generated: '2026-08-04'
method: derived
status: candidate
source: openapi/element-biosciences-cloud-api-openapi-original.yml
published: false
search_notes: 'NO official Element Biosciences MCP server exists as of this pass. Searched the

  developer docs, the Elembio GitHub organization (16 repos), npm, and MCP registries.

  mcp.elembio.io answers HTTP 200 to a tools/list POST, but the body is the ElemBio

  Cloud Next.js single-page app served by a *.elembio.io wildcard DNS record — an

  arbitrary subdomain returns the byte-identical page with the same deployment id.

  It is a catch-all false positive, NOT an MCP server. Recorded here so a later pass

  does not re-chase it.

  '
probes:
- url: https://mcp.elembio.io
  method: POST tools/list
  status: 200
  verdict: false-positive
  reason: wildcard SPA HTML body
  not JSON-RPC: null
- url: https://cloud-api.usw2.elembio.io/mcp
  method: POST tools/list
  status: 404
- url: https://cloud.elembio.io/mcp
  method: POST tools/list
  status: 404
- url: https://docs.elembio.io/mcp
  method: POST tools/list
  status: 403
server:
  name: element-biosciences
  transport: http
  url: null
  auth:
    type: api-key
    header: x-api-key
    note: A future server would pass the caller's ElemBio Cloud API key through; scopes are enforced server-side
      by the Cloud API.
candidate_note: 'The tools below are a DERIVED candidate design, one tool per real OpenAPI operation.

  Each tool inherits its input contract verbatim from the backing operation''s

  parameters in openapi/element-biosciences-cloud-api-openapi-original.yml. Nothing

  here is served by Element Biosciences today. Because every operation is a GET, a

  server built to this shape would be entirely read-only and safe to expose to an

  agent without write-side human-in-the-loop controls.

  '
tools:
- name: get_auth
  description: Verify the API key and report its tenant and scopes
  source_operation: openapi/element-biosciences-cloud-api-openapi-original.yml#AuthService_GetAuth
  scope: none
- name: list_runs
  description: List and filter sequencing and multiomics runs
  source_operation: openapi/element-biosciences-cloud-api-openapi-original.yml#RunService_ListRuns
  scope: runs:read
- name: get_run
  description: Get one run by id
  source_operation: openapi/element-biosciences-cloud-api-openapi-original.yml#RunService_GetRun
  scope: runs:read
- name: list_run_files
  description: List the files produced by a run
  source_operation: openapi/element-biosciences-cloud-api-openapi-original.yml#RunService_ListRunFiles
  scope: runs:download
- name: get_run_download_credentials
  description: Vend short-lived scoped S3 credentials for a run's files
  source_operation: openapi/element-biosciences-cloud-api-openapi-original.yml#RunService_GetRunDownloadCredentials
  scope: runs:download
- name: list_executions
  description: List and filter workflow executions
  source_operation: openapi/element-biosciences-cloud-api-openapi-original.yml#ExecutionService_ListExecutions
  scope: executions:read
- name: get_execution
  description: Get one workflow execution by id
  source_operation: openapi/element-biosciences-cloud-api-openapi-original.yml#ExecutionService_GetExecution
  scope: executions:read
- name: list_execution_files
  description: List the output files of a workflow execution
  source_operation: openapi/element-biosciences-cloud-api-openapi-original.yml#ExecutionService_ListExecutionFiles
  scope: executions:download
- name: get_execution_download_credentials
  description: Vend short-lived scoped S3 credentials for an execution's outputs
  source_operation: openapi/element-biosciences-cloud-api-openapi-original.yml#ExecutionService_GetExecutionDownloadCredentials
  scope: executions:download
- name: get_execution_logs
  description: Retrieve the logs of a workflow execution
  source_operation: openapi/element-biosciences-cloud-api-openapi-original.yml#ExecutionService_GetExecutionLogs
  scope: executions:logs
- name: list_instruments
  description: List the instruments registered to the tenant
  source_operation: openapi/element-biosciences-cloud-api-openapi-original.yml#InstrumentService_ListInstruments
  scope: instruments:read
- name: get_instrument
  description: Get one instrument by serial number
  source_operation: openapi/element-biosciences-cloud-api-openapi-original.yml#InstrumentService_GetInstrument
  scope: instruments:read
- name: list_storage_connections
  description: List the tenant's cloud storage connections
  source_operation: openapi/element-biosciences-cloud-api-openapi-original.yml#StorageConnectionService_ListStorageConnections
  scope: storage:read
- name: get_storage_connection
  description: Get one storage connection by id
  source_operation: openapi/element-biosciences-cloud-api-openapi-original.yml#StorageConnectionService_GetStorageConnection
  scope: storage:read
- name: list_storage_files
  description: List files within a storage connection
  with prefix filtering: null
  source_operation: openapi/element-biosciences-cloud-api-openapi-original.yml#StorageConnectionService_ListFiles
  scope: storage:download
- name: get_storage_download_credentials
  description: Vend short-lived scoped S3 credentials for a storage connection
  source_operation: openapi/element-biosciences-cloud-api-openapi-original.yml#StorageConnectionService_GetDownloadCredentials
  scope: storage:download
coverage:
  rest_operations: 16
  tools_proposed: 16
  unmapped_operations: 0
deployment:
  mode: none
  verified: derived
  tools: 16
  checked: '2026-08-12'
  source: catalog MCP census