
          - description: The file's quote character.
        quoteAll:
          allOf:
          - $ref: '#/components/schemas/QuoteAll'
          - description: Whether all values need to be quoted, or just those that contain quotes.
        escape:
          allOf:
          - $ref: '#/components/schemas/EscapeChar'
          - description: A character for escaping quotes in the file.
        escapeQuotes:
          allOf:
          - $ref: '#/components/schemas/EscapeQuotes'
          - description: Whether quotes need to be escaped in the file.
        comment:
          allOf:
          - $ref: '#/components/schemas/CommentChar'
          - description: The file's comment character.
        header:
          allOf:
          - $ref: '#/components/schemas/Header'
          - description: Whether the file has a header row.
        lineSep:
          allOf:
          - $ref: '#/components/schemas/LineSep'
          - description: A line separator for the file.
      description: Read options for an annotation import job.
    VariantImportItemDetail:
      type: object
      required:
      - source
      - jobStatus
      properties:
        source:
          allOf:
          - $ref: '#/components/schemas/S3Uri'
          - description: The source file's location in Amazon S3.
        jobStatus:
          allOf:
          - $ref: '#/components/schemas/JobStatus'
          - description: The item's job status.
        statusMessage:
          allOf:
          - $ref: '#/components/schemas/JobStatusMsg'
          - description: ' A message that provides additional context about a job '
      description: Details about an imported variant item.
    CommentChar:
      type: string
      minLength: 1
      maxLength: 1
    ThrottlingException: {}
    String:
      type: string
    ValidationException: {}
    LineSep:
      type: string
      minLength: 1
      maxLength: 20
    UpdateTime:
      type: string
      format: date-time
    CompletionTime:
      type: string
      format: date-time
    AnnotationImportItemDetails:
      type: array
      items:
        $ref: '#/components/schemas/AnnotationImportItemDetail'
      minItems: 1
      maxItems: 1
    CancelAnnotationImportResponse:
      type: object
      properties: {}
    GetVariantImportResponse:
      type: object
      required:
      - id
      - destinationName
      - roleArn
      - status
      - statusMessage
      - creationTime
      - updateTime
      - items
      - runLeftNormalization
      properties:
        id:
          allOf:
          - $ref: '#/components/schemas/ResourceId'
          - description: The job's ID.
        destinationName:
          allOf:
          - $ref: '#/components/schemas/StoreName'
          - description: The job's destination variant store.
        roleArn:
          allOf:
          - $ref: '#/components/schemas/Arn'
          - description: The job's service role ARN.
        status:
          allOf:
          - $ref: '#/components/schemas/JobStatus'
          - description: The job's status.
        statusMessage:
          allOf:
          - $ref: '#/components/schemas/JobStatusMsg'
          - description: The job's status message.
        creationTime:
          allOf:
          - $ref: '#/components/schemas/CreationTime'
          - description: When the job was created.
        updateTime:
          allOf:
          - $ref: '#/components/schemas/UpdateTime'
          - description: When the job was updated.
        completionTime:
          allOf:
          - $ref: '#/components/schemas/CompletionTime'
          - description: When the job completed.
        items:
          allOf:
          - $ref: '#/components/schemas/VariantImportItemDetails'
          - description: The job's items.
        runLeftNormalization:
          allOf:
          - $ref: '#/components/schemas/RunLeftNormalization'
          - description: The job's left normalization setting.
        annotationFields:
          allOf:
          - $ref: '#/components/schemas/AnnotationFieldMap'
          - description: ' The annotation schema generated by the parsed annotation data. '
    VcfOptions:
      type: object
      properties:
        ignoreQualField:
          allOf:
          - $ref: '#/components/schemas/Boolean'
          - description: The file's ignore qual field setting.
        ignoreFilterField:
          allOf:
          - $ref: '#/components/schemas/Boolean'
          - description: The file's ignore filter field setting.
      description: Formatting options for a VCF file.
    VariantImportJobItem:
      type: object
      required:
      - id
      - destinationName
      - roleArn
      - status
      - creationTime
      - updateTime
      properties:
        id:
          allOf:
          - $ref: '#/components/schemas/String'
          - description: The job's ID.
        destinationName:
          allOf:
          - $ref: '#/components/schemas/String'
          - description: The job's destination variant store.
        roleArn:
          allOf:
          - $ref: '#/components/schemas/Arn'
          - description: The job's service role ARN.
        status:
          allOf:
          - $ref: '#/components/schemas/JobStatus'
          - description: The job's status.
        creationTime:
          allOf:
          - $ref: '#/components/schemas/CreationTime'
          - description: When the job was created.
        updateTime:
          allOf:
          - $ref: '#/components/schemas/UpdateTime'
          - description: When the job was updated.
        completionTime:
          allOf:
          - $ref: '#/components/schemas/CompletionTime'
          - description: When the job completed.
        runLeftNormalization:
          allOf:
          - $ref: '#/components/schemas/RunLeftNormalization'
          - description: The job's left normalization setting.
        annotationFields:
          allOf:
          - $ref: '#/components/schemas/AnnotationFieldMap'
          - description: ' The annotation schema generated by the parsed annotation data. '
      description: A variant import job.
    AnnotationImportJobItems:
      type: array
      items:
        $ref: '#/components/schemas/AnnotationImportJobItem'
    Header:
      type: boolean
    QuoteAll:
      type: boolean
    JobStatus:
      type: string
      enum:
      - SUBMITTED
      - IN_PROGRESS
      - CANCELLED
      - COMPLETED
      - FAILED
      - COMPLETED_WITH_FAILURES
    ServiceQuotaExceededException: {}
    StartAnnotationImportResponse:
      type: object
      required:
      - jobId
      properties:
        jobId:
          allOf:
          - $ref: '#/components/schemas/ResourceId'
          - description: The job's ID.
    AccessDeniedException: {}
    ListAnnotationImportJobsResponse:
      type: object
      properties:
        annotationImportJobs:
          allOf:
          - $ref: '#/components/schemas/AnnotationImportJobItems'
          - description: A list of jobs.
        nextToken:
          allOf:
          - $ref: '#/components/schemas/String'
          - description: A pagination token that's included if more results are available.
  parameters:
    X-Amz-Content-Sha256:
      name: X-Amz-Content-Sha256
      in: header
      schema:
        type: string
      required: false
    X-Amz-Date:
      name: X-Amz-Date
      in: header
      schema:
        type: string
      required: false
    X-Amz-Security-Token:
      name: X-Amz-Security-Token
      in: header
      schema:
        type: string
      required: false
    X-Amz-SignedHeaders:
      name: X-Amz-SignedHeaders
      in: header
      schema:
        type: string
      required: false
    X-Amz-Algorithm:
      name: X-Amz-Algorithm
      in: header
      schema:
        type: string
      required: false
    X-Amz-Signature:
      name: X-Amz-Signature
      in: header
      schema:
        type: string
      required: false
    X-Amz-Credential:
      name: X-Amz-Credential
      in: header
      schema:
        type: string
      required: false
  securitySchemes:
    hmac:
      type: apiKey
      name: Authorization
      in: header
      description: Amazon Signature authorization v4
      x-amazon-apigateway-authtype: awsSigv4
externalDocs:
  description: Amazon Web Services documentation
  url: https://docs.aws.amazon.com/omics/
x-hasEquivalentPaths: true