naftiko: 1.0.0-alpha2
info:
  label: MoDaC API — rest-api-common-controller
  description: 'MoDaC API — rest-api-common-controller. 20 operations. Lead operation: rest-api-common-controller. Self-contained
    Naftiko capability covering one Predictive Oncology Model And Data Clearinghouse business surface.'
  tags:
  - Predictive Oncology Model And Data Clearinghouse
  - rest-api-common-controller
  created: '2026-05-19'
  modified: '2026-05-19'
binds:
- namespace: env
  keys:
    PREDICTIVE_ONCOLOGY_MODEL_AND_DATA_CLEARINGHOUSE_API_KEY: PREDICTIVE_ONCOLOGY_MODEL_AND_DATA_CLEARINGHOUSE_API_KEY
capability:
  consumes:
  - type: http
    namespace: predictive-oncology-model-and-data-clearinghouse-rest-api-common-controller
    baseUri: http://localhost:8080
    description: MoDaC API — rest-api-common-controller business capability. Self-contained, no shared references.
    resources:
    - name: api-authenticate
      path: /api/authenticate
      operations:
      - name: authenticate
        method: GET
        description: ''
        outputRawFormat: json
        outputParameters:
        - name: result
          type: object
          value: $.
    - name: api-collection-**
      path: /api/collection/**
      operations:
      - name: getcollection
        method: GET
        description: ''
        outputRawFormat: json
        outputParameters:
        - name: result
          type: object
          value: $.
        inputParameters:
        - name: list
          in: query
          type: boolean
        - name: includeAcl
          in: query
          type: boolean
      - name: registercollection
        method: PUT
        description: ''
        outputRawFormat: json
        outputParameters:
        - name: result
          type: object
          value: $.
        inputParameters:
        - name: body
          in: body
          type: object
          description: Request body (JSON).
          required: true
    - name: api-collection-download-**
      path: /api/collection/download/**
      operations:
      - name: getcollectiondownloadstatus
        method: GET
        description: ''
        outputRawFormat: json
        outputParameters:
        - name: result
          type: object
          value: $.
    - name: api-collection-query
      path: /api/collection/query
      operations:
      - name: querycollections
        method: POST
        description: ''
        outputRawFormat: json
        outputParameters:
        - name: result
          type: object
          value: $.
        inputParameters:
        - name: body
          in: body
          type: object
          description: Request body (JSON).
          required: true
    - name: api-dataObject-**-generateDownloadRequestURL
      path: /api/dataObject/**/generateDownloadRequestURL
      operations:
      - name: generatedownloadrequesturl
        method: POST
        description: ''
        outputRawFormat: json
        outputParameters:
        - name: result
          type: object
          value: $.
    - name: api-dataObject-**-syncDownload
      path: /api/dataObject/**/syncDownload
      operations:
      - name: synchronousdownload
        method: POST
        description: ''
        outputRawFormat: json
        outputParameters:
        - name: result
          type: object
          value: $.
    - name: api-dataObject-download-**
      path: /api/dataObject/download/**
      operations:
      - name: getdataobjectdownloadstatus
        method: GET
        description: ''
        outputRawFormat: json
        outputParameters:
        - name: result
          type: object
          value: $.
    - name: api-dataObject-query
      path: /api/dataObject/query
      operations:
      - name: querydataobjects
        method: POST
        description: ''
        outputRawFormat: json
        outputParameters:
        - name: result
          type: object
          value: $.
        inputParameters:
        - name: returnParent
          in: query
          type: boolean
        - name: body
          in: body
          type: object
          description: Request body (JSON).
          required: true
    - name: api-download-**
      path: /api/download/**
      operations:
      - name: getdataobjectsorcollectionsdownloadstatus
        method: GET
        description: ''
        outputRawFormat: json
        outputParameters:
        - name: result
          type: object
          value: $.
    - name: api-model-evaluate-**
      path: /api/model/evaluate/**
      operations:
      - name: getstatusbytaskid
        method: GET
        description: ''
        outputRawFormat: json
        outputParameters:
        - name: result
          type: object
          value: $.
      - name: performmodelevaluationfordatasets
        method: POST
        description: ''
        outputRawFormat: json
        outputParameters:
        - name: result
          type: object
          value: $.
        inputParameters:
        - name: type
          in: query
          type: string
          required: true
        - name: body
          in: body
          type: object
          description: Request body (JSON).
          required: false
    - name: api-models-evaluate-**
      path: /api/models/evaluate/**
      operations:
      - name: performmodelevaluationforreferencedatasets
        method: POST
        description: ''
        outputRawFormat: json
        outputParameters:
        - name: result
          type: object
          value: $.
        inputParameters:
        - name: body
          in: body
          type: object
          description: Request body (JSON).
          required: true
    - name: api-v2-collection-**-download
      path: /api/v2/collection/**/download
      operations:
      - name: collectiondownload
        method: POST
        description: ''
        outputRawFormat: json
        outputParameters:
        - name: result
          type: object
          value: $.
        inputParameters:
        - name: body
          in: body
          type: object
          description: Request body (JSON).
          required: true
    - name: api-v2-dataObject-**
      path: /api/v2/dataObject/**
      operations:
      - name: getdataobject
        method: GET
        description: ''
        outputRawFormat: json
        outputParameters:
        - name: result
          type: object
          value: $.
        inputParameters:
        - name: includeAcl
          in: query
          type: boolean
        - name: excludeParentMetadata
          in: query
          type: boolean
      - name: registerdataobject
        method: PUT
        description: ''
        outputRawFormat: json
        outputParameters:
        - name: result
          type: object
          value: $.
        inputParameters:
        - name: body
          in: body
          type: object
          description: Request body (JSON).
          required: false
    - name: api-v2-dataObject-**-download
      path: /api/v2/dataObject/**/download
      operations:
      - name: syncandasynchronousdownload
        method: POST
        description: ''
        outputRawFormat: json
        outputParameters:
        - name: result
          type: object
          value: $.
        inputParameters:
        - name: body
          in: body
          type: object
          description: Request body (JSON).
          required: true
    - name: api-v2-download
      path: /api/v2/download
      operations:
      - name: downloaddataobjectsorcollections
        method: POST
        description: ''
        outputRawFormat: json
        outputParameters:
        - name: result
          type: object
          value: $.
        inputParameters:
        - name: body
          in: body
          type: object
          description: Request body (JSON).
          required: true
    - name: api-v2-registration
      path: /api/v2/registration
      operations:
      - name: bulkregistration
        method: PUT
        description: ''
        outputRawFormat: json
        outputParameters:
        - name: result
          type: object
          value: $.
        inputParameters:
        - name: body
          in: body
          type: object
          description: Request body (JSON).
          required: true
    - name: api-v2-registration-**
      path: /api/v2/registration/**
      operations:
      - name: getdataobjectsregistrationstatus
        method: GET
        description: ''
        outputRawFormat: json
        outputParameters:
        - name: result
          type: object
          value: $.
  exposes:
  - type: rest
    namespace: predictive-oncology-model-and-data-clearinghouse-rest-api-common-controller-rest
    port: 8080
    description: REST adapter for MoDaC API — rest-api-common-controller. One Spectral-compliant resource per consumed operation,
      prefixed with /v1.
    resources:
    - path: /v1/api/authenticate
      name: api-authenticate
      description: REST surface for api-authenticate.
      operations:
      - method: GET
        name: authenticate
        description: authenticate
        call: predictive-oncology-model-and-data-clearinghouse-rest-api-common-controller.authenticate
        outputParameters:
        - type: object
          mapping: $.
    - path: /v1/api/collection/
      name: api-collection
      description: REST surface for api-collection-**.
      operations:
      - method: GET
        name: getcollection
        description: getcollection
        call: predictive-oncology-model-and-data-clearinghouse-rest-api-common-controller.getcollection
        with:
          list: rest.list
          includeAcl: rest.includeAcl
        outputParameters:
        - type: object
          mapping: $.
      - method: PUT
        name: registercollection
        description: registercollection
        call: predictive-oncology-model-and-data-clearinghouse-rest-api-common-controller.registercollection
        with:
          body: rest.body
        outputParameters:
        - type: object
          mapping: $.
    - path: /v1/api/collection/download/
      name: api-collection-download
      description: REST surface for api-collection-download-**.
      operations:
      - method: GET
        name: getcollectiondownloadstatus
        description: getcollectiondownloadstatus
        call: predictive-oncology-model-and-data-clearinghouse-rest-api-common-controller.getcollectiondownloadstatus
        outputParameters:
        - type: object
          mapping: $.
    - path: /v1/api/collection/query
      name: api-collection-query
      description: REST surface for api-collection-query.
      operations:
      - method: POST
        name: querycollections
        description: querycollections
        call: predictive-oncology-model-and-data-clearinghouse-rest-api-common-controller.querycollections
        with:
          body: rest.body
        outputParameters:
        - type: object
          mapping: $.
    - path: /v1/api/dataobject//generatedownloadrequesturl
      name: api-dataobject-generatedownloadrequesturl
      description: REST surface for api-dataObject-**-generateDownloadRequestURL.
      operations:
      - method: POST
        name: generatedownloadrequesturl
        description: generatedownloadrequesturl
        call: predictive-oncology-model-and-data-clearinghouse-rest-api-common-controller.generatedownloadrequesturl
        outputParameters:
        - type: object
          mapping: $.
    - path: /v1/api/dataobject//syncdownload
      name: api-dataobject-syncdownload
      description: REST surface for api-dataObject-**-syncDownload.
      operations:
      - method: POST
        name: synchronousdownload
        description: synchronousdownload
        call: predictive-oncology-model-and-data-clearinghouse-rest-api-common-controller.synchronousdownload
        outputParameters:
        - type: object
          mapping: $.
    - path: /v1/api/dataobject/download/
      name: api-dataobject-download
      description: REST surface for api-dataObject-download-**.
      operations:
      - method: GET
        name: getdataobjectdownloadstatus
        description: getdataobjectdownloadstatus
        call: predictive-oncology-model-and-data-clearinghouse-rest-api-common-controller.getdataobjectdownloadstatus
        outputParameters:
        - type: object
          mapping: $.
    - path: /v1/api/dataobject/query
      name: api-dataobject-query
      description: REST surface for api-dataObject-query.
      operations:
      - method: POST
        name: querydataobjects
        description: querydataobjects
        call: predictive-oncology-model-and-data-clearinghouse-rest-api-common-controller.querydataobjects
        with:
          returnParent: rest.returnParent
          body: rest.body
        outputParameters:
        - type: object
          mapping: $.
    - path: /v1/api/download/
      name: api-download
      description: REST surface for api-download-**.
      operations:
      - method: GET
        name: getdataobjectsorcollectionsdownloadstatus
        description: getdataobjectsorcollectionsdownloadstatus
        call: predictive-oncology-model-and-data-clearinghouse-rest-api-common-controller.getdataobjectsorcollectionsdownloadstatus
        outputParameters:
        - type: object
          mapping: $.
    - path: /v1/api/model/evaluate/
      name: api-model-evaluate
      description: REST surface for api-model-evaluate-**.
      operations:
      - method: GET
        name: getstatusbytaskid
        description: getstatusbytaskid
        call: predictive-oncology-model-and-data-clearinghouse-rest-api-common-controller.getstatusbytaskid
        outputParameters:
        - type: object
          mapping: $.
      - method: POST
        name: performmodelevaluationfordatasets
        description: performmodelevaluationfordatasets
        call: predictive-oncology-model-and-data-clearinghouse-rest-api-common-controller.performmodelevaluationfordatasets
        with:
          type: rest.type
          body: rest.body
        outputParameters:
        - type: object
          mapping: $.
    - path: /v1/api/models/evaluate/
      name: api-models-evaluate
      description: REST surface for api-models-evaluate-**.
      operations:
      - method: POST
        name: performmodelevaluationforreferencedatasets
        description: performmodelevaluationforreferencedatasets
        call: predictive-oncology-model-and-data-clearinghouse-rest-api-common-controller.performmodelevaluationforreferencedatasets
        with:
          body: rest.body
        outputParameters:
        - type: object
          mapping: $.
    - path: /v1/api/v2/collection//download
      name: api-v2-collection-download
      description: REST surface for api-v2-collection-**-download.
      operations:
      - method: POST
        name: collectiondownload
        description: collectiondownload
        call: predictive-oncology-model-and-data-clearinghouse-rest-api-common-controller.collectiondownload
        with:
          body: rest.body
        outputParameters:
        - type: object
          mapping: $.
    - path: /v1/api/v2/dataobject/
      name: api-v2-dataobject
      description: REST surface for api-v2-dataObject-**.
      operations:
      - method: GET
        name: getdataobject
        description: getdataobject
        call: predictive-oncology-model-and-data-clearinghouse-rest-api-common-controller.getdataobject
        with:
          includeAcl: rest.includeAcl
          excludeParentMetadata: rest.excludeParentMetadata
        outputParameters:
        - type: object
          mapping: $.
      - method: PUT
        name: registerdataobject
        description: registerdataobject
        call: predictive-oncology-model-and-data-clearinghouse-rest-api-common-controller.registerdataobject
        with:
          body: rest.body
        outputParameters:
        - type: object
          mapping: $.
    - path: /v1/api/v2/dataobject//download
      name: api-v2-dataobject-download
      description: REST surface for api-v2-dataObject-**-download.
      operations:
      - method: POST
        name: syncandasynchronousdownload
        description: syncandasynchronousdownload
        call: predictive-oncology-model-and-data-clearinghouse-rest-api-common-controller.syncandasynchronousdownload
        with:
          body: rest.body
        outputParameters:
        - type: object
          mapping: $.
    - path: /v1/api/v2/download
      name: api-v2-download
      description: REST surface for api-v2-download.
      operations:
      - method: POST
        name: downloaddataobjectsorcollections
        description: downloaddataobjectsorcollections
        call: predictive-oncology-model-and-data-clearinghouse-rest-api-common-controller.downloaddataobjectsorcollections
        with:
          body: rest.body
        outputParameters:
        - type: object
          mapping: $.
    - path: /v1/api/v2/registration
      name: api-v2-registration
      description: REST surface for api-v2-registration.
      operations:
      - method: PUT
        name: bulkregistration
        description: bulkregistration
        call: predictive-oncology-model-and-data-clearinghouse-rest-api-common-controller.bulkregistration
        with:
          body: rest.body
        outputParameters:
        - type: object
          mapping: $.
    - path: /v1/api/v2/registration/
      name: api-v2-registration
      description: REST surface for api-v2-registration-**.
      operations:
      - method: GET
        name: getdataobjectsregistrationstatus
        description: getdataobjectsregistrationstatus
        call: predictive-oncology-model-and-data-clearinghouse-rest-api-common-controller.getdataobjectsregistrationstatus
        outputParameters:
        - type: object
          mapping: $.
  - type: mcp
    namespace: predictive-oncology-model-and-data-clearinghouse-rest-api-common-controller-mcp
    port: 9090
    transport: http
    description: MCP adapter for MoDaC API — rest-api-common-controller. One tool per consumed operation, routed inline through
      this capability's consumes block.
    tools:
    - name: authenticate
      description: authenticate
      hints:
        readOnly: true
        destructive: false
        idempotent: true
      call: predictive-oncology-model-and-data-clearinghouse-rest-api-common-controller.authenticate
      outputParameters:
      - type: object
        mapping: $.
    - name: getcollection
      description: getcollection
      hints:
        readOnly: true
        destructive: false
        idempotent: true
      call: predictive-oncology-model-and-data-clearinghouse-rest-api-common-controller.getcollection
      with:
        list: tools.list
        includeAcl: tools.includeAcl
      outputParameters:
      - type: object
        mapping: $.
    - name: registercollection
      description: registercollection
      hints:
        readOnly: false
        destructive: false
        idempotent: true
      call: predictive-oncology-model-and-data-clearinghouse-rest-api-common-controller.registercollection
      with:
        body: tools.body
      outputParameters:
      - type: object
        mapping: $.
    - name: getcollectiondownloadstatus
      description: getcollectiondownloadstatus
      hints:
        readOnly: true
        destructive: false
        idempotent: true
      call: predictive-oncology-model-and-data-clearinghouse-rest-api-common-controller.getcollectiondownloadstatus
      outputParameters:
      - type: object
        mapping: $.
    - name: querycollections
      description: querycollections
      hints:
        readOnly: true
        destructive: false
        idempotent: false
      call: predictive-oncology-model-and-data-clearinghouse-rest-api-common-controller.querycollections
      with:
        body: tools.body
      outputParameters:
      - type: object
        mapping: $.
    - name: generatedownloadrequesturl
      description: generatedownloadrequesturl
      hints:
        readOnly: false
        destructive: false
        idempotent: false
      call: predictive-oncology-model-and-data-clearinghouse-rest-api-common-controller.generatedownloadrequesturl
      outputParameters:
      - type: object
        mapping: $.
    - name: synchronousdownload
      description: synchronousdownload
      hints:
        readOnly: false
        destructive: false
        idempotent: false
      call: predictive-oncology-model-and-data-clearinghouse-rest-api-common-controller.synchronousdownload
      outputParameters:
      - type: object
        mapping: $.
    - name: getdataobjectdownloadstatus
      description: getdataobjectdownloadstatus
      hints:
        readOnly: true
        destructive: false
        idempotent: true
      call: predictive-oncology-model-and-data-clearinghouse-rest-api-common-controller.getdataobjectdownloadstatus
      outputParameters:
      - type: object
        mapping: $.
    - name: querydataobjects
      description: querydataobjects
      hints:
        readOnly: true
        destructive: false
        idempotent: false
      call: predictive-oncology-model-and-data-clearinghouse-rest-api-common-controller.querydataobjects
      with:
        returnParent: tools.returnParent
        body: tools.body
      outputParameters:
      - type: object
        mapping: $.
    - name: getdataobjectsorcollectionsdownloadstatus
      description: getdataobjectsorcollectionsdownloadstatus
      hints:
        readOnly: true
        destructive: false
        idempotent: true
      call: predictive-oncology-model-and-data-clearinghouse-rest-api-common-controller.getdataobjectsorcollectionsdownloadstatus
      outputParameters:
      - type: object
        mapping: $.
    - name: getstatusbytaskid
      description: getstatusbytaskid
      hints:
        readOnly: true
        destructive: false
        idempotent: true
      call: predictive-oncology-model-and-data-clearinghouse-rest-api-common-controller.getstatusbytaskid
      outputParameters:
      - type: object
        mapping: $.
    - name: performmodelevaluationfordatasets
      description: performmodelevaluationfordatasets
      hints:
        readOnly: false
        destructive: false
        idempotent: false
      call: predictive-oncology-model-and-data-clearinghouse-rest-api-common-controller.performmodelevaluationfordatasets
      with:
        type: tools.type
        body: tools.body
      outputParameters:
      - type: object
        mapping: $.
    - name: performmodelevaluationforreferencedatasets
      description: performmodelevaluationforreferencedatasets
      hints:
        readOnly: false
        destructive: false
        idempotent: false
      call: predictive-oncology-model-and-data-clearinghouse-rest-api-common-controller.performmodelevaluationforreferencedatasets
      with:
        body: tools.body
      outputParameters:
      - type: object
        mapping: $.
    - name: collectiondownload
      description: collectiondownload
      hints:
        readOnly: false
        destructive: false
        idempotent: false
      call: predictive-oncology-model-and-data-clearinghouse-rest-api-common-controller.collectiondownload
      with:
        body: tools.body
      outputParameters:
      - type: object
        mapping: $.
    - name: getdataobject
      description: getdataobject
      hints:
        readOnly: true
        destructive: false
        idempotent: true
      call: predictive-oncology-model-and-data-clearinghouse-rest-api-common-controller.getdataobject
      with:
        includeAcl: tools.includeAcl
        excludeParentMetadata: tools.excludeParentMetadata
      outputParameters:
      - type: object
        mapping: $.
    - name: registerdataobject
      description: registerdataobject
      hints:
        readOnly: false
        destructive: false
        idempotent: true
      call: predictive-oncology-model-and-data-clearinghouse-rest-api-common-controller.registerdataobject
      with:
        body: tools.body
      outputParameters:
      - type: object
        mapping: $.
    - name: syncandasynchronousdownload
      description: syncandasynchronousdownload
      hints:
        readOnly: false
        destructive: false
        idempotent: false
      call: predictive-oncology-model-and-data-clearinghouse-rest-api-common-controller.syncandasynchronousdownload
      with:
        body: tools.body
      outputParameters:
      - type: object
        mapping: $.
    - name: downloaddataobjectsorcollections
      description: downloaddataobjectsorcollections
      hints:
        readOnly: false
        destructive: false
        idempotent: false
      call: predictive-oncology-model-and-data-clearinghouse-rest-api-common-controller.downloaddataobjectsorcollections
      with:
        body: tools.body
      outputParameters:
      - type: object
        mapping: $.
    - name: bulkregistration
      description: bulkregistration
      hints:
        readOnly: false
        destructive: false
        idempotent: true
      call: predictive-oncology-model-and-data-clearinghouse-rest-api-common-controller.bulkregistration
      with:
        body: tools.body
      outputParameters:
      - type: object
        mapping: $.
    - name: getdataobjectsregistrationstatus
      description: getdataobjectsregistrationstatus
      hints:
        readOnly: true
        destructive: false
        idempotent: true
      call: predictive-oncology-model-and-data-clearinghouse-rest-api-common-controller.getdataobjectsregistrationstatus
      outputParameters:
      - type: object
        mapping: $.