generated: '2026-07-20'
method: derived
source: openapi/one-codex-openapi-original.json
notes: Entity-relationship graph derived from OpenAPI component schemas and id-reference field names.
  One Codex organizes microbial genomics data around Samples, Analyses (Classifications/Panels/Alignments/MLSTs/Functional
  Profiles/Reports/Controls), Jobs, Projects, Metadata, Tags, and Documents.
entities:
- name: account
  fields: 4
- name: alignments
  fields: 9
- name: analyses
  fields: 10
- name: classifications
  fields: 10
- name: controls
  fields: 9
- name: documents
  fields: 6
- name: events
  fields: 3
- name: functional_profiles
  fields: 9
- name: jobs
  fields: 6
- name: metadata
  fields: 16
- name: mlsts
  fields: 9
- name: panels
  fields: 9
- name: projects
  fields: 8
- name: reports
  fields: 9
- name: samples
  fields: 13
- name: sequencing_batches
  fields: 6
- name: tags
  fields: 2
- name: users
  fields: 2
- name: webhooks
  fields: 6
- name: workflows
  fields: 9
relationships:
- from: account
  to: users
  via: user
  cardinality: belongs_to
- from: alignments
  to: jobs
  via: job
  cardinality: belongs_to
- from: alignments
  to: samples
  via: sample
  cardinality: belongs_to
- from: analyses
  to: jobs
  via: job
  cardinality: belongs_to
- from: analyses
  to: samples
  via: sample
  cardinality: belongs_to
- from: classifications
  to: jobs
  via: job
  cardinality: belongs_to
- from: classifications
  to: samples
  via: sample
  cardinality: belongs_to
- from: controls
  to: jobs
  via: job
  cardinality: belongs_to
- from: controls
  to: samples
  via: sample
  cardinality: belongs_to
- from: functional_profiles
  to: jobs
  via: job
  cardinality: belongs_to
- from: functional_profiles
  to: samples
  via: sample
  cardinality: belongs_to
- from: metadata
  to: samples
  via: sample
  cardinality: belongs_to
- from: mlsts
  to: jobs
  via: job
  cardinality: belongs_to
- from: mlsts
  to: samples
  via: sample
  cardinality: belongs_to
- from: panels
  to: jobs
  via: job
  cardinality: belongs_to
- from: panels
  to: samples
  via: sample
  cardinality: belongs_to
- from: reports
  to: jobs
  via: job
  cardinality: belongs_to
- from: reports
  to: samples
  via: sample
  cardinality: belongs_to
- from: samples
  to: metadata
  via: metadata
  cardinality: belongs_to
- from: samples
  to: projects
  via: project
  cardinality: belongs_to
- from: samples
  to: tags
  via: tags
  cardinality: has_many
- from: workflows
  to: jobs
  via: job
  cardinality: belongs_to
- from: workflows
  to: samples
  via: sample
  cardinality: belongs_to