{ "opencollection": "1.0.0", "info": { "name": "Pathway Analysis Service database participants API", "version": "2.0" }, "items": [ { "info": { "name": "participants", "type": "folder" }, "items": [ { "info": { "name": "A list of participants for a given event", "type": "http" }, "http": { "method": "GET", "url": "/AnalysisService/data/participants/:id", "params": [ { "name": "id", "value": "5205685", "type": "path", "description": "DbId or StId of an Event" }, { "name": "view", "value": "", "type": "query", "description": "Global parameter - Customise the view to be more concise and/or aggregate relationships" }, { "name": "includeRef", "value": "", "type": "query", "description": "Global parameter - If true, replace element ref to dbId by standard JSOG object {@ref}" } ] }, "docs": "Participants contains a PhysicalEntity (dbId, displayName) and a collection of ReferenceEntities (dbId, name, identifier, url)" }, { "info": { "name": "A list of participating PhysicalEntities for a given event", "type": "http" }, "http": { "method": "GET", "url": "/AnalysisService/data/participants/:id/participatingPhysicalEntities", "params": [ { "name": "id", "value": "R-HSA-5205685", "type": "path", "description": "The event for which the participating PhysicalEntities are requested" }, { "name": "view", "value": "", "type": "query", "description": "Global parameter - Customise the view to be more concise and/or aggregate relationships" }, { "name": "includeRef", "value": "", "type": "query", "description": "Global parameter - If true, replace element ref to dbId by standard JSOG object {@ref}" } ] }, "docs": "This method retrieves all the PhysicalEntities that take part in a given event. It is worth mentioning that because a pathway can contain smaller pathways (subpathways), the method also recursively retrieves the PhysicalEntities from every constituent pathway." }, { "info": { "name": "A list of participating ReferenceEntities for a given event", "type": "http" }, "http": { "method": "GET", "url": "/AnalysisService/data/participants/:id/referenceEntities", "params": [ { "name": "id", "value": "5205685", "type": "path", "description": "The event for which the participating ReferenceEntities are requested" }, { "name": "view", "value": "", "type": "query", "description": "Global parameter - Customise the view to be more concise and/or aggregate relationships" }, { "name": "includeRef", "value": "", "type": "query", "description": "Global parameter - If true, replace element ref to dbId by standard JSOG object {@ref}" } ] }, "docs": "PhysicalEntity instances that represent, e.g., the same chemical in different compartments, or different post-translationally modified forms of a single protein, share numerous invariant features such as names, molecular structure and links to external databases like UniProt or ChEBI.
To enable storage of this shared information in a single place, and to create an explicit link among all the variant forms of what can also be seen as a single chemical entity, Reactome creates instances of the " } ] } ], "bundled": true }