generated: '2026-08-26'
method: searched
source: >-
  https://github.com/Pillar-Biosciences-Inc (GitHub REST API, 2026-08-26) plus
  registry lookups on npm, PyPI, RubyGems, crates.io, NuGet, Maven Central and
  pkg.go.dev.
name: Pillar Biosciences packages
description: >-
  Pillar Biosciences publishes NO API client SDK in any package registry. What it
  does publish is a small set of first-party open-source BIOINFORMATICS tools on
  GitHub — CNV callers, a methylation pipeline and batch-effect notebooks — none
  of which are distributed through a package registry and none of which is a
  client library for a Pillar API. They are recorded here because they are real,
  first-party, dated, licensed software artifacts; they are deliberately NOT
  wired as `type: SDKs`, because crediting an sdk_count for research pipelines
  that wrap no API would be false credit.
registries_searched:
  - registry: npm
    query: pillar biosciences / pivat / oncoreveal
    result: no first-party package
  - registry: pypi
    query: pivat / pillarbio / oncoreveal
    result: no first-party package (pypi.org/pypi/pivat/json -> 404)
  - registry: rubygems
    result: no first-party package
  - registry: crates.io
    result: no first-party package
  - registry: nuget
    result: no first-party package
  - registry: maven-central
    result: no first-party package
  - registry: pkg.go.dev
    result: no first-party package
packages:
  - name: StateCNV
    official: true
    first_party: true
    kind: bioinformatics-tool
    language: Python
    registry: github
    url: https://github.com/Pillar-Biosciences-Inc/StateCNV
    description: A state-space CNV caller with disease profiling.
    license: MIT
    version: null
    published: null
    last_commit: '2025-08-04'
    note: >-
      Source-available on GitHub only. No tags and no GitHub releases, so there
      is no published version to record — `version: null` here means "checked,
      the project ships no versioned release", not "not checked".
  - name: BayesCNV
    official: true
    first_party: true
    kind: bioinformatics-tool
    language: Python
    registry: github
    url: https://github.com/Pillar-Biosciences-Inc/BayesCNV
    description: A Bayesian copy number variant detection algorithm.
    license: GPL-3.0
    version: null
    published: null
    last_commit: '2025-12-08'
    note: No tags, no releases, no registry distribution.
  - name: BatchDetect
    official: true
    first_party: true
    kind: bioinformatics-tool
    language: Jupyter Notebook
    registry: github
    url: https://github.com/Pillar-Biosciences-Inc/BatchDetect
    description: Detecting batch heterogeneity via likelihoods.
    license: GPL-2.0
    version: null
    published: null
    last_commit: '2026-03-07'
    note: No tags, no releases, no registry distribution.
  - name: CustomPerformanceCNV
    official: true
    first_party: true
    kind: bioinformatics-tool
    language: Jupyter Notebook
    registry: github
    url: https://github.com/Pillar-Biosciences-Inc/CustomPerformanceCNV
    description: >-
      Custom CNV performance analysis notebooks. The repository carries no
      description of its own on GitHub.
    license: MIT
    version: null
    published: null
    last_commit: '2026-04-08'
    note: No tags, no releases, no registry distribution.
  - name: methylation
    official: true
    first_party: true
    kind: bioinformatics-pipeline
    language: Python
    registry: github
    url: https://github.com/Pillar-Biosciences-Inc/methylation
    description: An open-source, Bismark-based pipeline for processing methylation sequencing data.
    license: GPL-3.0
    version: null
    published: null
    last_commit: '2023-05-08'
    note: >-
      No tags, no releases, no registry distribution. Last commit 2023-05-08 —
      the oldest first-party project in the org.
forks:
  note: >-
    The GitHub org also carries four upstream forks (django, ddt, xdocreport,
    cromwell). They are third-party projects, not Pillar software, and are
    excluded from packages[] above.
  repositories:
    - https://github.com/Pillar-Biosciences-Inc/django
    - https://github.com/Pillar-Biosciences-Inc/ddt
    - https://github.com/Pillar-Biosciences-Inc/xdocreport
    - https://github.com/Pillar-Biosciences-Inc/cromwell
summary:
  package_count: 5
  sdk_count: 0
  registry_packages: 0
  official_count: 5