# Arima Genomics

> Arima Genomics is a San Diego based cancer diagnostics company built on Hi-C sequencing and 3D genome science. It develops clinical tests and research products that detect cancer-driving structural alterations — noncanonical fusions, enhancer hijacking, extrachromosomal DNA (ecDNA) and complex rearrangements — from routine FFPE tumor tissue. Arima publishes open-source bioinformatics pipelines on GitHub, but operates no public web API, developer portal or machine-readable API specification.

<!--
generated: '2026-08-06'
method: generated
source: apis.yml + arimagenomics.com / discovery.arimagenomics.com (probed 2026-08-06)
note: |
  GENERATED by the API Evangelist enrichment pipeline from the catalog profile and
  probed public pages. Arima Genomics does not publish an llms.txt of its own —
  https://arimagenomics.com/llms.txt returned 404 and
  https://discovery.arimagenomics.com/llms.txt returned 404 on 2026-08-06.
  This file is a third-party summary, not a provider-authored document.
-->

## Company

- [Arima Genomics](https://arimagenomics.com/): Corporate site — cancer diagnostics built on Hi-C sequencing.
- [Company / About](https://arimagenomics.com/company): Founded 2015; mission, vision and the 2022 glioblastoma case that redirected the company toward clinical diagnostics.
- [Technology](https://arimagenomics.com/technology): How Arima Hi-C preserves chromatin structure, captures long-range DNA contacts and converts genome structure into sequencing data.
- [Clinical Tests](https://arimagenomics.com/clinical-tests): Aventa FusionPlus and Aventa Lymphoma — structure-based fusion and rearrangement detection from FFPE solid tumor tissue.
- [Biopharma Partnerships](https://arimagenomics.com/biopharma-partnerships): Biomarker discovery, indication expansion and translational development programs.
- [Translational Science](https://arimagenomics.com/translational-science): Posters, publications and scientific updates on enhancer hijacking, ecDNA and noncanonical rearrangements.
- [News](https://arimagenomics.com/news): Company announcements.
- [Contact](https://arimagenomics.com/contact): Contact form.

## Research products and services

- [Arima Discovery site](https://discovery.arimagenomics.com/): Research product and service catalog.
- [Products](https://discovery.arimagenomics.com/products/): Genome-Wide HiC, High Coverage HiC, HiC FFPE, Promoter Capture HiC, Custom Capture HiC, Arima CiFi.
- [Services](https://discovery.arimagenomics.com/services/): Including the Single Cell Methyl-3C service and multi-omics.
- [Applications](https://discovery.arimagenomics.com/applications/): Cancer genomics, epigenetics, structural variant detection, genome assembly, human health.

## Documentation (human-readable only)

- [Documentation library](https://discovery.arimagenomics.com/documentation/): Wet-lab kit user guides, quick reference guides, sample sheets and bioinformatics user guides — published as PDF. There is no API reference.
- [Bioinformatics User Guide — Arima HiC and High Coverage HiC](https://discovery.arimagenomics.com/wp-content/files/Bioinformatics-User-Guide-Arima-HiC-and-Arima-High-Coverage-HiC.pdf)
- [Bioinformatics User Guide — Arima Structural Variant Pipeline](https://discovery.arimagenomics.com/wp-content/files/Bioinformatics-User-Guide-Arima-Structural-Variant-Pipeline.pdf)
- [FAQs](https://discovery.arimagenomics.com/faqs/)
- [Resource library](https://discovery.arimagenomics.com/resources/)
- [Publications](https://discovery.arimagenomics.com/publication/)
- [Bioinformatics course](http://courses.arimagenomics.com)

## Open-source software

- [ArimaGenomics on GitHub](https://github.com/ArimaGenomics): Official organization (7 public repositories).
- [mapping_pipeline](https://github.com/ArimaGenomics/mapping_pipeline): Perl mapping pipeline for Arima-HiC data.
- [CHiC](https://github.com/ArimaGenomics/CHiC): Arima Capture HiC pipeline.
- [Arima-SV-Pipeline](https://github.com/ArimaGenomics/Arima-SV-Pipeline): Structural variant pipeline.
- [Juicer_pipeline_containers](https://github.com/ArimaGenomics/Juicer_pipeline_containers): Docker and Singularity images of the Juicer pipeline.

These are command-line analysis pipelines run against sequencing output. They are not client SDKs and there is no service endpoint behind them.

## API surface

None found. As of 2026-08-06 the following probes all missed:

- `/openapi.json`, `/openapi.yaml`, `/swagger.json`, `/v1/openapi.json`, `/api-docs`, `/docs`, `/redoc` — 404 on arimagenomics.com, discovery.arimagenomics.com and courses.arimagenomics.com.
- `/.well-known/security.txt`, `/openid-configuration`, `/oauth-authorization-server`, `/api-catalog`, `/ai-plugin.json`, `/agent-card.json`, `/agent.json` — 404 or redirect on every host.
- `api.arimagenomics.com`, `developer.arimagenomics.com`, `docs.arimagenomics.com`, `app.arimagenomics.com`, `portal.arimagenomics.com` — do not resolve.
- No first-party client library on npm, PyPI, Docker Hub or any other registry.

The only machine-readable endpoint on any Arima host is the generic WordPress REST API at
`https://discovery.arimagenomics.com/wp-json/` — CMS plumbing for the research site, not a product API.

## Feeds

- [Research site RSS](https://discovery.arimagenomics.com/feed/)

## Policies

- [Terms of Use](https://arimagenomics.com/terms-of-use)
- [Privacy Policy](https://arimagenomics.com/privacy-policy)

## About this file

Maintained by [API Evangelist](https://apievangelist.com) as an independent third-party
profile. Arima Genomics does not operate, endorse or maintain it. Corrections and removal
requests: info@apievangelist.com