# GDC GraphQL schema (SDL) # Source: https://api.gdc.cancer.gov/v0/graphql (anonymous introspection, HTTP 200, 2026-09-05) # Provider: NCI Genomic Data Commons (Cancer.gov / National Cancer Institute) # method: searched — rendered verbatim from the live introspection response; nothing added. schema { query: Root mutation: Mutation } type Aggregations { buckets: [Bucket] } type Aliquot implements Node { id: ID! annotations: CaseAnnotations center: FileCenter aliquot_id: String aliquot_quantity: Float aliquot_volume: Float amount: Float analyte_type: String concentration: Float created_datetime: String no_matched_normal_low_pass_wgs: String no_matched_normal_targeted_sequencing: String no_matched_normal_wgs: String no_matched_normal_wxs: String selected_normal_low_pass_wgs: String selected_normal_targeted_sequencing: String selected_normal_wgs: String selected_normal_wxs: String source_center: String state: String submitter_id: String updated_datetime: String score: Int } type AliquotConnection { pageInfo: PageInfo! edges: [AliquotEdge]! total: Int! } type AliquotEdge { node: Aliquot cursor: String! } type Aliquots { hits(offset: Int, sort: [Sort], filters: FiltersArgument, cohort_id: String, case_filters: FiltersArgument, before: String, after: String, first: Int, last: Int): AliquotConnection } type Analysis { protein_mutations: ProteinMutations top_cases_count_by_genes: TopCasesCountByGenes pvalue(data: [[Int]]!): Float } type Analyte implements Node { id: ID! aliquots: Aliquots annotations: CaseAnnotations a260_a280_ratio: Float amount: Float analyte_id: String analyte_quantity: Float analyte_type: String analyte_volume: Float concentration: Float created_datetime: String dna_integrity_number: Float experimental_protocol_type: String normal_tumor_genotype_snp_match: String ribosomal_rna_28s_18s_ratio: Float rna_integrity_number: Float spectrophotometer_method: String state: String submitter_id: String updated_datetime: String well_number: String score: Int } type AnalyteConnection { pageInfo: PageInfo! edges: [AnalyteEdge]! total: Int! } type AnalyteEdge { node: Analyte cursor: String! } type Analytes { hits(offset: Int, sort: [Sort], filters: FiltersArgument, cohort_id: String, case_filters: FiltersArgument, before: String, after: String, first: Int, last: Int): AnalyteConnection } type Annotation implements Node { id: ID! annotation_autocomplete: String annotation_id: String case_id: String case_submitter_id: String category: String classification: String created_datetime: String entity_id: String entity_submitter_id: String entity_type: String legacy_created_datetime: String legacy_updated_datetime: String notes: String state: String status: String submitter_id: String updated_datetime: String project: Project score: Int } type AnnotationAggregations { annotation_autocomplete: Aggregations annotation_id: Aggregations case_id: Aggregations case_submitter_id: Aggregations category: Aggregations classification: Aggregations created_datetime: Aggregations entity_id: Aggregations entity_submitter_id: Aggregations entity_type: Aggregations legacy_created_datetime: Aggregations legacy_updated_datetime: Aggregations notes: Aggregations project__code: Aggregations project__dbgap_accession_number: Aggregations project__disease_type: Aggregations project__intended_release_date: Aggregations project__name: Aggregations project__primary_site: Aggregations project__program__dbgap_accession_number: Aggregations project__program__name: Aggregations project__program__program_id: Aggregations project__project_id: Aggregations project__releasable: Aggregations project__released: Aggregations project__state: Aggregations state: Aggregations status: Aggregations submitter_id: Aggregations updated_datetime: Aggregations } type AnnotationConnection { pageInfo: PageInfo! edges: [AnnotationEdge]! total: Int! } type AnnotationEdge { node: Annotation cursor: String! } type Annotations { facets(filters: FiltersArgument, facets: [String]!): JSONString aggregations(filters: FiltersArgument, cohort_id: String, case_filters: FiltersArgument, aggregations_filter_themselves: Boolean = true): AnnotationAggregations hits(score: String, query: String, offset: Int, sort: [Sort], filters: FiltersArgument, cohort_id: String, case_filters: FiltersArgument, before: String, after: String, first: Int, last: Int): AnnotationConnection } type AppendCaseSet { set_id: String size: Int time: Float set_type: String intent: String } type AppendExploreSet { case(input: AppendSetInput): AppendCaseSet gene(input: AppendSetInput): AppendGeneSet ssm(input: AppendSetInput): AppendSsmSet } type AppendGeneSet { set_id: String size: Int time: Float set_type: String intent: String } type AppendRepositoryCaseSet { set_id: String size: Int time: Float set_type: String intent: String } type AppendRepositoryFileSet { set_id: String size: Int time: Float set_type: String intent: String } type AppendRepositorySet { case(input: AppendSetInput): AppendRepositoryCaseSet file(input: AppendSetInput): AppendRepositoryFileSet } type AppendSet { explore: AppendExploreSet repository: AppendRepositorySet } input AppendSetInput { filters: FiltersArgument! cohort_id: String case_filters: FiltersArgument size: Int sort: [Sort] score: String set_id: String! set_type: SetType intent: Intent } type AppendSsmSet { set_id: String size: Int time: Float set_type: String intent: String } type Archive { archive_id: String created_datetime: String data_category: String data_format: String data_type: String error_type: String file_name: String file_size: Float md5sum: String revision: Float state: String state_comment: String submitter_id: String updated_datetime: String id: String } type AssociatedEntities { hits(offset: Int, sort: [Sort], filters: FiltersArgument, cohort_id: String, case_filters: FiltersArgument, before: String, after: String, first: Int, last: Int): AssociatedEntityConnection } type AssociatedEntity implements Node { id: ID! case_id: String entity_id: String entity_submitter_id: String entity_type: String score: Int } type AssociatedEntityConnection { pageInfo: PageInfo! edges: [AssociatedEntityEdge]! total: Int! } type AssociatedEntityEdge { node: AssociatedEntity cursor: String! } type Bucket { doc_count: Int key: String key_as_string: String } type CNV implements Node { id: ID! chromosome: String cnv_autocomplete: String cnv_change: String cnv_change_5_category: String cnv_id: String end_position: Float gene_level_cn: Boolean ncbi_build: String start_position: Float consequence: CNVConsequences occurrence: CNVOccurrences score: Int } type CNVAggregations { chromosome: Aggregations cnv_autocomplete: Aggregations cnv_change: Aggregations cnv_change_5_category: Aggregations cnv_id: Aggregations consequence__consequence_id: Aggregations consequence__gene__biotype: Aggregations consequence__gene__gene_id: Aggregations consequence__gene__is_cancer_gene_census: Aggregations consequence__gene__symbol: Aggregations end_position: NumericAggregations gene_level_cn: Aggregations ncbi_build: Aggregations occurrence__case__available_variation_data: Aggregations occurrence__case__case_id: Aggregations occurrence__case__consent_type: Aggregations occurrence__case__days_to_consent: NumericAggregations occurrence__case__demographic__age_at_index: NumericAggregations occurrence__case__demographic__age_is_obfuscated: Aggregations occurrence__case__demographic__cause_of_death: Aggregations occurrence__case__demographic__days_to_birth: NumericAggregations occurrence__case__demographic__days_to_death: NumericAggregations occurrence__case__demographic__demographic_id: Aggregations occurrence__case__demographic__ethnicity: Aggregations occurrence__case__demographic__race: Aggregations occurrence__case__demographic__sex_at_birth: Aggregations occurrence__case__demographic__state: Aggregations occurrence__case__demographic__submitter_id: Aggregations occurrence__case__demographic__vital_status: Aggregations occurrence__case__demographic__year_of_birth: NumericAggregations occurrence__case__demographic__year_of_death: NumericAggregations occurrence__case__diagnoses__age_at_diagnosis: NumericAggregations occurrence__case__diagnoses__ajcc_clinical_m: Aggregations occurrence__case__diagnoses__ajcc_clinical_n: Aggregations occurrence__case__diagnoses__ajcc_clinical_stage: Aggregations occurrence__case__diagnoses__ajcc_clinical_t: Aggregations occurrence__case__diagnoses__ajcc_pathologic_m: Aggregations occurrence__case__diagnoses__ajcc_pathologic_n: Aggregations occurrence__case__diagnoses__ajcc_pathologic_stage: Aggregations occurrence__case__diagnoses__ajcc_pathologic_t: Aggregations occurrence__case__diagnoses__ajcc_staging_system_edition: Aggregations occurrence__case__diagnoses__ann_arbor_b_symptoms: Aggregations occurrence__case__diagnoses__ann_arbor_clinical_stage: Aggregations occurrence__case__diagnoses__ann_arbor_extranodal_involvement: Aggregations occurrence__case__diagnoses__ann_arbor_pathologic_stage: Aggregations occurrence__case__diagnoses__burkitt_lymphoma_clinical_variant: Aggregations occurrence__case__diagnoses__classification_of_tumor: Aggregations occurrence__case__diagnoses__cog_renal_stage: Aggregations occurrence__case__diagnoses__days_to_diagnosis: NumericAggregations occurrence__case__diagnoses__days_to_last_follow_up: NumericAggregations occurrence__case__diagnoses__days_to_last_known_disease_status: NumericAggregations occurrence__case__diagnoses__days_to_recurrence: NumericAggregations occurrence__case__diagnoses__diagnosis_id: Aggregations occurrence__case__diagnoses__diagnosis_is_primary_disease: Aggregations occurrence__case__diagnoses__esophageal_columnar_dysplasia_degree: Aggregations occurrence__case__diagnoses__esophageal_columnar_metaplasia_present: Aggregations occurrence__case__diagnoses__figo_stage: Aggregations occurrence__case__diagnoses__figo_staging_edition_year: Aggregations occurrence__case__diagnoses__gastric_esophageal_junction_involvement: Aggregations occurrence__case__diagnoses__goblet_cells_columnar_mucosa_present: Aggregations occurrence__case__diagnoses__icd_10_code: Aggregations occurrence__case__diagnoses__igcccg_stage: Aggregations occurrence__case__diagnoses__inss_stage: Aggregations occurrence__case__diagnoses__international_prognostic_index: Aggregations occurrence__case__diagnoses__iss_stage: Aggregations occurrence__case__diagnoses__last_known_disease_status: Aggregations occurrence__case__diagnoses__laterality: Aggregations occurrence__case__diagnoses__masaoka_stage: Aggregations occurrence__case__diagnoses__metastasis_at_diagnosis: Aggregations occurrence__case__diagnoses__method_of_diagnosis: Aggregations occurrence__case__diagnoses__morphology: Aggregations occurrence__case__diagnoses__pathology_details__anaplasia_present: Aggregations occurrence__case__diagnoses__pathology_details__anaplasia_present_type: Aggregations occurrence__case__diagnoses__pathology_details__bone_marrow_malignant_cells: Aggregations occurrence__case__diagnoses__pathology_details__breslow_thickness: NumericAggregations occurrence__case__diagnoses__pathology_details__circumferential_resection_margin: NumericAggregations occurrence__case__diagnoses__pathology_details__columnar_mucosa_present: Aggregations occurrence__case__diagnoses__pathology_details__dysplasia_degree: Aggregations occurrence__case__diagnoses__pathology_details__dysplasia_type: Aggregations occurrence__case__diagnoses__pathology_details__greatest_tumor_dimension: NumericAggregations occurrence__case__diagnoses__pathology_details__gross_tumor_weight: NumericAggregations occurrence__case__diagnoses__pathology_details__largest_extrapelvic_peritoneal_focus: Aggregations occurrence__case__diagnoses__pathology_details__lymph_node_involved_site: Aggregations occurrence__case__diagnoses__pathology_details__lymph_node_involvement: Aggregations occurrence__case__diagnoses__pathology_details__lymph_nodes_positive: NumericAggregations occurrence__case__diagnoses__pathology_details__lymph_nodes_tested: NumericAggregations occurrence__case__diagnoses__pathology_details__lymphatic_invasion_present: Aggregations occurrence__case__diagnoses__pathology_details__margin_status: Aggregations occurrence__case__diagnoses__pathology_details__metaplasia_present: Aggregations occurrence__case__diagnoses__pathology_details__morphologic_architectural_pattern: Aggregations occurrence__case__diagnoses__pathology_details__non_nodal_regional_disease: Aggregations occurrence__case__diagnoses__pathology_details__non_nodal_tumor_deposits: Aggregations occurrence__case__diagnoses__pathology_details__number_proliferating_cells: NumericAggregations occurrence__case__diagnoses__pathology_details__pathology_detail_id: Aggregations occurrence__case__diagnoses__pathology_details__percent_tumor_invasion: NumericAggregations occurrence__case__diagnoses__pathology_details__perineural_invasion_present: Aggregations occurrence__case__diagnoses__pathology_details__peripancreatic_lymph_nodes_positive: Aggregations occurrence__case__diagnoses__pathology_details__peripancreatic_lymph_nodes_tested: NumericAggregations occurrence__case__diagnoses__pathology_details__prostatic_chips_positive_count: NumericAggregations occurrence__case__diagnoses__pathology_details__prostatic_chips_total_count: NumericAggregations occurrence__case__diagnoses__pathology_details__prostatic_involvement_percent: NumericAggregations occurrence__case__diagnoses__pathology_details__state: Aggregations occurrence__case__diagnoses__pathology_details__submitter_id: Aggregations occurrence__case__diagnoses__pathology_details__transglottic_extension: Aggregations occurrence__case__diagnoses__pathology_details__tumor_largest_dimension_diameter: NumericAggregations occurrence__case__diagnoses__pathology_details__vascular_invasion_present: Aggregations occurrence__case__diagnoses__pathology_details__vascular_invasion_type: Aggregations occurrence__case__diagnoses__primary_diagnosis: Aggregations occurrence__case__diagnoses__primary_gleason_grade: Aggregations occurrence__case__diagnoses__prior_malignancy: Aggregations occurrence__case__diagnoses__prior_treatment: Aggregations occurrence__case__diagnoses__progression_or_recurrence: Aggregations occurrence__case__diagnoses__residual_disease: Aggregations occurrence__case__diagnoses__secondary_gleason_grade: Aggregations occurrence__case__diagnoses__site_of_resection_or_biopsy: Aggregations occurrence__case__diagnoses__state: Aggregations occurrence__case__diagnoses__submitter_id: Aggregations occurrence__case__diagnoses__synchronous_malignancy: Aggregations occurrence__case__diagnoses__tissue_or_organ_of_origin: Aggregations occurrence__case__diagnoses__treatments__chemo_concurrent_to_radiation: Aggregations occurrence__case__diagnoses__treatments__days_to_treatment_end: NumericAggregations occurrence__case__diagnoses__treatments__days_to_treatment_start: NumericAggregations occurrence__case__diagnoses__treatments__initial_disease_status: Aggregations occurrence__case__diagnoses__treatments__number_of_cycles: NumericAggregations occurrence__case__diagnoses__treatments__regimen_or_line_of_therapy: Aggregations occurrence__case__diagnoses__treatments__state: Aggregations occurrence__case__diagnoses__treatments__submitter_id: Aggregations occurrence__case__diagnoses__treatments__therapeutic_agents: Aggregations occurrence__case__diagnoses__treatments__treatment_dose: NumericAggregations occurrence__case__diagnoses__treatments__treatment_frequency: Aggregations occurrence__case__diagnoses__treatments__treatment_id: Aggregations occurrence__case__diagnoses__treatments__treatment_intent_type: Aggregations occurrence__case__diagnoses__treatments__treatment_or_therapy: Aggregations occurrence__case__diagnoses__treatments__treatment_outcome: Aggregations occurrence__case__diagnoses__treatments__treatment_type: Aggregations occurrence__case__diagnoses__treatments__treatment_type_administered: Aggregations occurrence__case__diagnoses__tumor_grade: Aggregations occurrence__case__diagnoses__year_of_diagnosis: NumericAggregations occurrence__case__disease_type: Aggregations occurrence__case__exposures__alcohol_days_per_week: NumericAggregations occurrence__case__exposures__alcohol_history: Aggregations occurrence__case__exposures__alcohol_intensity: Aggregations occurrence__case__exposures__cigarettes_per_day: NumericAggregations occurrence__case__exposures__exposure_id: Aggregations occurrence__case__exposures__pack_years_smoked: NumericAggregations occurrence__case__exposures__state: Aggregations occurrence__case__exposures__submitter_id: Aggregations occurrence__case__exposures__tobacco_smoking_onset_year: NumericAggregations occurrence__case__exposures__tobacco_smoking_quit_year: NumericAggregations occurrence__case__exposures__tobacco_smoking_status: Aggregations occurrence__case__family_histories__family_history_id: Aggregations occurrence__case__family_histories__relationship_age_at_diagnosis: NumericAggregations occurrence__case__family_histories__relationship_primary_diagnosis: Aggregations occurrence__case__family_histories__relationship_type: Aggregations occurrence__case__family_histories__relative_with_cancer_history: Aggregations occurrence__case__family_histories__state: Aggregations occurrence__case__family_histories__submitter_id: Aggregations occurrence__case__follow_ups__days_to_follow_up: NumericAggregations occurrence__case__follow_ups__follow_up_id: Aggregations occurrence__case__follow_ups__molecular_tests__gene_symbol: Aggregations occurrence__case__follow_ups__molecular_tests__molecular_analysis_method: Aggregations occurrence__case__follow_ups__molecular_tests__molecular_test_id: Aggregations occurrence__case__follow_ups__molecular_tests__submitter_id: Aggregations occurrence__case__follow_ups__molecular_tests__test_result: Aggregations occurrence__case__follow_ups__other_clinical_attributes__other_clinical_attribute_id: Aggregations occurrence__case__follow_ups__other_clinical_attributes__submitter_id: Aggregations occurrence__case__follow_ups__submitter_id: Aggregations occurrence__case__index_date: Aggregations occurrence__case__lost_to_followup: Aggregations occurrence__case__observation__copy_number: NumericAggregations occurrence__case__observation__observation_id: Aggregations occurrence__case__observation__sample__tumor_sample_barcode: Aggregations occurrence__case__observation__sample__tumor_sample_uuid: Aggregations occurrence__case__observation__sample_ploidy_integer: NumericAggregations occurrence__case__observation__src_file_id: Aggregations occurrence__case__observation__variant_calling__variant_caller: Aggregations occurrence__case__observation__variant_status: Aggregations occurrence__case__primary_site: Aggregations occurrence__case__project__dbgap_accession_number: Aggregations occurrence__case__project__disease_type: Aggregations occurrence__case__project__intended_release_date: Aggregations occurrence__case__project__name: Aggregations occurrence__case__project__primary_site: Aggregations occurrence__case__project__program__dbgap_accession_number: Aggregations occurrence__case__project__program__name: Aggregations occurrence__case__project__program__program_id: Aggregations occurrence__case__project__project_id: Aggregations occurrence__case__project__releasable: Aggregations occurrence__case__project__released: Aggregations occurrence__case__project__state: Aggregations occurrence__case__samples__portions__analytes__aliquots__aliquot_id: Aggregations occurrence__case__samples__portions__analytes__aliquots__submitter_id: Aggregations occurrence__case__samples__portions__analytes__analyte_id: Aggregations occurrence__case__samples__portions__analytes__analyte_type: Aggregations occurrence__case__samples__portions__analytes__submitter_id: Aggregations occurrence__case__samples__portions__portion_id: Aggregations occurrence__case__samples__portions__slides__section_location: Aggregations occurrence__case__samples__portions__slides__slide_id: Aggregations occurrence__case__samples__portions__slides__submitter_id: Aggregations occurrence__case__samples__portions__submitter_id: Aggregations occurrence__case__samples__preservation_method: Aggregations occurrence__case__samples__sample_id: Aggregations occurrence__case__samples__sample_type: Aggregations occurrence__case__samples__specimen_type: Aggregations occurrence__case__samples__submitter_id: Aggregations occurrence__case__samples__tissue_type: Aggregations occurrence__case__samples__tumor_descriptor: Aggregations occurrence__case__state: Aggregations occurrence__case__submitter_id: Aggregations occurrence__case__tissue_source_site__bcr_id: Aggregations occurrence__case__tissue_source_site__code: Aggregations occurrence__case__tissue_source_site__name: Aggregations occurrence__case__tissue_source_site__project: Aggregations occurrence__case__tissue_source_site__tissue_source_site_id: Aggregations occurrence__occurrence_id: Aggregations start_position: NumericAggregations } type CNVConnection { pageInfo: PageInfo! edges: [CNVEdge]! total: Int! } type CNVConsequence implements Node { id: ID! gene: CNVGene consequence_id: String score: Int } type CNVConsequenceConnection { pageInfo: PageInfo! edges: [CNVConsequenceEdge]! total: Int! } type CNVConsequenceEdge { node: CNVConsequence cursor: String! } type CNVConsequences { hits(offset: Int, sort: [Sort], filters: FiltersArgument, cohort_id: String, case_filters: FiltersArgument, before: String, after: String, first: Int, last: Int): CNVConsequenceConnection } type CNVEdge { node: CNV cursor: String! } type CNVGene { biotype: String gene_id: String is_cancer_gene_census: Boolean symbol: String id: String } type CNVObservation implements Node { id: ID! sample: CNVObservationSample variant_calling: CNVVariantCalling copy_number: Float observation_id: String sample_ploidy_integer: Float src_file_id: String variant_status: String score: Int } type CNVObservationConnection { pageInfo: PageInfo! edges: [CNVObservationEdge]! total: Int! } type CNVObservationEdge { node: CNVObservation cursor: String! } type CNVObservationSample { tumor_sample_barcode: String tumor_sample_uuid: String id: String } type CNVObservations { hits(offset: Int, sort: [Sort], filters: FiltersArgument, cohort_id: String, case_filters: FiltersArgument, before: String, after: String, first: Int, last: Int): CNVObservationConnection } type CNVOccurrence implements Node { id: ID! case: CNVOccurrenceCase occurrence_id: String score: Int } type CNVOccurrenceCase { available_variation_data: [String] demographic: EDemographic diagnoses: EDiagnoses exposures: EExposures family_histories: EFamilyHistories observations: CNVObservations project: Project tissue_source_type: ETissueSourceSite case_id: String consent_type: String days_to_consent: Float disease_type: String index_date: String lost_to_followup: String primary_site: String state: String submitter_id: String id: String } type CNVOccurrenceConnection { pageInfo: PageInfo! edges: [CNVOccurrenceEdge]! total: Int! } type CNVOccurrenceEdge { node: CNVOccurrence cursor: String! } type CNVOccurrences { hits(offset: Int, sort: [Sort], filters: FiltersArgument, cohort_id: String, case_filters: FiltersArgument, before: String, after: String, first: Int, last: Int): CNVOccurrenceConnection } type CNVVariantCalling { variant_caller: String id: String } type CNVs { facets(filters: FiltersArgument, facets: [String]!): JSONString aggregations(filters: FiltersArgument, cohort_id: String, case_filters: FiltersArgument, aggregations_filter_themselves: Boolean = true): CNVAggregations hits(score: String, query: String, offset: Int, sort: [Sort], filters: FiltersArgument, cohort_id: String, case_filters: FiltersArgument, before: String, after: String, first: Int, last: Int): CNVConnection } type CartSummary { aggregations(case_filters: FiltersArgument, cohort_id: String, filters: FiltersArgument): CartSummaryAggs } type CartSummaryAggs { access: SummaryAggregations data_format: SummaryAggregations data_type: SummaryAggregations experimental_strategy: SummaryAggregations project__primary_site: SummaryAggregations project__project_id: SummaryAggregations fs: FileSize } type CartSummaryBucket { cases: CartSummaryCasesCount doc_count: Int case_count: Int file_size: Float key: String } type CartSummaryCasesCount { doc_count: Int } type Case implements Node { id: ID! aliquot_ids: String analyte_ids: String case_autocomplete: String case_id: String consent_type: String created_datetime: String days_to_consent: Float days_to_lost_to_followup: Float diagnosis_ids: String disease_type: String index_date: String lost_to_followup: String portion_ids: String primary_site: String sample_ids: String slide_ids: String state: String submitter_aliquot_ids: String submitter_analyte_ids: String submitter_diagnosis_ids: String submitter_id: String submitter_portion_ids: String submitter_sample_ids: String submitter_slide_ids: String updated_datetime: String annotations: CaseAnnotations demographic: Demographic diagnoses: Diagnoses exposures: Exposures family_histories: FamilyHistories files: CaseFiles follow_ups: FollowUps project: Project samples: Samples summary: Summary tissue_source_site: TissueSourceSite score: Int } type CaseAggregations { aliquot_ids: Aggregations analyte_ids: Aggregations annotations__annotation_id: Aggregations annotations__case_id: Aggregations annotations__case_submitter_id: Aggregations annotations__category: Aggregations annotations__classification: Aggregations annotations__created_datetime: Aggregations annotations__creator: Aggregations annotations__entity_id: Aggregations annotations__entity_submitter_id: Aggregations annotations__entity_type: Aggregations annotations__legacy_created_datetime: Aggregations annotations__legacy_updated_datetime: Aggregations annotations__notes: Aggregations annotations__state: Aggregations annotations__status: Aggregations annotations__submitter_id: Aggregations annotations__updated_datetime: Aggregations case_autocomplete: Aggregations case_id: Aggregations consent_type: Aggregations created_datetime: Aggregations days_to_consent: NumericAggregations days_to_lost_to_followup: NumericAggregations demographic__age_at_index: NumericAggregations demographic__age_is_obfuscated: Aggregations demographic__cause_of_death: Aggregations demographic__cause_of_death_source: Aggregations demographic__country_of_birth: Aggregations demographic__country_of_residence_at_enrollment: Aggregations demographic__created_datetime: Aggregations demographic__days_to_birth: NumericAggregations demographic__days_to_death: NumericAggregations demographic__demographic_id: Aggregations demographic__education_level: Aggregations demographic__ethnicity: Aggregations demographic__marital_status: Aggregations demographic__occupation_duration_years: NumericAggregations demographic__population_group: Aggregations demographic__race: Aggregations demographic__sex_at_birth: Aggregations demographic__state: Aggregations demographic__submitter_id: Aggregations demographic__updated_datetime: Aggregations demographic__vital_status: Aggregations demographic__year_of_birth: NumericAggregations demographic__year_of_birth_range: Aggregations demographic__year_of_death: NumericAggregations diagnoses__adrenal_hormone: Aggregations diagnoses__age_at_diagnosis: NumericAggregations diagnoses__ajcc_clinical_m: Aggregations diagnoses__ajcc_clinical_n: Aggregations diagnoses__ajcc_clinical_stage: Aggregations diagnoses__ajcc_clinical_t: Aggregations diagnoses__ajcc_pathologic_m: Aggregations diagnoses__ajcc_pathologic_n: Aggregations diagnoses__ajcc_pathologic_stage: Aggregations diagnoses__ajcc_pathologic_t: Aggregations diagnoses__ajcc_serum_tumor_markers: Aggregations diagnoses__ajcc_staging_system_edition: Aggregations diagnoses__ann_arbor_b_symptoms: Aggregations diagnoses__ann_arbor_b_symptoms_described: Aggregations diagnoses__ann_arbor_b_symptoms_described_array: Aggregations diagnoses__ann_arbor_clinical_stage: Aggregations diagnoses__ann_arbor_extranodal_involvement: Aggregations diagnoses__ann_arbor_pathologic_stage: Aggregations diagnoses__annotations__annotation_id: Aggregations diagnoses__annotations__case_id: Aggregations diagnoses__annotations__case_submitter_id: Aggregations diagnoses__annotations__category: Aggregations diagnoses__annotations__classification: Aggregations diagnoses__annotations__created_datetime: Aggregations diagnoses__annotations__creator: Aggregations diagnoses__annotations__entity_id: Aggregations diagnoses__annotations__entity_submitter_id: Aggregations diagnoses__annotations__entity_type: Aggregations diagnoses__annotations__legacy_created_datetime: Aggregations diagnoses__annotations__legacy_updated_datetime: Aggregations diagnoses__annotations__notes: Aggregations diagnoses__annotations__state: Aggregations diagnoses__annotations__status: Aggregations diagnoses__annotations__submitter_id: Aggregations diagnoses__annotations__updated_datetime: Aggregations diagnoses__best_overall_response: Aggregations diagnoses__burkitt_lymphoma_clinical_variant: Aggregations diagnoses__calgb_risk_group: Aggregations diagnoses__cancer_detection_method: Aggregations diagnoses__child_pugh_classification: Aggregations diagnoses__clark_level: Aggregations diagnoses__classification_of_tumor: Aggregations diagnoses__cog_liver_stage: Aggregations diagnoses__cog_neuroblastoma_risk_group: Aggregations diagnoses__cog_renal_stage: Aggregations diagnoses__cog_rhabdomyosarcoma_risk_group: Aggregations diagnoses__contiguous_organ_invaded: Aggregations diagnoses__created_datetime: Aggregations 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Aggregations samples__portions__slides__annotations__created_datetime: Aggregations samples__portions__slides__annotations__creator: Aggregations samples__portions__slides__annotations__entity_id: Aggregations samples__portions__slides__annotations__entity_submitter_id: Aggregations samples__portions__slides__annotations__entity_type: Aggregations samples__portions__slides__annotations__legacy_created_datetime: Aggregations samples__portions__slides__annotations__legacy_updated_datetime: Aggregations samples__portions__slides__annotations__notes: Aggregations samples__portions__slides__annotations__state: Aggregations samples__portions__slides__annotations__status: Aggregations samples__portions__slides__annotations__submitter_id: Aggregations samples__portions__slides__annotations__updated_datetime: Aggregations samples__portions__slides__bone_marrow_malignant_cells: Aggregations samples__portions__slides__created_datetime: Aggregations samples__portions__slides__number_proliferating_cells: NumericAggregations samples__portions__slides__percent_eosinophil_infiltration: NumericAggregations samples__portions__slides__percent_follicular_component: NumericAggregations samples__portions__slides__percent_granulocyte_infiltration: NumericAggregations samples__portions__slides__percent_inflam_infiltration: NumericAggregations samples__portions__slides__percent_lymphocyte_infiltration: NumericAggregations samples__portions__slides__percent_monocyte_infiltration: NumericAggregations samples__portions__slides__percent_necrosis: NumericAggregations samples__portions__slides__percent_neutrophil_infiltration: NumericAggregations samples__portions__slides__percent_normal_cells: NumericAggregations samples__portions__slides__percent_rhabdoid_features: NumericAggregations samples__portions__slides__percent_sarcomatoid_features: NumericAggregations samples__portions__slides__percent_stromal_cells: NumericAggregations samples__portions__slides__percent_tumor_cells: NumericAggregations samples__portions__slides__percent_tumor_nuclei: NumericAggregations samples__portions__slides__prostatic_chips_positive_count: NumericAggregations samples__portions__slides__prostatic_chips_total_count: NumericAggregations samples__portions__slides__prostatic_involvement_percent: NumericAggregations samples__portions__slides__section_location: Aggregations samples__portions__slides__slide_id: Aggregations samples__portions__slides__state: Aggregations samples__portions__slides__submitter_id: Aggregations samples__portions__slides__tissue_microarray_coordinates: Aggregations samples__portions__slides__updated_datetime: Aggregations samples__portions__state: Aggregations samples__portions__submitter_id: Aggregations samples__portions__updated_datetime: Aggregations samples__portions__weight: NumericAggregations samples__preservation_method: Aggregations samples__sample_id: Aggregations samples__sample_ordinal: NumericAggregations samples__sample_type: Aggregations samples__shortest_dimension: NumericAggregations samples__specimen_type: Aggregations samples__state: Aggregations samples__submitter_id: Aggregations samples__time_between_clamping_and_freezing: NumericAggregations samples__time_between_excision_and_freezing: NumericAggregations samples__tissue_collection_type: Aggregations samples__tissue_type: Aggregations samples__tumor_descriptor: Aggregations samples__updated_datetime: Aggregations slide_ids: Aggregations state: Aggregations submitter_aliquot_ids: Aggregations submitter_analyte_ids: Aggregations submitter_diagnosis_ids: Aggregations submitter_id: Aggregations submitter_portion_ids: Aggregations submitter_sample_ids: Aggregations submitter_slide_ids: Aggregations summary__data_categories__data_category: Aggregations summary__data_categories__file_count: NumericAggregations summary__experimental_strategies__experimental_strategy: Aggregations summary__experimental_strategies__file_count: NumericAggregations summary__file_count: NumericAggregations summary__file_size: NumericAggregations tissue_source_site__bcr_id: Aggregations tissue_source_site__code: Aggregations tissue_source_site__name: Aggregations tissue_source_site__project: Aggregations tissue_source_site__tissue_source_site_id: Aggregations updated_datetime: Aggregations } type CaseAnnotation implements Node { id: ID! annotation_id: String case_id: String case_submitter_id: String category: String classification: String created_datetime: String creator: String entity_id: String entity_submitter_id: String entity_type: String legacy_created_datetime: String legacy_updated_datetime: String notes: String state: String status: String submitter_id: String updated_datetime: String score: Int } type CaseAnnotationConnection { pageInfo: PageInfo! edges: [CaseAnnotationEdge]! total: Int! } type CaseAnnotationEdge { node: CaseAnnotation cursor: String! } type CaseAnnotations { hits(offset: Int, sort: [Sort], filters: FiltersArgument, cohort_id: String, case_filters: FiltersArgument, before: String, after: String, first: Int, last: Int): CaseAnnotationConnection } type CaseConnection { pageInfo: PageInfo! edges: [CaseEdge]! total: Int! } type CaseEdge { node: Case cursor: String! } type CaseFile implements Node { id: ID! acl: [String] tags: [String] access: String average_base_quality: Float average_insert_size: Float average_read_length: Float cancer_dna_fraction: Float channel: String chip_id: String chip_position: String contamination: Float contamination_error: Float created_datetime: String data_category: String data_format: String data_type: String error_type: String experimental_strategy: String file_id: String file_name: String file_size: Float genome_doubling: Float imaging_date: String magnification: Float md5sum: String mean_coverage: Float msi_score: Float msi_status: String pairs_on_diff_chr: Float plate_name: String plate_well: String platform: String proc_internal: String proportion_base_mismatch: Float proportion_coverage_10x: Float proportion_coverage_30x: Float proportion_reads_duplicated: Float proportion_reads_mapped: Float proportion_targets_no_coverage: Float read_pair_number: String revision: Float stain_type: String state: String state_comment: String subclonal_genome_fraction: Float submitter_id: String tmb: Float tmb_exonic: Float tmb_nonsynonymous: Float tmb_nonsynonymous_exonic: Float total_reads: Float tumor_ploidy: Float tumor_purity: Float type: String updated_datetime: String wgs_coverage: String score: Int } type CaseFileConnection { pageInfo: PageInfo! edges: [CaseFileEdge]! total: Int! } type CaseFileEdge { node: CaseFile cursor: String! } type CaseFiles { hits(offset: Int, sort: [Sort], filters: FiltersArgument, cohort_id: String, case_filters: FiltersArgument, before: String, after: String, first: Int, last: Int): CaseFileConnection } type CaseSegmentCnv implements Node { id: ID! observations: CaseSegmentCnvObservations chromosome: String cnv_change: String cnv_change_5_category: String end_position: Float length: Float segment_cnv_id: String start_position: Float score: Int } type CaseSegmentCnvConnection { pageInfo: PageInfo! edges: [CaseSegmentCnvEdge]! total: Int! } type CaseSegmentCnvEdge { node: CaseSegmentCnv cursor: String! } type CaseSegmentCnvObservation implements Node { id: ID! sample: CaseSegmentCnvObservationSample variant_calling: CaseSegmentCnvVariantCalling copy_number: Float observation_id: String sample_ploidy_integer: Float src_file_id: String variant_status: String score: Int } type CaseSegmentCnvObservationConnection { pageInfo: PageInfo! edges: [CaseSegmentCnvObservationEdge]! total: Int! } type CaseSegmentCnvObservationEdge { node: CaseSegmentCnvObservation cursor: String! } type CaseSegmentCnvObservationSample { tumor_sample_barcode: String tumor_sample_uuid: String id: String } type CaseSegmentCnvObservations { hits(offset: Int, sort: [Sort], filters: FiltersArgument, cohort_id: String, case_filters: FiltersArgument, before: String, after: String, first: Int, last: Int): CaseSegmentCnvObservationConnection } type CaseSegmentCnvVariantCalling { variant_caller: String id: String } type CaseSegmentCnvs { hits(offset: Int, sort: [Sort], filters: FiltersArgument, cohort_id: String, case_filters: FiltersArgument, before: String, after: String, first: Int, last: Int): CaseSegmentCnvConnection } type CivicAnnotation { gene_id: String variant_id: String id: String } type ClinicalAnnotations { civic: CivicAnnotation id: String } type ConsequenceTranscript { annotation: TranscriptAnnotation gene: SsmGene aa_change: String aa_end: Float aa_start: Float consequence_type: String is_canonical: Boolean ref_seq_accession: String transcript_id: String id: String } type CreateCaseSet { set_id: String size: Int time: Float set_type: String intent: String } type CreateExploreSet { case(input: CreateSetInput): CreateCaseSet gene(input: CreateSetInput): CreateGeneSet ssm(input: CreateSetInput): CreateSsmSet } type CreateGeneSet { set_id: String size: Int time: Float set_type: String intent: String } type CreateRepositoryCaseSet { set_id: String size: Int time: Float set_type: String intent: String } type CreateRepositoryFileSet { set_id: String size: Int time: Float set_type: String intent: String } type CreateRepositorySet { case(input: CreateSetInput): CreateRepositoryCaseSet file(input: CreateSetInput): CreateRepositoryFileSet } type CreateSet { explore: CreateExploreSet repository: CreateRepositorySet } input CreateSetInput { filters: FiltersArgument! cohort_id: String case_filters: FiltersArgument size: Int sort: [Sort] score: String set_id: String set_type: SetType intent: Intent } type CreateSsmSet { set_id: String size: Int time: Float set_type: String intent: String } type DataCategories { case_count: Float data_category: String file_count: Float id: String } type Demographic { age_at_index: Float age_is_obfuscated: String cause_of_death: String cause_of_death_source: String country_of_birth: String country_of_residence_at_enrollment: String created_datetime: String days_to_birth: Float days_to_death: Float demographic_id: String education_level: String ethnicity: String marital_status: String occupation_duration_years: Float population_group: String race: String sex_at_birth: String state: String submitter_id: String updated_datetime: String vital_status: String year_of_birth: Float year_of_birth_range: String year_of_death: Float id: String } type Diagnoses { hits(offset: Int, sort: [Sort], filters: FiltersArgument, cohort_id: String, case_filters: FiltersArgument, before: String, after: String, first: Int, last: Int): DiagnosisConnection } type Diagnosis implements Node { id: ID! treatments: Treatments adrenal_hormone: String age_at_diagnosis: Float ajcc_clinical_m: String ajcc_clinical_n: String ajcc_clinical_stage: String ajcc_clinical_t: String ajcc_pathologic_m: String ajcc_pathologic_n: String ajcc_pathologic_stage: String ajcc_pathologic_t: String ajcc_serum_tumor_markers: String ajcc_staging_system_edition: String ann_arbor_b_symptoms: String ann_arbor_b_symptoms_described: String ann_arbor_b_symptoms_described_array: String ann_arbor_clinical_stage: String ann_arbor_extranodal_involvement: String ann_arbor_pathologic_stage: String best_overall_response: String burkitt_lymphoma_clinical_variant: String calgb_risk_group: String cancer_detection_method: String child_pugh_classification: String clark_level: String classification_of_tumor: String cog_liver_stage: String cog_neuroblastoma_risk_group: String cog_renal_stage: String cog_rhabdomyosarcoma_risk_group: String contiguous_organ_invaded: String created_datetime: String days_to_best_overall_response: Float days_to_diagnosis: Float days_to_last_follow_up: Float days_to_last_known_disease_status: Float days_to_recurrence: Float diagnosis_id: String diagnosis_is_primary_disease: String double_expressor_lymphoma: String double_hit_lymphoma: String eln_risk_classification: String enneking_msts_grade: String enneking_msts_metastasis: String enneking_msts_stage: String enneking_msts_tumor_site: String ensat_clinical_m: String ensat_pathologic_n: String ensat_pathologic_stage: String ensat_pathologic_t: String esophageal_columnar_dysplasia_degree: String esophageal_columnar_metaplasia_present: String fab_morphology_code: String figo_stage: String figo_staging_edition_year: String first_symptom_longest_duration: String first_symptom_prior_to_diagnosis: String gastric_esophageal_junction_involvement: String gleason_grade_group: String gleason_grade_tertiary: String gleason_patterns_percent: Float gleason_score: Float goblet_cells_columnar_mucosa_present: String icd_10_code: String igcccg_stage: String inpc_grade: String inpc_histologic_group: String inrg_stage: String inss_stage: String international_prognostic_index: String irs_group: String irs_stage: String ishak_fibrosis_score: String iss_stage: String last_known_disease_status: String laterality: String margin_distance: Float margins_involved_site: String masaoka_stage: String max_tumor_bulk_site: String medulloblastoma_molecular_classification: String melanoma_known_primary: String metastasis_at_diagnosis: String method_of_diagnosis: String mitosis_karyorrhexis_index: String morphology: String ovarian_specimen_status: String ovarian_surface_involvement: String pediatric_kidney_staging: String peritoneal_fluid_cytological_status: String primary_diagnosis: String primary_gleason_grade: String prior_malignancy: String prior_treatment: String progression_or_recurrence: String residual_disease: String satellite_nodule_present: String secondary_gleason_grade: String site_of_resection_or_biopsy: String sites_of_involvement: String sites_of_involvement_count: Float state: String submitter_id: String supratentorial_localization: String synchronous_malignancy: String tissue_or_organ_of_origin: String tumor_burden: Float tumor_confined_to_organ_of_origin: String tumor_depth: Float tumor_focality: String tumor_grade: String tumor_grade_category: String tumor_of_origin: String tumor_regression_grade: String uicc_clinical_m: String uicc_clinical_n: String uicc_clinical_stage: String uicc_clinical_t: String uicc_pathologic_m: String uicc_pathologic_n: String uicc_pathologic_stage: String uicc_pathologic_t: String uicc_staging_system_edition: String ulceration_indicator: String updated_datetime: String weiss_assessment_findings: String weiss_assessment_score: String who_cns_grade: String who_nte_grade: String wilms_tumor_histologic_subtype: String year_of_diagnosis: Float score: Int } type DiagnosisConnection { pageInfo: PageInfo! edges: [DiagnosisEdge]! total: Int! } type DiagnosisEdge { node: Diagnosis cursor: String! } type Domains { description: String end: Float gff_source: String hit_name: String interpro_id: String start: Float id: String } type DownstreamAnalyses { hits(offset: Int, sort: [Sort], filters: FiltersArgument, cohort_id: String, case_filters: FiltersArgument, before: String, after: String, first: Int, last: Int): DownstreamAnalysisConnection } type DownstreamAnalysis implements Node { id: ID! output_files: OutputFiles analysis_id: String analysis_type: String created_datetime: String state: String submitter_id: String updated_datetime: String workflow_end_datetime: String workflow_link: String workflow_start_datetime: String workflow_type: String workflow_version: String score: Int } type DownstreamAnalysisConnection { pageInfo: PageInfo! edges: [DownstreamAnalysisEdge]! total: Int! } type DownstreamAnalysisEdge { node: DownstreamAnalysis cursor: String! } type ECase implements Node { id: ID! aliquot_ids: String analyte_ids: String case_autocomplete: String case_id: String consent_type: String created_datetime: String days_to_consent: Float days_to_lost_to_followup: Float diagnosis_ids: String disease_type: String index_date: String lost_to_followup: String portion_ids: String primary_site: String sample_ids: String slide_ids: String state: String submitter_aliquot_ids: String submitter_analyte_ids: String submitter_diagnosis_ids: String submitter_id: String submitter_portion_ids: String submitter_sample_ids: String submitter_slide_ids: String updated_datetime: String available_variation_data: [String] demographic: EDemographic diagnoses: EDiagnoses exposures: EExposures family_histories: EFamilyHistories gene: EGenes project: Project segment_cnvs: CaseSegmentCnvs summary: Summary tissue_source_site: ETissueSourceSite score: Int } type ECaseAggregations { aliquot_ids: Aggregations analyte_ids: Aggregations annotations__annotation_id: Aggregations annotations__case_id: Aggregations annotations__case_submitter_id: Aggregations annotations__category: Aggregations annotations__classification: Aggregations annotations__created_datetime: Aggregations annotations__creator: Aggregations annotations__entity_id: Aggregations annotations__entity_submitter_id: Aggregations annotations__entity_type: Aggregations annotations__legacy_created_datetime: Aggregations annotations__legacy_updated_datetime: Aggregations annotations__notes: Aggregations annotations__state: Aggregations annotations__status: Aggregations annotations__submitter_id: Aggregations annotations__updated_datetime: Aggregations available_variation_data: Aggregations case_autocomplete: Aggregations case_id: Aggregations consent_type: Aggregations created_datetime: Aggregations days_to_consent: NumericAggregations days_to_lost_to_followup: NumericAggregations demographic__age_at_index: NumericAggregations demographic__age_is_obfuscated: Aggregations demographic__cause_of_death: Aggregations demographic__cause_of_death_source: Aggregations demographic__country_of_birth: Aggregations demographic__country_of_residence_at_enrollment: Aggregations demographic__created_datetime: Aggregations demographic__days_to_birth: NumericAggregations demographic__days_to_death: NumericAggregations demographic__demographic_id: Aggregations demographic__education_level: Aggregations demographic__ethnicity: Aggregations demographic__marital_status: Aggregations demographic__occupation_duration_years: NumericAggregations demographic__population_group: Aggregations demographic__race: Aggregations demographic__sex_at_birth: Aggregations demographic__state: Aggregations demographic__submitter_id: Aggregations demographic__updated_datetime: Aggregations demographic__vital_status: Aggregations demographic__year_of_birth: NumericAggregations demographic__year_of_birth_range: Aggregations demographic__year_of_death: NumericAggregations diagnoses__adrenal_hormone: Aggregations diagnoses__age_at_diagnosis: NumericAggregations diagnoses__ajcc_clinical_m: Aggregations diagnoses__ajcc_clinical_n: Aggregations diagnoses__ajcc_clinical_stage: Aggregations diagnoses__ajcc_clinical_t: Aggregations diagnoses__ajcc_pathologic_m: Aggregations diagnoses__ajcc_pathologic_n: Aggregations diagnoses__ajcc_pathologic_stage: Aggregations diagnoses__ajcc_pathologic_t: Aggregations diagnoses__ajcc_serum_tumor_markers: Aggregations diagnoses__ajcc_staging_system_edition: Aggregations diagnoses__ann_arbor_b_symptoms: Aggregations diagnoses__ann_arbor_b_symptoms_described: Aggregations diagnoses__ann_arbor_b_symptoms_described_array: Aggregations diagnoses__ann_arbor_clinical_stage: Aggregations diagnoses__ann_arbor_extranodal_involvement: Aggregations diagnoses__ann_arbor_pathologic_stage: Aggregations diagnoses__annotations__annotation_id: Aggregations diagnoses__annotations__case_id: Aggregations diagnoses__annotations__case_submitter_id: Aggregations diagnoses__annotations__category: Aggregations diagnoses__annotations__classification: Aggregations diagnoses__annotations__created_datetime: Aggregations diagnoses__annotations__creator: Aggregations diagnoses__annotations__entity_id: Aggregations diagnoses__annotations__entity_submitter_id: Aggregations diagnoses__annotations__entity_type: Aggregations diagnoses__annotations__legacy_created_datetime: Aggregations diagnoses__annotations__legacy_updated_datetime: Aggregations diagnoses__annotations__notes: Aggregations diagnoses__annotations__state: Aggregations diagnoses__annotations__status: Aggregations diagnoses__annotations__submitter_id: Aggregations diagnoses__annotations__updated_datetime: Aggregations diagnoses__best_overall_response: Aggregations diagnoses__burkitt_lymphoma_clinical_variant: Aggregations diagnoses__calgb_risk_group: Aggregations diagnoses__cancer_detection_method: Aggregations diagnoses__child_pugh_classification: Aggregations diagnoses__clark_level: Aggregations diagnoses__classification_of_tumor: Aggregations diagnoses__cog_liver_stage: Aggregations diagnoses__cog_neuroblastoma_risk_group: Aggregations diagnoses__cog_renal_stage: Aggregations diagnoses__cog_rhabdomyosarcoma_risk_group: Aggregations diagnoses__contiguous_organ_invaded: Aggregations diagnoses__created_datetime: Aggregations diagnoses__days_to_best_overall_response: NumericAggregations diagnoses__days_to_diagnosis: NumericAggregations diagnoses__days_to_last_follow_up: NumericAggregations diagnoses__days_to_last_known_disease_status: NumericAggregations diagnoses__days_to_recurrence: NumericAggregations diagnoses__diagnosis_id: Aggregations diagnoses__diagnosis_is_primary_disease: Aggregations diagnoses__double_expressor_lymphoma: Aggregations diagnoses__double_hit_lymphoma: Aggregations diagnoses__eln_risk_classification: Aggregations diagnoses__enneking_msts_grade: Aggregations diagnoses__enneking_msts_metastasis: Aggregations diagnoses__enneking_msts_stage: Aggregations diagnoses__enneking_msts_tumor_site: Aggregations diagnoses__ensat_clinical_m: Aggregations diagnoses__ensat_pathologic_n: Aggregations diagnoses__ensat_pathologic_stage: Aggregations diagnoses__ensat_pathologic_t: Aggregations diagnoses__esophageal_columnar_dysplasia_degree: Aggregations diagnoses__esophageal_columnar_metaplasia_present: Aggregations diagnoses__fab_morphology_code: Aggregations diagnoses__figo_stage: Aggregations diagnoses__figo_staging_edition_year: Aggregations diagnoses__first_symptom_longest_duration: Aggregations diagnoses__first_symptom_prior_to_diagnosis: Aggregations diagnoses__gastric_esophageal_junction_involvement: Aggregations diagnoses__gleason_grade_group: Aggregations diagnoses__gleason_grade_tertiary: Aggregations diagnoses__gleason_patterns_percent: NumericAggregations diagnoses__gleason_score: NumericAggregations diagnoses__goblet_cells_columnar_mucosa_present: Aggregations diagnoses__icd_10_code: Aggregations diagnoses__igcccg_stage: Aggregations diagnoses__inpc_grade: Aggregations diagnoses__inpc_histologic_group: Aggregations diagnoses__inrg_stage: Aggregations diagnoses__inss_stage: Aggregations diagnoses__international_prognostic_index: Aggregations diagnoses__irs_group: Aggregations diagnoses__irs_stage: Aggregations diagnoses__ishak_fibrosis_score: Aggregations diagnoses__iss_stage: Aggregations diagnoses__last_known_disease_status: Aggregations diagnoses__laterality: Aggregations diagnoses__margin_distance: NumericAggregations diagnoses__margins_involved_site: Aggregations diagnoses__masaoka_stage: Aggregations diagnoses__max_tumor_bulk_site: Aggregations diagnoses__medulloblastoma_molecular_classification: Aggregations diagnoses__melanoma_known_primary: Aggregations diagnoses__metastasis_at_diagnosis: Aggregations diagnoses__method_of_diagnosis: Aggregations diagnoses__mitosis_karyorrhexis_index: Aggregations diagnoses__morphology: Aggregations diagnoses__ovarian_specimen_status: Aggregations diagnoses__ovarian_surface_involvement: Aggregations diagnoses__pathology_details__additional_pathology_findings: Aggregations diagnoses__pathology_details__anaplasia_present: Aggregations diagnoses__pathology_details__anaplasia_present_type: Aggregations diagnoses__pathology_details__bone_marrow_malignant_cells: Aggregations diagnoses__pathology_details__breslow_thickness: NumericAggregations diagnoses__pathology_details__breslow_thickness_category: Aggregations diagnoses__pathology_details__circumferential_resection_margin: NumericAggregations diagnoses__pathology_details__columnar_mucosa_present: Aggregations diagnoses__pathology_details__consistent_pathology_review: Aggregations diagnoses__pathology_details__created_datetime: Aggregations diagnoses__pathology_details__days_to_pathology_detail: NumericAggregations diagnoses__pathology_details__dysplasia_degree: Aggregations diagnoses__pathology_details__dysplasia_type: Aggregations diagnoses__pathology_details__epithelioid_cell_percent_range: Aggregations diagnoses__pathology_details__extracapsular_extension: Aggregations diagnoses__pathology_details__extracapsular_extension_present: Aggregations diagnoses__pathology_details__extranodal_extension: Aggregations diagnoses__pathology_details__extraocular_nodule_size: Aggregations diagnoses__pathology_details__extrascleral_extension_present: Aggregations diagnoses__pathology_details__extrathyroid_extension: Aggregations diagnoses__pathology_details__greatest_tumor_dimension: NumericAggregations diagnoses__pathology_details__gross_tumor_weight: NumericAggregations diagnoses__pathology_details__histologic_progression_type: Aggregations diagnoses__pathology_details__intratubular_germ_cell_neoplasia_present: Aggregations diagnoses__pathology_details__largest_extrapelvic_peritoneal_focus: Aggregations diagnoses__pathology_details__lymph_node_dissection_method: Aggregations diagnoses__pathology_details__lymph_node_dissection_site: Aggregations diagnoses__pathology_details__lymph_node_involved_site: Aggregations diagnoses__pathology_details__lymph_node_involvement: Aggregations diagnoses__pathology_details__lymph_nodes_positive: NumericAggregations diagnoses__pathology_details__lymph_nodes_removed: Aggregations diagnoses__pathology_details__lymph_nodes_tested: NumericAggregations diagnoses__pathology_details__lymphatic_invasion_present: Aggregations diagnoses__pathology_details__margin_status: Aggregations diagnoses__pathology_details__measurement_type: Aggregations diagnoses__pathology_details__measurement_unit: Aggregations diagnoses__pathology_details__metaplasia_present: Aggregations diagnoses__pathology_details__micrometastasis_present: Aggregations diagnoses__pathology_details__morphologic_architectural_pattern: Aggregations diagnoses__pathology_details__necrosis_percent: NumericAggregations diagnoses__pathology_details__necrosis_present: Aggregations diagnoses__pathology_details__non_nodal_regional_disease: Aggregations diagnoses__pathology_details__non_nodal_tumor_deposits: Aggregations diagnoses__pathology_details__number_proliferating_cells: NumericAggregations 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Aggregations samples__portions__annotations__updated_datetime: Aggregations samples__portions__center__center_id: Aggregations samples__portions__center__center_type: Aggregations samples__portions__center__code: Aggregations samples__portions__center__name: Aggregations samples__portions__center__namespace: Aggregations samples__portions__center__short_name: Aggregations samples__portions__created_datetime: Aggregations samples__portions__creation_datetime: NumericAggregations samples__portions__is_ffpe: Aggregations samples__portions__portion_id: Aggregations samples__portions__portion_number: Aggregations samples__portions__slides__annotations__annotation_id: Aggregations samples__portions__slides__annotations__case_id: Aggregations samples__portions__slides__annotations__case_submitter_id: Aggregations samples__portions__slides__annotations__category: Aggregations samples__portions__slides__annotations__classification: Aggregations samples__portions__slides__annotations__created_datetime: Aggregations samples__portions__slides__annotations__creator: Aggregations samples__portions__slides__annotations__entity_id: Aggregations samples__portions__slides__annotations__entity_submitter_id: Aggregations samples__portions__slides__annotations__entity_type: Aggregations samples__portions__slides__annotations__legacy_created_datetime: Aggregations samples__portions__slides__annotations__legacy_updated_datetime: Aggregations samples__portions__slides__annotations__notes: Aggregations samples__portions__slides__annotations__state: Aggregations samples__portions__slides__annotations__status: Aggregations samples__portions__slides__annotations__submitter_id: Aggregations samples__portions__slides__annotations__updated_datetime: Aggregations samples__portions__slides__bone_marrow_malignant_cells: Aggregations samples__portions__slides__created_datetime: Aggregations samples__portions__slides__number_proliferating_cells: NumericAggregations samples__portions__slides__percent_eosinophil_infiltration: NumericAggregations samples__portions__slides__percent_follicular_component: NumericAggregations samples__portions__slides__percent_granulocyte_infiltration: NumericAggregations samples__portions__slides__percent_inflam_infiltration: NumericAggregations samples__portions__slides__percent_lymphocyte_infiltration: NumericAggregations samples__portions__slides__percent_monocyte_infiltration: NumericAggregations samples__portions__slides__percent_necrosis: NumericAggregations samples__portions__slides__percent_neutrophil_infiltration: NumericAggregations samples__portions__slides__percent_normal_cells: NumericAggregations samples__portions__slides__percent_rhabdoid_features: NumericAggregations samples__portions__slides__percent_sarcomatoid_features: NumericAggregations samples__portions__slides__percent_stromal_cells: NumericAggregations samples__portions__slides__percent_tumor_cells: NumericAggregations samples__portions__slides__percent_tumor_nuclei: NumericAggregations samples__portions__slides__prostatic_chips_positive_count: NumericAggregations samples__portions__slides__prostatic_chips_total_count: NumericAggregations samples__portions__slides__prostatic_involvement_percent: NumericAggregations samples__portions__slides__section_location: Aggregations samples__portions__slides__slide_id: Aggregations samples__portions__slides__state: Aggregations samples__portions__slides__submitter_id: Aggregations samples__portions__slides__tissue_microarray_coordinates: Aggregations samples__portions__slides__updated_datetime: Aggregations samples__portions__state: Aggregations samples__portions__submitter_id: Aggregations samples__portions__updated_datetime: Aggregations samples__portions__weight: NumericAggregations samples__preservation_method: Aggregations samples__sample_id: Aggregations samples__sample_ordinal: NumericAggregations samples__sample_type: Aggregations samples__shortest_dimension: NumericAggregations samples__specimen_type: Aggregations samples__state: Aggregations samples__submitter_id: Aggregations samples__time_between_clamping_and_freezing: NumericAggregations samples__time_between_excision_and_freezing: NumericAggregations samples__tissue_collection_type: Aggregations samples__tissue_type: Aggregations samples__tumor_descriptor: Aggregations samples__updated_datetime: Aggregations segment_cnv__chromosome: Aggregations segment_cnv__cnv_change: Aggregations segment_cnv__cnv_change_5_category: Aggregations segment_cnv__end_position: NumericAggregations segment_cnv__length: NumericAggregations segment_cnv__observation__copy_number: NumericAggregations segment_cnv__observation__observation_id: Aggregations segment_cnv__observation__sample__tumor_sample_barcode: Aggregations segment_cnv__observation__sample__tumor_sample_uuid: Aggregations segment_cnv__observation__sample_ploidy_integer: NumericAggregations segment_cnv__observation__src_file_id: Aggregations segment_cnv__observation__variant_calling__variant_caller: Aggregations segment_cnv__observation__variant_status: Aggregations segment_cnv__segment_cnv_id: Aggregations segment_cnv__start_position: NumericAggregations slide_ids: Aggregations state: Aggregations submitter_aliquot_ids: Aggregations submitter_analyte_ids: Aggregations submitter_diagnosis_ids: Aggregations submitter_id: Aggregations submitter_portion_ids: Aggregations submitter_sample_ids: Aggregations submitter_slide_ids: Aggregations summary__data_categories__data_category: Aggregations summary__data_categories__file_count: NumericAggregations summary__experimental_strategies__experimental_strategy: Aggregations summary__experimental_strategies__file_count: NumericAggregations summary__file_count: NumericAggregations summary__file_size: NumericAggregations tissue_source_site__bcr_id: Aggregations tissue_source_site__code: Aggregations tissue_source_site__name: Aggregations tissue_source_site__project: Aggregations tissue_source_site__tissue_source_site_id: Aggregations updated_datetime: Aggregations } type ECaseConnection { pageInfo: PageInfo! edges: [ECaseEdge]! total: Int! } type ECaseEdge { node: ECase cursor: String! } type EDemographic { age_at_index: Float age_is_obfuscated: String cause_of_death: String cause_of_death_source: String country_of_birth: String country_of_residence_at_enrollment: String created_datetime: String days_to_birth: Float days_to_death: Float demographic_id: String education_level: String ethnicity: String marital_status: String occupation_duration_years: Float population_group: String race: String sex_at_birth: String state: String submitter_id: String updated_datetime: String vital_status: String year_of_birth: Float year_of_birth_range: String year_of_death: Float id: String } type EDiagnoses { hits(offset: Int, sort: [Sort], filters: FiltersArgument, cohort_id: String, case_filters: FiltersArgument, before: String, after: String, first: Int, last: Int): EDiagnosisConnection } type EDiagnosis implements Node { id: ID! treatments: ETreatments adrenal_hormone: String age_at_diagnosis: Float ajcc_clinical_m: String ajcc_clinical_n: String ajcc_clinical_stage: String ajcc_clinical_t: String ajcc_pathologic_m: String ajcc_pathologic_n: String ajcc_pathologic_stage: String ajcc_pathologic_t: String ajcc_serum_tumor_markers: String ajcc_staging_system_edition: String ann_arbor_b_symptoms: String ann_arbor_b_symptoms_described: String ann_arbor_b_symptoms_described_array: String ann_arbor_clinical_stage: String ann_arbor_extranodal_involvement: String ann_arbor_pathologic_stage: String best_overall_response: String burkitt_lymphoma_clinical_variant: String calgb_risk_group: String cancer_detection_method: String child_pugh_classification: String clark_level: String classification_of_tumor: String cog_liver_stage: String cog_neuroblastoma_risk_group: String cog_renal_stage: String cog_rhabdomyosarcoma_risk_group: String contiguous_organ_invaded: String created_datetime: String days_to_best_overall_response: Float days_to_diagnosis: Float days_to_last_follow_up: Float days_to_last_known_disease_status: Float days_to_recurrence: Float diagnosis_id: String diagnosis_is_primary_disease: String double_expressor_lymphoma: String double_hit_lymphoma: String eln_risk_classification: String enneking_msts_grade: String enneking_msts_metastasis: String enneking_msts_stage: String enneking_msts_tumor_site: String ensat_clinical_m: String ensat_pathologic_n: String ensat_pathologic_stage: String ensat_pathologic_t: String esophageal_columnar_dysplasia_degree: String esophageal_columnar_metaplasia_present: String fab_morphology_code: String figo_stage: String figo_staging_edition_year: String first_symptom_longest_duration: String first_symptom_prior_to_diagnosis: String gastric_esophageal_junction_involvement: String gleason_grade_group: String gleason_grade_tertiary: String gleason_patterns_percent: Float gleason_score: Float goblet_cells_columnar_mucosa_present: String icd_10_code: String igcccg_stage: String inpc_grade: String inpc_histologic_group: String inrg_stage: String inss_stage: String international_prognostic_index: String irs_group: String irs_stage: String ishak_fibrosis_score: String iss_stage: String last_known_disease_status: String laterality: String margin_distance: Float margins_involved_site: String masaoka_stage: String max_tumor_bulk_site: String medulloblastoma_molecular_classification: String melanoma_known_primary: String metastasis_at_diagnosis: String method_of_diagnosis: String mitosis_karyorrhexis_index: String morphology: String ovarian_specimen_status: String ovarian_surface_involvement: String pediatric_kidney_staging: String peritoneal_fluid_cytological_status: String primary_diagnosis: String primary_gleason_grade: String prior_malignancy: String prior_treatment: String progression_or_recurrence: String residual_disease: String satellite_nodule_present: String secondary_gleason_grade: String site_of_resection_or_biopsy: String sites_of_involvement: String sites_of_involvement_count: Float state: String submitter_id: String supratentorial_localization: String synchronous_malignancy: String tissue_or_organ_of_origin: String tumor_burden: Float tumor_confined_to_organ_of_origin: String tumor_depth: Float tumor_focality: String tumor_grade: String tumor_grade_category: String tumor_of_origin: String tumor_regression_grade: String uicc_clinical_m: String uicc_clinical_n: String uicc_clinical_stage: String uicc_clinical_t: String uicc_pathologic_m: String uicc_pathologic_n: String uicc_pathologic_stage: String uicc_pathologic_t: String uicc_staging_system_edition: String ulceration_indicator: String updated_datetime: String weiss_assessment_findings: String weiss_assessment_score: String who_cns_grade: String who_nte_grade: String wilms_tumor_histologic_subtype: String year_of_diagnosis: Float score: Int } type EDiagnosisConnection { pageInfo: PageInfo! edges: [EDiagnosisEdge]! total: Int! } type EDiagnosisEdge { node: EDiagnosis cursor: String! } type EExposure implements Node { id: ID! age_at_last_exposure: Float age_at_onset: Float alcohol_days_per_week: Float alcohol_drinks_per_day: Float alcohol_frequency: String alcohol_history: String alcohol_intensity: String alcohol_type: String asbestos_exposure_type: String chemical_exposure_type: String cigarettes_per_day: Float created_datetime: String environmental_tobacco_smoke_exposure: String exposure_duration: String exposure_duration_hrs_per_day: Float exposure_duration_years: Float exposure_id: String exposure_source: String exposure_type: String occupation_duration_years: Float occupation_type: String pack_years_smoked: Float parent_with_radiation_exposure: String secondhand_smoke_as_child: String smoking_frequency: String state: String submitter_id: String time_between_waking_and_first_smoke: String tobacco_smoking_onset_year: Float tobacco_smoking_quit_year: Float tobacco_smoking_status: String type_of_smoke_exposure: String type_of_tobacco_used: String updated_datetime: String use_per_day: Float score: Int } type EExposureConnection { pageInfo: PageInfo! edges: [EExposureEdge]! total: Int! } type EExposureEdge { node: EExposure cursor: String! } type EExposures { hits(offset: Int, sort: [Sort], filters: FiltersArgument, cohort_id: String, case_filters: FiltersArgument, before: String, after: String, first: Int, last: Int): EExposureConnection } type EFamilyHistories { hits(offset: Int, sort: [Sort], filters: FiltersArgument, cohort_id: String, case_filters: FiltersArgument, before: String, after: String, first: Int, last: Int): EFamilyHistoryConnection } type EFamilyHistory implements Node { id: ID! created_datetime: String family_history_id: String relationship_age_at_diagnosis: Float relationship_primary_diagnosis: String relationship_sex_at_birth: String relationship_type: String relative_deceased: String relative_smoker: String relative_with_cancer_history: String relatives_with_cancer_history_count: Float state: String submitter_id: String updated_datetime: String score: Int } type EFamilyHistoryConnection { pageInfo: PageInfo! edges: [EFamilyHistoryEdge]! total: Int! } type EFamilyHistoryEdge { node: EFamilyHistory cursor: String! } type EGene implements Node { id: ID! biotype: String gene_id: String is_cancer_gene_census: Boolean symbol: String score: Int } type EGeneConnection { pageInfo: PageInfo! edges: [EGeneEdge]! total: Int! } type EGeneEdge { node: EGene cursor: String! } type EGenes { hits(offset: Int, sort: [Sort], filters: FiltersArgument, cohort_id: String, case_filters: FiltersArgument, before: String, after: String, first: Int, last: Int): EGeneConnection } type ETissueSourceSite { bcr_id: String code: String name: String project: String tissue_source_site_id: String id: String } type ETreatment implements Node { id: ID! chemo_concurrent_to_radiation: String clinical_trial_indicator: String course_number: Float created_datetime: String days_to_treatment_end: Float days_to_treatment_start: Float drug_category: String embolic_agent: String initial_disease_status: String lesions_treated_number: Float margin_distance: Float margin_status: String margins_involved_site: String number_of_cycles: Float number_of_fractions: Float prescribed_dose: Float prescribed_dose_units: String pretreatment: String protocol_identifier: String radiosensitizing_agent: String reason_treatment_ended: String reason_treatment_not_given: String regimen_or_line_of_therapy: String residual_disease: String route_of_administration: String state: String submitter_id: String therapeutic_agents: String therapeutic_levels_achieved: String therapeutic_target_level: String timepoint_category: String treatment_anatomic_sites: String treatment_dose: Float treatment_dose_max: Float treatment_dose_units: String treatment_duration: Float treatment_effect: String treatment_effect_indicator: String treatment_frequency: String treatment_id: String treatment_intent_type: String treatment_or_therapy: String treatment_outcome: String treatment_outcome_duration: Float treatment_type: String treatment_type_administered: String updated_datetime: String score: Int } type ETreatmentConnection { pageInfo: PageInfo! edges: [ETreatmentEdge]! total: Int! } type ETreatmentEdge { node: ETreatment cursor: String! } type ETreatments { hits(offset: Int, sort: [Sort], filters: FiltersArgument, cohort_id: String, case_filters: FiltersArgument, before: String, after: String, first: Int, last: Int): ETreatmentConnection } type Exon { cdna_coding_end: Float cdna_coding_start: Float cdna_end: Float cdna_start: Float end: Float end_phase: Float genomic_coding_end: Float genomic_coding_start: Float start: Float start_phase: Float id: String } type ExperimentalStrategies { case_count: Float experimental_strategy: String file_count: Float id: String } type Explore { cases: ExploreCases genes: Genes ssms: Ssms cnvs: CNVs segment_cnvs: SegmentCnvs } type ExploreCases { facets(filters: FiltersArgument, facets: [String]!): JSONString aggregations(filters: FiltersArgument, cohort_id: String, case_filters: FiltersArgument, aggregations_filter_themselves: Boolean = true): ECaseAggregations hits(score: String, query: String, offset: Int, sort: [Sort], filters: FiltersArgument, cohort_id: String, case_filters: FiltersArgument, before: String, after: String, first: Int, last: Int): ECaseConnection } type Exposure implements Node { id: ID! age_at_last_exposure: Float age_at_onset: Float alcohol_days_per_week: Float alcohol_drinks_per_day: Float alcohol_frequency: String alcohol_history: String alcohol_intensity: String alcohol_type: String asbestos_exposure_type: String chemical_exposure_type: String cigarettes_per_day: Float created_datetime: String environmental_tobacco_smoke_exposure: String exposure_duration: String exposure_duration_hrs_per_day: Float exposure_duration_years: Float exposure_id: String exposure_source: String exposure_type: String occupation_duration_years: Float occupation_type: String pack_years_smoked: Float parent_with_radiation_exposure: String secondhand_smoke_as_child: String smoking_frequency: String state: String submitter_id: String time_between_waking_and_first_smoke: String tobacco_smoking_onset_year: Float tobacco_smoking_quit_year: Float tobacco_smoking_status: String type_of_smoke_exposure: String type_of_tobacco_used: String updated_datetime: String use_per_day: Float score: Int } type ExposureConnection { pageInfo: PageInfo! edges: [ExposureEdge]! total: Int! } type ExposureEdge { node: Exposure cursor: String! } type Exposures { hits(offset: Int, sort: [Sort], filters: FiltersArgument, cohort_id: String, case_filters: FiltersArgument, before: String, after: String, first: Int, last: Int): ExposureConnection } type ExternalDbIds { entrez_gene: [String] hgnc: [String] omim_gene: [String] uniprotkb_swissprot: [String] id: String } type FamilyHistories { hits(offset: Int, sort: [Sort], filters: FiltersArgument, cohort_id: String, case_filters: FiltersArgument, before: String, after: String, first: Int, last: Int): FamilyHistoryConnection } type FamilyHistory implements Node { id: ID! created_datetime: String family_history_id: String relationship_age_at_diagnosis: Float relationship_primary_diagnosis: String relationship_sex_at_birth: String relationship_type: String relative_deceased: String relative_smoker: String relative_with_cancer_history: String relatives_with_cancer_history_count: Float state: String submitter_id: String updated_datetime: String score: Int } type FamilyHistoryConnection { pageInfo: PageInfo! edges: [FamilyHistoryEdge]! total: Int! } type FamilyHistoryEdge { node: FamilyHistory cursor: String! } type File implements Node { id: ID! access: String average_base_quality: Float average_insert_size: Float average_read_length: Float cancer_dna_fraction: Float channel: String chip_id: String chip_position: String contamination: Float contamination_error: Float created_datetime: String data_category: String data_format: String data_type: String error_type: String experimental_strategy: String file_autocomplete: String file_id: String file_name: String file_size: Float genome_doubling: Float imaging_date: String magnification: Float md5sum: String mean_coverage: Float msi_score: Float msi_status: String pairs_on_diff_chr: Float plate_name: String plate_well: String platform: String proc_internal: String proportion_base_mismatch: Float proportion_coverage_10x: Float proportion_coverage_30x: Float proportion_reads_duplicated: Float proportion_reads_mapped: Float proportion_targets_no_coverage: Float read_pair_number: String revision: Float stain_type: String state: String state_comment: String subclonal_genome_fraction: Float submitter_id: String tmb: Float tmb_exonic: Float tmb_nonsynonymous: Float tmb_nonsynonymous_exonic: Float total_reads: Float tumor_ploidy: Float tumor_purity: Float type: String updated_datetime: String wgs_coverage: String acl: [String] tags: [String] analysis: FileAnalysis annotations: FileAnnotations archive: Archive cases: FileCases center: FileCenter associated_entities: AssociatedEntities downstream_analyses: DownstreamAnalyses index_files: IndexFiles metadata_files: MetadataFiles score: Int } type FileAggregations { access: Aggregations acl: Aggregations analysis__analysis_id: Aggregations analysis__analysis_type: Aggregations analysis__created_datetime: Aggregations analysis__input_files__access: Aggregations analysis__input_files__average_base_quality: NumericAggregations analysis__input_files__average_insert_size: NumericAggregations analysis__input_files__average_read_length: NumericAggregations analysis__input_files__cancer_dna_fraction: NumericAggregations analysis__input_files__channel: Aggregations analysis__input_files__chip_id: Aggregations analysis__input_files__chip_position: Aggregations analysis__input_files__contamination: NumericAggregations analysis__input_files__contamination_error: NumericAggregations analysis__input_files__created_datetime: Aggregations analysis__input_files__data_category: Aggregations analysis__input_files__data_format: Aggregations analysis__input_files__data_type: Aggregations analysis__input_files__error_type: Aggregations analysis__input_files__experimental_strategy: Aggregations analysis__input_files__file_id: Aggregations analysis__input_files__file_name: Aggregations analysis__input_files__file_size: NumericAggregations analysis__input_files__genome_doubling: NumericAggregations analysis__input_files__imaging_date: Aggregations analysis__input_files__magnification: NumericAggregations analysis__input_files__md5sum: Aggregations analysis__input_files__mean_coverage: NumericAggregations analysis__input_files__msi_score: NumericAggregations analysis__input_files__msi_status: Aggregations analysis__input_files__pairs_on_diff_chr: NumericAggregations analysis__input_files__plate_name: Aggregations analysis__input_files__plate_well: Aggregations analysis__input_files__platform: Aggregations analysis__input_files__proc_internal: Aggregations analysis__input_files__proportion_base_mismatch: NumericAggregations analysis__input_files__proportion_coverage_10x: NumericAggregations analysis__input_files__proportion_coverage_30x: NumericAggregations analysis__input_files__proportion_reads_duplicated: NumericAggregations analysis__input_files__proportion_reads_mapped: NumericAggregations analysis__input_files__proportion_targets_no_coverage: NumericAggregations analysis__input_files__read_pair_number: Aggregations analysis__input_files__revision: NumericAggregations analysis__input_files__stain_type: Aggregations analysis__input_files__state: Aggregations analysis__input_files__state_comment: Aggregations analysis__input_files__subclonal_genome_fraction: NumericAggregations analysis__input_files__submitter_id: Aggregations analysis__input_files__tmb: NumericAggregations analysis__input_files__tmb_exonic: NumericAggregations analysis__input_files__tmb_nonsynonymous: NumericAggregations analysis__input_files__tmb_nonsynonymous_exonic: NumericAggregations analysis__input_files__total_reads: NumericAggregations analysis__input_files__tumor_ploidy: NumericAggregations analysis__input_files__tumor_purity: NumericAggregations analysis__input_files__updated_datetime: Aggregations analysis__input_files__wgs_coverage: Aggregations analysis__metadata__read_groups__adapter_name: Aggregations analysis__metadata__read_groups__adapter_sequence: Aggregations analysis__metadata__read_groups__base_caller_name: Aggregations analysis__metadata__read_groups__base_caller_version: Aggregations analysis__metadata__read_groups__chipseq_antibody: Aggregations analysis__metadata__read_groups__chipseq_target: Aggregations analysis__metadata__read_groups__created_datetime: Aggregations analysis__metadata__read_groups__days_to_sequencing: NumericAggregations analysis__metadata__read_groups__experiment_name: Aggregations analysis__metadata__read_groups__flow_cell_barcode: Aggregations analysis__metadata__read_groups__fragment_maximum_length: NumericAggregations analysis__metadata__read_groups__fragment_mean_length: NumericAggregations analysis__metadata__read_groups__fragment_minimum_length: NumericAggregations analysis__metadata__read_groups__fragment_standard_deviation_length: NumericAggregations analysis__metadata__read_groups__fragmentation_enzyme: Aggregations analysis__metadata__read_groups__includes_spike_ins: Aggregations analysis__metadata__read_groups__instrument_model: Aggregations analysis__metadata__read_groups__is_paired_end: Aggregations analysis__metadata__read_groups__lane_number: NumericAggregations analysis__metadata__read_groups__library_name: Aggregations analysis__metadata__read_groups__library_preparation_kit_catalog_number: Aggregations analysis__metadata__read_groups__library_preparation_kit_name: Aggregations analysis__metadata__read_groups__library_preparation_kit_vendor: Aggregations analysis__metadata__read_groups__library_preparation_kit_version: Aggregations analysis__metadata__read_groups__library_selection: Aggregations analysis__metadata__read_groups__library_strand: Aggregations analysis__metadata__read_groups__library_strategy: Aggregations analysis__metadata__read_groups__multiplex_barcode: Aggregations analysis__metadata__read_groups__number_expect_cells: NumericAggregations analysis__metadata__read_groups__platform: Aggregations analysis__metadata__read_groups__read_group_id: Aggregations analysis__metadata__read_groups__read_group_name: Aggregations analysis__metadata__read_groups__read_group_qcs__adapter_content: Aggregations analysis__metadata__read_groups__read_group_qcs__basic_statistics: Aggregations analysis__metadata__read_groups__read_group_qcs__created_datetime: Aggregations 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downstream_analyses__output_files__experimental_strategy: Aggregations downstream_analyses__output_files__file_id: Aggregations downstream_analyses__output_files__file_name: Aggregations downstream_analyses__output_files__file_size: NumericAggregations downstream_analyses__output_files__genome_doubling: NumericAggregations downstream_analyses__output_files__imaging_date: Aggregations downstream_analyses__output_files__magnification: NumericAggregations downstream_analyses__output_files__md5sum: Aggregations downstream_analyses__output_files__mean_coverage: NumericAggregations downstream_analyses__output_files__msi_score: NumericAggregations downstream_analyses__output_files__msi_status: Aggregations downstream_analyses__output_files__pairs_on_diff_chr: NumericAggregations downstream_analyses__output_files__plate_name: Aggregations downstream_analyses__output_files__plate_well: Aggregations downstream_analyses__output_files__platform: Aggregations downstream_analyses__output_files__proc_internal: Aggregations downstream_analyses__output_files__proportion_base_mismatch: NumericAggregations downstream_analyses__output_files__proportion_coverage_10x: NumericAggregations downstream_analyses__output_files__proportion_coverage_30x: NumericAggregations downstream_analyses__output_files__proportion_reads_duplicated: NumericAggregations downstream_analyses__output_files__proportion_reads_mapped: NumericAggregations downstream_analyses__output_files__proportion_targets_no_coverage: NumericAggregations downstream_analyses__output_files__read_pair_number: Aggregations downstream_analyses__output_files__revision: NumericAggregations downstream_analyses__output_files__stain_type: Aggregations downstream_analyses__output_files__state: Aggregations downstream_analyses__output_files__state_comment: Aggregations downstream_analyses__output_files__subclonal_genome_fraction: NumericAggregations downstream_analyses__output_files__submitter_id: Aggregations downstream_analyses__output_files__tmb: NumericAggregations downstream_analyses__output_files__tmb_exonic: NumericAggregations downstream_analyses__output_files__tmb_nonsynonymous: NumericAggregations downstream_analyses__output_files__tmb_nonsynonymous_exonic: NumericAggregations downstream_analyses__output_files__total_reads: NumericAggregations downstream_analyses__output_files__tumor_ploidy: NumericAggregations downstream_analyses__output_files__tumor_purity: NumericAggregations downstream_analyses__output_files__updated_datetime: Aggregations downstream_analyses__output_files__wgs_coverage: Aggregations downstream_analyses__state: Aggregations downstream_analyses__submitter_id: Aggregations downstream_analyses__updated_datetime: Aggregations downstream_analyses__workflow_end_datetime: Aggregations downstream_analyses__workflow_link: Aggregations downstream_analyses__workflow_start_datetime: Aggregations downstream_analyses__workflow_type: Aggregations downstream_analyses__workflow_version: Aggregations error_type: Aggregations experimental_strategy: Aggregations file_autocomplete: Aggregations file_id: Aggregations file_name: Aggregations file_size: NumericAggregations genome_doubling: NumericAggregations imaging_date: Aggregations index_files__access: Aggregations index_files__average_base_quality: NumericAggregations index_files__average_insert_size: NumericAggregations index_files__average_read_length: NumericAggregations index_files__cancer_dna_fraction: NumericAggregations index_files__channel: Aggregations index_files__chip_id: Aggregations index_files__chip_position: Aggregations index_files__contamination: NumericAggregations index_files__contamination_error: NumericAggregations index_files__created_datetime: Aggregations index_files__data_category: Aggregations index_files__data_format: Aggregations index_files__data_type: Aggregations index_files__error_type: Aggregations index_files__experimental_strategy: Aggregations index_files__file_id: Aggregations index_files__file_name: Aggregations index_files__file_size: NumericAggregations index_files__genome_doubling: NumericAggregations index_files__imaging_date: Aggregations index_files__magnification: NumericAggregations index_files__md5sum: Aggregations index_files__mean_coverage: NumericAggregations index_files__msi_score: NumericAggregations index_files__msi_status: Aggregations index_files__pairs_on_diff_chr: NumericAggregations index_files__plate_name: Aggregations index_files__plate_well: Aggregations index_files__platform: Aggregations index_files__proc_internal: Aggregations index_files__proportion_base_mismatch: NumericAggregations index_files__proportion_coverage_10x: NumericAggregations index_files__proportion_coverage_30x: NumericAggregations index_files__proportion_reads_duplicated: NumericAggregations index_files__proportion_reads_mapped: NumericAggregations index_files__proportion_targets_no_coverage: NumericAggregations index_files__read_pair_number: Aggregations index_files__revision: NumericAggregations index_files__stain_type: Aggregations index_files__state: Aggregations index_files__state_comment: Aggregations index_files__subclonal_genome_fraction: NumericAggregations index_files__submitter_id: Aggregations index_files__tmb: NumericAggregations index_files__tmb_exonic: NumericAggregations index_files__tmb_nonsynonymous: NumericAggregations index_files__tmb_nonsynonymous_exonic: NumericAggregations index_files__total_reads: NumericAggregations index_files__tumor_ploidy: NumericAggregations index_files__tumor_purity: NumericAggregations index_files__updated_datetime: Aggregations index_files__wgs_coverage: Aggregations magnification: NumericAggregations md5sum: Aggregations mean_coverage: NumericAggregations metadata_files__access: Aggregations metadata_files__created_datetime: Aggregations metadata_files__data_category: Aggregations metadata_files__data_format: Aggregations metadata_files__data_type: Aggregations metadata_files__error_type: Aggregations metadata_files__file_id: Aggregations metadata_files__file_name: Aggregations metadata_files__file_size: NumericAggregations metadata_files__md5sum: Aggregations metadata_files__state: Aggregations metadata_files__state_comment: Aggregations metadata_files__submitter_id: Aggregations metadata_files__type: Aggregations metadata_files__updated_datetime: Aggregations msi_score: NumericAggregations msi_status: Aggregations pairs_on_diff_chr: NumericAggregations plate_name: Aggregations plate_well: Aggregations platform: Aggregations proc_internal: Aggregations proportion_base_mismatch: NumericAggregations proportion_coverage_10x: NumericAggregations proportion_coverage_30x: NumericAggregations proportion_reads_duplicated: NumericAggregations proportion_reads_mapped: NumericAggregations proportion_targets_no_coverage: NumericAggregations read_pair_number: Aggregations revision: NumericAggregations stain_type: Aggregations state: Aggregations state_comment: Aggregations subclonal_genome_fraction: NumericAggregations submitter_id: Aggregations tags: Aggregations tmb: NumericAggregations tmb_exonic: NumericAggregations tmb_nonsynonymous: NumericAggregations tmb_nonsynonymous_exonic: NumericAggregations total_reads: NumericAggregations tumor_ploidy: NumericAggregations tumor_purity: NumericAggregations type: Aggregations updated_datetime: Aggregations wgs_coverage: Aggregations } type FileAnalysis { input_files: InputFiles metadata: Metadata analysis_id: String analysis_type: String created_datetime: String state: String submitter_id: String updated_datetime: String workflow_end_datetime: String workflow_link: String workflow_start_datetime: String workflow_type: String workflow_version: String id: String } type FileAnnotation implements Node { id: ID! annotation_id: String case_id: String case_submitter_id: String category: String classification: String created_datetime: String creator: String entity_id: String entity_submitter_id: String entity_type: String legacy_created_datetime: String legacy_updated_datetime: String notes: String state: String status: String submitter_id: String updated_datetime: String score: Int } type FileAnnotationConnection { pageInfo: PageInfo! edges: [FileAnnotationEdge]! total: Int! } type FileAnnotationEdge { node: FileAnnotation cursor: String! } type FileAnnotations { hits(offset: Int, sort: [Sort], filters: FiltersArgument, cohort_id: String, case_filters: FiltersArgument, before: String, after: String, first: Int, last: Int): FileAnnotationConnection } type FileCase implements Node { id: ID! project: Project aliquot_ids: String analyte_ids: String case_id: String consent_type: String created_datetime: String days_to_consent: Float days_to_lost_to_followup: Float diagnosis_ids: String disease_type: String index_date: String lost_to_followup: String portion_ids: String primary_site: String sample_ids: String slide_ids: String state: String submitter_aliquot_ids: String submitter_analyte_ids: String submitter_diagnosis_ids: String submitter_id: String submitter_portion_ids: String submitter_sample_ids: String submitter_slide_ids: String updated_datetime: String score: Int } type FileCaseConnection { pageInfo: PageInfo! edges: [FileCaseEdge]! total: Int! } type FileCaseEdge { node: FileCase cursor: String! } type FileCases { hits(offset: Int, sort: [Sort], filters: FiltersArgument, cohort_id: String, case_filters: FiltersArgument, before: String, after: String, first: Int, last: Int): FileCaseConnection } type FileCenter { center_id: String center_type: String code: String name: String namespace: String short_name: String id: String } type FileConnection { pageInfo: PageInfo! edges: [FileEdge]! total: Int! } type FileEdge { node: File cursor: String! } type FileSize { value: Float } type Files { facets(filters: FiltersArgument, facets: [String]!): JSONString aggregations(filters: FiltersArgument, cohort_id: String, case_filters: FiltersArgument, aggregations_filter_themselves: Boolean = true): FileAggregations hits(score: String, query: String, offset: Int, sort: [Sort], filters: FiltersArgument, cohort_id: String, case_filters: FiltersArgument, before: String, after: String, first: Int, last: Int): FileConnection } scalar FiltersArgument type FollowUp implements Node { id: ID! annotations: CaseAnnotations molecular_tests: MolecularTests adverse_event: String adverse_event_grade: String barretts_esophagus_goblet_cells_present: String cause_of_response: String created_datetime: String days_to_adverse_event: Float days_to_first_event: Float days_to_follow_up: Float days_to_imaging: Float days_to_progression: Float days_to_progression_free: Float days_to_recurrence: Float discontiguous_lesion_count: Float disease_response: String ecog_performance_status: String evidence_of_progression_type: String evidence_of_recurrence_type: String first_event: String follow_up_id: String histologic_progression: String history_of_tumor: String history_of_tumor_type: String hormone_replacement_therapy_type: String imaging_anatomic_site: String imaging_findings: String imaging_result: String imaging_suv: Float imaging_suv_max: Float imaging_type: String karnofsky_performance_status: String peritoneal_washing_results: String procedures_performed: String progression_or_recurrence: String progression_or_recurrence_anatomic_site: String progression_or_recurrence_type: String recist_targeted_regions_number: Float recist_targeted_regions_sum: Float scan_tracer_used: String state: String submitter_id: String timepoint_category: String treatment_emergent_adverse_event: String updated_datetime: String year_of_follow_up: Float score: Int } type FollowUpConnection { pageInfo: PageInfo! edges: [FollowUpEdge]! total: Int! } type FollowUpEdge { node: FollowUp cursor: String! } type FollowUps { hits(offset: Int, sort: [Sort], filters: FiltersArgument, cohort_id: String, case_filters: FiltersArgument, before: String, after: String, first: Int, last: Int): FollowUpConnection } type Gene implements Node { id: ID! biotype: String canonical_transcript_id: String canonical_transcript_length: Float canonical_transcript_length_cds: Float canonical_transcript_length_genomic: Float description: String gene_autocomplete: String gene_chromosome: String gene_end: Float gene_id: String gene_start: Float gene_strand: Float is_cancer_gene_census: Boolean name: String symbol: String case: GeneCases cytoband: [String] synonyms: [String] external_db_ids: ExternalDbIds transcripts: Transcripts score: Int } type GeneAggregations { biotype: Aggregations canonical_transcript_id: Aggregations canonical_transcript_length: NumericAggregations canonical_transcript_length_cds: NumericAggregations canonical_transcript_length_genomic: NumericAggregations case__available_variation_data: Aggregations case__case_id: Aggregations case__cnv__chromosome: Aggregations case__cnv__cnv_change: Aggregations case__cnv__cnv_change_5_category: Aggregations case__cnv__cnv_id: Aggregations case__cnv__end_position: NumericAggregations case__cnv__gene_level_cn: Aggregations case__cnv__ncbi_build: Aggregations case__cnv__observation__copy_number: NumericAggregations case__cnv__observation__observation_id: Aggregations case__cnv__observation__sample__tumor_sample_barcode: Aggregations case__cnv__observation__sample__tumor_sample_uuid: Aggregations case__cnv__observation__sample_ploidy_integer: NumericAggregations case__cnv__observation__src_file_id: Aggregations case__cnv__observation__variant_calling__variant_caller: Aggregations case__cnv__observation__variant_status: Aggregations case__cnv__start_position: NumericAggregations case__consent_type: Aggregations case__days_to_consent: NumericAggregations case__demographic__age_at_index: NumericAggregations case__demographic__age_is_obfuscated: Aggregations case__demographic__cause_of_death: Aggregations case__demographic__days_to_birth: NumericAggregations case__demographic__days_to_death: NumericAggregations case__demographic__demographic_id: Aggregations case__demographic__ethnicity: Aggregations case__demographic__race: Aggregations case__demographic__sex_at_birth: Aggregations case__demographic__state: Aggregations case__demographic__submitter_id: Aggregations case__demographic__vital_status: Aggregations case__demographic__year_of_birth: NumericAggregations case__demographic__year_of_death: NumericAggregations case__diagnoses__age_at_diagnosis: NumericAggregations case__diagnoses__ajcc_clinical_m: Aggregations case__diagnoses__ajcc_clinical_n: Aggregations case__diagnoses__ajcc_clinical_stage: Aggregations case__diagnoses__ajcc_clinical_t: Aggregations case__diagnoses__ajcc_pathologic_m: Aggregations case__diagnoses__ajcc_pathologic_n: Aggregations case__diagnoses__ajcc_pathologic_stage: Aggregations case__diagnoses__ajcc_pathologic_t: Aggregations case__diagnoses__ajcc_staging_system_edition: Aggregations case__diagnoses__ann_arbor_b_symptoms: Aggregations case__diagnoses__ann_arbor_clinical_stage: Aggregations case__diagnoses__ann_arbor_extranodal_involvement: Aggregations case__diagnoses__ann_arbor_pathologic_stage: Aggregations case__diagnoses__burkitt_lymphoma_clinical_variant: Aggregations case__diagnoses__classification_of_tumor: Aggregations case__diagnoses__cog_renal_stage: Aggregations case__diagnoses__days_to_diagnosis: NumericAggregations case__diagnoses__days_to_last_follow_up: NumericAggregations case__diagnoses__days_to_last_known_disease_status: NumericAggregations case__diagnoses__days_to_recurrence: NumericAggregations case__diagnoses__diagnosis_id: Aggregations case__diagnoses__diagnosis_is_primary_disease: Aggregations case__diagnoses__esophageal_columnar_dysplasia_degree: Aggregations case__diagnoses__esophageal_columnar_metaplasia_present: Aggregations case__diagnoses__figo_stage: Aggregations case__diagnoses__figo_staging_edition_year: Aggregations case__diagnoses__gastric_esophageal_junction_involvement: Aggregations case__diagnoses__goblet_cells_columnar_mucosa_present: Aggregations case__diagnoses__icd_10_code: Aggregations case__diagnoses__igcccg_stage: Aggregations case__diagnoses__inss_stage: Aggregations case__diagnoses__international_prognostic_index: Aggregations case__diagnoses__iss_stage: Aggregations case__diagnoses__last_known_disease_status: Aggregations case__diagnoses__laterality: Aggregations case__diagnoses__masaoka_stage: Aggregations case__diagnoses__metastasis_at_diagnosis: Aggregations case__diagnoses__method_of_diagnosis: Aggregations case__diagnoses__morphology: Aggregations case__diagnoses__pathology_details__anaplasia_present: Aggregations case__diagnoses__pathology_details__anaplasia_present_type: Aggregations case__diagnoses__pathology_details__bone_marrow_malignant_cells: Aggregations case__diagnoses__pathology_details__breslow_thickness: NumericAggregations case__diagnoses__pathology_details__circumferential_resection_margin: NumericAggregations case__diagnoses__pathology_details__columnar_mucosa_present: Aggregations case__diagnoses__pathology_details__dysplasia_degree: Aggregations case__diagnoses__pathology_details__dysplasia_type: Aggregations case__diagnoses__pathology_details__greatest_tumor_dimension: NumericAggregations case__diagnoses__pathology_details__gross_tumor_weight: NumericAggregations case__diagnoses__pathology_details__largest_extrapelvic_peritoneal_focus: Aggregations case__diagnoses__pathology_details__lymph_node_involved_site: Aggregations case__diagnoses__pathology_details__lymph_node_involvement: Aggregations case__diagnoses__pathology_details__lymph_nodes_positive: NumericAggregations case__diagnoses__pathology_details__lymph_nodes_tested: NumericAggregations case__diagnoses__pathology_details__lymphatic_invasion_present: Aggregations case__diagnoses__pathology_details__margin_status: Aggregations case__diagnoses__pathology_details__metaplasia_present: Aggregations case__diagnoses__pathology_details__morphologic_architectural_pattern: Aggregations case__diagnoses__pathology_details__non_nodal_regional_disease: Aggregations case__diagnoses__pathology_details__non_nodal_tumor_deposits: Aggregations case__diagnoses__pathology_details__number_proliferating_cells: NumericAggregations case__diagnoses__pathology_details__pathology_detail_id: Aggregations case__diagnoses__pathology_details__percent_tumor_invasion: NumericAggregations case__diagnoses__pathology_details__perineural_invasion_present: Aggregations case__diagnoses__pathology_details__peripancreatic_lymph_nodes_positive: Aggregations case__diagnoses__pathology_details__peripancreatic_lymph_nodes_tested: NumericAggregations case__diagnoses__pathology_details__prostatic_chips_positive_count: NumericAggregations case__diagnoses__pathology_details__prostatic_chips_total_count: NumericAggregations case__diagnoses__pathology_details__prostatic_involvement_percent: NumericAggregations case__diagnoses__pathology_details__state: Aggregations case__diagnoses__pathology_details__submitter_id: Aggregations case__diagnoses__pathology_details__transglottic_extension: Aggregations case__diagnoses__pathology_details__tumor_largest_dimension_diameter: NumericAggregations case__diagnoses__pathology_details__vascular_invasion_present: Aggregations case__diagnoses__pathology_details__vascular_invasion_type: Aggregations case__diagnoses__primary_diagnosis: Aggregations case__diagnoses__primary_gleason_grade: Aggregations case__diagnoses__prior_malignancy: Aggregations case__diagnoses__prior_treatment: Aggregations case__diagnoses__progression_or_recurrence: Aggregations case__diagnoses__residual_disease: Aggregations case__diagnoses__secondary_gleason_grade: Aggregations case__diagnoses__site_of_resection_or_biopsy: Aggregations case__diagnoses__state: Aggregations case__diagnoses__submitter_id: Aggregations case__diagnoses__synchronous_malignancy: Aggregations case__diagnoses__tissue_or_organ_of_origin: Aggregations case__diagnoses__treatments__chemo_concurrent_to_radiation: Aggregations case__diagnoses__treatments__days_to_treatment_end: NumericAggregations case__diagnoses__treatments__days_to_treatment_start: NumericAggregations case__diagnoses__treatments__initial_disease_status: Aggregations case__diagnoses__treatments__number_of_cycles: NumericAggregations case__diagnoses__treatments__regimen_or_line_of_therapy: Aggregations case__diagnoses__treatments__state: Aggregations case__diagnoses__treatments__submitter_id: Aggregations case__diagnoses__treatments__therapeutic_agents: Aggregations case__diagnoses__treatments__treatment_dose: NumericAggregations case__diagnoses__treatments__treatment_frequency: Aggregations case__diagnoses__treatments__treatment_id: Aggregations case__diagnoses__treatments__treatment_intent_type: Aggregations case__diagnoses__treatments__treatment_or_therapy: Aggregations case__diagnoses__treatments__treatment_outcome: Aggregations case__diagnoses__treatments__treatment_type: Aggregations case__diagnoses__treatments__treatment_type_administered: Aggregations case__diagnoses__tumor_grade: Aggregations case__diagnoses__year_of_diagnosis: NumericAggregations case__disease_type: Aggregations case__exposures__alcohol_days_per_week: NumericAggregations case__exposures__alcohol_history: Aggregations case__exposures__alcohol_intensity: Aggregations case__exposures__cigarettes_per_day: NumericAggregations case__exposures__exposure_id: Aggregations case__exposures__pack_years_smoked: NumericAggregations case__exposures__state: Aggregations case__exposures__submitter_id: Aggregations case__exposures__tobacco_smoking_onset_year: NumericAggregations case__exposures__tobacco_smoking_quit_year: NumericAggregations case__exposures__tobacco_smoking_status: Aggregations case__family_histories__family_history_id: Aggregations case__family_histories__relationship_age_at_diagnosis: NumericAggregations case__family_histories__relationship_primary_diagnosis: Aggregations case__family_histories__relationship_type: Aggregations case__family_histories__relative_with_cancer_history: Aggregations case__family_histories__state: Aggregations case__family_histories__submitter_id: Aggregations case__follow_ups__days_to_follow_up: NumericAggregations case__follow_ups__follow_up_id: Aggregations case__follow_ups__molecular_tests__gene_symbol: Aggregations case__follow_ups__molecular_tests__molecular_analysis_method: Aggregations case__follow_ups__molecular_tests__molecular_test_id: Aggregations case__follow_ups__molecular_tests__submitter_id: Aggregations case__follow_ups__molecular_tests__test_result: Aggregations case__follow_ups__other_clinical_attributes__other_clinical_attribute_id: Aggregations case__follow_ups__other_clinical_attributes__submitter_id: Aggregations case__follow_ups__submitter_id: Aggregations case__index_date: Aggregations case__lost_to_followup: Aggregations case__primary_site: Aggregations case__project__dbgap_accession_number: Aggregations case__project__disease_type: Aggregations case__project__intended_release_date: Aggregations case__project__name: Aggregations case__project__primary_site: Aggregations case__project__program__dbgap_accession_number: Aggregations case__project__program__name: Aggregations case__project__program__program_id: Aggregations case__project__project_id: Aggregations case__project__releasable: Aggregations case__project__released: Aggregations case__project__state: Aggregations case__samples__portions__analytes__aliquots__aliquot_id: Aggregations case__samples__portions__analytes__aliquots__submitter_id: Aggregations case__samples__portions__analytes__analyte_id: Aggregations case__samples__portions__analytes__analyte_type: Aggregations case__samples__portions__analytes__submitter_id: Aggregations case__samples__portions__portion_id: Aggregations case__samples__portions__slides__section_location: Aggregations case__samples__portions__slides__slide_id: Aggregations case__samples__portions__slides__submitter_id: Aggregations case__samples__portions__submitter_id: Aggregations case__samples__preservation_method: Aggregations case__samples__sample_id: Aggregations case__samples__sample_type: Aggregations case__samples__specimen_type: Aggregations case__samples__submitter_id: Aggregations case__samples__tissue_type: Aggregations case__samples__tumor_descriptor: Aggregations case__ssm__chromosome: Aggregations case__ssm__clinical_annotations__civic__gene_id: Aggregations case__ssm__clinical_annotations__civic__variant_id: Aggregations case__ssm__consequence__consequence_id: Aggregations case__ssm__consequence__transcript__aa_change: Aggregations case__ssm__consequence__transcript__annotation__amino_acids: Aggregations case__ssm__consequence__transcript__annotation__ccds: Aggregations case__ssm__consequence__transcript__annotation__cdna_position: Aggregations case__ssm__consequence__transcript__annotation__cds_end: NumericAggregations case__ssm__consequence__transcript__annotation__cds_length: NumericAggregations case__ssm__consequence__transcript__annotation__cds_position: Aggregations case__ssm__consequence__transcript__annotation__cds_start: NumericAggregations case__ssm__consequence__transcript__annotation__clin_sig: Aggregations case__ssm__consequence__transcript__annotation__codons: Aggregations case__ssm__consequence__transcript__annotation__dbsnp_rs: Aggregations case__ssm__consequence__transcript__annotation__dbsnp_val_status: Aggregations case__ssm__consequence__transcript__annotation__domains: Aggregations case__ssm__consequence__transcript__annotation__ensp: Aggregations case__ssm__consequence__transcript__annotation__existing_variation: Aggregations case__ssm__consequence__transcript__annotation__hgvsc: Aggregations case__ssm__consequence__transcript__annotation__hgvsp: Aggregations case__ssm__consequence__transcript__annotation__hgvsp_short: Aggregations case__ssm__consequence__transcript__annotation__polyphen_impact: Aggregations case__ssm__consequence__transcript__annotation__polyphen_score: NumericAggregations case__ssm__consequence__transcript__annotation__protein_position: Aggregations case__ssm__consequence__transcript__annotation__pubmed: Aggregations case__ssm__consequence__transcript__annotation__sift_impact: Aggregations case__ssm__consequence__transcript__annotation__sift_score: NumericAggregations case__ssm__consequence__transcript__annotation__swissprot: Aggregations case__ssm__consequence__transcript__annotation__transcript_id: Aggregations case__ssm__consequence__transcript__annotation__trembl: Aggregations case__ssm__consequence__transcript__annotation__uniparc: Aggregations case__ssm__consequence__transcript__annotation__vep_impact: Aggregations case__ssm__consequence__transcript__consequence_type: Aggregations case__ssm__consequence__transcript__ref_seq_accession: Aggregations case__ssm__consequence__transcript__transcript_id: Aggregations case__ssm__cosmic_id: Aggregations case__ssm__end_position: NumericAggregations case__ssm__genomic_dna_change: Aggregations case__ssm__mutation_subtype: Aggregations case__ssm__mutation_type: Aggregations case__ssm__ncbi_build: Aggregations case__ssm__observation__center: Aggregations case__ssm__observation__input_bam_file__normal_bam_uuid: Aggregations case__ssm__observation__input_bam_file__tumor_bam_uuid: Aggregations case__ssm__observation__mutation_status: Aggregations case__ssm__observation__normal_genotype__match_norm_seq_allele1: Aggregations case__ssm__observation__normal_genotype__match_norm_seq_allele2: Aggregations case__ssm__observation__observation_id: Aggregations case__ssm__observation__read_depth__n_depth: NumericAggregations case__ssm__observation__read_depth__t_alt_count: NumericAggregations case__ssm__observation__read_depth__t_depth: NumericAggregations case__ssm__observation__read_depth__t_ref_count: NumericAggregations case__ssm__observation__sample__matched_norm_sample_barcode: Aggregations case__ssm__observation__sample__matched_norm_sample_uuid: Aggregations case__ssm__observation__sample__tumor_sample_barcode: Aggregations case__ssm__observation__sample__tumor_sample_uuid: Aggregations case__ssm__observation__tumor_genotype__tumor_seq_allele1: Aggregations case__ssm__observation__tumor_genotype__tumor_seq_allele2: Aggregations case__ssm__observation__validation__tumor_validation_allele1: Aggregations case__ssm__observation__validation__tumor_validation_allele2: Aggregations case__ssm__observation__validation__validation_method: Aggregations case__ssm__observation__variant_calling__variant_caller: Aggregations case__ssm__observation__variant_calling__variant_process: Aggregations case__ssm__reference_allele: Aggregations case__ssm__ssm_id: Aggregations case__ssm__start_position: NumericAggregations case__ssm__tumor_allele: Aggregations case__state: Aggregations case__submitter_id: Aggregations case__tissue_source_site__bcr_id: Aggregations case__tissue_source_site__code: Aggregations case__tissue_source_site__name: Aggregations case__tissue_source_site__project: Aggregations case__tissue_source_site__tissue_source_site_id: Aggregations cytoband: Aggregations description: Aggregations external_db_ids__entrez_gene: Aggregations external_db_ids__hgnc: Aggregations external_db_ids__omim_gene: Aggregations external_db_ids__uniprotkb_swissprot: Aggregations gene_autocomplete: Aggregations gene_chromosome: Aggregations gene_end: NumericAggregations gene_id: Aggregations gene_start: NumericAggregations gene_strand: NumericAggregations is_cancer_gene_census: Aggregations name: Aggregations symbol: Aggregations synonyms: Aggregations transcripts__biotype: Aggregations transcripts__cdna_coding_end: NumericAggregations transcripts__cdna_coding_start: NumericAggregations transcripts__coding_region_end: NumericAggregations transcripts__coding_region_start: NumericAggregations transcripts__domains__description: Aggregations transcripts__domains__end: NumericAggregations transcripts__domains__gff_source: Aggregations transcripts__domains__hit_name: Aggregations transcripts__domains__interpro_id: Aggregations transcripts__domains__start: NumericAggregations transcripts__end: NumericAggregations transcripts__end_exon: NumericAggregations transcripts__exons__cdna_coding_end: NumericAggregations transcripts__exons__cdna_coding_start: NumericAggregations transcripts__exons__cdna_end: NumericAggregations transcripts__exons__cdna_start: NumericAggregations transcripts__exons__end: NumericAggregations transcripts__exons__end_phase: NumericAggregations transcripts__exons__genomic_coding_end: NumericAggregations transcripts__exons__genomic_coding_start: NumericAggregations transcripts__exons__start: NumericAggregations transcripts__exons__start_phase: NumericAggregations transcripts__is_canonical: Aggregations transcripts__length: NumericAggregations transcripts__length_amino_acid: NumericAggregations transcripts__length_cds: NumericAggregations transcripts__name: Aggregations transcripts__number_of_exons: NumericAggregations transcripts__seq_exon_end: NumericAggregations transcripts__seq_exon_start: NumericAggregations transcripts__start: NumericAggregations transcripts__start_exon: NumericAggregations transcripts__transcript_id: Aggregations transcripts__translation_id: Aggregations } type GeneCase implements Node { id: ID! available_variation_data: String case_id: String consent_type: String days_to_consent: Float disease_type: String index_date: String lost_to_followup: String primary_site: String state: String submitter_id: String score: Int } type GeneCaseConnection { pageInfo: PageInfo! edges: [GeneCaseEdge]! total: Int! } type GeneCaseEdge { node: GeneCase cursor: String! } type GeneCases { hits(offset: Int, sort: [Sort], filters: FiltersArgument, cohort_id: String, case_filters: FiltersArgument, before: String, after: String, first: Int, last: Int): GeneCaseConnection } type GeneConnection { pageInfo: PageInfo! edges: [GeneEdge]! total: Int! } type GeneEdge { node: Gene cursor: String! } type Genes { facets(filters: FiltersArgument, facets: [String]!): JSONString aggregations(filters: FiltersArgument, cohort_id: String, case_filters: FiltersArgument, aggregations_filter_themselves: Boolean = true): GeneAggregations hits(score: String, query: String, offset: Int, sort: [Sort], filters: FiltersArgument, cohort_id: String, case_filters: FiltersArgument, before: String, after: String, first: Int, last: Int): GeneConnection } type IndexFile implements Node { id: ID! access: String average_base_quality: Float average_insert_size: Float average_read_length: Float cancer_dna_fraction: Float channel: String chip_id: String chip_position: String contamination: Float contamination_error: Float created_datetime: String data_category: String data_format: String data_type: String error_type: String experimental_strategy: String file_id: String file_name: String file_size: Float genome_doubling: Float imaging_date: String magnification: Float md5sum: String mean_coverage: Float msi_score: Float msi_status: String pairs_on_diff_chr: Float plate_name: String plate_well: String platform: String proc_internal: String proportion_base_mismatch: Float proportion_coverage_10x: Float proportion_coverage_30x: Float proportion_reads_duplicated: Float proportion_reads_mapped: Float proportion_targets_no_coverage: Float read_pair_number: String revision: Float stain_type: String state: String state_comment: String subclonal_genome_fraction: Float submitter_id: String tmb: Float tmb_exonic: Float tmb_nonsynonymous: Float tmb_nonsynonymous_exonic: Float total_reads: Float tumor_ploidy: Float tumor_purity: Float updated_datetime: String wgs_coverage: String score: Int } type IndexFileConnection { pageInfo: PageInfo! edges: [IndexFileEdge]! total: Int! } type IndexFileEdge { node: IndexFile cursor: String! } type IndexFiles { hits(offset: Int, sort: [Sort], filters: FiltersArgument, cohort_id: String, case_filters: FiltersArgument, before: String, after: String, first: Int, last: Int): IndexFileConnection } type InputBamFile { normal_bam_uuid: String tumor_bam_uuid: String id: String } type InputFile implements Node { id: ID! access: String average_base_quality: Float average_insert_size: Float average_read_length: Float cancer_dna_fraction: Float channel: String chip_id: String chip_position: String contamination: Float contamination_error: Float created_datetime: String data_category: String data_format: String data_type: String error_type: String experimental_strategy: String file_id: String file_name: String file_size: Float genome_doubling: Float imaging_date: String magnification: Float md5sum: String mean_coverage: Float msi_score: Float msi_status: String pairs_on_diff_chr: Float plate_name: String plate_well: String platform: String proc_internal: String proportion_base_mismatch: Float proportion_coverage_10x: Float proportion_coverage_30x: Float proportion_reads_duplicated: Float proportion_reads_mapped: Float proportion_targets_no_coverage: Float read_pair_number: String revision: Float stain_type: String state: String state_comment: String subclonal_genome_fraction: Float submitter_id: String tmb: Float tmb_exonic: Float tmb_nonsynonymous: Float tmb_nonsynonymous_exonic: Float total_reads: Float tumor_ploidy: Float tumor_purity: Float updated_datetime: String wgs_coverage: String score: Int } type InputFileConnection { pageInfo: PageInfo! edges: [InputFileEdge]! total: Int! } type InputFileEdge { node: InputFile cursor: String! } type InputFiles { hits(offset: Int, sort: [Sort], filters: FiltersArgument, cohort_id: String, case_filters: FiltersArgument, before: String, after: String, first: Int, last: Int): InputFileConnection } enum Intent { unknown user portal internal external } scalar JSONString type Metadata { read_groups: ReadGroups id: String } type MetadataFile implements Node { id: ID! access: String created_datetime: String data_category: String data_format: String data_type: String error_type: String file_id: String file_name: String file_size: Float md5sum: String state: String state_comment: String submitter_id: String type: String updated_datetime: String score: Int } type MetadataFileConnection { pageInfo: PageInfo! edges: [MetadataFileEdge]! total: Int! } type MetadataFileEdge { node: MetadataFile cursor: String! } type MetadataFiles { hits(offset: Int, sort: [Sort], filters: FiltersArgument, cohort_id: String, case_filters: FiltersArgument, before: String, after: String, first: Int, last: Int): MetadataFileConnection } enum Missing { last first } enum Mode { min max avg sum } type MolecularTest implements Node { id: ID! annotations: CaseAnnotations aa_change: String aneuploidy: String antigen: String biospecimen_type: String biospecimen_volume: Float blood_test_normal_range_lower: Float blood_test_normal_range_upper: Float cell_count: Float chromosomal_translocation: String chromosome: String chromosome_arm: String clonality: String copy_number: Float created_datetime: String cytoband: String days_to_test: Float exon: String gene_symbol: String histone_family: String histone_variant: String hpv_strain: String intron: String laboratory_test: String loci_abnormal_count: Float loci_count: Float locus: String mismatch_repair_mutation: String mitotic_count: Float mitotic_total_area: Float molecular_analysis_method: String molecular_consequence: String molecular_test_id: String mutation_codon: String pathogenicity: String ploidy: String second_exon: String second_gene_symbol: String specialized_molecular_test: String staining_intensity_scale: String staining_intensity_value: String state: String submitter_id: String test_analyte_type: String test_result: String test_units: String test_value: Float test_value_range: String timepoint_category: String transcript: String updated_datetime: String variant_origin: String variant_type: String zygosity: String score: Int } type MolecularTestConnection { pageInfo: PageInfo! edges: [MolecularTestEdge]! total: Int! } type MolecularTestEdge { node: MolecularTest cursor: String! } type MolecularTests { hits(offset: Int, sort: [Sort], filters: FiltersArgument, cohort_id: String, case_filters: FiltersArgument, before: String, after: String, first: Int, last: Int): MolecularTestConnection } type Mutation { sets(input: RelayIsDumb): Sets } interface Node { id: ID! } type NumericAggregations { stats: Stats histogram(interval: Float): Aggregations percentiles: Percentiles range(ranges: FiltersArgument): Aggregations } enum Order { asc desc } type OutputFile implements Node { id: ID! access: String average_base_quality: Float average_insert_size: Float average_read_length: Float cancer_dna_fraction: Float channel: String chip_id: String chip_position: String contamination: Float contamination_error: Float created_datetime: String data_category: String data_format: String data_type: String error_type: String experimental_strategy: String file_id: String file_name: String file_size: Float genome_doubling: Float imaging_date: String magnification: Float md5sum: String mean_coverage: Float msi_score: Float msi_status: String pairs_on_diff_chr: Float plate_name: String plate_well: String platform: String proc_internal: String proportion_base_mismatch: Float proportion_coverage_10x: Float proportion_coverage_30x: Float proportion_reads_duplicated: Float proportion_reads_mapped: Float proportion_targets_no_coverage: Float read_pair_number: String revision: Float stain_type: String state: String state_comment: String subclonal_genome_fraction: Float submitter_id: String tmb: Float tmb_exonic: Float tmb_nonsynonymous: Float tmb_nonsynonymous_exonic: Float total_reads: Float tumor_ploidy: Float tumor_purity: Float updated_datetime: String wgs_coverage: String score: Int } type OutputFileConnection { pageInfo: PageInfo! edges: [OutputFileEdge]! total: Int! } type OutputFileEdge { node: OutputFile cursor: String! } type OutputFiles { hits(offset: Int, sort: [Sort], filters: FiltersArgument, cohort_id: String, case_filters: FiltersArgument, before: String, after: String, first: Int, last: Int): OutputFileConnection } type PageInfo { hasNextPage: Boolean! hasPreviousPage: Boolean! startCursor: String endCursor: String } type Percentiles { quartile_1: Float quartile_3: Float median: Float iqr: Float } type Portion implements Node { id: ID! analytes: Analytes annotations: CaseAnnotations center: FileCenter slides: Slides created_datetime: String creation_datetime: Float is_ffpe: String portion_id: String portion_number: String state: String submitter_id: String updated_datetime: String weight: Float score: Int } type PortionConnection { pageInfo: PageInfo! edges: [PortionEdge]! total: Int! } type PortionEdge { node: Portion cursor: String! } type Portions { hits(offset: Int, sort: [Sort], filters: FiltersArgument, cohort_id: String, case_filters: FiltersArgument, before: String, after: String, first: Int, last: Int): PortionConnection } type Program { dbgap_accession_number: String name: String program_id: String id: String } type Project implements Node { id: ID! dbgap_accession_number: String intended_release_date: String name: String project_autocomplete: String project_id: String releasable: String released: String state: String disease_type: [String] primary_site: [String] program: Program summary: Summary score: Int } type ProjectAggregations { dbgap_accession_number: Aggregations disease_type: Aggregations intended_release_date: Aggregations name: Aggregations primary_site: Aggregations program__dbgap_accession_number: Aggregations program__name: Aggregations program__program_id: Aggregations project_autocomplete: Aggregations project_id: Aggregations releasable: Aggregations released: Aggregations state: Aggregations summary__case_count: NumericAggregations summary__data_categories__case_count: NumericAggregations summary__data_categories__data_category: Aggregations summary__data_categories__file_count: NumericAggregations summary__experimental_strategies__case_count: NumericAggregations summary__experimental_strategies__experimental_strategy: Aggregations summary__experimental_strategies__file_count: NumericAggregations summary__file_count: NumericAggregations summary__file_size: NumericAggregations } type ProjectConnection { pageInfo: PageInfo! edges: [ProjectEdge]! total: Int! } type ProjectEdge { node: Project cursor: String! } type Projects { facets(filters: FiltersArgument, facets: [String]!): JSONString aggregations(filters: FiltersArgument, cohort_id: String, case_filters: FiltersArgument, aggregations_filter_themselves: Boolean = true): ProjectAggregations hits(score: String, query: String, offset: Int, sort: [Sort], filters: FiltersArgument, cohort_id: String, case_filters: FiltersArgument, before: String, after: String, first: Int, last: Int): ProjectConnection } type ProteinMutations { data(first: Int, offset: Int, fields: [String]!, score: String, filters: FiltersArgument): JSONString } type QueryResults { total: Int hits: [Node] } type ReadDepth { n_depth: Float t_alt_count: Float t_depth: Float t_ref_count: Float id: String } type ReadGroup implements Node { id: ID! read_group_qcs: ReadGroupQcs adapter_name: String adapter_sequence: String base_caller_name: String base_caller_version: String chipseq_antibody: String chipseq_target: String created_datetime: String days_to_sequencing: Float experiment_name: String flow_cell_barcode: String fragment_maximum_length: Float fragment_mean_length: Float fragment_minimum_length: Float fragment_standard_deviation_length: Float fragmentation_enzyme: String includes_spike_ins: String instrument_model: String is_paired_end: String lane_number: Float library_name: String library_preparation_kit_catalog_number: String library_preparation_kit_name: String library_preparation_kit_vendor: String library_preparation_kit_version: String library_selection: String library_strand: String library_strategy: String multiplex_barcode: String number_expect_cells: Float platform: String read_group_id: String read_group_name: String read_length: Float rin: Float sequencing_center: String sequencing_date: String single_cell_library: String size_selection_range: String spike_ins_concentration: String spike_ins_fasta: String state: String submitter_id: String target_capture_kit: String target_capture_kit_catalog_number: String target_capture_kit_name: String target_capture_kit_target_region: String target_capture_kit_vendor: String target_capture_kit_version: String to_trim_adapter_sequence: String updated_datetime: String score: Int } type ReadGroupConnection { pageInfo: PageInfo! edges: [ReadGroupEdge]! total: Int! } type ReadGroupEdge { node: ReadGroup cursor: String! } type ReadGroupQc implements Node { id: ID! adapter_content: String basic_statistics: String created_datetime: String encoding: String fastq_name: String kmer_content: String overrepresented_sequences: String per_base_n_content: String per_base_sequence_content: String per_base_sequence_quality: String per_sequence_gc_content: String per_sequence_quality_score: String per_tile_sequence_quality: String percent_gc_content: Float read_group_qc_id: String sequence_duplication_levels: String sequence_length_distribution: String state: String submitter_id: String total_sequences: Float updated_datetime: String workflow_end_datetime: String workflow_link: String workflow_start_datetime: String workflow_type: String workflow_version: String score: Int } type ReadGroupQcConnection { pageInfo: PageInfo! edges: [ReadGroupQcEdge]! total: Int! } type ReadGroupQcEdge { node: ReadGroupQc cursor: String! } type ReadGroupQcs { hits(offset: Int, sort: [Sort], filters: FiltersArgument, cohort_id: String, case_filters: FiltersArgument, before: String, after: String, first: Int, last: Int): ReadGroupQcConnection } type ReadGroups { hits(offset: Int, sort: [Sort], filters: FiltersArgument, cohort_id: String, case_filters: FiltersArgument, before: String, after: String, first: Int, last: Int): ReadGroupConnection } input RelayIsDumb { relay_is_dumb: FiltersArgument } type RemoveFromCaseSet { set_id: String size: Int time: Float set_type: String intent: String } type RemoveFromExploreSet { case(input: RemoveFromSetInput): RemoveFromCaseSet gene(input: RemoveFromSetInput): RemoveFromGeneSet ssm(input: RemoveFromSetInput): RemoveFromSsmSet } type RemoveFromGeneSet { set_id: String size: Int time: Float set_type: String intent: String } type RemoveFromRepositoryCaseSet { set_id: String size: Int time: Float set_type: String intent: String } type RemoveFromRepositoryFileSet { set_id: String size: Int time: Float set_type: String intent: String } type RemoveFromRepositorySet { case(input: RemoveFromSetInput): RemoveFromRepositoryCaseSet file(input: RemoveFromSetInput): RemoveFromRepositoryFileSet } type RemoveFromSet { explore: RemoveFromExploreSet repository: RemoveFromRepositorySet } input RemoveFromSetInput { filters: FiltersArgument! cohort_id: String case_filters: FiltersArgument set_id: String! set_type: SetType intent: Intent } type RemoveFromSsmSet { set_id: String size: Int time: Float set_type: String intent: String } type Repository { cases: RepositoryCases files: Files } type RepositoryCases { facets(filters: FiltersArgument, facets: [String]!): JSONString aggregations(filters: FiltersArgument, cohort_id: String, case_filters: FiltersArgument, aggregations_filter_themselves: Boolean = true): CaseAggregations hits(score: String, query: String, offset: Int, sort: [Sort], filters: FiltersArgument, cohort_id: String, case_filters: FiltersArgument, before: String, after: String, first: Int, last: Int): CaseConnection } type Root { node(id: ID!): Node viewer: Root user: User query(query: String, types: [String], first: Int, offset: Int): QueryResults repository: Repository explore: Explore annotations: Annotations projects: Projects cart_summary: CartSummary analysis: Analysis } type SSMConsequence implements Node { id: ID! transcript: ConsequenceTranscript consequence_id: String score: Int } type SSMConsequenceConnection { pageInfo: PageInfo! edges: [SSMConsequenceEdge]! total: Int! } type SSMConsequenceEdge { node: SSMConsequence cursor: String! } type SSMConsequences { hits(offset: Int, sort: [Sort], filters: FiltersArgument, cohort_id: String, case_filters: FiltersArgument, before: String, after: String, first: Int, last: Int): SSMConsequenceConnection } type SSMObservation implements Node { id: ID! input_bam_file: InputBamFile read_depth: ReadDepth sample: SSMObservationSample tumor_genotype: TumorGenotype validation: Validation variant_calling: SSMVariantCalling center: String mutation_status: String observation_id: String score: Int } type SSMObservationConnection { pageInfo: PageInfo! edges: [SSMObservationEdge]! total: Int! } type SSMObservationEdge { node: SSMObservation cursor: String! } type SSMObservationSample { matched_norm_sample_barcode: String matched_norm_sample_uuid: String tumor_sample_barcode: String tumor_sample_uuid: String id: String } type SSMObservations { hits(offset: Int, sort: [Sort], filters: FiltersArgument, cohort_id: String, case_filters: FiltersArgument, before: String, after: String, first: Int, last: Int): SSMObservationConnection } type SSMOccurrence implements Node { id: ID! case: SsmOccurrenceCase occurrence_id: String score: Int } type SSMOccurrenceConnection { pageInfo: PageInfo! edges: [SSMOccurrenceEdge]! total: Int! } type SSMOccurrenceEdge { node: SSMOccurrence cursor: String! } type SSMOccurrences { hits(offset: Int, sort: [Sort], filters: FiltersArgument, cohort_id: String, case_filters: FiltersArgument, before: String, after: String, first: Int, last: Int): SSMOccurrenceConnection } type SSMVariantCalling { variant_caller: String variant_process: String id: String } type Sample implements Node { id: ID! annotations: CaseAnnotations portions: Portions biospecimen_anatomic_site: String biospecimen_laterality: String catalog_reference: String created_datetime: String current_weight: Float days_to_collection: Float days_to_sample_procurement: Float diagnosis_pathologically_confirmed: String distance_normal_to_tumor: String distributor_reference: String freezing_method: String growth_rate: Float initial_weight: Float intermediate_dimension: Float longest_dimension: Float method_of_sample_procurement: String passage_count: Float pathology_report_uuid: String preservation_method: String sample_id: String sample_ordinal: Float sample_type: String shortest_dimension: Float specimen_type: String state: String submitter_id: String time_between_clamping_and_freezing: Float time_between_excision_and_freezing: Float tissue_collection_type: String tissue_type: String tumor_descriptor: String updated_datetime: String score: Int } type SampleConnection { pageInfo: PageInfo! edges: [SampleEdge]! total: Int! } type SampleEdge { node: Sample cursor: String! } type Samples { hits(offset: Int, sort: [Sort], filters: FiltersArgument, cohort_id: String, case_filters: FiltersArgument, before: String, after: String, first: Int, last: Int): SampleConnection } type SegmentCnvNode implements Node { id: ID! chromosome: String cnv_change: String cnv_change_5_category: String end_position: Float length: Float segment_cnv_autocomplete: String segment_cnv_id: String start_position: Float occurrence: SegmentCnvOccurrences score: Int } type SegmentCnvNodeConnection { pageInfo: PageInfo! edges: [SegmentCnvNodeEdge]! total: Int! } type SegmentCnvNodeEdge { node: SegmentCnvNode cursor: String! } type SegmentCnvObservation implements Node { id: ID! sample: SegmentCnvObservationSample variant_calling: SegmentCnvVariantCalling copy_number: Float observation_id: String sample_ploidy_integer: Float src_file_id: String variant_status: String score: Int } type SegmentCnvObservationConnection { pageInfo: PageInfo! edges: [SegmentCnvObservationEdge]! total: Int! } type SegmentCnvObservationEdge { node: SegmentCnvObservation cursor: String! } type SegmentCnvObservationSample { tumor_sample_barcode: String tumor_sample_uuid: String id: String } type SegmentCnvObservations { hits(offset: Int, sort: [Sort], filters: FiltersArgument, cohort_id: String, case_filters: FiltersArgument, before: String, after: String, first: Int, last: Int): SegmentCnvObservationConnection } type SegmentCnvOccurrence implements Node { id: ID! case: SegmentCnvOccurrenceCase occurrence_id: String score: Int } type SegmentCnvOccurrenceCase { available_variation_data: [String] demographic: EDemographic diagnoses: EDiagnoses exposures: EExposures family_histories: EFamilyHistories observations: SegmentCnvObservations project: Project tissue_source_type: ETissueSourceSite case_id: String consent_type: String days_to_consent: Float disease_type: String index_date: String lost_to_followup: String primary_site: String state: String submitter_id: String id: String } type SegmentCnvOccurrenceConnection { pageInfo: PageInfo! edges: [SegmentCnvOccurrenceEdge]! total: Int! } type SegmentCnvOccurrenceEdge { node: SegmentCnvOccurrence cursor: String! } type SegmentCnvOccurrences { hits(offset: Int, sort: [Sort], filters: FiltersArgument, cohort_id: String, case_filters: FiltersArgument, before: String, after: String, first: Int, last: Int): SegmentCnvOccurrenceConnection } type SegmentCnvVariantCalling { variant_caller: String id: String } type SegmentCnvs { facets(filters: FiltersArgument, facets: [String]!): JSONString aggregations(filters: FiltersArgument, cohort_id: String, case_filters: FiltersArgument, aggregations_filter_themselves: Boolean = true): SegmentCnvsAggregations hits(score: String, query: String, offset: Int, sort: [Sort], filters: FiltersArgument, cohort_id: String, case_filters: FiltersArgument, before: String, after: String, first: Int, last: Int): SegmentCnvNodeConnection } type SegmentCnvsAggregations { chromosome: Aggregations cnv_change: Aggregations cnv_change_5_category: Aggregations end_position: NumericAggregations length: NumericAggregations occurrence__case__available_variation_data: Aggregations occurrence__case__case_id: Aggregations occurrence__case__consent_type: Aggregations occurrence__case__days_to_consent: NumericAggregations occurrence__case__demographic__age_at_index: NumericAggregations occurrence__case__demographic__age_is_obfuscated: Aggregations occurrence__case__demographic__cause_of_death: Aggregations occurrence__case__demographic__days_to_birth: NumericAggregations occurrence__case__demographic__days_to_death: NumericAggregations occurrence__case__demographic__demographic_id: Aggregations occurrence__case__demographic__ethnicity: Aggregations occurrence__case__demographic__race: Aggregations occurrence__case__demographic__sex_at_birth: Aggregations occurrence__case__demographic__state: Aggregations occurrence__case__demographic__submitter_id: Aggregations occurrence__case__demographic__vital_status: Aggregations occurrence__case__demographic__year_of_birth: NumericAggregations occurrence__case__demographic__year_of_death: NumericAggregations occurrence__case__diagnoses__age_at_diagnosis: NumericAggregations occurrence__case__diagnoses__ajcc_clinical_m: Aggregations occurrence__case__diagnoses__ajcc_clinical_n: Aggregations occurrence__case__diagnoses__ajcc_clinical_stage: Aggregations occurrence__case__diagnoses__ajcc_clinical_t: Aggregations occurrence__case__diagnoses__ajcc_pathologic_m: Aggregations occurrence__case__diagnoses__ajcc_pathologic_n: Aggregations occurrence__case__diagnoses__ajcc_pathologic_stage: Aggregations occurrence__case__diagnoses__ajcc_pathologic_t: Aggregations occurrence__case__diagnoses__ajcc_staging_system_edition: Aggregations occurrence__case__diagnoses__ann_arbor_b_symptoms: Aggregations occurrence__case__diagnoses__ann_arbor_clinical_stage: Aggregations occurrence__case__diagnoses__ann_arbor_extranodal_involvement: Aggregations occurrence__case__diagnoses__ann_arbor_pathologic_stage: Aggregations occurrence__case__diagnoses__burkitt_lymphoma_clinical_variant: Aggregations occurrence__case__diagnoses__classification_of_tumor: Aggregations occurrence__case__diagnoses__cog_renal_stage: Aggregations occurrence__case__diagnoses__days_to_diagnosis: NumericAggregations occurrence__case__diagnoses__days_to_last_follow_up: NumericAggregations occurrence__case__diagnoses__days_to_last_known_disease_status: NumericAggregations occurrence__case__diagnoses__days_to_recurrence: NumericAggregations occurrence__case__diagnoses__diagnosis_id: Aggregations occurrence__case__diagnoses__diagnosis_is_primary_disease: Aggregations occurrence__case__diagnoses__esophageal_columnar_dysplasia_degree: Aggregations occurrence__case__diagnoses__esophageal_columnar_metaplasia_present: Aggregations occurrence__case__diagnoses__figo_stage: Aggregations occurrence__case__diagnoses__figo_staging_edition_year: Aggregations occurrence__case__diagnoses__gastric_esophageal_junction_involvement: Aggregations occurrence__case__diagnoses__goblet_cells_columnar_mucosa_present: Aggregations occurrence__case__diagnoses__icd_10_code: Aggregations occurrence__case__diagnoses__igcccg_stage: Aggregations occurrence__case__diagnoses__inss_stage: Aggregations occurrence__case__diagnoses__international_prognostic_index: Aggregations occurrence__case__diagnoses__iss_stage: Aggregations occurrence__case__diagnoses__last_known_disease_status: Aggregations occurrence__case__diagnoses__laterality: Aggregations occurrence__case__diagnoses__masaoka_stage: Aggregations occurrence__case__diagnoses__metastasis_at_diagnosis: Aggregations occurrence__case__diagnoses__method_of_diagnosis: Aggregations occurrence__case__diagnoses__morphology: Aggregations occurrence__case__diagnoses__pathology_details__anaplasia_present: Aggregations occurrence__case__diagnoses__pathology_details__anaplasia_present_type: Aggregations occurrence__case__diagnoses__pathology_details__bone_marrow_malignant_cells: Aggregations occurrence__case__diagnoses__pathology_details__breslow_thickness: NumericAggregations occurrence__case__diagnoses__pathology_details__circumferential_resection_margin: NumericAggregations occurrence__case__diagnoses__pathology_details__columnar_mucosa_present: Aggregations occurrence__case__diagnoses__pathology_details__dysplasia_degree: Aggregations occurrence__case__diagnoses__pathology_details__dysplasia_type: Aggregations occurrence__case__diagnoses__pathology_details__greatest_tumor_dimension: NumericAggregations occurrence__case__diagnoses__pathology_details__gross_tumor_weight: NumericAggregations occurrence__case__diagnoses__pathology_details__largest_extrapelvic_peritoneal_focus: Aggregations occurrence__case__diagnoses__pathology_details__lymph_node_involved_site: Aggregations occurrence__case__diagnoses__pathology_details__lymph_node_involvement: Aggregations occurrence__case__diagnoses__pathology_details__lymph_nodes_positive: NumericAggregations occurrence__case__diagnoses__pathology_details__lymph_nodes_tested: NumericAggregations occurrence__case__diagnoses__pathology_details__lymphatic_invasion_present: Aggregations occurrence__case__diagnoses__pathology_details__margin_status: Aggregations occurrence__case__diagnoses__pathology_details__metaplasia_present: Aggregations occurrence__case__diagnoses__pathology_details__morphologic_architectural_pattern: Aggregations occurrence__case__diagnoses__pathology_details__non_nodal_regional_disease: Aggregations occurrence__case__diagnoses__pathology_details__non_nodal_tumor_deposits: Aggregations occurrence__case__diagnoses__pathology_details__number_proliferating_cells: NumericAggregations occurrence__case__diagnoses__pathology_details__pathology_detail_id: Aggregations occurrence__case__diagnoses__pathology_details__percent_tumor_invasion: NumericAggregations occurrence__case__diagnoses__pathology_details__perineural_invasion_present: Aggregations occurrence__case__diagnoses__pathology_details__peripancreatic_lymph_nodes_positive: Aggregations occurrence__case__diagnoses__pathology_details__peripancreatic_lymph_nodes_tested: NumericAggregations occurrence__case__diagnoses__pathology_details__prostatic_chips_positive_count: NumericAggregations occurrence__case__diagnoses__pathology_details__prostatic_chips_total_count: NumericAggregations occurrence__case__diagnoses__pathology_details__prostatic_involvement_percent: NumericAggregations occurrence__case__diagnoses__pathology_details__state: Aggregations occurrence__case__diagnoses__pathology_details__submitter_id: Aggregations occurrence__case__diagnoses__pathology_details__transglottic_extension: Aggregations occurrence__case__diagnoses__pathology_details__tumor_largest_dimension_diameter: NumericAggregations occurrence__case__diagnoses__pathology_details__vascular_invasion_present: Aggregations occurrence__case__diagnoses__pathology_details__vascular_invasion_type: Aggregations occurrence__case__diagnoses__primary_diagnosis: Aggregations occurrence__case__diagnoses__primary_gleason_grade: Aggregations occurrence__case__diagnoses__prior_malignancy: Aggregations occurrence__case__diagnoses__prior_treatment: Aggregations occurrence__case__diagnoses__progression_or_recurrence: Aggregations occurrence__case__diagnoses__residual_disease: Aggregations occurrence__case__diagnoses__secondary_gleason_grade: Aggregations occurrence__case__diagnoses__site_of_resection_or_biopsy: Aggregations occurrence__case__diagnoses__state: Aggregations occurrence__case__diagnoses__submitter_id: Aggregations occurrence__case__diagnoses__synchronous_malignancy: Aggregations occurrence__case__diagnoses__tissue_or_organ_of_origin: Aggregations occurrence__case__diagnoses__treatments__chemo_concurrent_to_radiation: Aggregations occurrence__case__diagnoses__treatments__days_to_treatment_end: NumericAggregations occurrence__case__diagnoses__treatments__days_to_treatment_start: NumericAggregations occurrence__case__diagnoses__treatments__initial_disease_status: Aggregations occurrence__case__diagnoses__treatments__number_of_cycles: NumericAggregations occurrence__case__diagnoses__treatments__regimen_or_line_of_therapy: Aggregations occurrence__case__diagnoses__treatments__state: Aggregations occurrence__case__diagnoses__treatments__submitter_id: Aggregations occurrence__case__diagnoses__treatments__therapeutic_agents: Aggregations occurrence__case__diagnoses__treatments__treatment_dose: NumericAggregations occurrence__case__diagnoses__treatments__treatment_frequency: Aggregations occurrence__case__diagnoses__treatments__treatment_id: Aggregations occurrence__case__diagnoses__treatments__treatment_intent_type: Aggregations occurrence__case__diagnoses__treatments__treatment_or_therapy: Aggregations occurrence__case__diagnoses__treatments__treatment_outcome: Aggregations occurrence__case__diagnoses__treatments__treatment_type: Aggregations occurrence__case__diagnoses__treatments__treatment_type_administered: Aggregations occurrence__case__diagnoses__tumor_grade: Aggregations occurrence__case__diagnoses__year_of_diagnosis: NumericAggregations occurrence__case__disease_type: Aggregations occurrence__case__exposures__alcohol_days_per_week: NumericAggregations occurrence__case__exposures__alcohol_history: Aggregations occurrence__case__exposures__alcohol_intensity: Aggregations occurrence__case__exposures__cigarettes_per_day: NumericAggregations occurrence__case__exposures__exposure_id: Aggregations occurrence__case__exposures__pack_years_smoked: NumericAggregations occurrence__case__exposures__state: Aggregations occurrence__case__exposures__submitter_id: Aggregations occurrence__case__exposures__tobacco_smoking_onset_year: NumericAggregations occurrence__case__exposures__tobacco_smoking_quit_year: NumericAggregations occurrence__case__exposures__tobacco_smoking_status: Aggregations occurrence__case__family_histories__family_history_id: Aggregations occurrence__case__family_histories__relationship_age_at_diagnosis: NumericAggregations occurrence__case__family_histories__relationship_primary_diagnosis: Aggregations occurrence__case__family_histories__relationship_type: Aggregations occurrence__case__family_histories__relative_with_cancer_history: Aggregations occurrence__case__family_histories__state: Aggregations occurrence__case__family_histories__submitter_id: Aggregations occurrence__case__follow_ups__days_to_follow_up: NumericAggregations occurrence__case__follow_ups__follow_up_id: Aggregations occurrence__case__follow_ups__molecular_tests__gene_symbol: Aggregations occurrence__case__follow_ups__molecular_tests__molecular_analysis_method: Aggregations occurrence__case__follow_ups__molecular_tests__molecular_test_id: Aggregations occurrence__case__follow_ups__molecular_tests__submitter_id: Aggregations occurrence__case__follow_ups__molecular_tests__test_result: Aggregations occurrence__case__follow_ups__other_clinical_attributes__other_clinical_attribute_id: Aggregations occurrence__case__follow_ups__other_clinical_attributes__submitter_id: Aggregations occurrence__case__follow_ups__submitter_id: Aggregations occurrence__case__index_date: Aggregations occurrence__case__lost_to_followup: Aggregations occurrence__case__observation__copy_number: NumericAggregations occurrence__case__observation__observation_id: Aggregations occurrence__case__observation__sample__tumor_sample_barcode: Aggregations occurrence__case__observation__sample__tumor_sample_uuid: Aggregations occurrence__case__observation__sample_ploidy_integer: NumericAggregations occurrence__case__observation__src_file_id: Aggregations occurrence__case__observation__variant_calling__variant_caller: Aggregations occurrence__case__observation__variant_status: Aggregations occurrence__case__primary_site: Aggregations occurrence__case__project__dbgap_accession_number: Aggregations occurrence__case__project__disease_type: Aggregations occurrence__case__project__intended_release_date: Aggregations occurrence__case__project__name: Aggregations occurrence__case__project__primary_site: Aggregations occurrence__case__project__program__dbgap_accession_number: Aggregations occurrence__case__project__program__name: Aggregations occurrence__case__project__program__program_id: Aggregations occurrence__case__project__project_id: Aggregations occurrence__case__project__releasable: Aggregations occurrence__case__project__released: Aggregations occurrence__case__project__state: Aggregations occurrence__case__samples__portions__analytes__aliquots__aliquot_id: Aggregations occurrence__case__samples__portions__analytes__aliquots__submitter_id: Aggregations occurrence__case__samples__portions__analytes__analyte_id: Aggregations occurrence__case__samples__portions__analytes__analyte_type: Aggregations occurrence__case__samples__portions__analytes__submitter_id: Aggregations occurrence__case__samples__portions__portion_id: Aggregations occurrence__case__samples__portions__slides__section_location: Aggregations occurrence__case__samples__portions__slides__slide_id: Aggregations occurrence__case__samples__portions__slides__submitter_id: Aggregations occurrence__case__samples__portions__submitter_id: Aggregations occurrence__case__samples__preservation_method: Aggregations occurrence__case__samples__sample_id: Aggregations occurrence__case__samples__sample_type: Aggregations occurrence__case__samples__specimen_type: Aggregations occurrence__case__samples__submitter_id: Aggregations occurrence__case__samples__tissue_type: Aggregations occurrence__case__samples__tumor_descriptor: Aggregations occurrence__case__state: Aggregations occurrence__case__submitter_id: Aggregations occurrence__case__tissue_source_site__bcr_id: Aggregations occurrence__case__tissue_source_site__code: Aggregations occurrence__case__tissue_source_site__name: Aggregations occurrence__case__tissue_source_site__project: Aggregations occurrence__case__tissue_source_site__tissue_source_site_id: Aggregations occurrence__occurrence_id: Aggregations segment_cnv_autocomplete: Aggregations segment_cnv_id: Aggregations start_position: NumericAggregations } enum SetType { instant ephemeral mutable frozen } type Sets { create: CreateSet append: AppendSet remove_from: RemoveFromSet } type Slide implements Node { id: ID! annotations: CaseAnnotations bone_marrow_malignant_cells: String created_datetime: String number_proliferating_cells: Float percent_eosinophil_infiltration: Float percent_follicular_component: Float percent_granulocyte_infiltration: Float percent_inflam_infiltration: Float percent_lymphocyte_infiltration: Float percent_monocyte_infiltration: Float percent_necrosis: Float percent_neutrophil_infiltration: Float percent_normal_cells: Float percent_rhabdoid_features: Float percent_sarcomatoid_features: Float percent_stromal_cells: Float percent_tumor_cells: Float percent_tumor_nuclei: Float prostatic_chips_positive_count: Float prostatic_chips_total_count: Float prostatic_involvement_percent: Float section_location: String slide_id: String state: String submitter_id: String tissue_microarray_coordinates: String updated_datetime: String score: Int } type SlideConnection { pageInfo: PageInfo! edges: [SlideEdge]! total: Int! } type SlideEdge { node: Slide cursor: String! } type Slides { hits(offset: Int, sort: [Sort], filters: FiltersArgument, cohort_id: String, case_filters: FiltersArgument, before: String, after: String, first: Int, last: Int): SlideConnection } input Sort { field: String! order: Order mode: Mode missing: Missing } type Ssm implements Node { id: ID! chromosome: String end_position: Float genomic_dna_change: String mutation_subtype: String mutation_type: String ncbi_build: String reference_allele: String ssm_autocomplete: String ssm_id: String start_position: Float tumor_allele: String clinical_annotations: ClinicalAnnotations consequence: SSMConsequences cosmic_id: [String] external_db_ids: SsmGeneExternalDbIds gene_aa_change: [String] occurrence: SSMOccurrences score: Int } type SsmAggregations { chromosome: Aggregations clinical_annotations__civic__gene_id: Aggregations clinical_annotations__civic__variant_id: Aggregations consequence__consequence_id: Aggregations consequence__transcript__aa_change: Aggregations consequence__transcript__aa_end: NumericAggregations consequence__transcript__aa_start: NumericAggregations consequence__transcript__annotation__amino_acids: Aggregations consequence__transcript__annotation__ccds: Aggregations consequence__transcript__annotation__cdna_position: Aggregations consequence__transcript__annotation__cds_end: NumericAggregations consequence__transcript__annotation__cds_length: NumericAggregations consequence__transcript__annotation__cds_position: Aggregations consequence__transcript__annotation__cds_start: NumericAggregations consequence__transcript__annotation__clin_sig: Aggregations consequence__transcript__annotation__codons: Aggregations consequence__transcript__annotation__dbsnp_rs: Aggregations consequence__transcript__annotation__dbsnp_val_status: Aggregations consequence__transcript__annotation__domains: Aggregations consequence__transcript__annotation__ensp: Aggregations consequence__transcript__annotation__existing_variation: Aggregations consequence__transcript__annotation__hgvsc: Aggregations consequence__transcript__annotation__hgvsp: Aggregations consequence__transcript__annotation__hgvsp_short: Aggregations consequence__transcript__annotation__polyphen_impact: Aggregations consequence__transcript__annotation__polyphen_score: NumericAggregations consequence__transcript__annotation__protein_position: Aggregations consequence__transcript__annotation__pubmed: Aggregations consequence__transcript__annotation__sift_impact: Aggregations consequence__transcript__annotation__sift_score: NumericAggregations consequence__transcript__annotation__swissprot: Aggregations consequence__transcript__annotation__transcript_id: Aggregations consequence__transcript__annotation__trembl: Aggregations consequence__transcript__annotation__uniparc: Aggregations consequence__transcript__annotation__vep_impact: Aggregations consequence__transcript__consequence_type: Aggregations consequence__transcript__gene__biotype: Aggregations consequence__transcript__gene__canonical_transcript_id: Aggregations consequence__transcript__gene__cytoband: Aggregations consequence__transcript__gene__external_db_ids__entrez_gene: Aggregations consequence__transcript__gene__external_db_ids__hgnc: Aggregations consequence__transcript__gene__external_db_ids__omim_gene: Aggregations consequence__transcript__gene__external_db_ids__uniprotkb_swissprot: Aggregations consequence__transcript__gene__gene_chromosome: Aggregations consequence__transcript__gene__gene_end: NumericAggregations consequence__transcript__gene__gene_id: Aggregations consequence__transcript__gene__gene_start: NumericAggregations consequence__transcript__gene__gene_strand: NumericAggregations consequence__transcript__gene__is_cancer_gene_census: Aggregations consequence__transcript__gene__symbol: Aggregations consequence__transcript__gene__synonyms: Aggregations consequence__transcript__is_canonical: Aggregations consequence__transcript__ref_seq_accession: Aggregations consequence__transcript__transcript_id: Aggregations cosmic_id: Aggregations end_position: NumericAggregations gene_aa_change: Aggregations genomic_dna_change: Aggregations mutation_subtype: Aggregations mutation_type: Aggregations ncbi_build: Aggregations occurrence__case__available_variation_data: Aggregations occurrence__case__case_id: Aggregations occurrence__case__consent_type: Aggregations occurrence__case__days_to_consent: NumericAggregations occurrence__case__demographic__age_at_index: NumericAggregations occurrence__case__demographic__age_is_obfuscated: Aggregations occurrence__case__demographic__cause_of_death: Aggregations occurrence__case__demographic__days_to_birth: NumericAggregations occurrence__case__demographic__days_to_death: NumericAggregations occurrence__case__demographic__demographic_id: Aggregations occurrence__case__demographic__ethnicity: Aggregations occurrence__case__demographic__race: Aggregations occurrence__case__demographic__sex_at_birth: Aggregations occurrence__case__demographic__state: Aggregations occurrence__case__demographic__submitter_id: Aggregations occurrence__case__demographic__vital_status: Aggregations occurrence__case__demographic__year_of_birth: NumericAggregations occurrence__case__demographic__year_of_death: NumericAggregations occurrence__case__diagnoses__age_at_diagnosis: NumericAggregations occurrence__case__diagnoses__ajcc_clinical_m: Aggregations occurrence__case__diagnoses__ajcc_clinical_n: Aggregations occurrence__case__diagnoses__ajcc_clinical_stage: Aggregations occurrence__case__diagnoses__ajcc_clinical_t: Aggregations occurrence__case__diagnoses__ajcc_pathologic_m: Aggregations occurrence__case__diagnoses__ajcc_pathologic_n: Aggregations occurrence__case__diagnoses__ajcc_pathologic_stage: Aggregations occurrence__case__diagnoses__ajcc_pathologic_t: Aggregations occurrence__case__diagnoses__ajcc_staging_system_edition: Aggregations occurrence__case__diagnoses__ann_arbor_b_symptoms: Aggregations occurrence__case__diagnoses__ann_arbor_clinical_stage: Aggregations occurrence__case__diagnoses__ann_arbor_extranodal_involvement: Aggregations occurrence__case__diagnoses__ann_arbor_pathologic_stage: Aggregations occurrence__case__diagnoses__burkitt_lymphoma_clinical_variant: Aggregations occurrence__case__diagnoses__classification_of_tumor: Aggregations occurrence__case__diagnoses__cog_renal_stage: Aggregations occurrence__case__diagnoses__days_to_diagnosis: NumericAggregations occurrence__case__diagnoses__days_to_last_follow_up: NumericAggregations occurrence__case__diagnoses__days_to_last_known_disease_status: NumericAggregations occurrence__case__diagnoses__days_to_recurrence: NumericAggregations occurrence__case__diagnoses__diagnosis_id: Aggregations occurrence__case__diagnoses__diagnosis_is_primary_disease: Aggregations occurrence__case__diagnoses__esophageal_columnar_dysplasia_degree: Aggregations occurrence__case__diagnoses__esophageal_columnar_metaplasia_present: Aggregations occurrence__case__diagnoses__figo_stage: Aggregations occurrence__case__diagnoses__figo_staging_edition_year: Aggregations occurrence__case__diagnoses__gastric_esophageal_junction_involvement: Aggregations occurrence__case__diagnoses__goblet_cells_columnar_mucosa_present: Aggregations occurrence__case__diagnoses__icd_10_code: Aggregations occurrence__case__diagnoses__igcccg_stage: Aggregations occurrence__case__diagnoses__inss_stage: Aggregations occurrence__case__diagnoses__international_prognostic_index: Aggregations occurrence__case__diagnoses__iss_stage: Aggregations occurrence__case__diagnoses__last_known_disease_status: Aggregations occurrence__case__diagnoses__laterality: Aggregations occurrence__case__diagnoses__masaoka_stage: Aggregations occurrence__case__diagnoses__metastasis_at_diagnosis: Aggregations occurrence__case__diagnoses__method_of_diagnosis: Aggregations occurrence__case__diagnoses__morphology: Aggregations occurrence__case__diagnoses__pathology_details__anaplasia_present: Aggregations occurrence__case__diagnoses__pathology_details__anaplasia_present_type: Aggregations occurrence__case__diagnoses__pathology_details__bone_marrow_malignant_cells: Aggregations occurrence__case__diagnoses__pathology_details__breslow_thickness: NumericAggregations occurrence__case__diagnoses__pathology_details__circumferential_resection_margin: NumericAggregations occurrence__case__diagnoses__pathology_details__columnar_mucosa_present: Aggregations occurrence__case__diagnoses__pathology_details__dysplasia_degree: Aggregations occurrence__case__diagnoses__pathology_details__dysplasia_type: Aggregations occurrence__case__diagnoses__pathology_details__greatest_tumor_dimension: NumericAggregations occurrence__case__diagnoses__pathology_details__gross_tumor_weight: NumericAggregations occurrence__case__diagnoses__pathology_details__largest_extrapelvic_peritoneal_focus: Aggregations occurrence__case__diagnoses__pathology_details__lymph_node_involved_site: Aggregations occurrence__case__diagnoses__pathology_details__lymph_node_involvement: Aggregations occurrence__case__diagnoses__pathology_details__lymph_nodes_positive: NumericAggregations occurrence__case__diagnoses__pathology_details__lymph_nodes_tested: NumericAggregations occurrence__case__diagnoses__pathology_details__lymphatic_invasion_present: Aggregations occurrence__case__diagnoses__pathology_details__margin_status: Aggregations occurrence__case__diagnoses__pathology_details__metaplasia_present: Aggregations occurrence__case__diagnoses__pathology_details__morphologic_architectural_pattern: Aggregations occurrence__case__diagnoses__pathology_details__non_nodal_regional_disease: Aggregations occurrence__case__diagnoses__pathology_details__non_nodal_tumor_deposits: Aggregations occurrence__case__diagnoses__pathology_details__number_proliferating_cells: NumericAggregations occurrence__case__diagnoses__pathology_details__pathology_detail_id: Aggregations occurrence__case__diagnoses__pathology_details__percent_tumor_invasion: NumericAggregations occurrence__case__diagnoses__pathology_details__perineural_invasion_present: Aggregations occurrence__case__diagnoses__pathology_details__peripancreatic_lymph_nodes_positive: Aggregations occurrence__case__diagnoses__pathology_details__peripancreatic_lymph_nodes_tested: NumericAggregations occurrence__case__diagnoses__pathology_details__prostatic_chips_positive_count: NumericAggregations occurrence__case__diagnoses__pathology_details__prostatic_chips_total_count: NumericAggregations occurrence__case__diagnoses__pathology_details__prostatic_involvement_percent: NumericAggregations occurrence__case__diagnoses__pathology_details__state: Aggregations occurrence__case__diagnoses__pathology_details__submitter_id: Aggregations occurrence__case__diagnoses__pathology_details__transglottic_extension: Aggregations occurrence__case__diagnoses__pathology_details__tumor_largest_dimension_diameter: NumericAggregations occurrence__case__diagnoses__pathology_details__vascular_invasion_present: Aggregations occurrence__case__diagnoses__pathology_details__vascular_invasion_type: Aggregations occurrence__case__diagnoses__primary_diagnosis: Aggregations occurrence__case__diagnoses__primary_gleason_grade: Aggregations occurrence__case__diagnoses__prior_malignancy: Aggregations occurrence__case__diagnoses__prior_treatment: Aggregations occurrence__case__diagnoses__progression_or_recurrence: Aggregations occurrence__case__diagnoses__residual_disease: Aggregations occurrence__case__diagnoses__secondary_gleason_grade: Aggregations occurrence__case__diagnoses__site_of_resection_or_biopsy: Aggregations occurrence__case__diagnoses__state: Aggregations occurrence__case__diagnoses__submitter_id: Aggregations occurrence__case__diagnoses__synchronous_malignancy: Aggregations occurrence__case__diagnoses__tissue_or_organ_of_origin: Aggregations occurrence__case__diagnoses__treatments__chemo_concurrent_to_radiation: Aggregations occurrence__case__diagnoses__treatments__days_to_treatment_end: NumericAggregations occurrence__case__diagnoses__treatments__days_to_treatment_start: NumericAggregations occurrence__case__diagnoses__treatments__initial_disease_status: Aggregations occurrence__case__diagnoses__treatments__number_of_cycles: NumericAggregations occurrence__case__diagnoses__treatments__regimen_or_line_of_therapy: Aggregations occurrence__case__diagnoses__treatments__state: Aggregations occurrence__case__diagnoses__treatments__submitter_id: Aggregations occurrence__case__diagnoses__treatments__therapeutic_agents: Aggregations occurrence__case__diagnoses__treatments__treatment_dose: NumericAggregations occurrence__case__diagnoses__treatments__treatment_frequency: Aggregations occurrence__case__diagnoses__treatments__treatment_id: Aggregations occurrence__case__diagnoses__treatments__treatment_intent_type: Aggregations occurrence__case__diagnoses__treatments__treatment_or_therapy: Aggregations occurrence__case__diagnoses__treatments__treatment_outcome: Aggregations occurrence__case__diagnoses__treatments__treatment_type: Aggregations occurrence__case__diagnoses__treatments__treatment_type_administered: Aggregations occurrence__case__diagnoses__tumor_grade: Aggregations occurrence__case__diagnoses__year_of_diagnosis: NumericAggregations occurrence__case__disease_type: Aggregations occurrence__case__exposures__alcohol_days_per_week: NumericAggregations occurrence__case__exposures__alcohol_history: Aggregations occurrence__case__exposures__alcohol_intensity: Aggregations occurrence__case__exposures__cigarettes_per_day: NumericAggregations occurrence__case__exposures__exposure_id: Aggregations occurrence__case__exposures__pack_years_smoked: NumericAggregations occurrence__case__exposures__state: Aggregations occurrence__case__exposures__submitter_id: Aggregations occurrence__case__exposures__tobacco_smoking_onset_year: NumericAggregations occurrence__case__exposures__tobacco_smoking_quit_year: NumericAggregations occurrence__case__exposures__tobacco_smoking_status: Aggregations occurrence__case__family_histories__family_history_id: Aggregations occurrence__case__family_histories__relationship_age_at_diagnosis: NumericAggregations occurrence__case__family_histories__relationship_primary_diagnosis: Aggregations occurrence__case__family_histories__relationship_type: Aggregations occurrence__case__family_histories__relative_with_cancer_history: Aggregations occurrence__case__family_histories__state: Aggregations occurrence__case__family_histories__submitter_id: Aggregations occurrence__case__follow_ups__days_to_follow_up: NumericAggregations occurrence__case__follow_ups__follow_up_id: Aggregations occurrence__case__follow_ups__molecular_tests__gene_symbol: Aggregations occurrence__case__follow_ups__molecular_tests__molecular_analysis_method: Aggregations occurrence__case__follow_ups__molecular_tests__molecular_test_id: Aggregations occurrence__case__follow_ups__molecular_tests__submitter_id: Aggregations occurrence__case__follow_ups__molecular_tests__test_result: Aggregations occurrence__case__follow_ups__other_clinical_attributes__other_clinical_attribute_id: Aggregations occurrence__case__follow_ups__other_clinical_attributes__submitter_id: Aggregations occurrence__case__follow_ups__submitter_id: Aggregations occurrence__case__index_date: Aggregations occurrence__case__lost_to_followup: Aggregations occurrence__case__observation__center: Aggregations occurrence__case__observation__input_bam_file__normal_bam_uuid: Aggregations occurrence__case__observation__input_bam_file__tumor_bam_uuid: Aggregations occurrence__case__observation__mutation_status: Aggregations occurrence__case__observation__normal_genotype__match_norm_seq_allele1: Aggregations occurrence__case__observation__normal_genotype__match_norm_seq_allele2: Aggregations occurrence__case__observation__observation_id: Aggregations occurrence__case__observation__read_depth__n_depth: NumericAggregations occurrence__case__observation__read_depth__t_alt_count: NumericAggregations occurrence__case__observation__read_depth__t_depth: NumericAggregations occurrence__case__observation__read_depth__t_ref_count: NumericAggregations occurrence__case__observation__sample__matched_norm_sample_barcode: Aggregations occurrence__case__observation__sample__matched_norm_sample_uuid: Aggregations occurrence__case__observation__sample__tumor_sample_barcode: Aggregations occurrence__case__observation__sample__tumor_sample_uuid: Aggregations occurrence__case__observation__tumor_genotype__tumor_seq_allele1: Aggregations occurrence__case__observation__tumor_genotype__tumor_seq_allele2: Aggregations occurrence__case__observation__validation__tumor_validation_allele1: Aggregations occurrence__case__observation__validation__tumor_validation_allele2: Aggregations occurrence__case__observation__validation__validation_method: Aggregations occurrence__case__observation__variant_calling__variant_caller: Aggregations occurrence__case__observation__variant_calling__variant_process: Aggregations occurrence__case__primary_site: Aggregations occurrence__case__project__dbgap_accession_number: Aggregations occurrence__case__project__disease_type: Aggregations occurrence__case__project__intended_release_date: Aggregations occurrence__case__project__name: Aggregations occurrence__case__project__primary_site: Aggregations occurrence__case__project__program__dbgap_accession_number: Aggregations occurrence__case__project__program__name: Aggregations occurrence__case__project__program__program_id: Aggregations occurrence__case__project__project_id: Aggregations occurrence__case__project__releasable: Aggregations occurrence__case__project__released: Aggregations occurrence__case__project__state: Aggregations occurrence__case__samples__portions__analytes__aliquots__aliquot_id: Aggregations occurrence__case__samples__portions__analytes__aliquots__submitter_id: Aggregations occurrence__case__samples__portions__analytes__analyte_id: Aggregations occurrence__case__samples__portions__analytes__analyte_type: Aggregations occurrence__case__samples__portions__analytes__submitter_id: Aggregations occurrence__case__samples__portions__portion_id: Aggregations occurrence__case__samples__portions__slides__section_location: Aggregations occurrence__case__samples__portions__slides__slide_id: Aggregations occurrence__case__samples__portions__slides__submitter_id: Aggregations occurrence__case__samples__portions__submitter_id: Aggregations occurrence__case__samples__preservation_method: Aggregations occurrence__case__samples__sample_id: Aggregations occurrence__case__samples__sample_type: Aggregations occurrence__case__samples__specimen_type: Aggregations occurrence__case__samples__submitter_id: Aggregations occurrence__case__samples__tissue_type: Aggregations occurrence__case__samples__tumor_descriptor: Aggregations occurrence__case__state: Aggregations occurrence__case__submitter_id: Aggregations occurrence__case__tissue_source_site__bcr_id: Aggregations occurrence__case__tissue_source_site__code: Aggregations occurrence__case__tissue_source_site__name: Aggregations occurrence__case__tissue_source_site__project: Aggregations occurrence__case__tissue_source_site__tissue_source_site_id: Aggregations occurrence__occurrence_id: Aggregations reference_allele: Aggregations ssm_autocomplete: Aggregations ssm_id: Aggregations start_position: NumericAggregations tumor_allele: Aggregations } type SsmConnection { pageInfo: PageInfo! edges: [SsmEdge]! total: Int! } type SsmEdge { node: Ssm cursor: String! } type SsmGene { external_db_ids: SsmGeneExternalDbIds biotype: String canonical_transcript_id: String cytoband: String gene_chromosome: String gene_end: Float gene_id: String gene_start: Float gene_strand: Float is_cancer_gene_census: Boolean symbol: String synonyms: String id: String } type SsmGeneExternalDbIds { entrez_ssm: [String] hgnc: [String] omim_ssm: [String] uniprotkb_swissprot: [String] entrez_gene: String omim_gene: String id: String } type SsmOccurrenceCase { available_variation_data: [String] demographic: EDemographic diagnoses: EDiagnoses exposures: EExposures family_histories: EFamilyHistories observations: SSMObservations project: Project tissue_source_site: ETissueSourceSite case_id: String consent_type: String days_to_consent: Float disease_type: String index_date: String lost_to_followup: String primary_site: String state: String submitter_id: String id: String } type Ssms { facets(filters: FiltersArgument, facets: [String]!): JSONString aggregations(filters: FiltersArgument, cohort_id: String, case_filters: FiltersArgument, aggregations_filter_themselves: Boolean = true): SsmAggregations hits(score: String, query: String, offset: Int, sort: [Sort], filters: FiltersArgument, cohort_id: String, case_filters: FiltersArgument, before: String, after: String, first: Int, last: Int): SsmConnection } type Stats { max: Float min: Float count: Int avg: Float sum: Float std_deviation: Float sum_of_squares: Float variance: Float std_deviation_bounds: StdDeviationBounds } type StdDeviationBounds { upper: Float lower: Float } type Summary { data_categories: [DataCategories] experimental_strategies: [ExperimentalStrategies] case_count: Float file_count: Float file_size: Float id: String } type SummaryAggregations { buckets: [CartSummaryBucket] } type TissueSourceSite { bcr_id: String code: String name: String project: String tissue_source_site_id: String id: String } type TopCasesCountByGenes { data(first: Int, gene_ids: [String], filters: FiltersArgument): JSONString } type Transcript implements Node { id: ID! domains: [Domains] exons: [Exon] biotype: String cdna_coding_end: Float cdna_coding_start: Float coding_region_end: Float coding_region_start: Float end: Float end_exon: Float is_canonical: Boolean length: Float length_amino_acid: Float length_cds: Float name: String number_of_exons: Float seq_exon_end: Float seq_exon_start: Float start: Float start_exon: Float transcript_id: String translation_id: String score: Int } type TranscriptAnnotation { amino_acids: String ccds: String cdna_position: String cds_end: Float cds_length: Float cds_position: String cds_start: Float clin_sig: String codons: String dbsnp_rs: String dbsnp_val_status: String domains: String ensp: String existing_variation: String hgvsc: String hgvsp: String hgvsp_short: String polyphen_impact: String polyphen_score: Float protein_position: String pubmed: String sift_impact: String sift_score: Float swissprot: String transcript_id: String trembl: String uniparc: String vep_impact: String id: String } type TranscriptConnection { pageInfo: PageInfo! edges: [TranscriptEdge]! total: Int! } type TranscriptEdge { node: Transcript cursor: String! } type Transcripts { hits(offset: Int, sort: [Sort], filters: FiltersArgument, cohort_id: String, case_filters: FiltersArgument, before: String, after: String, first: Int, last: Int): TranscriptConnection } type Treatment implements Node { id: ID! chemo_concurrent_to_radiation: String clinical_trial_indicator: String course_number: Float created_datetime: String days_to_treatment_end: Float days_to_treatment_start: Float drug_category: String embolic_agent: String initial_disease_status: String lesions_treated_number: Float margin_distance: Float margin_status: String margins_involved_site: String number_of_cycles: Float number_of_fractions: Float prescribed_dose: Float prescribed_dose_units: String pretreatment: String protocol_identifier: String radiosensitizing_agent: String reason_treatment_ended: String reason_treatment_not_given: String regimen_or_line_of_therapy: String residual_disease: String route_of_administration: String state: String submitter_id: String therapeutic_agents: String therapeutic_levels_achieved: String therapeutic_target_level: String timepoint_category: String treatment_anatomic_sites: String treatment_dose: Float treatment_dose_max: Float treatment_dose_units: String treatment_duration: Float treatment_effect: String treatment_effect_indicator: String treatment_frequency: String treatment_id: String treatment_intent_type: String treatment_or_therapy: String treatment_outcome: String treatment_outcome_duration: Float treatment_type: String treatment_type_administered: String updated_datetime: String score: Int } type TreatmentConnection { pageInfo: PageInfo! edges: [TreatmentEdge]! total: Int! } type TreatmentEdge { node: Treatment cursor: String! } type Treatments { hits(offset: Int, sort: [Sort], filters: FiltersArgument, cohort_id: String, case_filters: FiltersArgument, before: String, after: String, first: Int, last: Int): TreatmentConnection } type TumorGenotype { tumor_seq_allele1: String tumor_seq_allele2: String id: String } type User { username: String } type Validation { tumor_validation_allele1: String tumor_validation_allele2: String validation_method: String id: String }