{
  "opencollection": "1.0.0",
  "info": {
    "name": "Pathway Analysis Service database interactors API",
    "version": "2.0"
  },
  "items": [
    {
      "info": {
        "name": "interactors",
        "type": "folder"
      },
      "items": [
        {
          "info": {
            "name": "Retrieve clustered interaction, sorted by score, of a given accession by resource.",
            "type": "http"
          },
          "http": {
            "method": "GET",
            "url": "/AnalysisService/interactors/psicquic/molecule/:resource/:acc/details",
            "params": [
              {
                "name": "resource",
                "value": "MINT",
                "type": "path",
                "description": "PSICQUIC Resource"
              },
              {
                "name": "acc",
                "value": "Q13501",
                "type": "path",
                "description": "Single Accession"
              },
              {
                "name": "view",
                "value": "",
                "type": "query",
                "description": "Global parameter - Customise the view to be more concise and/or aggregate relationships"
              },
              {
                "name": "includeRef",
                "value": "",
                "type": "query",
                "description": "Global parameter - If true, replace element ref to dbId by standard JSOG object {@ref}"
              }
            ]
          },
          "docs": "Retrieve clustered interaction, sorted by score, of a given accession by resource."
        },
        {
          "info": {
            "name": "Retrieve a summary of a given accession by resource",
            "type": "http"
          },
          "http": {
            "method": "GET",
            "url": "/AnalysisService/interactors/psicquic/molecule/:resource/:acc/summary",
            "params": [
              {
                "name": "resource",
                "value": "MINT",
                "type": "path",
                "description": "PSICQUIC Resource"
              },
              {
                "name": "acc",
                "value": "Q13501",
                "type": "path",
                "description": "Single Accession"
              },
              {
                "name": "view",
                "value": "",
                "type": "query",
                "description": "Global parameter - Customise the view to be more concise and/or aggregate relationships"
              },
              {
                "name": "includeRef",
                "value": "",
                "type": "query",
                "description": "Global parameter - If true, replace element ref to dbId by standard JSOG object {@ref}"
              }
            ]
          },
          "docs": "Retrieve a summary of a given accession by resource"
        },
        {
          "info": {
            "name": "Retrieve clustered interaction, sorted by score, of a given accession(s) by resource.",
            "type": "http"
          },
          "http": {
            "method": "POST",
            "url": "/AnalysisService/interactors/psicquic/molecules/:resource/details",
            "params": [
              {
                "name": "resource",
                "value": "",
                "type": "path",
                "description": "PSICQUIC Resource"
              },
              {
                "name": "view",
                "value": "",
                "type": "query",
                "description": "Global parameter - Customise the view to be more concise and/or aggregate relationships"
              },
              {
                "name": "includeRef",
                "value": "",
                "type": "query",
                "description": "Global parameter - If true, replace element ref to dbId by standard JSOG object {@ref}"
              }
            ]
          },
          "docs": "Retrieve clustered interaction, sorted by score, of a given accession(s) by resource."
        },
        {
          "info": {
            "name": "Retrieve a summary of a given accession list by resource.",
            "type": "http"
          },
          "http": {
            "method": "POST",
            "url": "/AnalysisService/interactors/psicquic/molecules/:resource/summary",
            "params": [
              {
                "name": "resource",
                "value": "",
                "type": "path",
                "description": "PSICQUIC Resource"
              },
              {
                "name": "view",
                "value": "",
                "type": "query",
                "description": "Global parameter - Customise the view to be more concise and/or aggregate relationships"
              },
              {
                "name": "includeRef",
                "value": "",
                "type": "query",
                "description": "Global parameter - If true, replace element ref to dbId by standard JSOG object {@ref}"
              }
            ]
          },
          "docs": "Retrieve a summary of a given accession list by resource."
        },
        {
          "info": {
            "name": "Retrieve a list of all Psicquic Registries services",
            "type": "http"
          },
          "http": {
            "method": "GET",
            "url": "/AnalysisService/interactors/psicquic/resources",
            "params": [
              {
                "name": "view",
                "value": "",
                "type": "query",
                "description": "Global parameter - Customise the view to be more concise and/or aggregate relationships"
              },
              {
                "name": "includeRef",
                "value": "",
                "type": "query",
                "description": "Global parameter - If true, replace element ref to dbId by standard JSOG object {@ref}"
              }
            ]
          },
          "docs": "Retrieve a list of all Psicquic Registries services"
        },
        {
          "info": {
            "name": "Retrieve a custom interaction information of a given accession in Reactome knowledgebase for UI to use, including Reactome entity number",
            "type": "http"
          },
          "http": {
            "method": "GET",
            "url": "/AnalysisService/interactors/static/molecule/enhanced/:acc/details",
            "params": [
              {
                "name": "acc",
                "value": "Q13501",
                "type": "path",
                "description": "Interactor accession (or identifier)"
              },
              {
                "name": "view",
                "value": "",
                "type": "query",
                "description": "Global parameter - Customise the view to be more concise and/or aggregate relationships"
              },
              {
                "name": "includeRef",
                "value": "",
                "type": "query",
                "description": "Global parameter - If true, replace element ref to dbId by standard JSOG object {@ref}"
              }
            ]
          },
          "docs": "Retrieve a custom interaction information of a given accession in Reactome knowledgebase for UI to use, including Reactome entity number"
        },
        {
          "info": {
            "name": "Retrieve a detailed interaction information of a given accession",
            "type": "http"
          },
          "http": {
            "method": "GET",
            "url": "/AnalysisService/interactors/static/molecule/:acc/details",
            "params": [
              {
                "name": "acc",
                "value": "Q13501",
                "type": "path",
                "description": "Interactor accession (or identifier)"
              },
              {
                "name": "page",
                "value": "",
                "type": "query",
                "description": "For paginating the results"
              },
              {
                "name": "pageSize",
                "value": "",
                "type": "query",
                "description": "Number of results to be retrieved"
              },
              {
                "name": "view",
                "value": "",
                "type": "query",
                "description": "Global parameter - Customise the view to be more concise and/or aggregate relationships"
              },
              {
                "name": "includeRef",
                "value": "",
                "type": "query",
                "description": "Global parameter - If true, replace element ref to dbId by standard JSOG object {@ref}"
              }
            ]
          },
          "docs": "Retrieve a detailed interaction information of a given accession"
        },
        {
          "info": {
            "name": "Retrieve a list of lower level pathways where the interacting molecules can be found",
            "type": "http"
          },
          "http": {
            "method": "GET",
            "url": "/AnalysisService/interactors/static/molecule/:acc/pathways",
            "params": [
              {
                "name": "acc",
                "value": "Q9BXM7-1",
                "type": "path",
                "description": "Accession"
              },
              {
                "name": "species",
                "value": "Homo sapiens",
                "type": "query",
                "description": "The species name for which the pathways are requested  (e.g. 'Homo sapiens')"
              },
              {
                "name": "onlyDiagrammed",
                "value": "false",
                "type": "query",
                "description": "Specifies whether the pathways has to have an associated diagram or not"
              },
              {
                "name": "view",
                "value": "",
                "type": "query",
                "description": "Global parameter - Customise the view to be more concise and/or aggregate relationships"
              },
              {
                "name": "includeRef",
                "value": "",
                "type": "query",
                "description": "Global parameter - If true, replace element ref to dbId by standard JSOG object {@ref}"
              }
            ]
          },
          "docs": "Retrieve a list of lower level pathways where the interacting molecules can be found"
        },
        {
          "info": {
            "name": "Retrieve a summary of a given accession",
            "type": "http"
          },
          "http": {
            "method": "GET",
            "url": "/AnalysisService/interactors/static/molecule/:acc/summary",
            "params": [
              {
                "name": "acc",
                "value": "Q13501",
                "type": "path",
                "description": "Accession"
              },
              {
                "name": "view",
                "value": "",
                "type": "query",
                "description": "Global parameter - Customise the view to be more concise and/or aggregate relationships"
              },
              {
                "name": "includeRef",
                "value": "",
                "type": "query",
                "description": "Global parameter - If true, replace element ref to dbId by standard JSOG object {@ref}"
              }
            ]
          },
          "docs": "Retrieve a summary of a given accession"
        },
        {
          "info": {
            "name": "Retrieve a detailed interaction information of a given accession",
            "type": "http"
          },
          "http": {
            "method": "POST",
            "url": "/AnalysisService/interactors/static/molecules/details",
            "params": [
              {
                "name": "page",
                "value": "",
                "type": "query",
                "description": "For paginating the results"
              },
              {
                "name": "pageSize",
                "value": "",
                "type": "query",
                "description": "Number of results to be retrieved"
              },
              {
                "name": "view",
                "value": "",
                "type": "query",
                "description": "Global parameter - Customise the view to be more concise and/or aggregate relationships"
              },
              {
                "name": "includeRef",
                "value": "",
                "type": "query",
                "description": "Global parameter - If true, replace element ref to dbId by standard JSOG object {@ref}"
              }
            ]
          },
          "docs": "Retrieve a detailed interaction information of a given accession"
        },
        {
          "info": {
            "name": "Retrieve a summary of a given accession list",
            "type": "http"
          },
          "http": {
            "method": "POST",
            "url": "/AnalysisService/interactors/static/molecules/summary",
            "params": [
              {
                "name": "view",
                "value": "",
                "type": "query",
                "description": "Global parameter - Customise the view to be more concise and/or aggregate relationships"
              },
              {
                "name": "includeRef",
                "value": "",
                "type": "query",
                "description": "Global parameter - If true, replace element ref to dbId by standard JSOG object {@ref}"
              }
            ]
          },
          "docs": "Retrieve a summary of a given accession list"
        },
        {
          "info": {
            "name": "Retrieve custom interactions associated with a token",
            "type": "http"
          },
          "http": {
            "method": "POST",
            "url": "/AnalysisService/interactors/token/:token",
            "params": [
              {
                "name": "token",
                "value": "",
                "type": "path",
                "description": "A token associated with a data submission"
              },
              {
                "name": "view",
                "value": "",
                "type": "query",
                "description": "Global parameter - Customise the view to be more concise and/or aggregate relationships"
              },
              {
                "name": "includeRef",
                "value": "",
                "type": "query",
                "description": "Global parameter - If true, replace element ref to dbId by standard JSOG object {@ref}"
              }
            ]
          },
          "docs": "Retrieve custom interactions associated with a token"
        },
        {
          "info": {
            "name": "Registry custom PSICQUIC resource",
            "type": "http"
          },
          "http": {
            "method": "POST",
            "url": "/AnalysisService/interactors/upload/psicquic/url",
            "params": [
              {
                "name": "name",
                "value": "",
                "type": "query",
                "description": "Name which identifies the custom psicquic"
              },
              {
                "name": "view",
                "value": "",
                "type": "query",
                "description": "Global parameter - Customise the view to be more concise and/or aggregate relationships"
              },
              {
                "name": "includeRef",
                "value": "",
                "type": "query",
                "description": "Global parameter - If true, replace element ref to dbId by standard JSOG object {@ref}"
              }
            ]
          },
          "docs": "Registry custom PSICQUIC resource"
        },
        {
          "info": {
            "name": "Paste file content and get a summary associated with a token",
            "type": "http"
          },
          "http": {
            "method": "POST",
            "url": "/AnalysisService/interactors/upload/tuple/content",
            "params": [
              {
                "name": "name",
                "value": "",
                "type": "query",
                "description": "Name which identifies the sample"
              },
              {
                "name": "view",
                "value": "",
                "type": "query",
                "description": "Global parameter - Customise the view to be more concise and/or aggregate relationships"
              },
              {
                "name": "includeRef",
                "value": "",
                "type": "query",
                "description": "Global parameter - If true, replace element ref to dbId by standard JSOG object {@ref}"
              }
            ]
          },
          "docs": "Paste file content and get a summary associated with a token"
        },
        {
          "info": {
            "name": "Parse file and retrieve a summary associated with a token",
            "type": "http"
          },
          "http": {
            "method": "POST",
            "url": "/AnalysisService/interactors/upload/tuple/form",
            "params": [
              {
                "name": "name",
                "value": "",
                "type": "query",
                "description": "Name which identifies the sample"
              },
              {
                "name": "view",
                "value": "",
                "type": "query",
                "description": "Global parameter - Customise the view to be more concise and/or aggregate relationships"
              },
              {
                "name": "includeRef",
                "value": "",
                "type": "query",
                "description": "Global parameter - If true, replace element ref to dbId by standard JSOG object {@ref}"
              }
            ],
            "body": {
              "type": "multipart-form",
              "data": [
                {
                  "name": "file",
                  "type": "text",
                  "value": ""
                }
              ]
            }
          },
          "docs": "Parse file and retrieve a summary associated with a token"
        },
        {
          "info": {
            "name": "Send file via URL and get a summary associated with a token",
            "type": "http"
          },
          "http": {
            "method": "POST",
            "url": "/AnalysisService/interactors/upload/tuple/url",
            "params": [
              {
                "name": "name",
                "value": "",
                "type": "query",
                "description": "Name which identifies the sample"
              },
              {
                "name": "view",
                "value": "",
                "type": "query",
                "description": "Global parameter - Customise the view to be more concise and/or aggregate relationships"
              },
              {
                "name": "includeRef",
                "value": "",
                "type": "query",
                "description": "Global parameter - If true, replace element ref to dbId by standard JSOG object {@ref}"
              }
            ]
          },
          "docs": "Send file via URL and get a summary associated with a token"
        }
      ]
    }
  ],
  "bundled": true
}