generated: '2026-08-02'
method: searched
source: https://github.com/BostonGene
sdks: none
note: >-
  BostonGene ships NO API client libraries or SDKs — it publishes no API. What it
  does publish first-party is open-source computational-biology research code on
  GitHub (algorithms, analysis notebooks and one sequencing pipeline), catalogued
  below so the repo records the real software surface. Registry checks were misses:
  npm search "bostongene" returned 0 packages; PyPI has no `bostongene`, `pyigmap`
  or BostonGene-owned `kassandra` (the PyPI `kassandra` project belongs to an
  unrelated author). Because none of these are API client libraries, this artifact
  deliberately does NOT carry an `SDKs` pointer in apis.yml.
registries_probed:
- registry: npm
  query: bostongene
  results: 0
- registry: pypi
  names: [bostongene, pyigmap, kassandra-bg]
  results: 0
- registry: pypi
  name: kassandra
  results: 1
  official: false
  note: unrelated Bayesian deep-learning package by James Montgomery
packages:
- language: python
  registry: github
  name: pyigmap
  url: https://github.com/BostonGene/pyigmap
  license: GPL-3.0
  official: true
  kind: bioinformatics-pipeline
  description: Pipeline for mapping and annotating T- and B-cell receptor gene rearrangement
    sequences (AIRR-seq / TCR-BCR repertoire); nextflow workflow. Marked under development.
- language: python
  registry: github
  name: Kassandra
  url: https://github.com/BostonGene/Kassandra
  official: true
  kind: algorithm
  description: BostonGene cell deconvolution algorithm from RNA-seq.
- language: python
  registry: github
  name: MFP
  url: https://github.com/BostonGene/MFP
  official: true
  kind: analysis-notebooks
  description: Molecular Functional Portraits — tumor microenvironment classification.
- language: python
  registry: github
  name: Somatic_reference_standards
  url: https://github.com/BostonGene/Somatic_reference_standards
  official: true
  kind: reference-data
  description: Extended somatic reference standards of model cancer cell lines.
- language: python
  registry: github
  name: Cell_Atlas_MxIF
  url: https://github.com/BostonGene/Cell_Atlas_MxIF
  official: true
  kind: analysis-notebooks
  description: Multiplexed immunofluorescence cell atlas analysis.
- language: python
  registry: github
  name: LME
  url: https://github.com/BostonGene/LME
  official: true
  kind: algorithm
  description: Functions for classifying DLBCL into lymphoma microenvironment (LME)
    types.
- language: python
  registry: github
  name: Multiregional_ccRCC
  url: https://github.com/BostonGene/Multiregional_ccRCC
  official: true
  kind: analysis-notebooks
  description: Multi-omics analysis of multiregional clear-cell renal cell carcinoma
    samples.
x-evidence:
  fetched: '2026-08-02'
  url: https://api.github.com/orgs/BostonGene/repos
  http_status: 200
  repos_total: 16
  repos_catalogued: 7