{
  "$schema": "https://json-schema.org/draft/2020-12/schema",
  "$id": "https://raw.githubusercontent.com/api-evangelist/benchling/main/json-schema/benchling-dna-oligo-update-schema.json",
  "title": "DnaOligoUpdate",
  "x-generated": "2026-10-12",
  "x-method": "derived",
  "x-generator": "derive-json-schema.py",
  "x-source": "openapi/benchling-dna-oligos-api-openapi.yml#/components/schemas/DnaOligoUpdate",
  "allOf": [
    {
      "$ref": "#/$defs/OligoUpdate"
    },
    {
      "properties": {
        "annotations": {
          "description": "Annotations on the Oligo.",
          "items": {
            "$ref": "#/$defs/DnaAnnotation"
          },
          "type": "array"
        },
        "helm": {
          "description": "Representation of the oligo in HELM syntax, including any chemical modifications",
          "type": "string"
        }
      }
    },
    {
      "$ref": "#/$defs/CustomNotationRequest"
    }
  ],
  "$defs": {
    "CustomField": {
      "properties": {
        "value": {
          "type": "string"
        }
      },
      "type": "object"
    },
    "CustomFields": {
      "additionalProperties": {
        "$ref": "#/$defs/CustomField"
      },
      "type": "object"
    },
    "CustomNotationRequest": {
      "properties": {
        "customNotation": {
          "description": "Representation of the sequence or oligo in the custom notation specified by customNotationId",
          "type": "string"
        },
        "customNotationId": {
          "description": "ID of the notation used to interpret the string provided in the customNotation field",
          "type": "string"
        }
      },
      "type": "object"
    },
    "DnaAnnotation": {
      "allOf": [
        {
          "$ref": "#/$defs/SequenceFeatureBase"
        },
        {
          "properties": {
            "end": {
              "description": "0-based exclusive end index. The end of the sequence is always represented as 0.",
              "type": "integer"
            },
            "start": {
              "description": "0-based inclusive start index.",
              "type": "integer"
            },
            "strand": {
              "maximum": 1,
              "minimum": -1,
              "type": "integer"
            },
            "type": {
              "type": "string"
            }
          },
          "type": "object"
        }
      ]
    },
    "Field": {
      "properties": {
        "displayValue": {
          "readOnly": true,
          "type": [
            "string",
            "null"
          ]
        },
        "isMulti": {
          "readOnly": true,
          "type": "boolean"
        },
        "textValue": {
          "readOnly": true,
          "type": [
            "string",
            "null"
          ]
        },
        "type": {
          "allOf": [
            {
              "$ref": "#/$defs/FieldType"
            }
          ],
          "readOnly": true
        },
        "value": {
          "description": "For single link fields, use the id of the item you want to link (eg. \"seq_jdf8BV24\").\nFor multi-link fields, use an array of ids of the items you want to link (eg. [\"seq_jdf8BV24\"])\n",
          "oneOf": [
            {
              "type": "string"
            },
            {
              "type": "boolean"
            },
            {
              "type": "number"
            },
            {
              "type": "object"
            },
            {
              "items": {
                "type": "string"
              },
              "type": "array"
            }
          ]
        }
      },
      "required": [
        "value"
      ],
      "type": "object"
    },
    "FieldType": {
      "enum": [
        "dna_sequence_link",
        "aa_sequence_link",
        "custom_entity_link",
        "entity_link",
        "mixture_link",
        "molecule_link",
        "dropdown",
        "part_link",
        "translation_link",
        "aa_part_link",
        "base_molecule_link",
        "blob_link",
        "text",
        "long_text",
        "batch_link",
        "storage_link",
        "entry_link",
        "assay_request_link",
        "assay_result_link",
        "assay_run_link",
        "boolean",
        "float",
        "integer",
        "datetime",
        "date",
        "json"
      ],
      "type": "string"
    },
    "Fields": {
      "additionalProperties": {
        "$ref": "#/$defs/Field"
      },
      "type": "object"
    },
    "OligoBaseRequest": {
      "properties": {
        "aliases": {
          "description": "Aliases to add to the Oligo",
          "items": {
            "type": "string"
          },
          "type": "array"
        },
        "authorIds": {
          "description": "IDs of users to set as the Oligo's authors.",
          "items": {
            "type": "string"
          },
          "type": "array"
        },
        "bases": {
          "description": "Base pairs of the oligo.\n",
          "type": "string"
        },
        "customFields": {
          "allOf": [
            {
              "$ref": "#/$defs/CustomFields"
            }
          ],
          "description": "Custom fields to add to the Oligo. Every field should have its name as a key, mapping to an object with information about the value of the field.\n"
        },
        "fields": {
          "allOf": [
            {
              "$ref": "#/$defs/Fields"
            }
          ],
          "description": "Fields to set on the Oligo. Must correspond with the schema's field definitions. Every field should have its name as a key, mapping to an object with information about the value of the field.\n"
        },
        "folderId": {
          "description": "ID of the folder containing the Oligo.\n",
          "type": "string"
        },
        "name": {
          "description": "Name of the Oligo.\n",
          "type": "string"
        },
        "schemaId": {
          "description": "ID of the oligo's schema.\n",
          "type": "string"
        }
      },
      "type": "object"
    },
    "OligoUpdate": {
      "additionalProperties": false,
      "allOf": [
        {
          "$ref": "#/$defs/OligoBaseRequest"
        }
      ]
    },
    "SequenceFeatureBase": {
      "properties": {
        "color": {
          "description": "Hex color code used when displaying this feature in the UI.",
          "type": "string"
        },
        "customFields": {
          "items": {
            "$ref": "#/$defs/SequenceFeatureCustomField"
          },
          "maxItems": 100,
          "type": "array"
        },
        "name": {
          "maxLength": 2048,
          "type": "string"
        },
        "notes": {
          "maxLength": 10000,
          "type": "string"
        }
      },
      "type": "object"
    },
    "SequenceFeatureCustomField": {
      "description": "A name and value pair associated with a sequence feature (annotation or translation). For genbank imports, these are the qualifiers associated with each feature.",
      "properties": {
        "name": {
          "description": "Name of the custom field",
          "type": "string"
        },
        "value": {
          "description": "Value of the custom field",
          "type": "string"
        }
      },
      "type": "object"
    }
  }
}