generated: '2026-07-19'
method: derived
status: candidate
source: https://github.com/ginkgobioworks/ginkgo-ai-client
note: >-
  No official hosted/remote MCP server was found for Ginkgo (no listing in the
  MCP registry, no @modelcontextprotocol package, none referenced in the docs).
  This is a CANDIDATE tool surface derived from the two documented API endpoints
  and the client's query types, provided as a starting point for an MCP wrapper.
server:
  name: ginkgo-ai
  transport: http
tools:
- name: run_transform
  description: >-
    Run a single inference transform (masked language modeling or mean
    embedding) on a protein or DNA sequence against a Ginkgo AI model.
  source_operation: POST https://api.ginkgobioworks.ai/v1/transforms/run
  inputs:
    model: string
    text: string
    transforms: array
- name: run_batch_transform
  description: >-
    Submit a batch of inference transforms in a single request; results return
    in submitted order.
  source_operation: POST https://api.ginkgobioworks.ai/v1/batches/transforms/run
- name: get_job_result
  description: >-
    Poll a job result URL returned by a submit call until status is COMPLETE and
    return the parsed result.
  source_operation: GET <job result URL>