{
  "opencollection": "1.0.0",
  "info": {
    "name": "Pathway Analysis Service database identifiers API",
    "version": "2.0"
  },
  "items": [
    {
      "info": {
        "name": "identifiers",
        "type": "folder"
      },
      "items": [
        {
          "info": {
            "name": "Analyse the post identifiers over the different species",
            "type": "http"
          },
          "http": {
            "method": "POST",
            "url": "/AnalysisService/identifiers/",
            "params": [
              {
                "name": "interactors",
                "value": "false",
                "type": "query",
                "description": "Include interactors"
              },
              {
                "name": "species",
                "value": "",
                "type": "query",
                "description": "list of species to filter the result (accepts taxonomy ids, species names and dbId)"
              },
              {
                "name": "pageSize",
                "value": "20",
                "type": "query",
                "description": "pathways per page"
              },
              {
                "name": "page",
                "value": "1",
                "type": "query",
                "description": "page number"
              },
              {
                "name": "sortBy",
                "value": "",
                "type": "query"
              },
              {
                "name": "order",
                "value": "",
                "type": "query"
              },
              {
                "name": "resource",
                "value": "",
                "type": "query"
              },
              {
                "name": "pValue",
                "value": "1",
                "type": "query",
                "description": "defines the pValue threshold. Only hit pathway with pValue equals or below the threshold will be returned"
              },
              {
                "name": "includeDisease",
                "value": "true",
                "type": "query",
                "description": "set to 'false' to exclude the disease pathways from the result (it does not alter the statistics)"
              },
              {
                "name": "min",
                "value": "",
                "type": "query",
                "description": "minimum number of contained entities per pathway (takes into account the resource)"
              },
              {
                "name": "max",
                "value": "",
                "type": "query",
                "description": "maximum number of contained entities per pathway (takes into account the resource)"
              },
              {
                "name": "importableOnly",
                "value": "",
                "type": "query",
                "description": "Filters resources to only includes importable ones"
              }
            ]
          },
          "docs": "Use page and pageSize to reduce the amount of data retrieved. Use sortBy and order to sort the result by your preferred option. The resource field will filter the results to show only those corresponding to the preferred molecule type (TOTAL includes all the different molecules type). The token which includes analysis results are available for 7 days after your last execution, you have to re-generate it if you would like to keep using the token."
        },
        {
          "info": {
            "name": "Analyse the identifiers in the file over the different species",
            "type": "http"
          },
          "http": {
            "method": "POST",
            "url": "/AnalysisService/identifiers/form",
            "params": [
              {
                "name": "interactors",
                "value": "false",
                "type": "query",
                "description": "Include interactors"
              },
              {
                "name": "species",
                "value": "",
                "type": "query",
                "description": "list of species to filter the result (accepts taxonomy ids, species names and dbId)"
              },
              {
                "name": "pageSize",
                "value": "20",
                "type": "query",
                "description": "pathways per page"
              },
              {
                "name": "page",
                "value": "1",
                "type": "query",
                "description": "page number"
              },
              {
                "name": "sortBy",
                "value": "",
                "type": "query"
              },
              {
                "name": "order",
                "value": "",
                "type": "query"
              },
              {
                "name": "resource",
                "value": "",
                "type": "query"
              },
              {
                "name": "pValue",
                "value": "1",
                "type": "query",
                "description": "defines the pValue threshold. Only hit pathway with pValue equals or below the threshold will be returned"
              },
              {
                "name": "includeDisease",
                "value": "true",
                "type": "query",
                "description": "set to 'false' to exclude the disease pathways from the result (it does not alter the statistics)"
              },
              {
                "name": "min",
                "value": "",
                "type": "query",
                "description": "minimum number of contained entities per pathway (takes into account the resource)"
              },
              {
                "name": "max",
                "value": "",
                "type": "query",
                "description": "maximum number of contained entities per pathway (takes into account the resource)"
              },
              {
                "name": "importableOnly",
                "value": "",
                "type": "query",
                "description": "Filters resources to only includes importable ones"
              }
            ],
            "body": {
              "type": "multipart-form",
              "data": [
                {
                  "name": "file",
                  "type": "text",
                  "value": ""
                }
              ]
            }
          },
          "docs": "Use page and pageSize to reduce the amount of data retrieved. Use sortBy and order to sort the result by your preferred option. The resource field will filter the results to show only those corresponding to the preferred molecule type (TOTAL includes all the different molecules type)"
        },
        {
          "info": {
            "name": "Analyse the identifiers in the file over the different species and projects the result to Homo Sapiens",
            "type": "http"
          },
          "http": {
            "method": "POST",
            "url": "/AnalysisService/identifiers/form/projection",
            "params": [
              {
                "name": "interactors",
                "value": "false",
                "type": "query",
                "description": "Include interactors"
              },
              {
                "name": "pageSize",
                "value": "20",
                "type": "query",
                "description": "pathways per page"
              },
              {
                "name": "page",
                "value": "1",
                "type": "query",
                "description": "page number"
              },
              {
                "name": "sortBy",
                "value": "",
                "type": "query"
              },
              {
                "name": "order",
                "value": "",
                "type": "query"
              },
              {
                "name": "resource",
                "value": "",
                "type": "query"
              },
              {
                "name": "pValue",
                "value": "1",
                "type": "query",
                "description": "defines the pValue threshold. Only hit pathway with pValue equals or below the threshold will be returned"
              },
              {
                "name": "includeDisease",
                "value": "true",
                "type": "query",
                "description": "set to 'false' to exclude the disease pathways from the result (it does not alter the statistics)"
              },
              {
                "name": "min",
                "value": "",
                "type": "query",
                "description": "minimum number of contained entities per pathway (takes into account the resource)"
              },
              {
                "name": "max",
                "value": "",
                "type": "query",
                "description": "maximum number of contained entities per pathway (takes into account the resource)"
              },
              {
                "name": "importableOnly",
                "value": "",
                "type": "query",
                "description": "Filters resources to only includes importable ones"
              }
            ],
            "body": {
              "type": "multipart-form",
              "data": [
                {
                  "name": "file",
                  "type": "text",
                  "value": ""
                }
              ]
            }
          },
          "docs": "The projection is calculated by the orthologous slot in the Reactome database. Use page and pageSize to reduce the amount of data retrieved. Use sortBy and order to sort the result by your preferred option. The resource field will filter the results to show only those corresponding to the preferred molecule type (TOTAL includes all the different molecules type)"
        },
        {
          "info": {
            "name": "Analyse the post identifiers over the different species and projects the result to Homo Sapiens",
            "type": "http"
          },
          "http": {
            "method": "POST",
            "url": "/AnalysisService/identifiers/projection",
            "params": [
              {
                "name": "interactors",
                "value": "false",
                "type": "query",
                "description": "Include interactors"
              },
              {
                "name": "pageSize",
                "value": "20",
                "type": "query",
                "description": "pathways per page"
              },
              {
                "name": "page",
                "value": "1",
                "type": "query",
                "description": "page number"
              },
              {
                "name": "sortBy",
                "value": "",
                "type": "query"
              },
              {
                "name": "order",
                "value": "",
                "type": "query"
              },
              {
                "name": "resource",
                "value": "",
                "type": "query"
              },
              {
                "name": "pValue",
                "value": "1",
                "type": "query",
                "description": "defines the pValue threshold. Only hit pathway with pValue equals or below the threshold will be returned"
              },
              {
                "name": "includeDisease",
                "value": "true",
                "type": "query",
                "description": "set to 'false' to exclude the disease pathways from the result (it does not alter the statistics)"
              },
              {
                "name": "min",
                "value": "",
                "type": "query",
                "description": "minimum number of contained entities per pathway (takes into account the resource)"
              },
              {
                "name": "max",
                "value": "",
                "type": "query",
                "description": "maximum number of contained entities per pathway (takes into account the resource)"
              },
              {
                "name": "importableOnly",
                "value": "",
                "type": "query",
                "description": "Filters resources to only includes importable ones"
              }
            ]
          },
          "docs": "The projection is calculated by the orthologous slot in the Reactome database. Use page and pageSize to reduce the amount of data retrieved. Use sortBy and order to sort the result by your preferred option. The resource field will filter the results to show only those corresponding to the preferred molecule type (TOTAL includes all the different molecules type)"
        },
        {
          "info": {
            "name": "Analyse the identifiers contained in the provided url over the different species",
            "type": "http"
          },
          "http": {
            "method": "POST",
            "url": "/AnalysisService/identifiers/url",
            "params": [
              {
                "name": "interactors",
                "value": "false",
                "type": "query",
                "description": "Include interactors"
              },
              {
                "name": "species",
                "value": "",
                "type": "query",
                "description": "list of species to filter the result (accepts taxonomy ids, species names and dbId)"
              },
              {
                "name": "pageSize",
                "value": "20",
                "type": "query",
                "description": "pathways per page"
              },
              {
                "name": "page",
                "value": "1",
                "type": "query",
                "description": "page number"
              },
              {
                "name": "sortBy",
                "value": "",
                "type": "query"
              },
              {
                "name": "order",
                "value": "",
                "type": "query"
              },
              {
                "name": "resource",
                "value": "",
                "type": "query"
              },
              {
                "name": "pValue",
                "value": "1",
                "type": "query",
                "description": "defines the pValue threshold. Only hit pathway with pValue equals or below the threshold will be returned"
              },
              {
                "name": "includeDisease",
                "value": "true",
                "type": "query",
                "description": "set to 'false' to exclude the disease pathways from the result (it does not alter the statistics)"
              },
              {
                "name": "min",
                "value": "",
                "type": "query",
                "description": "minimum number of contained entities per pathway (takes into account the resource)"
              },
              {
                "name": "max",
                "value": "",
                "type": "query",
                "description": "maximum number of contained entities per pathway (takes into account the resource)"
              },
              {
                "name": "importableOnly",
                "value": "",
                "type": "query",
                "description": "Filters resources to only includes importable ones"
              }
            ]
          },
          "docs": "Use page and pageSize to reduce the amount of data retrieved. Use sortBy and order to sort the result by your preferred option. The resource field will filter the results to show only those corresponding to the preferred molecule type (TOTAL includes all the different molecules type)"
        },
        {
          "info": {
            "name": "Analyse the identifiers contained in the provided url over the different species and projects the result to Homo Sapiens",
            "type": "http"
          },
          "http": {
            "method": "POST",
            "url": "/AnalysisService/identifiers/url/projection",
            "params": [
              {
                "name": "interactors",
                "value": "false",
                "type": "query",
                "description": "Include interactors"
              },
              {
                "name": "pageSize",
                "value": "20",
                "type": "query",
                "description": "pathways per page"
              },
              {
                "name": "page",
                "value": "1",
                "type": "query",
                "description": "page number"
              },
              {
                "name": "sortBy",
                "value": "",
                "type": "query"
              },
              {
                "name": "order",
                "value": "",
                "type": "query"
              },
              {
                "name": "resource",
                "value": "",
                "type": "query"
              },
              {
                "name": "pValue",
                "value": "1",
                "type": "query",
                "description": "defines the pValue threshold. Only hit pathway with pValue equals or below the threshold will be returned"
              },
              {
                "name": "includeDisease",
                "value": "true",
                "type": "query",
                "description": "set to 'false' to exclude the disease pathways from the result (it does not alter the statistics)"
              },
              {
                "name": "min",
                "value": "",
                "type": "query",
                "description": "minimum number of contained entities per pathway (takes into account the resource)"
              },
              {
                "name": "max",
                "value": "",
                "type": "query",
                "description": "maximum number of contained entities per pathway (takes into account the resource)"
              },
              {
                "name": "importableOnly",
                "value": "",
                "type": "query",
                "description": "Filters resources to only includes importable ones"
              }
            ]
          },
          "docs": "The projection is calculated by the orthologous slot in the Reactome database. Use page and pageSize to reduce the amount of data retrieved. Use sortBy and order to sort the result by your preferred option. The resource field will filter the results to show only those corresponding to the preferred molecule type (TOTAL includes all the different molecules type)"
        }
      ]
    }
  ],
  "bundled": true
}