generated: '2026-07-19'
method: derived
status: candidate
source: openapi/gencove-openapi-original.json
note: No official hosted Gencove MCP server was found. This is a candidate tool list derived from key
  OpenAPI operations, offered as a starting point for exposing the Gencove API to agents.
server:
  name: gencove
  transport: http
tools:
- name: list_projects
  description: List projects in the organization.
  source_operation: openapi/gencove-openapi-original.json#projects_list
- name: create_project
  description: Create a project bound to a pipeline capability.
  source_operation: openapi/gencove-openapi-original.json#projects_create
- name: get_project
  description: Retrieve a single project.
  source_operation: openapi/gencove-openapi-original.json#projects_retrieve
- name: list_project_samples
  description: List samples in a project.
  source_operation: openapi/gencove-openapi-original.json#project_samples_list
- name: get_sample
  description: Retrieve sample details and deliverable files.
  source_operation: openapi/gencove-openapi-original.json#samples_retrieve
- name: list_pipelines
  description: List available analysis pipelines.
  source_operation: openapi/gencove-openapi-original.json#pipeline_list
- name: list_pipeline_capabilities
  description: List pipeline capabilities (used when creating projects).
  source_operation: openapi/gencove-openapi-original.json#pipeline_capabilities_list
- name: create_upload_url
  description: Get a presigned upload form for FASTQ/array data.
  source_operation: openapi/gencove-openapi-original.json#array_data_upload_form_create
- name: get_merged_vcf
  description: Retrieve the merged VCF deliverable for a project.
  source_operation: openapi/gencove-openapi-original.json#project_merge_vcfs_retrieve
- name: create_batch
  description: Create a batch within a project.
  source_operation: openapi/gencove-openapi-original.json#project_batches_create
deployment:
  mode: none
  verified: derived
  tools: 10
  checked: '2026-08-12'
  source: catalog MCP census