generated: '2026-08-04'
method: generated
source: https://documentation.dnanexus.com/developer/api/api-directory
note: >-
  DNAnexus publishes no OpenAPI, so every step in these skills is grounded in a
  route that appears verbatim in the provider's own Directory of API Methods (206
  documented methods) rather than in a spec operationId. No route below was invented;
  each was checked against the harvested directory.
api: https://api.dnanexus.com
skills:
- file: dnanexus-authenticate-and-orient.md
  name: Authenticate against the DNAnexus Platform API and orient in a project
  api: https://api.dnanexus.com
  operations: [/system/whoami, /system/findProjects, /project-xxxx/describe, /class-xxxx/listFolder,
    /system/resolveDataObjects]
- file: dnanexus-upload-a-file.md
  name: Upload a file into a DNAnexus project safely
  api: https://api.dnanexus.com
  operations: [/file/new, /file-xxxx/upload, /file-xxxx/close, /file-xxxx/describe,
    /class-xxxx/setProperties, /class-xxxx/addTags]
- file: dnanexus-run-an-app-and-monitor.md
  name: Run a DNAnexus app and monitor the resulting job
  api: https://api.dnanexus.com
  operations:
  - /system/findApps
  - '/app-xxxx[/yyyy]/describe'
  - '/app-xxxx[/yyyy]/run'
  - /job-xxxx/describe
  - /job-xxxx/terminate
  - /system/findExecutions
- file: dnanexus-search-with-pagination.md
  name: Search the DNAnexus platform and paginate the whole result set
  api: https://api.dnanexus.com
  operations: [/system/findDataObjects, /system/findExecutions, /system/findProjects,
    /system/describeDataObjects, /system/resolveDataObjects, /org-xxxx/findProjects]
- file: dnanexus-tre-data-access-request.md
  name: Submit and review a Trusted Research Environment data access request
  api: https://api.dnanexus.com
  operations: [/system/findTres, /tre-xxxx/describe, /tre-xxxx/getDataTypeGroups, /treApplication/new,
    /treApplication-xxxx/createCohortMetadata, /treApplication-xxxx/addCollaborators,
    /treApplication-xxxx/submit, /treApplication-xxxx/describe, /treApplication-xxxx/approve,
    /treApplication-xxxx/reject, /system/findTreApplications]