aid: gencove
name: Gencove
description: >-
  Gencove is an enterprise analytics platform for low-pass whole genome sequencing
  (lpWGS). Its REST API lets customers upload FASTQ and array data, run samples
  through configurable analysis pipelines, track sample status, download deliverables
  (including merged VCFs, imputation and ancestry outputs), manage projects, batches,
  BaseSpace and S3 imports, and operate the Gencove Explorer compute environment.
  The platform is used across human health, agriculture and research to turn raw
  sequencing reads into genotypes, polygenic scores and ancestry at industrial scale.
  Access is via a web dashboard, the official `gencove` Python CLI/SDK, and a
  versioned HTTP API authenticated with an API key or JWT, with signed webhooks for
  analysis-completion events.
url: https://raw.githubusercontent.com/api-evangelist/gencove/refs/heads/main/apis.yml
accessModel:
  pricing: unknown
  onboarding: self-serve
  trial: false
  try_now: false
  public: false
  label: Self-serve signup
  confidence: medium
  source:
  - authentication
  generated: '2026-07-22'
  method: derived
image: https://www.google.com/s2/favicons?domain=gencove.com&sz=128
x-type: company
x-source: vc-portfolio
x-backed-by:
- version-one-ventures
x-tier: stub
x-tier-reason: portfolio-lead
specificationVersion: '0.20'
created: '2026-07-17'
modified: '2026-07-19'
tags:
- Company
- Health
- Genomics
- Sequencing
- Bioinformatics
- DNA
- Life Sciences
- Analytics
apis:
- aid: gencove:gencove-array-api
  name: Gencove array API
  description: The array API from Gencove — 1 operation(s) for array.
  humanURL: https://docs.gencove.com/base/getting-started/
  baseURL: https://api.gencove.com/api/v2/
  tags:
  - array
  properties:
  - type: OpenAPI
    url: openapi/gencove-array-api-openapi.yml
- aid: gencove:gencove-basespace-api
  name: Gencove basespace API
  description: The basespace API from Gencove — 6 operation(s) for basespace.
  humanURL: https://docs.gencove.com/base/getting-started/
  baseURL: https://api.gencove.com/api/v2/
  tags:
  - basespace
  properties:
  - type: OpenAPI
    url: openapi/gencove-basespace-api-openapi.yml
- aid: gencove:gencove-batch-api
  name: Gencove batch API
  description: The batch API from Gencove — 1 operation(s) for batch.
  humanURL: https://docs.gencove.com/base/getting-started/
  baseURL: https://api.gencove.com/api/v2/
  tags:
  - batch
  properties:
  - type: OpenAPI
    url: openapi/gencove-batch-api-openapi.yml
- aid: gencove:gencove-billing-api
  name: Gencove billing API
  description: The billing API from Gencove — 1 operation(s) for billing.
  humanURL: https://docs.gencove.com/base/getting-started/
  baseURL: https://api.gencove.com/api/v2/
  tags:
  - billing
  properties:
  - type: OpenAPI
    url: openapi/gencove-billing-api-openapi.yml
- aid: gencove:gencove-explorer-api
  name: Gencove explorer API
  description: The explorer API from Gencove — 10 operation(s) for explorer.
  humanURL: https://docs.gencove.com/base/getting-started/
  baseURL: https://api.gencove.com/api/v2/
  tags:
  - explorer
  properties:
  - type: OpenAPI
    url: openapi/gencove-explorer-api-openapi.yml
- aid: gencove:gencove-file-api
  name: Gencove file API
  description: The file API from Gencove — 2 operation(s) for file.
  humanURL: https://docs.gencove.com/base/getting-started/
  baseURL: https://api.gencove.com/api/v2/
  tags:
  - file
  properties:
  - type: OpenAPI
    url: openapi/gencove-file-api-openapi.yml
- aid: gencove:gencove-firstmile-api
  name: Gencove firstmile API
  description: The firstmile API from Gencove — 2 operation(s) for firstmile.
  humanURL: https://docs.gencove.com/base/getting-started/
  baseURL: https://api.gencove.com/api/v2/
  tags:
  - firstmile
  properties:
  - type: OpenAPI
    url: openapi/gencove-firstmile-api-openapi.yml
- aid: gencove:gencove-invitation-api
  name: Gencove invitation API
  description: The invitation API from Gencove — 3 operation(s) for invitation.
  humanURL: https://docs.gencove.com/base/getting-started/
  baseURL: https://api.gencove.com/api/v2/
  tags:
  - invitation
  properties:
  - type: OpenAPI
    url: openapi/gencove-invitation-api-openapi.yml
- aid: gencove:gencove-jwt-api
  name: Gencove jwt API
  description: The jwt API from Gencove — 4 operation(s) for jwt.
  humanURL: https://docs.gencove.com/base/getting-started/
  baseURL: https://api.gencove.com/api/v2/
  tags:
  - jwt
  properties:
  - type: OpenAPI
    url: openapi/gencove-jwt-api-openapi.yml
- aid: gencove:gencove-mfa-api
  name: Gencove mfa API
  description: The mfa API from Gencove — 4 operation(s) for mfa.
  humanURL: https://docs.gencove.com/base/getting-started/
  baseURL: https://api.gencove.com/api/v2/
  tags:
  - mfa
  properties:
  - type: OpenAPI
    url: openapi/gencove-mfa-api-openapi.yml
- aid: gencove:gencove-notification-api
  name: Gencove notification API
  description: The notification API from Gencove — 1 operation(s) for notification.
  humanURL: https://docs.gencove.com/base/getting-started/
  baseURL: https://api.gencove.com/api/v2/
  tags:
  - notification
  properties:
  - type: OpenAPI
    url: openapi/gencove-notification-api-openapi.yml
- aid: gencove:gencove-organization-api
  name: Gencove organization API
  description: The organization API from Gencove — 5 operation(s) for organization.
  humanURL: https://docs.gencove.com/base/getting-started/
  baseURL: https://api.gencove.com/api/v2/
  tags:
  - organization
  properties:
  - type: OpenAPI
    url: openapi/gencove-organization-api-openapi.yml
- aid: gencove:gencove-pipeline-api
  name: Gencove pipeline API
  description: The pipeline API from Gencove — 5 operation(s) for pipeline.
  humanURL: https://docs.gencove.com/base/getting-started/
  baseURL: https://api.gencove.com/api/v2/
  tags:
  - pipeline
  properties:
  - type: OpenAPI
    url: openapi/gencove-pipeline-api-openapi.yml
- aid: gencove:gencove-project-api
  name: Gencove project API
  description: The project API from Gencove — 34 operation(s) for project.
  humanURL: https://docs.gencove.com/base/getting-started/
  baseURL: https://api.gencove.com/api/v2/
  tags:
  - project
  properties:
  - type: OpenAPI
    url: openapi/gencove-project-api-openapi.yml
- aid: gencove:gencove-role-api
  name: Gencove role API
  description: The role API from Gencove — 1 operation(s) for role.
  humanURL: https://docs.gencove.com/base/getting-started/
  baseURL: https://api.gencove.com/api/v2/
  tags:
  - role
  properties:
  - type: OpenAPI
    url: openapi/gencove-role-api-openapi.yml
- aid: gencove:gencove-s3-api
  name: Gencove s3 API
  description: The s3 API from Gencove — 5 operation(s) for s3.
  humanURL: https://docs.gencove.com/base/getting-started/
  baseURL: https://api.gencove.com/api/v2/
  tags:
  - s3
  properties:
  - type: OpenAPI
    url: openapi/gencove-s3-api-openapi.yml
- aid: gencove:gencove-sample-api
  name: Gencove sample API
  description: The sample API from Gencove — 17 operation(s) for sample.
  humanURL: https://docs.gencove.com/base/getting-started/
  baseURL: https://api.gencove.com/api/v2/
  tags:
  - sample
  properties:
  - type: OpenAPI
    url: openapi/gencove-sample-api-openapi.yml
- aid: gencove:gencove-social-api
  name: Gencove social API
  description: The social API from Gencove — 3 operation(s) for social.
  humanURL: https://docs.gencove.com/base/getting-started/
  baseURL: https://api.gencove.com/api/v2/
  tags:
  - social
  properties:
  - type: OpenAPI
    url: openapi/gencove-social-api-openapi.yml
- aid: gencove:gencove-upload-api
  name: Gencove upload API
  description: The upload API from Gencove — 7 operation(s) for upload.
  humanURL: https://docs.gencove.com/base/getting-started/
  baseURL: https://api.gencove.com/api/v2/
  tags:
  - upload
  properties:
  - type: OpenAPI
    url: openapi/gencove-upload-api-openapi.yml
- aid: gencove:gencove-user-api
  name: Gencove user API
  description: The user API from Gencove — 12 operation(s) for user.
  humanURL: https://docs.gencove.com/base/getting-started/
  baseURL: https://api.gencove.com/api/v2/
  tags:
  - user
  properties:
  - type: OpenAPI
    url: openapi/gencove-user-api-openapi.yml
maintainers:
- FN: Kin Lane
  email: kin@apievangelist.com
- FN: APIs.json
  email: info@apis.io
common:
- type: Website
  url: https://gencove.com
- type: DeveloperPortal
  url: https://docs.gencove.com
- type: Documentation
  url: https://docs.gencove.com/base/getting-started/
- type: APIReference
  url: https://docs.gencove.com/base/getting-started/
- type: GettingStarted
  url: https://docs.gencove.com/base/getting-started/
- type: Support
  url: https://docs.gencove.com/general/support/
- type: Blog
  url: https://gencove.com/blog
- type: GitHubOrganization
  url: https://github.com/gncv
- type: StatusPage
  url: https://gencove.statuspage.io
- type: SignUp
  url: https://consumer.gencove.com/user/register/
- type: Login
  url: https://consumer.gencove.com/user/login/
- type: TermsOfService
  url: https://consumer.gencove.com/terms-and-conditions/
- type: PrivacyPolicy
  url: https://consumer.gencove.com/privacy-policy/
- type: OpenAPI
  url: openapi/gencove-openapi-original.json
- type: Overlay
  url: overlays/gencove-openapi-overlay.yaml
- type: Authentication
  url: authentication/gencove-authentication.yml
- type: AgenticAccess
  url: agentic-access/gencove-agentic-access.yml
- type: DomainSecurity
  url: security/gencove-domain-security.yml
- type: Packages
  url: packages/gencove-packages.yml
- type: SDKs
  url: packages/gencove-packages.yml
- type: CLI
  url: cli/gencove-cli.yml
- type: Conventions
  url: conventions/gencove-conventions.yml
- type: ErrorCatalog
  url: errors/gencove-error-codes.yml
- type: DataModel
  url: data-model/gencove-data-model.yml
- type: Lifecycle
  url: lifecycle/gencove-lifecycle.yml
- type: Deprecation
  url: lifecycle/gencove-lifecycle.yml
- type: Conformance
  url: conformance/gencove-conformance.yml
- type: ChangeLog
  url: changelog/gencove-changelog.yml
- type: MCPServer
  url: mcp/gencove-mcp.yml
- type: LLMsTxt
  url: llms/gencove-llms.txt
- type: WellKnown
  url: well-known/gencove-well-known.yml
- type: Webhooks
  url: asyncapi/gencove-webhooks.yml
- type: AgentSkill
  url: skills/_index.yml
x-enrichment:
  date: '2026-07-19'
  status: backfilled
  pass: local-v1
  note: backfilled from .gitignore signal + verified work evidence