generated: '2026-07-20'
method: searched
status: published
source: https://github.com/nanome-ai/claude-code-nanome-plugin (nanome-plugin/skills/nanome-workspace/SKILL.md,
  "MCP Mode")
note: Nanome's official Claude Code plugin documents a Nanome MCP server exposing nanome_* tools ("Claude
  Chat with Nanome MCP server"). The tool surface below is captured verbatim from the provider skill's
  MCP Mode. No public hosted MCP endpoint URL or transport is published in the skill, so the connection
  URL is left unset. Tools map to the live Workspaces API (workspaces.nanome.ai).
server:
  name: nanome
  transport: unknown
tools:
- name: nanome_create_workspace
  description: Create a new Nanome workspace ({ name, description }); returns { id, name }.
  source_operation: workspaces.nanome.ai POST /workspaces
- name: nanome_load_structure
  description: Load a molecular structure into a workspace from a source database ({ workspace_id, source,
    id }); returns { serial, name }.
  source_operation: workspaces.nanome.ai POST /workspaces/{id}/entries/load
- name: nanome_create_scene
  description: Create a new scene in a workspace ({ workspace_id }); returns { serial, name }.
  source_operation: workspaces.nanome.ai POST /workspaces/{id}/scenes
- name: nanome_rename_scene
  description: Rename a scene ({ workspace_id, scene_serial, name }).
  source_operation: workspaces.nanome.ai POST /workspaces/{id}/scenes/{serial}/rename
- name: nanome_add_component
  description: Add a visualization component to a scene ({ workspace_id, scene_serial, component }); one
    component per call.
  source_operation: workspaces.nanome.ai POST /workspaces/{id}/scenes/{serial}/components/add
deployment:
  mode: unclear
  verified: searched
  tools: 5
  checked: '2026-08-12'
  source: catalog MCP census