openapi: 3.0.1
info:
  license:
    name: Apache 2.0
    url: http://www.apache.org/licenses/LICENSE-2.0.html
  title: Benchling AA Sequences Tasks API
  version: 2.0.0
  description: 'AA Sequences are the working units of cells that make everything run (they help make structures, catalyze reactions and allow for signaling - a kind of internal cell communication). On Benchling, these are comprised of a string of amino acids and collections of other attributes, such as annotations.

    '
servers:
- url: /api/v2
security:
- oAuth: []
- basicApiKeyAuth: []
tags:
- description: '

    Endpoints that perform expensive computations launch long-running tasks. These endpoints return the task ID (a UUID) in the response body.


    After launching a task, periodically invoke the [Get a task](#/Tasks/getTask) endpoint with the task UUID (e.g., every 10 seconds), until the status is no longer RUNNING.


    You can access a task for up to 30 minutes after its completion, after which its data will no longer be available.

    '
  name: Tasks
paths:
  /tasks/{task_id}:
    get:
      description: Get a task by id
      operationId: getTask
      parameters:
      - description: UUID of the task
        example: f438d656-c2c3-40a4-b3fd-d7e58db78242
        in: path
        name: task_id
        required: true
        schema:
          type: string
      responses:
        '200':
          content:
            application/json:
              examples:
                AA Sequences - Bulk Create:
                  $ref: '#/components/examples/BulkOperateAaSequencesTaskResponse'
                AA Sequences - Bulk Update:
                  $ref: '#/components/examples/BulkOperateAaSequencesTaskResponse'
                AA Sequences - Find Matching Region:
                  $ref: '#/components/examples/AaSequencesFindMatchingRegionTaskResponse'
                Audit - Export Audit Log:
                  $ref: '#/components/examples/AuditLogTaskResponse'
                Containers - Bulk Create:
                  $ref: '#/components/examples/BulkOperateContainersTaskResponse'
                Containers - Bulk Update:
                  $ref: '#/components/examples/BulkOperateContainersTaskResponse'
                Containers - Transfers:
                  $ref: '#/components/examples/TransfersTaskResponse'
                Custom Entities - Bulk Create:
                  $ref: '#/components/examples/BulkOperateCustomEntitiesTaskResponse'
                Custom Entities - Bulk Update:
                  $ref: '#/components/examples/BulkOperateCustomEntitiesTaskResponse'
                DNA Alignments - Create Consensus Alignment:
                  $ref: '#/components/examples/DnaCreateAlignmentTaskResponse'
                DNA Alignments - Create Template Alignment:
                  $ref: '#/components/examples/DnaCreateAlignmentTaskResponse'
                DNA Oligos - Bulk Create:
                  $ref: '#/components/examples/BulkOperateDnaOligosTaskResponse'
                DNA Oligos - Bulk Update:
                  $ref: '#/components/examples/BulkOperateDnaOligosTaskResponse'
                DNA Sequences - Auto Annotate:
                  $ref: '#/components/examples/EmptySuccessTaskResponse'
                DNA Sequences - Autofill Parts:
                  $ref: '#/components/examples/EmptySuccessTaskResponse'
                DNA Sequences - Autofill Transcriptions:
                  $ref: '#/components/examples/EmptySuccessTaskResponse'
                DNA Sequences - Autofill Translations:
                  $ref: '#/components/examples/EmptySuccessTaskResponse'
                DNA Sequences - Bulk Create:
                  $ref: '#/components/examples/BulkOperateDnaSequencesTaskResponse'
                DNA Sequences - Bulk Update:
                  $ref: '#/components/examples/BulkOperateDnaSequencesTaskResponse'
                Exports - Export Item:
                  $ref: '#/components/examples/ExportsTaskResponse'
                Features - Bulk Create:
                  $ref: '#/components/examples/BulkOperateFeaturesTaskResponse'
                Lab Automation - Generate Input:
                  $ref: '#/components/examples/AIGGenerateInputTaskResponse'
                Lab Automation - Process Output:
                  $ref: '#/components/examples/AOPProcessOutputTaskResponse'
                RNA Oligos - Bulk Create:
                  $ref: '#/components/examples/BulkOperateRnaOligosTaskResponse'
                RNA Oligos - Bulk Update:
                  $ref: '#/components/examples/BulkOperateRnaOligosTaskResponse'
                RNA Sequences - Auto Annotate:
                  $ref: '#/components/examples/EmptySuccessTaskResponse'
                RNA Sequences - Autofill Parts:
                  $ref: '#/components/examples/EmptySuccessTaskResponse'
                RNA Sequences - Autofill Translations:
                  $ref: '#/components/examples/EmptySuccessTaskResponse'
                RNA Sequences - Bulk Create:
                  $ref: '#/components/examples/BulkOperateRnaSequencesTaskResponse'
                RNA Sequences - Bulk Update:
                  $ref: '#/components/examples/BulkOperateRnaSequencesTaskResponse'
                Registry - Bulk Register Entities:
                  $ref: '#/components/examples/EmptySuccessTaskResponse'
                Task Failed:
                  $ref: '#/components/examples/TaskFailed'
                Task Failed (Bulk):
                  $ref: '#/components/examples/BulkTaskFailed'
                Task Running:
                  $ref: '#/components/examples/TaskRunning'
              schema:
                oneOf:
                - $ref: '#/components/schemas/AsyncTask'
                - $ref: '#/components/schemas/CreateTemplateAlignmentAsyncTask'
                - $ref: '#/components/schemas/CreateConsensusAlignmentAsyncTask'
                - $ref: '#/components/schemas/CreateNucleotideTemplateAlignmentAsyncTask'
                - $ref: '#/components/schemas/CreateNucleotideConsensusAlignmentAsyncTask'
                - $ref: '#/components/schemas/BulkCreateDnaSequencesAsyncTask'
                - $ref: '#/components/schemas/BulkUpdateDnaSequencesAsyncTask'
                - $ref: '#/components/schemas/BulkCreateRnaSequencesAsyncTask'
                - $ref: '#/components/schemas/BulkUpdateRnaSequencesAsyncTask'
                - $ref: '#/components/schemas/AutofillPartsAsyncTask'
                - $ref: '#/components/schemas/AutofillTranscriptionsAsyncTask'
                - $ref: '#/components/schemas/AutofillTranslationsAsyncTask'
                - $ref: '#/components/schemas/BulkRegisterEntitiesAsyncTask'
                - $ref: '#/components/schemas/BulkCreateDnaOligosAsyncTask'
                - $ref: '#/components/schemas/BulkUpdateDnaOligosAsyncTask'
                - $ref: '#/components/schemas/BulkCreateRnaOligosAsyncTask'
                - $ref: '#/components/schemas/BulkCreateAaSequencesAsyncTask'
                - $ref: '#/components/schemas/BulkCreateCustomEntitiesAsyncTask'
                - $ref: '#/components/schemas/BulkUpdateCustomEntitiesAsyncTask'
                - $ref: '#/components/schemas/BulkCreateContainersAsyncTask'
                - $ref: '#/components/schemas/BulkUpdateContainersAsyncTask'
                - $ref: '#/components/schemas/BulkUpdateAaSequencesAsyncTask'
                - $ref: '#/components/schemas/BulkUpdateRnaOligosAsyncTask'
                - $ref: '#/components/schemas/TransfersAsyncTask'
                - $ref: '#/components/schemas/AOPProcessOutputAsyncTask'
                - $ref: '#/components/schemas/AIGGenerateInputAsyncTask'
                - $ref: '#/components/schemas/ExportsAsyncTask'
                - $ref: '#/components/schemas/ExportAuditLogAsyncTask'
                - $ref: '#/components/schemas/BulkCreateFeaturesAsyncTask'
                - $ref: '#/components/schemas/FindMatchingRegionsAsyncTask'
                - $ref: '#/components/schemas/FindMatchingRegionsDnaAsyncTask'
          description: OK
        '404':
          content:
            application/json:
              schema:
                $ref: '#/components/schemas/NotFoundError'
          description: Not Found
      summary: Get a task by id
      tags:
      - Tasks
components:
  schemas:
    Primer:
      properties:
        bases:
          readOnly: true
          type: string
        bindPosition:
          readOnly: true
          type: integer
        color:
          readOnly: true
          type: string
        end:
          description: 0-based exclusive end index. The end of the sequence is always represented as 0.
          type: integer
        name:
          readOnly: true
          type: string
        oligoId:
          type: string
        overhangLength:
          readOnly: true
          type: integer
        start:
          description: 0-based inclusive start index.
          type: integer
        strand:
          example: 1
          type: integer
      type: object
    DeprecatedContainerVolumeForResponse:
      allOf:
      - $ref: '#/components/schemas/ContainerQuantity'
      - description: 'The deprecated "volume" type key in API responses can also contain non-volume quantities for back-compatibility purposes. Use the "quantity" type key instead.

          '
    ExperimentalWellRole:
      properties:
        group:
          type: integer
        primaryRole:
          enum:
          - SAMPLE
          - CONTROL
          - STANDARD
          - BLANK
          type: string
        subrole:
          nullable: true
          type: string
      type: object
    ArchiveRecord:
      properties:
        reason:
          example: Made in error
          type: string
      type: object
    BulkUpdateAaSequencesAsyncTask:
      allOf:
      - $ref: '#/components/schemas/AsyncTask'
      - additionalProperties: false
        properties:
          response:
            properties:
              AaSequences:
                items:
                  $ref: '#/components/schemas/AaSequence'
                type: array
            type: object
        type: object
      type: object
    CreateNucleotideTemplateAlignmentAsyncTask:
      allOf:
      - $ref: '#/components/schemas/AsyncTask'
      - additionalProperties: false
        properties:
          response:
            $ref: '#/components/schemas/NucleotideAlignment'
        type: object
      type: object
    FieldType:
      enum:
      - dna_sequence_link
      - aa_sequence_link
      - custom_entity_link
      - entity_link
      - mixture_link
      - molecule_link
      - dropdown
      - part_link
      - translation_link
      - aa_part_link
      - base_molecule_link
      - blob_link
      - text
      - long_text
      - batch_link
      - storage_link
      - entry_link
      - assay_request_link
      - assay_result_link
      - assay_run_link
      - boolean
      - float
      - integer
      - datetime
      - date
      - json
      type: string
    MixtureWithEntityType:
      allOf:
      - $ref: '#/components/schemas/Mixture'
      - properties:
          entityType:
            enum:
            - mixture
            type: string
        type: object
      type: object
    NucleotideAlignmentSummary:
      properties:
        apiURL:
          description: The canonical url of the Alignment in the API.
          example: https://benchling.com/api/v2/alignments/seqanl_6ZVdX98t
          format: uri
          type: string
        createdAt:
          description: DateTime the Alignment was created
          format: date-time
          type: string
        id:
          example: seqanl_6ZVdX98t
          type: string
        modifiedAt:
          description: DateTime the Alignment was last modified
          format: date-time
          type: string
        name:
          type: string
        referenceSequenceId:
          description: The ID of the template or consensus Sequence associated with the Alignment
          example: seq_MYmsnS1u
          type: string
        webURL:
          description: The Benchling web UI url to view the Alignment
          format: uri
          type: string
      type: object
    ContainerLabels:
      properties:
        barcode:
          example: VIAL001
          type: string
        id:
          example: cnt_12345
          type: string
        name:
          example: My Container
          type: string
      type: object
    AutofillPartsAsyncTask:
      allOf:
      - $ref: '#/components/schemas/AsyncTask'
      - additionalProperties: false
        properties:
          response: {}
        type: object
      type: object
    AaSequenceSummary:
      properties:
        entityType:
          enum:
          - aa_sequence
          type: string
        id:
          example: prtn_ObbdtGhC
          type: string
        type:
          deprecated: true
          type: string
      type: object
    DnaSequenceTranscription:
      properties:
        end:
          description: 0-based exclusive end index. The end of the sequence is always represented as 0.
          type: integer
        sequenceId:
          description: Linked RNA sequence ID.
          example: seq_VfVOART1
          type: string
        start:
          description: 0-based inclusive start index.
          type: integer
        strand:
          example: 1
          maximum: 1
          minimum: -1
          type: integer
      type: object
    FeatureBase:
      properties:
        color:
          description: The color of the annotations generated by the feature. Must be a valid hex string
          example: '#F58A5E'
          type: string
        featureLibraryId:
          description: The id of the feature library the feature belongs to
          example: featlib_19kd9aDq
          type: string
        featureType:
          description: 'The type of feature, like gene, promoter, etc. Note: This is an arbitrary string, not an enum

            '
          nullable: true
          type: string
        name:
          description: The name of the feature
          type: string
        pattern:
          description: The pattern used for matching during auto-annotation.
          type: string
      type: object
    BulkUpdateRnaOligosAsyncTask:
      allOf:
      - $ref: '#/components/schemas/AsyncTask'
      - additionalProperties: false
        properties:
          response:
            properties:
              rnaOligos:
                items:
                  $ref: '#/components/schemas/RnaOligo'
                type: array
            type: object
        type: object
      type: object
    Batch:
      additionalProperties: false
      properties:
        archiveRecord:
          allOf:
          - $ref: '#/components/schemas/ArchiveRecord'
          nullable: true
        createdAt:
          description: DateTime at which the the result was created
          format: date-time
          readOnly: true
          type: string
        creator:
          allOf:
          - $ref: '#/components/schemas/UserSummary'
          readOnly: true
        defaultConcentration:
          $ref: '#/components/schemas/Measurement'
        entity:
          discriminator:
            mapping:
              aa_sequence: '#/components/schemas/AaSequenceSummary'
              custom_entity: '#/components/schemas/CustomEntitySummary'
              dna_sequence: '#/components/schemas/DnaSequenceSummary'
            propertyName: entityType
          oneOf:
          - $ref: '#/components/schemas/DnaSequenceSummary'
          - $ref: '#/components/schemas/AaSequenceSummary'
          - $ref: '#/components/schemas/CustomEntitySummary'
        fields:
          $ref: '#/components/schemas/Fields'
        id:
          example: bat_UOIr8IjL
          readOnly: true
          type: string
        modifiedAt:
          format: date-time
          readOnly: true
          type: string
        name:
          type: string
        schema:
          allOf:
          - $ref: '#/components/schemas/SchemaSummary'
          nullable: true
          readOnly: true
          title: SchemaProperty
        webURL:
          readOnly: true
          type: string
      type: object
    RnaSequenceWithEntityType:
      allOf:
      - $ref: '#/components/schemas/RnaSequence'
      - properties:
          entityType:
            enum:
            - rna_sequence
            type: string
        type: object
      type: object
    BulkCreateRnaSequencesAsyncTask:
      allOf:
      - $ref: '#/components/schemas/AsyncTask'
      - additionalProperties: false
        properties:
          response:
            properties:
              rnaSequences:
                items:
                  $ref: '#/components/schemas/RnaSequence'
                type: array
            type: object
        type: object
      type: object
    NotFoundError:
      properties:
        error:
          allOf:
          - $ref: '#/components/schemas/BaseError'
          - properties:
              invalidId:
                type: string
              type:
                enum:
                - invalid_request_error
                type: string
      type: object
    AutofillTranscriptionsAsyncTask:
      allOf:
      - $ref: '#/components/schemas/AsyncTask'
      - additionalProperties: false
        properties:
          response: {}
        type: object
      type: object
    MixtureMeasurementUnits:
      enum:
      - nL
      - uL
      - mL
      - L
      - g
      - kg
      - mg
      - ug
      - Units
      example: L
      nullable: true
      type: string
    Container:
      properties:
        archiveRecord:
          allOf:
          - $ref: '#/components/schemas/ArchiveRecord'
          nullable: true
          readOnly: true
        barcode:
          nullable: true
          type: string
        checkoutRecord:
          allOf:
          - $ref: '#/components/schemas/CheckoutRecord'
          readOnly: true
        contents:
          items:
            $ref: '#/components/schemas/ContainerContent'
          readOnly: true
          type: array
        createdAt:
          format: date-time
          readOnly: true
          type: string
        creator:
          allOf:
          - $ref: '#/components/schemas/UserSummary'
          readOnly: true
        fields:
          $ref: '#/components/schemas/Fields'
        id:
          example: con_ZBL9QQWD
          readOnly: true
          type: string
        modifiedAt:
          format: date-time
          readOnly: true
          type: string
        name:
          type: string
        parentStorageId:
          nullable: true
          type: string
        parentStorageSchema:
          allOf:
          - $ref: '#/components/schemas/SchemaSummary'
          nullable: true
          readOnly: true
        projectId:
          nullable: true
          type: string
        quantity:
          $ref: '#/components/schemas/ContainerQuantity'
        restrictedSampleParties:
          items:
            anyOf:
            - $ref: '#/components/schemas/UserSummary'
            - $ref: '#/components/schemas/TeamSummary'
          type: array
        restrictionStatus:
          allOf:
          - $ref: '#/components/schemas/SampleRestrictionStatus'
        role:
          allOf:
          - $ref: '#/components/schemas/ExperimentalWellRole'
          nullable: true
        sampleOwners:
          items:
            anyOf:
            - $ref: '#/components/schemas/UserSummary'
            - $ref: '#/components/schemas/TeamSummary'
          type: array
        schema:
          allOf:
          - $ref: '#/components/schemas/SchemaSummary'
          nullable: true
          readOnly: true
        volume:
          $ref: '#/components/schemas/DeprecatedContainerVolumeForResponse'
        webURL:
          readOnly: true
          type: string
      type: object
    BulkUpdateCustomEntitiesAsyncTask:
      allOf:
      - $ref: '#/components/schemas/AsyncTask'
      - additionalProperties: false
        properties:
          response:
            properties:
              customEntities:
                items:
                  $ref: '#/components/schemas/CustomEntity'
                type: array
            type: object
        type: object
      type: object
    AaSequence:
      properties:
        aliases:
          description: Array of aliases
          items:
            type: string
          type: array
        aminoAcids:
          description: Amino acids of the AA sequence.
          example: IKTATARRELAETSWTGDRLWGFSDNWAPALRRPSPSALGK
          type: string
        annotations:
          description: Array of annotation objects on the AA sequence.
          items:
            $ref: '#/components/schemas/AaAnnotation'
          type: array
        apiURL:
          description: The canonical url of the AA Sequence in the API.
          example: https://benchling.com/api/v2/aa-sequences/prtn_7nMBOMm0
          format: uri
          readOnly: true
          type: string
        archiveRecord:
          allOf:
          - $ref: '#/components/schemas/ArchiveRecord'
          nullable: true
        authors:
          items:
            $ref: '#/components/schemas/UserSummary'
          type: array
        createdAt:
          description: DateTime the AA sequence was created.
          format: date-time
          readOnly: true
          type: string
        creator:
          $ref: '#/components/schemas/UserSummary'
        customFields:
          allOf:
          - $ref: '#/components/schemas/CustomFields'
          description: Custom fields set on the AA sequence.
        entityRegistryId:
          description: Registry ID of the AA sequence if registered.
          nullable: true
          type: string
        fields:
          $ref: '#/components/schemas/Fields'
        folderId:
          description: ID of the folder that contains the AA sequence.
          nullable: true
          type: string
        id:
          description: ID of the AA sequence.
          example: prtn_ObbdtGhC
          type: string
        length:
          description: Number of amino acids in the AA sequence.
          type: integer
        modifiedAt:
          description: DateTime the AA sequence was last modified.
          format: date-time
          readOnly: true
          type: string
        name:
          description: Name of the AA sequence.
          type: string
        registrationOrigin:
          allOf:
          - $ref: '#/components/schemas/RegistrationOrigin'
          nullable: true
          readOnly: true
        registryId:
          description: Registry the AA sequence is registered in.
          nullable: true
          type: string
        schema:
          allOf:
          - $ref: '#/components/schemas/SchemaSummary'
          nullable: true
        url:
          description: The path of the web URL, omitting the tenant domain
          type: string
        webURL:
          description: URL of the AA sequence.
          example: https://benchling.com/benchling/f/lib_55UxcIps-registry/prtn_7nMBOMm0-kedchain11/edit"
          format: uri
          readOnly: true
          type: string
      type: object
    CustomEntity:
      properties:
        aliases:
          items:
            example: sBN000
            type: string
          type: array
        apiURL:
          description: The canonical url of the Custom Entity in the API.
          example: https://benchling.com/api/v2/custom-entities/bfi_xCUXNVyG
          format: uri
          readOnly: true
          type: string
        archiveRecord:
          allOf:
          - $ref: '#/components/schemas/ArchiveRecord'
          nullable: true
        authors:
          items:
            $ref: '#/components/schemas/UserSummary'
          type: array
        createdAt:
          example: '2017-04-18T05:54:56.247545+00:00'
          format: date-time
          readOnly: true
          type: string
        creator:
          allOf:
          - $ref: '#/components/schemas/UserSummary'
          - readOnly: true
        customFields:
          $ref: '#/components/schemas/CustomFields'
        entityRegistryId:
          example: sBN000
          nullable: true
          type: string
        fields:
          $ref: '#/components/schemas/Fields'
        folderId:
          example: lib_R8KcsjhW
          nullable: true
          type: string
        id:
          example: bfi_xCUXNVyG
          type: string
        modifiedAt:
          example: '2017-04-18T05:55:48.685345+00:00'
          format: date-time
          readOnly: true
          type: string
        name:
          example: sBN000
          type: string
        registrationOrigin:
          allOf:
          - $ref: '#/components/schemas/RegistrationOrigin'
          nullable: true
          readOnly: true
        registryId:
          example: src_NetYd96a
          nullable: true
          type: string
        schema:
          allOf:
          - $ref: '#/components/schemas/SchemaSummary'
          example:
            id: ts_EM122lfJ
            name: Strain
          nullable: true
        url:
          description: The path of the web URL, omitting the tenant domain
          type: string
        webURL:
          example: https://benchling.com/benchling/f/R8KcsjhW-academic-registry/bfi-xCUXNVyG-sbn000/edit
          readOnly: true
          type: string
      type: object
    RnaOligoWithEntityType:
      allOf:
      - $ref: '#/components/schemas/RnaOligo'
      - properties:
          entityType:
            enum:
            - rna_oligo
            type: string
        type: object
      type: object
    TeamSummary:
      allOf:
      - type: object
      - properties:
          id:
            type: string
          name:
            type: string
      - example:
          id: team_5cjIguqc
          name: Elion's Team
    AaSequenceWithEntityType:
      allOf:
      - $ref: '#/components/schemas/AaSequence'
      - properties:
          entityType:
            enum:
            - aa_sequence
            type: string
        type: object
      type: object
    Blob:
      properties:
        id:
          description: The universally unique identifier (UUID) for the blob.
          example: c33fe52d-fe6a-4c98-adcd-211bdf6778f7
          format: uuid
          type: string
        mimeType:
          description: eg. application/jpeg
          example: text/csv
          maxLength: 100
          type: string
        name:
          description: Name of the blob
          example: MyInstrumentInputFile.csv
          maxLength: 1000
          type: string
        type:
          description: 'One of RAW_FILE or VISUALIZATION. If VISUALIZATION, the blob may be displayed as an image preview.

            '
          enum:
          - RAW_FILE
          - VISUALIZATION
          type: string
        uploadStatus:
          enum:
          - IN_PROGRESS
          - COMPLETE
          - ABORTED
          type: string
      type: object
    RnaSequencePart:
      allOf:
      - $ref: '#/components/schemas/NucleotideSequencePart'
      - properties:
          strand:
            example: 1
            maximum: 1
            minimum: 1
            type: integer
        type: object
    CustomEntityWithEntityType:
      allOf:
      - $ref: '#/components/schemas/CustomEntity'
      - properties:
          entityType:
            enum:
            - custom_entity
            type: string
        type: object
      type: object
    CustomField:
      properties:
        value:
          type: string
      type: object
    AutomationOutputProcessor:
      allOf:
      - $ref: '#/components/schemas/AutomationFile'
      - properties:
          apiURL:
            description: The canonical url of the Automation Output Processor in the API.
            example: https://benchling.com/api/v2/automation-output-processors/aop_C3wGA9HF
            format: uri
            readOnly: true
            type: string
          archiveRecord:
            allOf:
            - $ref: '#/components/schemas/ArchiveRecord'
            nullable: true
          completeWithErrors:
            description: Specifies whether file processing should complete with errors. False means any error in output file processing will result in no actions being committed. True means that if row-level errors occur, then failing rows and their errors will be saved to errorFile, and actions from successful rows will be committed.
            type: boolean
          createdAt:
            description: DateTime the Automation Output Processor was created
            format: date-time
            type: string
          errorFile:
            allOf:
            - $ref: '#/components/schemas/Blob'
            nullable: true
          id:
            example: aop_C3wGA9HF
            type: string
          modifiedAt:
            description: DateTime the Automation Output Processor was last modified
            format: date-time
            type: string
          progressStats:
            $ref: '#/components/schemas/AutomationProgressStats'
          transforms:
            items:
              allOf:
              - $ref: '#/components/schemas/LabAutomationTransform'
              nullable: true
            type: array
        type: object
    EntityOrInaccessibleResource:
      oneOf:
      - $ref: '#/components/schemas/Entity'
      - $ref: '#/components/schemas/InaccessibleResource'
      type: object
    SequenceFeatureCustomField:
      description: A name and value pair associated with a sequence feature (annotation or translation). For genbank imports, these are the qualifiers associated with each feature.
      properties:
        name:
          description: Name of the custom field
          type: string
        value:
          description: Value of the custom field
          type: string
      type: object
    Entity:
      discriminator:
        mapping:
          aa_sequence: '#/components/schemas/AaSequenceWithEntityType'
          custom_entity: '#/components/schemas/CustomEntityWithEntityType'
          dna_oligo: '#/components/schemas/DnaOligoWithEntityType'
          dna_sequence: '#/components/schemas/DnaSequenceWithEntityType'
          mixture: '#/components/schemas/MixtureWithEntityType'
          molecule: '#/components/schemas/MoleculeWithEntityType'
          rna_oligo: '#/components/schemas/RnaOligoWithEntityType'
          rna_sequence: '#/components/schemas/RnaSequenceWithEntityType'
        propertyName: entityType
      oneOf:
      - $ref: '#/components/schemas/DnaSequenceWithEntityType'
      - $ref: '#/components/schemas/RnaSequenceWithEntityType'
      - $ref: '#/components/schemas/AaSequenceWithEntityType'
      - $ref: '#/components/schemas/MixtureWithEntityType'
      - $ref: '#/components/schemas/DnaOligoWithEntityType'
      - $ref: '#/components/schemas/RnaOligoWithEntityType'
      - $ref: '#/components/schemas/MoleculeWithEntityType'
      - $ref: '#/components/schemas/CustomEntityWithEntityType'
      type: object
    AaAnnotation:
      properties:
        color:
          type: string
        end:
          description: 0-based exclusive end index. The end of the AA sequence is always represented as 0.
          type: integer
        id:
          example: prtnann_o7zMPG0P
          type: string
        name:
          maxLength: 255
          type: string
        notes:
          example: Cong et al Science. 2013 Jan 3.
          maxLength: 10000
          type: string
        start:
          description: 0-based inclusive start index.
          type: integer
        type:
          example: Site
          maxLength: 255
          type: string
      type: object
    SampleRestrictionStatus:
      enum:
      - RESTRICTED
      - UNRESTRICTED
      - NOT_APPLICABLE
      type: string
    SequenceFeatureBase:
      properties:
        color:
          description: Hex color code used when displaying this feature in the UI.
          example: '#F58A5E'
          type: string
        customFields:
          items:
            $ref: '#/components/schemas/SequenceFeatureCustomField'
          maxItems: 100
          type: array
        name:
          maxLength: 2048
          type: string
        notes:
          example: Cong et al Science. 2013 Jan 3.
          maxLength: 10000
          type: string
      type: object
    IngredientMeasurementUnits:
      enum:
      - nL
      - uL
      - mL
      - L
      - mg
      - g
      - kg
      - ug
      - Units
      - Cells
      - mol
      - mmol
      - umol
      example: mL
      nullable: true
      type: string
    AOPProcessOutputAsyncTask:
      allOf:
      - $ref: '#/components/schemas/AsyncTask'
      - additionalProperties: false
        properties:
          response:
            $ref: '#/components/schemas/AutomationOutputProcessor'
        type: object
      type: object
    CreateTemplateAlignmentAsyncTask:
      allOf:
      - $ref: '#/components/schemas/AsyncTask'
      - additionalProperties: false
        properties:
          response:
            $ref: '#/components/schemas/DnaAlignment'
        type: object
      type: object
    BulkCreateFeaturesAsyncTask:
      allOf:
      - $ref: '#/components/schemas/AsyncTask'
      - additionalProperties: false
        properties:
          response:
            properties:
              features:
                items:
                  $ref: '#/components/schemas/Feature'
                type: array
            type: object
        type: object
      type: object
    CustomEntitySummary:
      properties:
        entityType:
          enum:
          - custom_entity
          type: string
        id:
          example: bfi_xCUXNVyG
          type: string
        type:
          deprecated: true
          type: string
      type: object
    Feature:
      allOf:
      - $ref: '#/components/schemas/FeatureBase'
      - properties:
          id:
            description: The id of the feature
            example: feat_4YVqX98z
            type: string
          matchType:
            description: The match type of the feature. Used to determine how auto-annotate matches are made.
            enum:
            - nucleotide
            - protein
            type: string
      description: A feature from a feature library
      type: object
    BulkRegisterEntitiesAsyncTask:
      allOf:
      - $ref: '#/components/schemas/AsyncTask'
      - additionalProperties: false
        properties:
          response: {}
        type: object
      type: object
    RnaSequence:
      properties:
        aliases:
          items:
            type: string
          type: array
        alignmentIds:
          description: API IDs of Nucleotide Alignments involving the RNA sequence
          items:
            type: string
          type: array
        annotations:
          items:
            $ref: '#/components/schemas/RnaAnnotation'
          type: array
        apiURL:
          description: The canonical url of the RNA Sequence in the API.
          example: https://benchling.com/api/v2/rna-sequences/seq_asZya4lk
          format: uri
          readOnly: true
          type: string
        archiveRecord:
          allOf:
          - $ref: '#/components/schemas/ArchiveRecord'
          nullable: true
        authors:
          items:
            $ref: '#/components/schemas/UserSummary'
          type: array
        bases:
          type: string
        createdAt:
          format: date-time
          readOnly: true
          type: string
        creator:
          $ref: '#/components/schemas/UserSummary'
        customFields:
          $ref: '#/components/schemas/CustomFields'
        customNotation:
          description: Representation of the RNA Sequence in the custom notation specified in the request. Null if no notation was specified.
          nullable: true
          type: string
        customNotationName:
          description: Name of the custom notation specified in the request. Null if no notation was specified.
          nullable: true
          type: string
        entityRegistryId:
          nullable: true
          type: string
        fields:
          $ref: '#/components/schemas/Fields'
        folderId:
          nullable: true
          type: string
        helm:
          description: Representation of the RNA Sequence in HELM syntax, including any chemical modifications.
          example: RNA1{r(A)p.r(C)[Ssp].r(U)p.r(U)p.r(U)p.r(U)p.r(U)p}$$$$V2.0
          nullable: true
          type: string
        id:
          type: string
        isCircular:
          example: false
          type: boolean
        length:
          type: integer
        modifiedAt:
          format: date-time
          readOnly: true
          type: string
        name:
          type: string
        parts:
          items:
            $ref: '#/components/schemas/RnaSequencePart'
          type: array
        primers:
          items:
            $ref: '#/components/schemas/Primer'
          type: array
        registrationOrigin:
          allOf:
          - $ref: '#/components/schemas/RegistrationOrigin'
          nullable: true
          readOnly: true
        registryId:
          nullable: true
          type: string
        schema:
          allOf:
          - $ref: '#/components/schemas/SchemaSummary'
          nullable: true
        translations:
          items:
            $ref: '#/components/schemas/Translation'
          type: array
        url:
          description: The path of the web URL, omitting the tenant domain
          type: string
        webURL:
          readOnly: true
          type: string
      type: object
    RnaAnnotation:
      allOf:
      - $ref: '#/components/schemas/SequenceFeatureBase'
      - properties:
          end:
            description: 0-based exclusive end index. The end of the sequence is always represented as 0.
            type: integer
          start:
            description: 0-based inclusive start index.
            type: integer
          strand:
            example: 1
            maximum: 1
            minimum: 0
            type: integer
          type:
            type: string
        type: object
    ContainerContent:
      properties:
        batch:
          allOf:
          - $ref: '#/components/schemas/BatchOrInaccessibleResource'
          nullable: true
        concentration:
          $ref: '#/components/schemas/Measurement'
        entity:
          allOf:
          - $ref: '#/components/schemas/EntityOrInaccessibleResource'
          nullable: true
      type: object
    DnaSequence:
      properties:
        aliases:
          items:
            type: string
          type: array
        annotations:
          items:
            $ref: '#/components/schemas/DnaAnnotation'
          type: array
        apiURL:
          description: The canonical url of the DNA Sequence in the API.
          example: https://benchling.com/api/v2/dna-sequences/seq_asQya4lk
          format: uri
          readOnly: true
          type: string
        archiveRecord:
          allOf:
          - $ref: '#/components/schemas/ArchiveRecord'
          nullable: true
        authors:
          items:
            $ref: '#/components/schemas/UserSummary'
          type: array
        bases:
          type: string
        createdAt:
          format: date-time
          readOnly: true
          type: string
        creator:
          $ref: '#/components/schemas/UserSummary'
        customFields:
          $ref: '#/components/schemas/CustomFields'
        dnaAlignmentIds:
          description: API IDs of Nucleotide Alignments involving the RNA sequence
          items:
            type: string
          type: array
        entityRegistryId:
          nullable: true
          type: string
        fields:
          $ref: '#/components/schemas/Fields'
        folderId:
          nullable: true
          type: string
        id:
          type: string
        isCircular:
          type: boolean
        length:
          type: integer
        modifiedAt:
          format: date-time
          readOnly: true
          type: string
        name:
          type: string
        parts:
          items:
            $ref: '#/components/schemas/DnaSequencePart'
          type: array
        primers:
          items:
            $ref: '#/components/schemas/Primer'
          type: array
        registrationOrigin:
          allOf:
          - $ref: '#/components/schemas/RegistrationOrigin'
          nullable: true
          readOnly: true
        registryId:
          nullable: true
          type: string
        schema:
          allOf:
          - $ref: '#/components/schemas/SchemaSummary'
          nullable: true
        transcriptions:
          items:
            $ref: '#/components/schemas/DnaSequenceTranscription'
          type: array
        translations:
          items:
            $ref: '#/components/schemas/Translation'
          type: array
        url:
          description: The path of the web URL, omitting the tenant domain
          type: string
        webURL:
          readOnly: true
          type: string
      type: object
    AlignedSequence:
      properties:
        bases:
          example: GTAGCAAAGANTAGTAGCCAGCTGTGATAAATGTCAGCTAAAAGGGGAAGCCATG
          type: string
        dnaSequenceId:
          deprecated: true
          example: seq_MYmsnS1u
          nullable: true
          type: string
        name:
          example: Gene001
          type: string
        pairwiseIdentity:
          description: 'Fraction of bases between trimStart and trimEnd that match the template bases. Only present for Template Alignments; Will be empty for Consensus Alignments.

            '
          example: 0.505
          format: float
          type: number
        sequenceId:
          example: seq_MYmsnS1u
          nullable: true
          type: string
        trimEnd:
          example: 60
          type: integer
        trimStart:
          example: 0
          type: integer
      type: object
    SchemaSummary:
      properties:
        id:
          type: string
        name:
          type: string
      type: object
    Molecule:
      additionalProperties: false
      properties:
        aliases:
          description: Array of aliases.
          items:
            type: string
          type: array
        apiURL:
          description: The canonical url of the Molecule in the API.
          format: uri
          readOnly: true
          type: string
        archiveRecord:
          allOf:
          - $ref: '#/components/schemas/ArchiveRecord'
          nullable: true
        authors:
          items:
            $ref: '#/components/schemas/UserSummary'
          type: array
        canonicalizedSmiles:
          description: The canonicalized chemical structure in SMILES format.
          example: Nc1nc(=O)n([H])cc1C1CC1
          type: string
        createdAt:
          description: DateTime the Molecule was created.
          format: date-time
          readOnly: true
          type: string
        creator:
          $ref: '#/components/schemas/UserSummary'
        customFields:
          allOf:
          - $ref: '#/components/schemas/CustomFields'
          description: Custom fields set on the Molecule.
        entityRegistryId:
          description: Registry ID of the Molecule if registered.
          nullable: true
          type: string
        fields:
          $ref: '#/components/schemas/Fields'
        folderId:
          description: ID of the folder that contains the Molecule.
          nullable: true
          type: string
        id:
          description: ID of the Molecule.
          example: mol_bhuDUw9D
          type: string
        modifiedAt:
          description: DateTime the Molecule was last modified.
          format: date-time
          readOnly: true
          type: string
        name:
          description: Name of the Molecule.
          type: string
        originalSmiles:
          description: The original chemical structure supplied by the user in SMILES format. Null if the user did not originally supply SMILES.
          example: Nc1nc(=O)n([H])cc1C1CC1
          nullable: true
          type: string
        registrationOrigin:
          allOf:
          - $ref: '#/components/schemas/RegistrationOrigin'
          nullable: true
          readOnly: true
        registryId:
          description: Registry the Molecule is registered in.
          nullable: true
          type: string
        schema:
          allOf:
          - $ref: '#/components/schemas/SchemaSummary'
          nullable: true
        webURL:
          description: URL of the Molecule.
          example: https://benchling.com/benchling/f/lib_R8KcsjhW-molecules/mol_xCUXNVyG-molecule1/edit
          format: uri
          readOnly: true
          type: string
      type: object
    BulkCreateAaSequencesAsyncTask:
      allOf:
      - $ref: '#/components/schemas/AsyncTask'
      - additionalProperties: false
        properties:
          response:
            properties:
              aaSequences:
                items:
                  $ref: '#/components/schemas/AaSequence'
                type: array
            type: object
        type: object
      type: object
    DnaSequenceWithEntityType:
      allOf:
      - $ref: '#/components/schemas/DnaSequence'
      - properties:
          entityType:
            enum:
            - dna_sequence
            type: string
        type: object
      type: object
    ContainerQuantity:
      description: Quantity of a container, well, or transfer. Supports mass, volume, and other quantities.
      properties:
        units:
          enum:
          - L
          - mL
          - uL
          - nL
          - pL
          - gal (US)
          - qt (US)
          - pt (US)
          - kg
          - g
          - mg
          - ug
          - ng
          - pg
          - lb
          - oz
          - mol
          - mmol
          - umol
          - nmol
          - pmol
          - cells
          - (x10^3) cells
          - (x10^4) cells
          - (x10^5) cells
          - (x10^6) cells
          - (x10^7) cells
          - (x10^8) cells
          - (x10^9) cells
          - items
          - units
          - null
          example: mL
          nullable: true
          type: string
        value:
          example: 10
          nullable: true
          type: number
      type: object
    Fields:
      additionalProperties:
        $ref: '#/components/schemas/Field'
      type: object
    BulkCreateDnaSequencesAsyncTask:
      allOf:
      - $ref: '#/components/schemas/AsyncTask'
      - additionalProperties: false
        properties:
          response:
            properties:
              dnaSequences:
                items:
                  $ref: '#/components/schemas/DnaSequence'
                type: array
            type: object
        type: object
      type: object
    NucleotideAlignment:
      allOf:
      - $ref: '#/components/schemas/NucleotideAlignmentSummary'
      - properties:
          alignedSequences:
            items:
              $ref: '#/components/schemas/AlignedNucleotideSequence'
            type: array
        type: object
      type: object
    BulkCreateRnaOligosAsyncTask:
      allOf:
      - $ref: '#/components/schemas/AsyncTask'
      - additionalProperties: false
        properties:
          response:
            properties:
              rnaOligos:
                items:
                  $ref: '#/components/schemas/RnaOligo'
                type: array
            type: object
        type: object
      type: object
    Measurement:
      properties:
        units:
          description: Can only be null if value is also null
          nullable: true
          type: string
        value:
          description: Can only be null if units is also null
          nullable: true
          type: number
      required:
      - value
      - units
      type: object
    NucleotideSequencePart:
      properties:
        end:
          description: 0-based exclusive end index. The end of the sequence is always represented as 0.
          type: integer
        sequenceId:
          example: seq_VfVOART1
          type: string
        start:
          description: 0-based inclusive start index.
          type: integer
      type: object
    DnaOligoWithEntityType:
      allOf:
      - $ref: '#/components/schemas/DnaOligo'
      - properties:
          entityType:
            enum:
            - dna_oligo
            type: string
        type: object
      type: object
    ExportsAsyncTask:
      allOf:
      - $ref: '#/components/schemas/AsyncTask'
      - additionalProperties: false
        properties:
          response:
            additionalProperties: false
            properties:
              downloadURL:
                format: uri
                type: string
            type: object
        type: object
      type: object
    BaseError:
      properties:
        message:
          type: string
        type:
          type: string
        userMessage:
          type: string
      type: object
    RnaOligo:
      allOf:
      - $ref: '#/components/schemas/Oligo'
      - properties:
          annotations:
            description: Annotations on the Oligo.
            items:
              $ref: '#/components/schemas/RnaAnnotation'
            type: array
          apiURL:
            example: https://benchling.com/api/v2/rna-oligos/seq_bhuDUw9D
            type: string
          bases:
            example: ACUUUUU
            type: string
          customNotation:
            description: Representation of the oligo in the custom notation specified in the request. Null if no notation was specified.
            nullable: true
            type: string
          customNotationName:
            description: Name of the custom notation specified in the request. Null if no notation was specified.
            nullable: true
            type: string
          helm:
            description: Representation of the oligo in HELM syntax, including any chemical modifications
            example: RNA1{r(A)p.r(C)[Ssp].r(U)p.r(U)p.r(U)p.r(U)p.r(U)p}$$$$V2.0
            type: string
          nucleotideType:
            example: RNA
            type: string
    FindMatchingRegionsAsyncTask:
      allOf:
      - $ref: '#/components/schemas/AsyncTask'
      - additionalProperties: false
        properties:
          response:
            properties:
              aaSequenceMatches:
                items:
                  properties:
                    matchingAASequenceIds:
                      items:
                        type: string
                      type: array
                    targetAASequenceId:
                      type: string
                  type: object
                type: array
            type: object
        type: object
      type: object
    BulkCreateContainersAsyncTask:
      allOf:
      - $ref: '#/components/schemas/AsyncTask'
      - additionalProperties: false
        properties:
          response:
            properties:
              containers:
                items:
                  $ref: '#/components/schemas/Container'
                type: array
            type: object
        type: object
      type: object
    AIGGenerateInputAsyncTask:
      allOf:
      - $ref: '#/components/schemas/AsyncTask'
      - additionalProperties: false
        properties:
          response:
            $ref: '#/components/schemas/AutomationInputGenerator'
        type: object
      type: object
    MoleculeWithEntityType:
      allOf:
      - $ref: '#/components/schemas/Molecule'
      - properties:
          entityType:
            enum:
            - molecule
            type: string
        type: object
      type: object
    PartySummary:
      properties:
        handle:
          type: string
        id:
          type: string
        name:
          type: string
      type: object
    DnaSequencePart:
      allOf:
      - $ref: '#/components/schemas/NucleotideSequencePart'
      - properties:
          strand:
            example: 1
            maximum: 1
            minimum: -1
            type: integer
        type: object
    CheckoutRecord:
      description: '

        *assignee field* is set if status is "RESERVED" or "CHECKED_OUT", or null if status is "AVAILABLE".


        *comment field* is set when container was last reserved, checked out, or checked into.


        *modifiedAt field* is the date and time when container was last checked out, checked in, or reserved

        '
      properties:
        assignee:
          nullable: true
          oneOf:
          - $ref: '#/components/schemas/UserSummary'
          - $ref: '#/components/schemas/TeamSummary'
        comment:
          type: string
        modifiedAt:
          format: date-time
          type: string
        status:
          enum:
          - AVAILABLE
          - RESERVED
          - CHECKED_OUT
          type: string
      type: object
    CustomFields:
      additionalProperties:
        $ref: '#/components/schemas/CustomField'
      example:
        Legacy ID:
          value: STR100
      type: object
    AlignedNucleotideSequence:
      properties:
        bases:
          example: GTAGCAAAGANTAGTAGCCAGCTGTGATAAATGTCAGCTAAAAGGGGAAGCCATG
          type: string
        dnaSequenceId:
          deprecated: true
          example: seq_MYmsnS1u
          nullable: true
          type: string
        name:
          example: Gene001
          type: string
        pairwiseIdentity:
          description: 'Fraction of bases between trimStart and trimEnd that match the template bases. Only present for Template Alignments; Will be empty for Consensus Alignments.

            '
          example: 0.505
          format: float
          type: number
        sequenceId:
          example: seq_MYmsnS1u
          nullable: true
          type: string
        trimEnd:
          example: 60
          type: integer
        trimStart:
          example: 0
          type: integer
      type: object
    AutomationFile:
      properties:
        assayRunId:
          example: 588aca02-1a20-4b94-a40f-b3f3a0081749
          type: string
        automationFileConfig:
          properties:
            name:
              example: MyInstrumentName
              type: string
          type: object
        file:
          allOf:
          - $ref: '#/components/schemas/Blob'
          nullable: true
        id:
          type: string
        status:
          enum:
          - SUCCEEDED
          - FAILED
          - NOT_STARTED
          - RUNNING
          type: string
      type: object
    AutomationInputGenerator:
      allOf:
      - $ref: '#/components/schemas/AutomationFile'
      - properties:
          apiURL:
            description: The canonical url of the Automation Input Generator in the API.
            example: https://benchling.com/api/v2/automation-input-generators/aif_C3wGA9HF
            format: uri
            readOnly: true
            type: string
          createdAt:
            description: DateTime the Automation Input Generator was last modified
            format: date-time
            readOnly: true
            type: string
          id:
            example: aif_C3wGA9HF
            type: string
          modifiedAt:
            description: DateTime the Automation Input Generator was last modified
            format: date-time
            readOnly: true
            type: string
          transforms:
            items:
              allOf:
              - $ref: '#/components/schemas/LabAutomationTransform'
              nullable: true
            type: array
        type: object
    InaccessibleResource:
      additionalProperties: false
      properties:
        inaccessibleId:
          type: string
        resourceType:
          enum:
          - inaccessible_resource
          type: string
        type:
          description: 'The type of this inaccessible item. Example values: "custom_entity", "container", "plate", "dna_sequence"

            '
          example: custom_entity
          type: string
      type: object
    EntityLabels:
      properties:
        entityRegistryId:
          example: REAG000
          nullable: true
          type: string
        id:
          example: bfi_12345
          type: string
        name:
          example: Deionized Water
          type: string
      type: object
    LabAutomationTransform:
      properties:
        apiURL:
          description: The canonical url of the transform in the API.
          format: uri
          readOnly: true
          type: string
        blobId:
          format: uuid
          nullable: true
          type: string
        customTransformId:
          format: uuid
          nullable: true
          type: string
        errors:
          $ref: '#/components/schemas/LabAutomationBenchlingAppErrors'
        id:
          type: string
        inputGeneratorId:
          nullable: true
          type: string
        modifiedAt:
          description: DateTime the transform was last modified.
          format: date-time
          readOnly: true
          type: string
        outputProcessorId:
          nullable: true
          type: string
        status:
          enum:
          - NOT_STARTED
          - RUNNING
          - FAILED
          - SUCCEEDED
          type: string
      type: object
    BulkUpdateDnaSequencesAsyncTask:
      allOf:
      - $ref: '#/components/schemas/AsyncTask'
      - additionalProperties: false
        properties:
          response:
            properties:
              dnaSequences:
                items:
                  $ref: '#/components/schemas/DnaSequence'
                type: array
            type: object
        type: object
      type: object
    FindMatchingRegionsDnaAsyncTask:
      allOf:
      - $ref: '#/components/schemas/AsyncTask'
      - additionalProperties: false
        properties:
          response:
            properties:
              dnaSequenceMatches:
                items:
                  properties:
                    matchingDnaSequenceIds:
                      items:
                        type: string
                      type: array
                    targetDnaSequenceId:
                      type: string
                  type: object
                type: array
            type: object
        type: object
      type: object
    CreateNucleotideConsensusAlignmentAsyncTask:
      allOf:
      - $ref: '#/components/schemas/AsyncTask'
      - additionalProperties: false
        properties:
          response:
            $ref: '#/components/schemas/NucleotideAlignment'
        type: object
      type: object
    BulkCreateDnaOligosAsyncTask:
      allOf:
      - $ref: '#/components/schemas/AsyncTask'
      - additionalProperties: false
        properties:
          response:
            properties:
              dnaOligos:
                items:
                  $ref: '#/components/schemas/DnaOligo'
                type: array
            type: object
        type: object
      type: object
    AutofillTranslationsAsyncTask:
      allOf:
      - $ref: '#/components/schemas/AsyncTask'
      - additionalProperties: false
        properties:
          response: {}
        type: object
      type: object
    DnaAnnotation:
      allOf:
      - $ref: '#/components/schemas/SequenceFeatureBase'
      - properties:
          end:
            description: 0-based exclusive end index. The end of the sequence is always represented as 0.
            type: integer
          start:
            description: 0-based inclusive start index.
            type: integer
          strand:
            maximum: 1
            minimum: -1
            type: integer
          type:
            type: string
        type: object
    DnaOligo:
      allOf:
      - $ref: '#/components/schemas/Oligo'
      - properties:
          annotations:
            description: Annotations on the Oligo.
            items:
              $ref: '#/components/schemas/DnaAnnotation'
            type: array
          apiURL:
            example: https://benchling.com/api/v2/dna-oligos/seq_bhuDUw9D
            type: string
          bases:
            example: ACTTTTT
            type: string
          customNotation:
            description: Representation of the oligo in the custom notation specified in the request. Null if no notation was specified.
            nullable: true
            type: string
          customNotationName:
            description: Name of the custom notation specified in the request. Null if no notation was specified.
            nullable: true
            type: string
          helm:
            description: Representation of the oligo in HELM syntax, including any chemical modifications
            example: RNA1{d(A)p.d(C)[Ssp].d(T)p.d(T)p.d(T)p.d(T)p.d(T)p}$$$$V2.0
            type: string
    DnaAlignmentSummary:
      properties:
        apiURL:
          description: The canonical url of the DNA Alignment in the API.
          example: https://benchling.com/api/v2/dna-alignments/seqanl_6ZVdX98t
          format: uri
          type: string
        createdAt:
          description: DateTime the DNA Alignment was created
          format: date-time
          type: string
        id:
          example: seqanl_6ZVdX98t
          type: string
        modifiedAt:
          description: DateTime the DNA Alignment was last modified
          format: date-time
          type: string
        name:
          type: string
        referenceSequenceId:
          description: The ID of the template or consensus DNA Sequence associated with the DNA Alignment
          example: seq_MYmsnS1u
          type: string
        webURL:
          description: The Benchling web UI url to view the DNA Alignment
          format: uri
          type: string
      type: object
    TransfersAsyncTask:
      allOf:
      - $ref: '#/components/schemas/AsyncTask'
      - additionalProperties: false
        properties:
          response:
            properties:
              destinationContainers:
                items:
                  $ref: '#/components/schemas/Container'
                type: array
            type: object
        type: object
      type: object
    UserSummary:
      allOf:
      - $ref: '#/components/schemas/PartySummary'
      - example:
          handle: lpasteur
          id: ent_a0SApq3z
          name: Louis Pasteur
    Mixture:
      properties:
        aliases:
          items:
            example: FRM000
            type: string
          type: array
        allowMeasuredIngredients:
          description: Derived from the mixture's schema.
          readOnly: true
          type: boolean
        amount:
          description: The positive numerical amount value of this mixture in string format (to preserve full precision). Pair with `units`. Supports scientific notation (1.23e4).
          example: '123'
          type: string
        apiURL:
          description: The canonical url of the Mixture in the API.
          example: https://benchling.com/api/v2/mixtures/mxt_xCUXNVyG
          format: uri
          readOnly: true
          type: string
        archiveRecord:
          allOf:
          - $ref: '#/components/schemas/ArchiveRecord'
          nullable: true
        authors:
          items:
            $ref: '#/components/schemas/UserSummary'
          type: array
        createdAt:
          example: '2017-04-18T05:54:56.247545+00:00'
          format: date-time
          readOnly: true
          type: string
        creator:
          allOf:
          - $ref: '#/components/schemas/UserSummary'
          - readOnly: true
        customFields:
          $ref: '#/components/schemas/CustomFields'
        entityRegistryId:
          example: FRM000
          nullable: true
          type: string
        fields:
          allOf:
          - $ref: '#/components/schemas/Fields'
          description: Mixtures can have up to one parent mixture field.
        folderId:
          example: lib_R8KcsjhW
          nullable: true
          type: string
        id:
          example: mxt_xCUXNVyG
          type: string
        ingredients:
          description: List of ingredients on this mixture.
          items:
            $ref: '#/components/schemas/Ingredient'
          type: array
        modifiedAt:
          example: '2017-04-18T05:55:48.685345+00:00'
          format: date-time
          readOnly: true
          type: string
        name:
          example: FRM000
          type: string
        registrationOrigin:
          allOf:
          - $ref: '#/components/schemas/RegistrationOrigin'
          nullable: true
          readOnly: true
        registryId:
          example: src_NetYd96a
          nullable: true
          type: string
        schema:
          allOf:
          - $ref: '#/components/schemas/SchemaSummary'
          example:
            id: ts_EM122lfJ
            name: Prep
        units:
          $ref: '#/components/schemas/MixtureMeasurementUnits'
        webURL:
          example: https://benchling.com/benchling/f/R8KcsjhW-academic-registry/mxt-xCUXNVyG-sbn000/edit
          readOnly: true
          type: string
      type: object
    DnaSequenceSummary:
      properties:
        entityType:
          enum:
          - dna_sequence
          type: string
        id:
          example: seq_ObbdtGhC
          type: string
        type:
          deprecated: true
          type: string
      type: object
    Translation:
      allOf:
      - $ref: '#/components/schemas/SequenceFeatureBase'
      - properties:
          aminoAcids:
            readOnly: true
            type: string
          coerceStartCodonToMethionine:
            default: false
            description: Whether to override the translation of the start codon to Methionine. Has no effect when the start codon already translates to Methionine.
            type: boolean
          end:
            description: 0-based exclusive end index. The end of the sequence is always represented as 0.
            type: integer
          geneticCode:
            default: STANDARD
            description: The genetic code to use when translating the nucleotide sequence into amino acids.
            enum:
            - STANDARD
            - VERTEBRATE_MITOCHONDRIAL
            - YEAST_MITOCHONDRIAL
            - MOLD_PROTOZOAN_COELENTERATE_MITOCHONDRIAL_MYCOPLASMA_SPIROPLASMA
            - INVERTEBRATE_MITOCHONDRIAL
            - CILIATE_DASYCLADACEAN_HEXAMITA_NUCLEAR
            - ECHINODERM_FLATWORM_MITOCHONDRIAL
            - EUPLOTID_NUCLEAR
            - BACTERIAL_ARCHAEAL_PLANT_PLASTID
            - ALTERNATIVE_YEAST_NUCLEAR
            - ASCIDIAN_MITOCHONDRIAL
            - ALTERNATIVE_FLATWORM_MITOCHONDRIAL
            - CHLOROPHYCEAN_MITOCHONDRIAL
            - TREMATODE_MITOCHONDRIAL
            - SCENEDESMUS_OBLIQUUS_MITOCHONDRIAL
            - THRAUSTOCHYTRIUM_MITOCHONDRIAL
            - RHABDOPLEURIDAE_MITOCHONDRIAL
            - CANDIDATE_DIVISION_SR1_GRACILIBACTERIA
            - PACHYSOLEN_TANNOPHILUS_NUCLEAR
            - MESODINIUM_NUCLEAR
            - PERITRICH_NUCLEAR
            - CEPHALODISCIDAE_MITOCHONDRIAL_UAA_TYR
            type: string
          regions:
            items:
              properties:
                end:
                  description: 0-based exclusive end index. The end of the sequence is always represented as 0.
                  type: integer
                start:
                  description: 0-based inclusive start index.
                  type: integer
              type: object
            type: array
          start:
            description: 0-based inclusive start index.
            type: integer
          strand:
            example: 1
            type: integer
        type: object
    Field:
      properties:
        displayValue:
          nullable: true
          readOnly: true
          type: string
        isMulti:
          readOnly: true
          type: boolean
        textValue:
          example: Amp
          nullable: true
          readOnly: true
          type: string
        type:
          allOf:
          - $ref: '#/components/schemas/FieldType'
          readOnly: true
        value:
          description: 'For single link fields, use the id of the item you want to link (eg. "seq_jdf8BV24").

            For multi-link fields, use an array of ids of the items you want to link (eg. ["seq_jdf8BV24"])

            '
          nullable: true
          oneOf:
          - type: string
          - type: boolean
          - type: number
          - type: object
          - items:
              type: string
            type: array
      required:
      - value
      type: object
    AsyncTask:
      properties:
        errors:
          oneOf:
          - description: 'Present only when status is FAILED for a bulk task. Contains information about the individual errors in the bulk task.

              '
            items:
              type: object
            type: array
          - description: 'Present only when status is FAILED for a bulk task. Contains information about the individual errors in the bulk task.

              '
            type: object
        message:
          description: Present only when status is FAILED. Contains information about the error.
          type: string
        response:
          description: Present only when status is SUCCEEDED. response can be empty if there is no data to be returned.
          type: object
        status:
          description: The current state of the task.
          enum:
          - RUNNING
          - SUCCEEDED
          - FAILED
          type: string
      required:
      - status
      type: object
    AutomationProgressStats:
      description: Processing progress information.
      properties:
        rowsFailed:
          type: integer
        rowsSucceeded:
          type: integer
        rowsUnprocessed:
          type: integer
      type: object
    BatchOrInaccessibleResource:
      oneOf:
      - $ref: '#/components/schemas/Batch'
      - $ref: '#/components/schemas/InaccessibleResource'
    DnaAlignment:
      allOf:
      - $ref: '#/components/schemas/DnaAlignmentSummary'
      - properties:
          alignedSequences:
            items:
              $ref: '#/components/schemas/AlignedSequence'
            type: array
        type: object
      type: object
    LabAutomationBenchlingAppErrors:
      properties:
        topLevelErrors:
          items:
            properties:
              errorMessage:
                type: string
            type: object
          type: array
      type: object
    Oligo:
      discriminator:
        mapping:
          DNA: DnaOligo
          RNA: RnaOligo
        propertyName: nucleotideType
      properties:
        aliases:
          description: Array of aliases
          items:
            type: string
          type: array
        apiURL:
          description: The canonical url of the Oligo in the API.
          format: uri
          readOnly: true
          type: string
        archiveRecord:
          allOf:
          - $ref: '#/components/schemas/ArchiveRecord'
          nullable: true
        authors:
          items:
            $ref: '#/components/schemas/UserSummary'
          type: array
        bases:
          description: Base pairs of the Oligo.
          example: ACTTTTT
          type: string
        createdAt:
          description: DateTime the Oligo was created.
          format: date-time
          readOnly: true
          type: string
        creator:
          $ref: '#/components/schemas/UserSummary'
        customFields:
          allOf:
          - $ref: '#/components/schemas/CustomFields'
          description: Custom fields set on the Oligo.
        entityRegistryId:
          description: Registry ID of the Oligo if registered.
          nullable: true
          type: string
        fields:
          $ref: '#/components/schemas/Fields'
        folderId:
          description: ID of the folder that contains the Oligo.
          nullable: true
          type: string
        id:
          description: ID of the Oligo.
          example: seq_bhuDUw9D
          type: string
        length:
          description: Number of bases in the Oligo.
          type: integer
        modifiedAt:
          description: DateTime the Oligo was last modified.
          format: date-time
          readOnly: true
          type: string
        name:
          description: Name of the Oligo.
          type: string
        nucleotideType:
          description: Nucleotide type of the Oligo.
          enum:
          - DNA
          - RNA
          type: string
        registrationOrigin:
          allOf:
          - $ref: '#/components/schemas/RegistrationOrigin'
          nullable: true
          readOnly: true
        registryId:
          description: Registry the Oligo is registered in.
          nullable: true
          type: string
        schema:
          allOf:
          - $ref: '#/components/schemas/SchemaSummary'
          nullable: true
        webURL:
          description: URL of the Oligo.
          example: https://benchling.com/benchling/f/lib_hBHqKbzE-oligos/seq_bhuDUw9D-test-oligo-abc/edit
          format: uri
          readOnly: true
          type: string
      type: object
    ExportAuditLogAsyncTask:
      allOf:
      - $ref: '#/components/schemas/AsyncTask'
      - additionalProperties: false
        properties:
          response:
            additionalProperties: false
            properties:
              downloadURL:
                format: uri
                type: string
            type: object
        type: object
      type: object
    RegistrationOrigin:
      properties:
        originEntryId:
          nullable: true
          readOnly: true
          type: string
        registeredAt:
          format: date-time
          readOnly: true
          type: string
      type: object
    BulkUpdateContainersAsyncTask:
      allOf:
      - $ref: '#/components/schemas/AsyncTask'
      - additionalProperties: false
        properties:
          response:
            properties:
              containers:
                items:
                  $ref: '#/components/schemas/Container'
                type: array
            type: object
        type: object
      type: object
    BulkUpdateRnaSequencesAsyncTask:
      allOf:
      - $ref: '#/components/schemas/AsyncTask'
      - additionalProperties: false
        properties:
          response:
            properties:
              rnaSequences:
                items:
                  $ref: '#/components/schemas/RnaSequence'
                type: array
            type: object
        type: object
      type: object
    BulkUpdateDnaOligosAsyncTask:
      allOf:
      - $ref: '#/components/schemas/AsyncTask'
      - additionalProperties: false
        properties:
          response:
            properties:
              dnaOligos:
                items:
                  $ref: '#/components/schemas/DnaOligo'
                type: array
            type: object
        type: object
      type: object
    CreateConsensusAlignmentAsyncTask:
      allOf:
      - $ref: '#/components/schemas/AsyncTask'
      - additionalProperties: false
        properties:
          response:
            $ref: '#/components/schemas/DnaAlignment'
        type: object
      type: object
    Ingredient:
      properties:
        amount:
          description: 'The amount value of this ingredient in its mixture, in string format (to preserve full precision). Pair with `units`. Supports scientific notation (1.23e4). One ingredient on this mixture can have an amount value of `"QS"`.

            '
          example: '12'
          nullable: true
          type: string
        catalogIdentifier:
          example: DION_004
          nullable: true
          type: string
        componentEntity:
          allOf:
          - $ref: '#/components/schemas/EntityLabels'
          - description: The entity that uniquely identifies this component.
        componentLotContainer:
          allOf:
          - $ref: '#/components/schemas/ContainerLabels'
          description: The container representing the component lot for this ingredient. This is only present if the mixture schema supports component lots in "inventory" format.
          nullable: true
        componentLotEntity:
          allOf:
          - $ref: '#/components/schemas/EntityLabels'
          description: The entity representing the component lot for this ingredient. This is only present if the mixture schema supports component lots in "inventory" format.
          nullable: true
        componentLotText:
          description: Text representing the component lot for this ingredient. This is only present if the mixture schema supports component lots in "text" format.
          example: DION_004-source_001
          nullable: true
          type: string
        hasParent:
          type: boolean
        notes:
          nullable: true
          type: string
        targetAmount:
          description: The target amount for this ingredient such that this ingredient's proportion in its mixture would preserve the equivalent ingredient's proportion in the parent mixture. Pair with `units`.
          example: '123'
          nullable: true
          readOnly: true
          type: string
        units:
          $ref: '#/components/schemas/IngredientMeasurementUnits'
      type: object
    BulkCreateCustomEntitiesAsyncTask:
      allOf:
      - $ref: '#/components/schemas/AsyncTask'
      - additionalProperties: false
        properties:
          response:
            properties:
              customEntities:
                items:
                  $ref: '#/components/schemas/CustomEntity'
                type: array
            type: object
        type: object
      type: object
  examples:
    AaSequencesFindMatchingRegionTaskResponse:
      value:
        response:
          aaSequenceMatches:
          - matchingAASequenceIds:
            - prtn_TIIi7lto
            - prtn_0qTaIIDE
            targetAASequenceId: prtn_W1Qh8teE
        status: SUCCEEDED
    DnaCreateAlignmentTaskResponse:
      value:
        response:
          alignedSequences:
          - bases: GTAGCAAAGANTAGTAGCCAGCTGTGATAAATGTCAGCTAAAAGGGGAAGCCATG
            dnaSequenceId: seq_MYmsnS1u
            name: Gene001
            sequenceId: seq_MYmsnS1u
            trimEnd: 60
            trimStart: 0
          apiURL: https://benchling.com/api/v2/dna-alignments/seqanl_6ZVdX98t
          createdAt: '2021-07-13T12:59:51.903Z'
          id: seqanl_6ZVdX98t
          modifiedAt: '2021-07-13T12:59:51.903Z'
          name: Example alignment
          webURL: https://benchling.com/benchling/f/lib_Fy2C0HOl-example/seq_UpzwvUug-consensus/edit?alignment=seqanl_6ZVdX98t
        status: SUCCEEDED
    BulkOperateCustomEntitiesTaskResponse:
      value:
        response:
          customEntities:
          - aliases:
            - sBN000
            apiURL: https://benchling.com/api/v2/custom-entities/bfi_xCUXNVyG
            archiveRecord:
              reason: Made in error
            authors:
            - handle: lpasteur
              id: ent_a0SApq3z
              name: Louis Pasteur
            createdAt: '2021-07-14T07:34:25.156Z'
            creator:
              handle: lpasteur
              id: ent_a0SApq3z
              name: Louis Pasteur
            customFields:
              Legacy ID:
                value: STR100
            entityRegistryId: sBN000
            fields:
              additionalProp1:
                displayValue: Amp
                isMulti: true
                textValue: Amp
                type: dna_sequence_link
                value:
                - seq_jdf8BV24
            folderId: lib_mrZWMrft
            id: prtn_ObbdtGhC
            modifiedAt: '2021-07-14T07:34:25.157Z'
            name: sBN000
            registrationOrigin:
              originEntryId: etr_3wievUIJ
              registeredAt: '2021-07-14T07:34:25.157Z'
            registryId: src_NetYd96a
            schema:
              id: ts_DaiFhsNA
              name: Example Schema
            webURL: https://benchling.com/benchling/f/R8KcsjhW-academic-registry/bfi-xCUXNVyG-sbn000/edit
        status: SUCCEEDED
    BulkOperateAaSequencesTaskResponse:
      value:
        response:
          aaSequences:
          - aliases:
            - Example alias
            aminoAcids: IKTATARRELAETSWTGDRLWGFSDNWAPALRRPSPSALGK
            annotations:
            - color: '#85DAE9'
              end: 10
              id: prtnann_o7zMPG0P
              name: Example annotation
              start: 0
            apiURL: https://benchling.com/api/v2/aa-sequences/prtn_7nMBOMm0
            archiveRecord:
              reason: Made in error
            createdAt: '2021-07-14T07:34:25.156Z'
            creator:
              handle: lpasteur
              id: ent_a0SApq3z
              name: Louis Pasteur
            customFields:
              Legacy ID:
                value: STR100
            entityRegistryId: sBN000
            fields:
              additionalProp1:
                displayValue: Amp
                isMulti: true
                textValue: Amp
                type: dna_sequence_link
                value:
                - seq_jdf8BV24
            folderId: lib_mrZWMrft
            id: prtn_ObbdtGhC
            length: 0
            modifiedAt: '2021-07-14T07:34:25.157Z'
            name: Example AA Sequence
            registrationOrigin:
              originEntryId: etr_3wievUIJ
              registeredAt: '2021-07-14T07:34:25.157Z'
            registryId: src_NetYd96a
            schema:
              id: ts_DaiFhsNA
              name: Example Schema
            webURL: https://benchling.com/benchling/f/lib_55UxcIps-registry/prtn_7nMBOMm0-kedchain11/edit"
        status: SUCCEEDED
    BulkOperateDnaSequencesTaskResponse:
      value:
        response:
          dnaSequences:
          - aliases:
            - Example alias
            annotations:
            - color: '#85DAE9'
              end: 10
              name: Example annotation
              start: 0
              strand: 0
              type: Example annotation type
            apiURL: https://benchling.com/api/v2/dna-sequences/seq_asQya4lk
            archiveRecord:
              reason: Made in error
            bases: GTAGCAAAGANTAGTAGCCAGCTGTGATAAATGTCAGCTAAAAGGGGAAGCCATG
            createdAt: '2021-07-13T13:16:44.315Z'
            creator:
              handle: lpasteur
              id: ent_a0SApq3z
              name: Louis Pasteur
            customFields:
              Legacy ID:
                value: STR100
            entityRegistryId: sBN000
            fields:
            - additionalProp1:
                displayValue: Amp
                isMulti: true
                textValue: Amp
                type: dna_sequence_link
                value:
                - seq_jdf8BV24
            folderId: lib_mrZWMrft
            id: seq_asQya4lk
            isCircular: true
            length: 0
            modifiedAt: '2021-07-13T13:16:44.315Z'
            name: Example sequence
            primers:
            - bases: CATCG
              bindPosition: 0
              color: '#F58A5E'
              end: 5
              name: Example primer
              oligoId: seq_HJyE332n
              overhangLength: 0
              start: 0
              strand: -1
            registrationOrigin:
              originEntryId: ent_a0SApq3z
              registeredAt: '2021-07-13T13:16:44.315Z'
            registryId: src_ae40j3TZ
            schema:
              id: ts_n4l12nf0
              name: Example schema
            translations:
            - aminoAcids: KK
              end: 0
              regions:
              - end: 0
                start: 0
              start: 0
              strand: 1
            webURL: https://benchling.com/benchling/f/lib_zky83cLg-computed-fields/seq_mnY8u4bs-chain-1/edit
        status: SUCCEEDED
    TaskRunning:
      value:
        status: RUNNING
    BulkOperateContainersTaskResponse:
      value:
        response:
          containers:
          - archiveRecord:
              reason: Made in error
            barcode: 201006-005
            checkoutRecord:
              assignee:
                handle: lpasteur
                id: ent_a0SApq3z
                name: Louis Pasteur
              comment: Example comment
              modifiedAt: '2021-07-14T12:27:27.917Z'
              status: AVAILABLE
            contents:
            - batch:
                archiveRecord:
                  reason: Made in error
                createdAt: '2021-07-14T12:27:27.917Z'
                creator:
                  handle: lpasteur
                  id: ent_a0SApq3z
                  name: Louis Pasteur
                entity:
                  aliases:
                  - Example alias
                  annotations: []
                  apiURL: https://benchling.com/api/v2/dna-sequences/seq_asQya4lk
                  archiveRecord:
                    reason: Made in error
                  bases: GTAGCAAAGANTAGTAGCCAGCTGTGATAAATGTCAGCTAAAAGGGGAAGCCATG
                  createdAt: '2021-07-14T12:27:27.917Z'
                  creator:
                    handle: lpasteur
                    id: ent_a0SApq3z
                    name: Louis Pasteur
                  customFields:
                    Legacy ID:
                      value: STR100
                  entityRegistryId: sBN000
                  fields:
                    additionalProp1:
                      displayValue: Amp
                      isMulti: true
                      textValue: Amp
                      type: dna_sequence_link
                      value:
                      - seq_jdf8BV24
                  folderId: lib_hBHqKbzE
                  id: seq_bhuDUw9D
                  isCircular: true
                  length: 0
                  modifiedAt: '2021-07-14T12:27:27.917Z'
                  name: Example entity
                  primers: []
                  registrationOrigin:
                    originEntryId: etr_3wievUIJ
                    registeredAt: '2021-07-14T07:34:25.157Z'
                  registryId: src_NetYd96a
                  schema:
                    id: ts_DaiFhsNA
                    name: Example Schema
                  translations: []
                  webURL: https://benchling.com/benchling/f/lib_hBHqKbzE-seqs/seq_bhuDUw9D-example-entity/edit
                fields:
                  additionalProp1:
                    displayValue: Amp
                    isMulti: true
                    textValue: Amp
                    type: dna_sequence_link
                    value:
                    - seq_jdf8BV24
                id: bat_UOIr8IjL
                modifiedAt: '2021-07-14T12:27:27.917Z'
                name: Example Batch
                schema:
                  id: ts_DaiFhsNA
                  name: Example Schema
                webURL: https://benchling.com/benchling/f/lib_55UxcIps-registry/bfi_YtegMKkT-batch-test/edit
              concentration:
                units: uM
                value: 5
              entity:
                aliases:
                - Example alias
                annotations: []
                apiURL: https://benchling.com/api/v2/dna-sequences/seq_asQya4lk
                archiveRecord:
                  reason: Made in error
                bases: GTAGCAAAGANTAGTAGCCAGCTGTGATAAATGTCAGCTAAAAGGGGAAGCCATG
                createdAt: '2021-07-14T12:27:27.917Z'
                creator:
                  handle: lpasteur
                  id: ent_a0SApq3z
                  name: Louis Pasteur
                customFields:
                  Legacy ID:
                    value: STR100
                entityRegistryId: sBN000
                fields:
                  additionalProp1:
                    displayValue: Amp
                    isMulti: true
                    textValue: Amp
                    type: dna_sequence_link
                    value:
                    - seq_jdf8BV24
                folderId: lib_mrZWMrft
                id: seq_bhuDUw9D
                isCircular: true
                length: 0
                modifiedAt: '2021-07-14T12:27:27.917Z'
                name: Example entity
                primers: []
                registrationOrigin:
                  originEntryId: etr_3wievUIJ
                  registeredAt: '2021-07-14T07:34:25.157Z'
                registryId: src_NetYd96a
                schema:
                  id: ts_DaiFhsNA
                  name: Example Schema
                translations: []
                webURL: https://benchling.com/benchling/f/lib_hBHqKbzE-seqs/seq_bhuDUw9D-example-entity/edit
            createdAt": '2021-07-14T12:27:27.917Z'
            creator:
              handle: lpasteur
              id: ent_a0SApq3z
              name: Louis Pasteur
            fields:
              additionalProp1:
                displayValue: Amp
                isMulti: true
                textValue: Amp
                type: dna_sequence_link
                value:
                - seq_jdf8BV24
            id: con_ZBL9QQWD
            modifiedAt: '2021-07-14T12:27:27.917Z'
            name: Example container
            parentStorageId: loc_MmtNUQIA
            parentStorageSchema:
              id: locsch_ToRk7Elm
              name: Building
            projectId: src_1m4443Ek
            quantity:
              units: mL
              value: 10
            schema:
              id: ts_DaiFhsNA
              name: Example Schema
            volume:
              units: mL
              value: 10
            webURL: https://benchling.com/samples/containers/con_FzQ1stz9
        status: SUCCEEDED
    AuditLogTaskResponse:
      value:
        response:
          downloadURL: https://benchling-temp.s3.amazonaws.com/exports/dHJgG40awwbze7a6jhaoShaqwGGpgyb1atUD4f16/entry_audit_log_etr_Fr35NTqk_doe_04Dec2024.csv?response-content-disposition=attachment&X-Amz-Algorithm=AWS4-HMAC-SHA256&X-Amz-Credential=ASIASZPD3ICD3FJP5KAL%2F20241204%2Fus-west-2%2Fs3%2Faws4_request&X-Amz-Date=20241204T194928Z&X-Amz-Expires=86400&X-Amz-SignedHeaders=host&X-Amz-Security-Token=IQo...&X-Amz-Signature=5ce237d862201e1bba540fac126852f4b1568cfa829d59618c80370a4fa58931
        status: SUCCEEDED
    EmptySuccessTaskResponse:
      value:
        response: {}
        status: SUCCEEDED
    BulkOperateRnaOligosTaskResponse:
      value:
        response:
          rnaOligos:
          - aliases:
            - Example alias
            apiURL: https://benchling.com/api/v2/rna-oligos/seq_bhuDUw9
            archiveRecord:
              reason: Made in error
            bases: ACUUUUU
            createdAt: '2021-07-13T21:00:49.245Z'
            creator:
              handle: lpasteur
              id: ent_a0SApq3z
              name: Louis Pasteur
            customFields:
              Legacy ID:
                value: STR100
            entityRegistryId: sBN000
            fields:
              additionalProp1:
                displayValue: Amp
                isMulti: true
                textValue: Amp
                type: dna_sequence_link
                value:
                - seq_jdf8BV24
            folderId: lib_mrZWMrft
            id: seq_bhuDUw9D
            length: 0
            modifiedAt: '2021-07-13T21:00:49.245Z'
            name: Example RNA Oligo
            nucleotideType: DNA
            registrationOrigin:
              originEntryId: etr_3wievUIJ
              registeredAt: '2021-07-13T21:00:49.245Z'
            registryId: src_NetYd96a
            schema:
              id: ts_DaiFhsNA
              name: Example Schema
            webURL: https://benchling.com/benchling/f/lib_hBHqKbzE-oligos/seq_bhuDUw9D-test-oligo-abc/edit
        status: SUCCEEDED
    ExportsTaskResponse:
      value:
        response:
          downloadURL: https://benchling-temp.s3.amazonaws.com/benchling-temp/RShkPPS0dj1jsn1LKnbpl7mz421kne52Ndp8UJnB/capillary/export_items/etr_HzOyiNj8.zip?response-content-disposition=attachment&X-Amz-Algorithm=AWS4-HMAC-SHA256&X-Amz-Credential=ASIAVNBDYFYCFXORLN46%2F20210714%2Fus-east-1%2Fs3%2Faws4_request&X-Amz-Date=20210714T144850Z&X-Amz-Expires=86400&X-Amz-SignedHeaders=host&X-Amz-Security-Token=IQoJb3JpZ2luX2VjEB4aCXVzLWVhc3QtMSJSDNU1IHZ81FpESNaiQLue6l%2Bjz04FWk7fNUhMxiEbLYCt5LDNAiEAhNbTM9EdeAuxlj4svhS01NmwRJZTyF3Bjzr%2BhK22ACcq%2BQMIFxAAGrebNzE1ODk2NTYwNjgiDHKa3fq33iZwsM1KdCrWA8dnOWQ1%2FXsYrrbzk7cCID6qPA%2F3MQH%2F7FaQoMCUvXj06aeH6RhMD5WZyqoaISBr%2FP4FUua%2B%2FFSdAW8UoFpur0IvkSFTi472CA7hfGmgcjspBdsTCrOA8R1ofgscYwOvGcFreenw5l1VhXZDSeXLC9yLJXPBWFzeup8uRyNXQFIHFcmNHvsLiLMUTY0S5eEBc5Zn9SAaWOcm4OGjAurpUJqpTTPOAu5VZOT2d1K2XMy%2FoH7x01Xf0MRIEd0yfyOLK60dhngbaey39vw1wMfPOm3JBvOyVdhGg1WR2sRF1RG10t7dI7iIO2Y4Z3Yb9w%2FdQhlafF8Ss45YtRRv2RRtzfpwoWE846At1pWvhP0tA0I1bhtehd6Upk%2F0iLehO5JWUiYqz1oMfefdZa30JAS9UNdKNqqsX8%2FjhAR9Ff09xKzOD%2FXzqeZwTT0EWtG6hqerKX9%2B%2BULfjB%2F44t3FjL5pRXrxRDIy0uZVI3qhjoRot5Nf7Lm9edccJJ%2BaujnHOMd96mxEcB584VO6eb63I99geVmNO%2FGpuuBvMxf2oV4AN83BEKipJEM3K4OYFI5VASfcTx2V3nMILj8FMKATYEWPYns0KxMuEpQ0Nf7dSSEiFKIfQ1px5iEvMKfPu4cGOqUBUaO0C2gNEeOUs8Fy4ci2hsLw4MW7jVnT5jLEQd2BB44hZzqkMvmeOYeiTxQB%2FgBpqAC%2FfZRF2Am3nCyLaADQYGpRhpg0QFRkBH8ukSxqOx%2BwLvLAV537t5AfFLcqjar4C9a0DXO9hgWfF3yY6HISlZ4NE9VGXei1wqy7i5ZDcbP1%2FlfWqH6LspK2rMJGgAlJthf7De%2BlQ5yJmYW%2FH7KG5eC%2Fu2MV&X-Amz-Signature=b08cad199962bcdc6d0b4b5d2409e90b67a4484ae554ce843f537d1d471ea70d
        status: SUCCEEDED
    BulkOperateDnaOligosTaskResponse:
      value:
        response:
          dnaOligos:
          - aliases:
            - Example alias
            apiURL: https://benchling.com/api/v2/dna-oligos/seq_bhuDUw9D
            archiveRecord:
              reason: Made in error
            bases: ACTTTTT
            createdAt: '2021-07-13T21:00:49.245Z'
            creator:
              handle: lpasteur
              id: ent_a0SApq3z
              name: Louis Pasteur
            customFields:
              Legacy ID:
                value: STR100
            entityRegistryId: sBN000
            fields:
              additionalProp1:
                displayValue: Amp
                isMulti: true
                textValue: Amp
                type: dna_sequence_link
                value:
                - seq_jdf8BV24
            folderId: lib_mrZWMrft
            id: seq_bhuDUw9D
            length: 0
            modifiedAt: '2021-07-13T21:00:49.245Z'
            name: Example DNA Oligo
            nucleotideType: DNA
            registrationOrigin:
              originEntryId: etr_3wievUIJ
              registeredAt: '2021-07-13T21:00:49.245Z'
            registryId: src_NetYd96a
            schema:
              id: ts_DaiFhsNA
              name: Example Schema
            webURL: https://benchling.com/benchling/f/lib_hBHqKbzE-oligos/seq_bhuDUw9D-test-oligo-abc/edit
        status: SUCCEEDED
    BulkTaskFailed:
      value:
        errors:
          index: 0
          message: Invalid field value
        message: Your request was invalid.
        status: FAILED
    TaskFailed:
      value:
        message: Alignment not found.
        status: FAILED
    BulkOperateRnaSequencesTaskResponse:
      value:
        response:
          rnaSequences:
          - aliases:
            - Example alias
            annotations:
            - color: '#85DAE9'
              end: 10
              name: Example annotation
              start: 0
              strand: 0
              type: Example annotation type
            apiURL: https://benchling.com/api/v2/rna-sequences/seq_asQya4lk
            archiveRecord:
              reason: Made in error
            bases: GUAGCAAAGANUAGUAGCCAGCUGUGAUAAAUGUCAGCUAAAAGGGGAAGCCAUG
            createdAt: '2021-07-13T13:16:44.315Z'
            creator:
              handle: lpasteur
              id: ent_a0SApq3z
              name: Louis Pasteur
            customFields:
              Legacy ID:
                value: STR100
            entityRegistryId: sBN000
            fields:
            - additionalProp1:
                displayValue: Amp
                isMulti: true
                textValue: Amp
                type: rna_sequence_link
                value: seq_jdf8BV24
            folderId: lib_mrZWMrft
            id: seq_asQya4lk
            isCircular: false
            length: 55
            modifiedAt: '2021-07-13T13:16:44.315Z'
            name: Example rna sequence
            primers:
            - bases: CAUCG
              bindPosition: 0
              color: '#F58A5E'
              end: 5
              name: Example primer
              oligoId: seq_HJyE332n
              overhangLength: 0
              start: 0
              strand: 1
            registrationOrigin:
              originEntryId: ent_a0SApq3z
              registeredAt: '2021-07-13T13:16:44.315Z'
            registryId: src_ae40j3TZ
            schema:
              id: ts_n4l12nf0
              name: Example schema
            translations:
            - aminoAcids: KK
              end: 0
              regions:
              - end: 0
                start: 0
              start: 0
              strand: 1
            webURL: https://benchling.com/benchling/f/lib_zky83cLg-example/seq_mnY8u4bs-chain-1/edit
        status: SUCCEEDED
    AOPProcessOutputTaskResponse:
      value:
        response:
          apiURL: https://benchling.com/api/v2/automation-output-processors/aop_C3wGA9HF
          archiveRecord:
            reason: Made in error
          assayRunId: 588aca02-1a20-4b94-a40f-b3f3a0081749
          automationFileConfig:
            name: MyInstrumentName
          file:
            id: c33fe52d-fe6a-4c98-adcd-211bdf6778f7
            mimeType: text/csv
            name: MyInstrumentInputFile.csv
            type: RAW_FILE
            uploadStatus: IN_PROGRESS
          id: aop_C3wGA9HF
          status: SUCCEEDED
        status: SUCCEEDED
    BulkOperateFeaturesTaskResponse:
      value:
        response:
          features:
          - color: '#75C6A9'
            featureLibraryId: featlib_cWYhFmxq
            featureType: promoter
            id: feat_XhYjGBpFoZ4wVary
            matchType: nucleotide
            name: lacZalpha promoter
            pattern: ggagtactgtcctccgagcggagtactgtcctccgagcggagtactgtcctccgagcggagtactgtcctccgagcggagttctgtcctccga
        status: SUCCEEDED
    AIGGenerateInputTaskResponse:
      value:
        response:
          apiURL: https://benchling.com/api/v2/automation-input-generators/aif_C3wGA9HF
          assayRunId: 588aca02-1a20-4b94-a40f-b3f3a0081749
          automationFileConfig:
            name: MyInstrumentName
          file:
            id: c33fe52d-fe6a-4c98-adcd-211bdf6778f7
            mimeType: text/csv
            name: MyInstrumentInputFile.csv
            type: RAW_FILE
            uploadStatus: IN_PROGRESS
          id: aif_C3wGA9HF
          status: SUCCEEDED
        status: SUCCEEDED
    TransfersTaskResponse:
      value:
        response:
          destinationContainers:
          - archiveRecord:
              reason: Made in error
            barcode: 201006-005
            checkoutRecord:
              assignee:
                handle: lpasteur
                id: ent_a0SApq3z
                name: Louis Pasteur
              comment: Example comment
              modifiedAt: '2021-07-14T12:27:27.917Z'
              status: AVAILABLE
            contents:
            - batch:
                archiveRecord:
                  reason: Made in error
                createdAt: '2021-07-14T12:27:27.917Z'
                creator:
                  handle: lpasteur
                  id: ent_a0SApq3z
                  name: Louis Pasteur
                entity:
                  aliases:
                  - Example alias
                  annotations: []
                  apiURL: https://benchling.com/api/v2/dna-sequences/seq_asQya4lk
                  archiveRecord:
                    reason: Made in error
                  bases: GTAGCAAAGANTAGTAGCCAGCTGTGATAAATGTCAGCTAAAAGGGGAAGCCATG
                  createdAt: '2021-07-14T12:27:27.917Z'
                  creator:
                    handle: lpasteur
                    id: ent_a0SApq3z
                    name: Louis Pasteur
                  customFields:
                    Legacy ID:
                      value: STR100
                  entityRegistryId: sBN000
                  fields:
                    additionalProp1:
                      displayValue: Amp
                      isMulti: true
                      textValue: Amp
                      type: dna_sequence_link
                      value:
                      - seq_jdf8BV24
                  folderId: lib_hBHqKbzE
                  id: seq_bhuDUw9D
                  isCircular: true
                  length: 0
                  modifiedAt: '2021-07-14T12:27:27.917Z'
                  name: Example entity
                  primers: []
                  registrationOrigin:
                    originEntryId: etr_3wievUIJ
                    registeredAt: '2021-07-14T07:34:25.157Z'
                  registryId: src_NetYd96a
                  schema:
                    id: ts_DaiFhsNA
                    name: Example Schema
                  translations: []
                  webURL: https://benchling.com/benchling/f/lib_hBHqKbzE-seqs/seq_bhuDUw9D-example-entity/edit
                fields:
                  additionalProp1:
                    displayValue: Amp
                    isMulti: true
                    textValue: Amp
                    type: dna_sequence_link
                    value:
                    - seq_jdf8BV24
                id: bat_UOIr8IjL
                modifiedAt: '2021-07-14T12:27:27.917Z'
                name: Example Batch
                schema:
                  id: ts_DaiFhsNA
                  name: Example Schema
                webURL: https://benchling.com/benchling/f/lib_55UxcIps-registry/bfi_YtegMKkT-batch-test/edit
              concentration:
                units: uM
                value: 5
              entity:
                aliases:
                - Example alias
                annotations: []
                apiURL: https://benchling.com/api/v2/dna-sequences/seq_asQya4lk
                archiveRecord:
                  reason: Made in error
                bases: GTAGCAAAGANTAGTAGCCAGCTGTGATAAATGTCAGCTAAAAGGGGAAGCCATG
                createdAt: '2021-07-14T12:27:27.917Z'
                creator:
                  handle: lpasteur
                  id: ent_a0SApq3z
                  name: Louis Pasteur
                customFields:
                  Legacy ID:
                    value: STR100
                entityRegistryId: sBN000
                fields:
                  additionalProp1:
                    displayValue: Amp
                    isMulti: true
                    textValue: Amp
                    type: dna_sequence_link
                    value:
                    - seq_jdf8BV24
                folderId: lib_mrZWMrft
                id: seq_bhuDUw9D
                isCircular: true
                length: 0
                modifiedAt: '2021-07-14T12:27:27.917Z'
                name: Example entity
                primers: []
                registrationOrigin:
                  originEntryId: etr_3wievUIJ
                  registeredAt: '2021-07-14T07:34:25.157Z'
                registryId: src_NetYd96a
                schema:
                  id: ts_DaiFhsNA
                  name: Example Schema
                translations: []
                webURL: https://benchling.com/benchling/f/lib_hBHqKbzE-seqs/seq_bhuDUw9D-example-entity/edit
            createdAt": '2021-07-14T12:27:27.917Z'
            creator:
              handle: lpasteur
              id: ent_a0SApq3z
              name: Louis Pasteur
            fields:
              additionalProp1:
                displayValue: Amp
                isMulti: true
                textValue: Amp
                type: dna_sequence_link
                value:
                - seq_jdf8BV24
            id: con_ZBL9QQWD
            modifiedAt: '2021-07-14T12:27:27.917Z'
            name: Example container
            parentStorageId: loc_MmtNUQIA
            parentStorageSchema:
              id: locsch_ToRk7Elm
              name: Building
            projectId: src_1m4443Ek
            quantity:
              units: mL
              value: 10
            schema:
              id: ts_DaiFhsNA
              name: Example Schema
            volume:
              units: mL
              value: 10
            webURL: https://benchling.com/samples/containers/con_FzQ1stz9
        status: SUCCEEDED
  securitySchemes:
    basicApiKeyAuth:
      description: Use issued API key for standard access to the API
      scheme: basic
      type: http
    basicClientIdSecretAuth:
      description: Auth used as part of client credentials OAuth flow prior to receiving a bearer token.
      scheme: basic
      type: http
    oAuth:
      description: OAuth2 Client Credentials flow intended for service access
      flows:
        clientCredentials:
          scopes: {}
          tokenUrl: /api/v2/token
      type: oauth2
externalDocs:
  description: Additional API Documentation
  url: https://docs.benchling.com