openapi: 3.2.0
info:
  title: Seven Bridges Tasks API
  version: unknown
  description: 'Operations tagged Tasks across 2 of this provider''s published API definitions: seven-bridges-cgc-openapi.json, seven-bridges-platform-openapi.json. Each path carries the servers of the definition it was published in.'
servers:
- url: https://cgc-api.sbgenomics.com/v2
- url: https://api.sbgenomics.com/v2
security:
- {}
tags:
- name: Tasks
paths:
  /v2/tasks:
    post:
      summary: Create a new draft task
      description: /tasks
      operationId: create-a-new-task
      responses:
        '200':
          description: '200'
          content:
            application/json:
              examples:
                Result:
                  value: '{}'
              schema:
                type: object
                properties: {}
        '400':
          description: '400'
          content:
            application/json:
              examples:
                Result:
                  value: '{}'
              schema:
                type: object
                properties: {}
      deprecated: false
      tags:
      - Tasks
    get:
      summary: List tasks you can access (primary method)
      description: /tasks
      operationId: list-tasks-you-can-access
      responses:
        '200':
          description: '200'
          content:
            application/json:
              examples:
                Result:
                  value: '{}'
              schema:
                type: object
                properties: {}
        '400':
          description: '400'
          content:
            application/json:
              examples:
                Result:
                  value: '{}'
              schema:
                type: object
                properties: {}
      deprecated: false
      tags:
      - Tasks
    servers:
    - url: https://cgc-api.sbgenomics.com/v2
  /tasks/{task_id}:
    patch:
      summary: Modify a task
      description: /tasks/{task_id}
      operationId: modify-a-task
      responses:
        '200':
          description: '200'
          content:
            application/json:
              examples:
                Result:
                  value: '{}'
              schema:
                type: object
                properties: {}
        '400':
          description: '400'
          content:
            application/json:
              examples:
                Result:
                  value: '{}'
              schema:
                type: object
                properties: {}
      deprecated: false
      tags:
      - Tasks
    delete:
      summary: Delete a task
      description: This call deletes the specified task. The task is referred to by its ID, which you can obtain by making the call to [list all tasks you can access](ref:list-tasks-you-can-access).
      operationId: delete-a-task
      parameters:
      - name: X-SBG-Auth-Token
        in: header
        description: Your Seven Bridges Platform [authentication token](doc:get-your-authentication-token). For security reasons, token will not be automatically populated in the generated code sample. Please replace `<your-token-here>` with your token before executing this call.
        required: true
        schema:
          type: string
      - name: task_id
        in: path
        description: The ID of the task you are deleting. See the section on [specifying tasks](ref:section-tasks) for details.
        schema:
          type: string
        required: true
      deprecated: false
      x-readme:
        code-samples:
        - language: python
          code: "from sevenbridges import Api\n\napi = Api(url='https://api.sbgenomics.com/v2',\n          token='3210a98c1db9318fa9d9273156740f74')\n\ntask = api.tasks.get(id='723c949a-789c-12b3-45b6-b2dd0d8d0021')\n\n# send DELETE request to SB API\ntask.delete()"
        samples-languages:
        - python
      tags:
      - Tasks
    get:
      summary: Get details of a task
      description: 'This call returns details of the specified task. The task is referred to by its ID, which you can obtain by making the call to [list all tasks you can access](ref:list-tasks-you-can-access).


        The task details include its creator, its start and end time, the number of jobs completed in it, and its input and output files. You can also see the status of the task.'
      operationId: get-details-of-a-task
      parameters:
      - name: X-SBG-Auth-Token
        in: header
        description: Your Seven Bridges Platform [authentication token](doc:get-your-authentication-token). For security reasons, token will not be automatically populated in the generated code sample. Please replace `<your-token-here>` with your token before executing this call.
        required: true
        schema:
          type: string
      - name: task_id
        in: path
        description: The ID of the task you are querying.
        schema:
          type: string
        required: true
      - name: fields
        in: query
        description: Selector specifying a subset of fields to include in the response.
        schema:
          type: array
          items:
            type: string
      responses:
        '200':
          description: '200'
          content:
            application/json:
              examples:
                Regular task response body:
                  value: "{\n  \"href\": \"https://api.sbgenomics.com/v2/tasks/bd5e95d9-12b3-789c-45b6-34d8696571a9\",\n  \"id\": \"bd5e95d9-12b3-789c-45b6-34d8696571a9\",\n  \"name\": \"grep run - 11-26-15 14:14:14\",\n  \"status\": \"COMPLETED\",\n  \"project\": \"RFranklin/test\",\n  \"use_interruptible_instances\": false,\n  \"execution_settings\": {\n          \"instance_type\": \"c4.2xlarge;ebs-gp2;2000\",\n          \"max_parallel_instances\": 1\n      },\n  \"app\": \"rfranklin/my-project/grep/5\",\n  \"type\": \"v2\",\n  \"batch\": false,\n  \"created_by\": \"RFranklin\",\n  \"executed_by\": \"RFranklin\",\n  \"start_time\": \"2015-11-26T14:14:14Z\",\n  \"end_time\": \"2015-11-26T14:20:30Z\",\n  \"execution_status\": {\n        \"steps_completed\": 19,\n        \"system_limit\": false,\n        \"account_limit\": false,\n        \"instance_init\": false,\n        \"steps_total\": 19,\n        \"message\": \"Completed\",\n        \"duration\": 0,\n        \"queued_duration\": 0,\n        \"running_duration\": 0,\n        \"execution_duration\": 0\n      },\n  \"price\": {\n    \"currency\": \"USD\",\n    \"amount\": \"0.23\",\n    \"breakdown\": {\n      \"storage\": \"0.00\",\n      \"computation\": \"0.23\"\n    }\n  },\n  \"origin_id\": \"723c949a-789c-12b3-45b6-b2dd0d8d0021\",\n  \"inputs\": {\n    \"file_to_search\": {\n      \"class\": \"File\",\n      \"path\": \"567890abc9b0307bc0414164\",\n      \"name\": \"test-text.txt\"\n    },\n    \"lines_of_context\": 2,\n    \"pattern_to_find\": \"word\"\n  },\n  \"outputs\": {\n    \"pattern_found\": {\n      \"path\": \"567890abc1e5339df0414123\",\n      \"name\": \"output.txt\",\n      \"class\": \"File\"\n    }\n  }\n}"
                Batch task response body:
                  value: "{\n    \"href\": \"https://api.sbgenomics.com/v2/tasks/a547a1c4-45c3-441e-857e-caf2a2df96ad\",\n    \"id\": \"a547a1c4-45c3-441e-857e-caf2a2df96ad\",\n    \"name\": \"wes run - 09-12-15 11:24:33\",\n    \"status\": \"ABORTED\",\n    \"project\": \"RFranklin/batch-test\",\n    \"app\": \"RFranklin/batch-test/whole-exome-sequencing-gatk-2-3-9-lite/2\",\n    \"type\": \"v2\",\n    \"created_by\": \"RFranklin\",\n    \"executed_by\": \"RFranklin\",\n    \"start_time\": \"2016-04-05T12:18:14Z\",\n    \"end_time\": \"2016-04-07T11:04:42Z\",\n    \"batch\": true,\n    \"batch_input\": \"FASTQ\",\n    \"batch_by\": {\n        \"type\": \"CRITERIA\",\n        \"criteria\": [\n            \"metadata.sample_id\",\n            \"metadata.library_id\"\n        ]\n    },\n    \"execution_status\": {\n        \"duration\": '123456789',\n        \"running_duration\": '120453636',\n        \"queued_duration\": '3456789',\n        \"message\": \"Batch tasks list initialization.\",\n        \"queued\": 0,\n        \"running\": 0,\n        \"completed\": 0,\n        \"failed\": 0,\n        \"aborted\": 0,\n        \"execution_duration\": 0,\n        \"system_limit\": false,\n        \"account_limit\": false\n    },\n    \"price\": {\n        \"currency\": \"USD\",\n        \"amount\": \"0.00\",\n    },\n    \"origin_id\": \"e1b28692-d911-4f2f-9afe-fd0213a64e41\",\n    \"inputs\": {\n        \"Known_SNPs\": [\n            {\n                \"class\": \"File\",\n                \"path\": \"5702cd5a60b27cfe6e8c13bf\",\n                \"name\": \"dbsnp_137.b37.vcf\"\n            }\n        ],\n        <snip>\n    }\n}"
              schema:
                type: object
                properties:
                  href:
                    type: string
                    example: https://api.sbgenomics.com/v2/tasks/bd5e95d9-12b3-789c-45b6-34d8696571a9
                  id:
                    type: string
                    example: bd5e95d9-12b3-789c-45b6-34d8696571a9
                  name:
                    type: string
                    example: grep run - 11-26-15 14:14:14
                  status:
                    type: string
                    example: COMPLETED
                  project:
                    type: string
                    example: RFranklin/test
                  use_interruptible_instances:
                    type: boolean
                    example: false
                    default: true
                  execution_settings:
                    type: object
                    properties:
                      instance_type:
                        type: string
                        example: c4.2xlarge;ebs-gp2;2000
                      max_parallel_instances:
                        type: integer
                        example: 1
                        default: 0
                  app:
                    type: string
                    example: rfranklin/my-project/grep/5
                  type:
                    type: string
                    example: v2
                  batch:
                    type: boolean
                    example: false
                    default: true
                  created_by:
                    type: string
                    example: RFranklin
                  executed_by:
                    type: string
                    example: RFranklin
                  start_time:
                    type: string
                    example: '2015-11-26T14:14:14Z'
                  end_time:
                    type: string
                    example: '2015-11-26T14:20:30Z'
                  execution_status:
                    type: object
                    properties:
                      steps_completed:
                        type: integer
                        example: 19
                        default: 0
                      system_limit:
                        type: boolean
                        example: false
                        default: true
                      account_limit:
                        type: boolean
                        example: false
                        default: true
                      instance_init:
                        type: boolean
                        example: false
                        default: true
                      steps_total:
                        type: integer
                        example: 19
                        default: 0
                      message:
                        type: string
                        example: Completed
                      duration:
                        type: integer
                        example: 0
                        default: 0
                      queued_duration:
                        type: integer
                        example: 0
                        default: 0
                      running_duration:
                        type: integer
                        example: 0
                        default: 0
                      execution_duration:
                        type: integer
                        example: 0
                        default: 0
                  price:
                    type: object
                    properties:
                      currency:
                        type: string
                        example: USD
                      amount:
                        type: string
                        example: '0.23'
                      breakdown:
                        type: object
                        properties:
                          storage:
                            type: string
                            example: '0.00'
                          computation:
                            type: string
                            example: '0.23'
                  origin_id:
                    type: string
                    example: 723c949a-789c-12b3-45b6-b2dd0d8d0021
                  inputs:
                    type: object
                    properties:
                      file_to_search:
                        type: object
                        properties:
                          class:
                            type: string
                            example: File
                          path:
                            type: string
                            example: 567890abc9b0307bc0414164
                          name:
                            type: string
                            example: test-text.txt
                      lines_of_context:
                        type: integer
                        example: 2
                        default: 0
                      pattern_to_find:
                        type: string
                        example: word
                  outputs:
                    type: object
                    properties:
                      pattern_found:
                        type: object
                        properties:
                          path:
                            type: string
                            example: 567890abc1e5339df0414123
                          name:
                            type: string
                            example: output.txt
                          class:
                            type: string
                            example: File
      deprecated: false
      x-readme:
        code-samples:
        - language: python
          code: "from sevenbridges import Api\n\napi = Api(url='https://api.sbgenomics.com/v2',\n          token='3210a98c1db9318fa9d9273156740f74')\n\n# send GET request to SB API for all task fields\ntask = api.tasks.get(id='bd5e95d9-12b3-789c-45b6-34d8696571a9')\n\nprint(task.name, task.id, task.status, task.description, task.app)\nprint(task.inputs)\nprint(task.outputs)"
        samples-languages:
        - python
      tags:
      - Tasks
    servers:
    - url: https://cgc-api.sbgenomics.com/v2
  /tasks/{task_id}/inputs:
    get:
      summary: Get task inputs
      description: This call returns just the inputs provided to the specified task. The task is referred to by its ID, which you can obtain by making the call to [list all tasks you can access](ref:list-tasks-you-can-access).
      operationId: get-task-inputs
      parameters:
      - name: X-SBG-Auth-Token
        in: header
        description: Your Seven Bridges Platform [authentication token](doc:get-your-authentication-token). For security reasons, token will not be automatically populated in the generated code sample. Please replace `<your-token-here>` with your token before executing this call.
        required: true
        schema:
          type: string
      - name: task_id
        in: path
        description: The ID of the task you are querying.
        schema:
          type: string
        required: true
      - name: fields
        in: query
        description: Selector specifying a subset of fields to include in the response.
        schema:
          type: array
          items:
            type: string
      responses:
        '200':
          description: '200'
          content:
            application/json:
              examples:
                Result:
                  value: "{\n    \"Known_SNPs\": [\n        {\n            \"class\": \"File\",\n            \"path\": \"567890abc9b0307bc0414164\",\n            \"name\": \"dbsnp_137.b37.vcf\"\n        }\n    ],\n    \"Known_Indels\": [\n        {\n            \"class\": \"File\",\n            \"path\": \"567890abc1e5339df0414123\",\n            \"name\": \"1000G_phase1.indels.b37.vcf\"\n        },\n        {\n            \"class\": \"File\",\n            \"path\": \"567890abc4f3066bc3750174\",\n            \"name\": \"Mills_and_1000G_gold_standard.indels.b37.sites.vcf\"\n        }\n    ],\n    \"input_file\": {\n        \"class\": \"File\",\n        \"path\": \"56796c27e4c8c560b46ab03c\",\n        \"name\": \"3d1b628fa0d554d5fefb71444511dcbb.bam\"\n    },\n    \"Target_BED\": {\n        \"class\": \"File\",\n        \"path\": \"567890abc8a5639cc6722063\",\n        \"name\": \"exome_targets.b37.bed\"\n    },\n    \"Reference\": {\n        \"class\": \"File\",\n        \"path\": \"567890abc3d8130ea4047731\",\n        \"name\": \"GRCh37-lite.fa\"\n    },\n    \"snpEff_databse\": {\n        \"class\": \"File\",\n        \"path\": \"567890abc8a5136ec6127063\",\n        \"name\": \"snpEff_v3_3_GRCh37.71.zip\"\n    },\n    \"memory_per_job\": 8000\n}"
              schema:
                type: object
                properties:
                  Known_SNPs:
                    type: array
                    items:
                      type: object
                      properties:
                        class:
                          type: string
                          example: File
                        path:
                          type: string
                          example: 567890abc9b0307bc0414164
                        name:
                          type: string
                          example: dbsnp_137.b37.vcf
                  Known_Indels:
                    type: array
                    items:
                      type: object
                      properties:
                        class:
                          type: string
                          example: File
                        path:
                          type: string
                          example: 567890abc1e5339df0414123
                        name:
                          type: string
                          example: 1000G_phase1.indels.b37.vcf
                  input_file:
                    type: object
                    properties:
                      class:
                        type: string
                        example: File
                      path:
                        type: string
                        example: 56796c27e4c8c560b46ab03c
                      name:
                        type: string
                        example: 3d1b628fa0d554d5fefb71444511dcbb.bam
                  Target_BED:
                    type: object
                    properties:
                      class:
                        type: string
                        example: File
                      path:
                        type: string
                        example: 567890abc8a5639cc6722063
                      name:
                        type: string
                        example: exome_targets.b37.bed
                  Reference:
                    type: object
                    properties:
                      class:
                        type: string
                        example: File
                      path:
                        type: string
                        example: 567890abc3d8130ea4047731
                      name:
                        type: string
                        example: GRCh37-lite.fa
                  snpEff_databse:
                    type: object
                    properties:
                      class:
                        type: string
                        example: File
                      path:
                        type: string
                        example: 567890abc8a5136ec6127063
                      name:
                        type: string
                        example: snpEff_v3_3_GRCh37.71.zip
                  memory_per_job:
                    type: integer
                    example: 8000
                    default: 0
      deprecated: false
      x-readme:
        code-samples:
        - language: python
          code: "from sevenbridges import Api\n\napi = Api(url='https://api.sbgenomics.com/v2',\n          token='3210a98c1db9318fa9d9273156740f74')\n\n# send GET request to SB API for all task fields\ntask = api.tasks.get(id='723c949a-789c-12b3-45b6-b2dd0d8d0021')\n\nprint(task.inputs)"
        samples-languages:
        - python
      tags:
      - Tasks
    patch:
      summary: Modify task inputs
      description: This call enables you to modify the inputs provided to the specified task. The task is referred to by its ID, which you can obtain by making the call to [list all tasks you can access](ref:list-tasks-you-can-access).
      operationId: modify-task-inputs
      parameters:
      - name: X-SBG-Auth-Token
        in: header
        description: Your Seven Bridges Platform [authentication token](doc:get-your-authentication-token). For security reasons, token will not be automatically populated in the generated code sample. Please replace `<your-token-here>` with your token before executing this call.
        required: true
        schema:
          type: string
      - name: fields
        in: query
        description: Selector specifying a subset of fields to include in the response.
        schema:
          type: array
          items:
            type: string
      - name: task_id
        in: path
        description: The ID of the task you are querying
        schema:
          type: string
        required: true
      requestBody:
        content:
          application/json:
            schema:
              type: object
              properties:
                RAW_BODY:
                  type: array
                  description: In the body of the request, you should enter some or all of the key-value pairs contained in the input object for the task. See the section on [specifying task inputs](doc:the-api#section-inputs) for information on creating task input objects. In the example request, make sure to replace `{input_id}` with the actual ID of the input you are modifying.
                  items:
                    properties:
                      '{input_id}':
                        type: object
                        properties:
                          class:
                            type: string
                            description: Input value type. If this is a file, the value is `File`.
                            default: File
                          path:
                            type: string
                            description: File ID for file inputs.
                          name:
                            type: string
                            description: Name of the file for file inputs.
                    type: object
      responses:
        '200':
          description: '200'
          content:
            application/json:
              examples:
                Result:
                  value: "{\n  \"dispersion_threshold\": null,\n  \"cuffdiff_zip\": {\n    \"class\": \"File\",\n    \"path\": \"567890abc9b0307bc0414164\",\n    \"name\": \"new-file-name.vcf\"\n  },\n  \"density_threshold\": null,\n  \"thresholds_off\": null\n}\n"
              schema:
                type: object
                properties:
                  dispersion_threshold: {}
                  cuffdiff_zip:
                    type: object
                    properties:
                      class:
                        type: string
                        example: File
                      path:
                        type: string
                        example: 567890abc9b0307bc0414164
                      name:
                        type: string
                        example: new-file-name.vcf
                  density_threshold: {}
                  thresholds_off: {}
      deprecated: false
      x-readme:
        code-samples:
        - language: python
          code: "from sevenbridges import Api\n\napi = Api(url='https://api.sbgenomics.com/v2',\n          token='3210a98c1db9318fa9d9273156740f74')\n\ntask = api.tasks.get(id='48f79ccf-12b3-45b6-789c-b1e8d88dabcd')\n\ntask.inputs['cuffdiff_zip'] = api.files.get(id='567890abc9b0307bc0414164')\n\n# send PATCH request to SB API, same as changing any other field\ntask.save()\n\nprint(task.inputs)"
        samples-languages:
        - python
      tags:
      - Tasks
    servers:
    - url: https://api.sbgenomics.com/v2
  /tasks/{task_id}/actions/abort:
    post:
      summary: Abort a task
      description: This call aborts the specified task. Only tasks whose status is `"RUNNING"` or `"QUEUED"` may be aborted.
      operationId: abort-a-task
      parameters:
      - name: X-SBG-Auth-Token
        in: header
        description: Your Seven Bridges Platform [authentication token](doc:get-your-authentication-token).
        required: true
        schema:
          type: string
      - name: task_id
        in: path
        description: The ID of the task you are acting on.
        schema:
          type: string
        required: true
      - name: fields
        in: query
        description: Selector specifying a subset of fields to include in the response.
        schema:
          type: array
          items:
            type: string
      responses:
        '200':
          description: '200'
          content:
            application/json:
              examples:
                Result:
                  value: "{\n  \"href\": \"https://api.sbgenomics.com/v2/tasks/bd5e95d9-12b3-789c-45b6-34d8696571a9\",\n  \"id\": \"bd5e95d9-12b3-789c-45b6-34d8696571a9\",\n  \"name\": \"Workflow run - 11-15-15 15:56:11\",\n  \"status\": \"Active\",\n  \"project\": \"RFranklin/my-project\",\n  \"use_interruptible_instances\": false,\n  \"app\": \"RFranklin/my-project/workflow/1\",\n  \"created_by\": \"RFranklin\",\n  \"executed_by\": \"Kate\",\n  \"start_time\": \"2015-11-15T15:56:11Z\",\n  \"inputs\": {\n    \"my_hardcoded_string\": {\n      \"schema\": [\n        \"null\",\n        \"string\"\n      ],\n      \"value\": null,\n      \"errors\": null,\n      \"files\": null,\n      \"missing_files\": null\n    }\n  }\n}"
              schema:
                type: object
                properties:
                  href:
                    type: string
                    example: https://api.sbgenomics.com/v2/tasks/bd5e95d9-12b3-789c-45b6-34d8696571a9
                  id:
                    type: string
                    example: bd5e95d9-12b3-789c-45b6-34d8696571a9
                  name:
                    type: string
                    example: Workflow run - 11-15-15 15:56:11
                  status:
                    type: string
                    example: Active
                  project:
                    type: string
                    example: RFranklin/my-project
                  use_interruptible_instances:
                    type: boolean
                    example: false
                    default: true
                  app:
                    type: string
                    example: RFranklin/my-project/workflow/1
                  created_by:
                    type: string
                    example: RFranklin
                  executed_by:
                    type: string
                    example: Kate
                  start_time:
                    type: string
                    example: '2015-11-15T15:56:11Z'
                  inputs:
                    type: object
                    properties:
                      my_hardcoded_string:
                        type: object
                        properties:
                          schema:
                            type: array
                            items:
                              type: string
                              example: 'null'
                          value: {}
                          errors: {}
                          files: {}
                          missing_files: {}
      deprecated: false
      x-readme:
        code-samples:
        - language: python
          code: "from sevenbridges import Api\n\napi = Api(url='https://api.sbgenomics.com/v2',\n          token='3210a98c1db9318fa9d9273156740f74')\n\ntask = api.tasks.get(id='bd5e95d9-12b3-789c-45b6-34d8696571a9')\n\n# send POST request to SB API\ntask.abort()\n\nprint(task.status)"
        samples-languages:
        - python
      tags:
      - Tasks
    servers:
    - url: https://api.sbgenomics.com/v2
  /tasks:
    post:
      summary: Create a new draft task
      description: 'This call creates a new task. You can create either a single task or a batch task by using the app''s default batching, override batching, or disable batching completely.


        A **parent task** is a task that specifies criteria by which to batch its inputs into a series of further sub-tasks, called **child tasks**.


        See the documentation on [batching tasks](doc:about-batch-analyses) for more details on batching criteria.'
      operationId: create-a-new-task
      parameters:
      - name: fields
        in: query
        description: Selector specifying a subset of fields to include in the response.
        schema:
          type: array
          items:
            type: string
      - name: action
        in: query
        description: If set to "run", the task will be run immediately upon creation.
        schema:
          type: string
      - name: X-SBG-Auth-Token
        in: header
        description: Your Seven Bridges Platform [authentication token](doc:get-your-authentication-token). For security reasons, token will not be automatically populated in the generated code sample. Please replace `<your-token-here>` with your token before executing this call.
        required: true
        schema:
          type: string
      requestBody:
        content:
          application/json:
            schema:
              type: object
              required:
              - project
              - app
              properties:
                project:
                  type: string
                  description: The [short name](the-api#section-project-short-names) of the project that you want to create the task in.
                app:
                  type: string
                  description: The specification of the app that you want to run. Recall that apps are specified by their projects, in the form `{project_owner}/{project}/{app_name}`
                name:
                  type: string
                  description: The name of the task
                description:
                  type: string
                  description: An optional description of the task
                execution_settings:
                  type: object
                  description: Detailed task execution parameters.
                  properties:
                    instance_type:
                      type: string
                      description: 'Possible value is the specific instance type, e.g. `"instance_type": "c4.2xlarge;ebs-gp2;2000"`.'
                    max_parallel_instances:
                      type: integer
                      description: 'Maximum number of instances running at the same time. Takes any integer value equal to or greater than 1, e.g. `"max_parallel_instances": 2`.'
                      format: int32
                    use_memoization:
                      type: boolean
                      description: Set to `false` by default. Set to `true` to enable [memoization](doc:about-memoization).
                    use_elastic_disk:
                      type: boolean
                      description: Set to `true` to enable [Elastic Disk](page:elastic-disk).
                inputs:
                  type: array
                  description: See the section on [specifying task inputs](doc:the-api#section-inputs) for information on creating task input objects.
                  items:
                    properties:
                      '{input_id}':
                        type: object
                        properties:
                          class:
                            type: string
                            description: Input value type. If this is a file, the value is `File`.
                            default: File
                          path:
                            type: string
                            description: File ID for file inputs.
                          name:
                            type: string
                            description: Name of the file for file inputs.
                    type: object
                batch:
                  type: boolean
                  description: This is set to `false` by default. Set to `true` to create a batch task and specify the `batch_input` and `batch-by` criteria as described below.
                batch_input:
                  type: string
                  description: The ID of the input on which you wish to batch. You would typically batch on the input consisting of a list of files. If this parameter is omitted, the default batching criteria defined for the app will be used.
                batch_by:
                  type: object
                  description: 'This specifies the criteria on which to batch. It can be in one of two formats.  1. If you wish to batch per item in the app''s input (i.e., typically per file in a list of files) then specify a dictionary with the following format: `{    "type": "ITEM" }`  2. If you wish to batch by groups of inputs, you should specify the criteria satisfied by each group. This should be a common metadata value in one, or more, metadata fields.  To do this, specify a dictionary with the following format:  `{    "type": "CRITERIA",    "criteria": [         "metadata.<field_1>", "metadata.<field_2>"     ] }` This will group inputs by shared metadata values for `<field_1>` and `<field_2>`, in that order. Arbitrarily many metadata fields may be listed, and the order in which fields are grouped will respect the order of the list.'
                  properties: {}
                use_interruptible_instances:
                  type: string
                  description: This field can be true or false. Set this field to true to allow the use of [spot instances](doc:about-spot-instances).
      responses:
        '200':
          description: '200'
          content:
            application/json:
              examples:
                Result:
                  value: "{\n  \"href\": \"https://api.sbgenomics.com/v2/tasks/bd5e95d9-12b3-789c-45b6-34d8696571a9\",\n  \"id\": \"bd5e95d9-12b3-789c-45b6-34d8696571a9\",\n  \"name\": \"RFranklin, Experiment IV\",\n  \"description\": \"my draft task\",\n  \"status\": \"DRAFT\",\n  \"project\": \"RFranklin/my-project\",\n  \"execution_settings\": {\n            \"instance_type\": \"c4.2xlarge;ebs-gp2;2000\",\n            \"max_parallel_instances\": 1,\n            \"use_memoization\": true\n        },\n  \"use_interruptible_instances\": false,\n  \"app\": \"RFranklin/my-project/new-test-app/0\",\n  \"type\": \"v2\",\n  \"created_by\": \"RFranklin\",\n  \"start_time\": \"2016-01-12T19:20:10Z\",\n  \"inputs\": {\n    \"dispersion_threshold\": null,\n    \"cuffdiff_zip\": {\n      \"class\": \"File\",\n      \"path\": \"567890abc3d8130ea4047731\",\n      \"name\": \"example_human_known_indels.vcf\"\n    },\n    \"density_threshold\": null,\n    \"thresholds_off\": null\n  },\n  \"outputs\": {\n    \"archive\": null,\n    \"html\": null\n  }\n}\n"
              schema:
                type: object
                properties:
                  href:
                    type: string
                    example: https://api.sbgenomics.com/v2/tasks/bd5e95d9-12b3-789c-45b6-34d8696571a9
                  id:
                    type: string
                    example: bd5e95d9-12b3-789c-45b6-34d8696571a9
                  name:
                    type: string
                    example: RFranklin, Experiment IV
                  description:
                    type: string
                    example: my draft task
                  status:
                    type: string
                    example: DRAFT
                  project:
                    type: string
                    example: RFranklin/my-project
                  execution_settings:
                    type: object
                    properties:
                      instance_type:
                        type: string
                        example: c4.2xlarge;ebs-gp2;2000
                      max_parallel_instances:
                        type: integer
                        example: 1
                        default: 0
                      use_memoization:
                        type: boolean
                        example: true
                        default: true
                  use_interruptible_instances:
                    type: boolean
                    example: false
                    default: true
                  app:
                    type: string
                    example: RFranklin/my-project/new-test-app/0
                  type:
                    type: string
                    example: v2
                  created_by:
                    type: string
                    example: RFranklin
                  start_time:
                    type: string
                    example: '2016-01-12T19:20:10Z'
                  inputs:
                    type: object
                    properties:
                      dispersion_threshold: {}
                      cuffdiff_zip:
                        type: object
                        properties:
                          class:
                            type: string
                            example: File
                          path:
                            type: string
                            example: 567890abc3d8130ea4047731
                          name:
                            type: string
                            example: example_human_known_indels.vcf
                      density_threshold: {}
                      thresholds_off: {}
                  outputs:
                    type: object
                    properties:
                      archive: {}
                      html: {}
      deprecated: false
      x-readme:
        code-samples:
        - language: python
          code: "from sevenbridges import Api\n\napi = Api(url='https://api.sbgenomics.com/v2',\n          token='3210a98c1db9318fa9d9273156740f74')\n\n# send POST request to SB API\nnew_task = api.tasks.create(\n    name='RFranklin, Experiment IV',\n    project='RFranklin/my-project',\n    app='RFranklin/my-project/new-test-app',\n    inputs={\n        'cuffdiff_zip': api.files.get('567890abc9b0307bc0414164')\n    },\n    description='my draft task',\n    interruptible=False,\n    execution_settings={\n        \"instance_type\": \"c4.2xlarge;ebs-gp2;2000\",\n        \"max_parallel_instances\": 1\n    }\n)\n\nprint(new_task.name, new_task.status, new_task.id)"
        samples-languages:
        - python
      tags:
      - Tasks
    get:
      summary: List tasks you can access
      description: This call returns a list of tasks that you can access.
      operationId: list-tasks-you-can-access
      parameters:
      - name: X-SBG-Auth-Token
        in: header
        description: Your Seven Bridges Platform [authentication token](doc:get-your-authentication-token). For security reasons, token will not be automatically populated in the generated code sample. Please replace `<your-token-here>` with your token before executing this call.
        required: true
        schema:
          type: string
      - name: fields
        in: query
        description: Selector specifying a subset of fields to include in the response.
        schema:
          type: array
          items:
            type: string
      - name: status
        in: query
        description: 'You can filter the returned tasks by their status. Set the value of `status` to one of the following values: `"QUEUED"` `"DRAFT"` `"RUNNING"` `"COMPLETED"` `"ABORTED"` `"FAILED"`'
        schema:
          type: string
      - name: parent
        in: query
        description: Enter the task ID of the parent task to return all child tasks from that parent.  A **parent task** is a task that specifies criteria by which to batch its inputs into a series of further sub-tasks, called **child tasks**.  See the documentation on [batching tasks](doc:perform-batch-analysis) for more details on how to run tasks in batches.
        schema:
          type: string
      - name: project
        in: query
        description: Enter the project ID of the project you wish to list the tasks from.
        schema:
          type: string
      - name: created_from
        in: query
        description: Enter the starting date for querying tasks created on the specified date and onwards (see below for more information).
        schema:
          type: string
          format: date-time
      - name: created_to
        in: query
        description: Enter the ending date for querying tasks created until the specified date. You can use it in combination with `created_from` to specify a time interval.
        schema:
          type: string
          format: date-time
      - name: started_from
        in: query
        description: Enter the starting date for querying tasks started on the specified date and onwards (see below for more information).
        schema:
          type: string
          format: date-time
      - name: started_to
        in: query
        description: Enter the starting date for querying tasks started until the specified date (see below for more information).
        schema:
          type: string
          format: date-time
      - name: ended_from
        in: query
        description: Enter the starting date for querying tasks that ended on a specified date (see below for more information).
        schema:
          type: string
          format: date-time
      - name: ended_to
        in: query
        description: Enter the ending date for querying tasks that ended until a specified date.
        schema:
          type: string
          format: date-time
      - name: order_by
        in: query
        description: 'Order returned results by the specified field. Allowed values:  - `created_time` - `start_time` - `name` - `end_time` - `created_by`  Sort can be done only by one column. The default value is `created_time`.'
        schema:
          type: string
      - name: order
        in: query
        description: Sort results in ascending or descending order by specifying `asc` or `desc`, respectively. Only taken into account if `order_by` is explicitly specified.  The default value is `asc`.
        schema:
          type: string
      - name: origin_id
        in: query
        description: Enter an automation run ID to list all tasks created from the specified automation run.
        schema:
          type: string
      responses:
        '200':
          description: '200'
          content:
            application/json:
              examples:
                Result:
                  value: "{\n  \"href\": \"https://api.sbgenomics.com/v2/tasks?offset=0&limit=25&project=RFranklin/my-project\",\n  \"items\": [\n    {\n      \"href\": \"https://api.sbgenomics.com/v2/tasks/48f79ccf-12b3-45b6-789c-b1e8d88dabcd\",\n      \"id\": \"48f79ccf-12b3-45b6-789c-b1e8d88dabcd\",\n      \"name\": \"test run - 12-11-15 11:02:03\",\n      \"project\": \"RFranklin/my-project\"\n    },\n    {\n      \"href\": \"https://api.sbgenomics.com/v2/tasks/1fd125fa-789c-45b6-12b3-2a3ab3bedcba\",\n      \"id\": \"1fd125fa-789c-45b6-12b3-2a3ab3bedcba\",\n      \"name\": \"test run - 12-11-15 11:52:45\",\n      \"project\": \"RFranklin/my-project\"\n    }\n  ],\n  \"links\": []\n}"
              schema:
                type: object
                properties:
                  href:
                    type: string
                    example: https://api.sbgenomics.com/v2/tasks?offset=0&limit=25&project=RFranklin/my-project
                  items:
                    type: array
                    items:
                      type: object
                      properties:
                        href:
                          type: string
                          example: https://api.sbgenomics.com/v2/tasks/48f79ccf-12b3-45b6-789c-b1e8d88dabcd
                        id:
                          type: string
                          example: 48f79ccf-12b3-45b6-789c-b1e8d88dabcd
                        name:
                          type: string
                          example: test run - 12-11-15 11:02:03
                        project:
                          type: string
                          example: RFranklin/my-project
                  links:
                    type: array
      deprecated: false
      x-readme:
        code-samples:
        - language: python
          code: "from sevenbridges import Api\n\napi = Api(url='https://api.sbgenomics.com/v2',\n          token='3210a98c1db9318fa9d9273156740f74')\n\n# send GET request to SB API\ntasks = api.tasks.query()\n\nfor task in tasks:\n    print(task.name, task.status, task.id)"
        samples-languages:
        - python
      tags:
      - Tasks
    servers:
    - url: https://api.sbgenomics.com/v2
  /tasks/{task_id}/execution_details:
    get:
      summary: Get task execution details
      description: "This call returns execution details of the specified task. The task is referred to by its ID, which you can obtain by making the [call to list all tasks you can access](ref:list-tasks-you-can-access). \n\nThe call breaks down the information into the task's distinct jobs. A job is a single subprocess carried out in a task.\n\nThe information returned by this call is broadly similar to that which can be found in the [task stats and logs provided on the Platform](doc:review-task-page)."
      operationId: get-task-execution-details
      parameters:
      - name: X-SBG-Auth-Token
        in: header
        description: Your Seven Bridges Platform [authentication token](doc:get-your-authentication-token). For security reasons, token will not be automatically populated in the generated code sample. Please replace `<your-token-here>` with your token before executing this call.
        required: true
        schema:
          type: string
      - name: task_id
        in: path
        description: The ID of the task you are querying.
        schema:
          type: string
        required: true
      - name: fields
        in: query
        description: Selector specifying a subset of fields to include in the response.
        schema:
          type: array
          items:
            type: string
      responses:
        '200':
          description: '200'
          content:
            application/json:
              examples:
                OK:
                  value: "{\n  \"href\": \"https://api.sbgenomics.com/v2/tasks/f0b89de2-45b6-789c-12b3-05b832c576c6/execution_details\",\n  \"start_time\": \"2017-04-20T15:30:11Z\",\n  \"end_time\": \"2017-04-20T15:36:29Z\",\n  \"status\": \"COMPLETED\",\n  \"message\": \"Completed\",\n  \"jobs\": [\n    {\n      \"name\": \"FastQC_1_0_s\",\n      \"start_time\": \"2017-04-20T15:33:41Z\",\n      \"end_time\": \"2017-04-20T15:34:25Z\",\n      \"status\": \"COMPLETED\",\n      \"command_line\": \"fastqc --noextract --outdir . --quiet --threads 4 /sbgenomics/Projects/10e26e13-cf6a-4c44-8f58-b7352187b50e/hg00105.srr711354.fastq\",\n      \"instance\": {\n        \"id\": \"i-054205ac85c9debcf\",\n        \"type\": \"c4.2xlarge\",\n        \"provider\": \"AWS\",\n        \"disk\": {\n          \"size\": 1024,\n          \"unit\": \"GB\",\n          \"type\": \"amazon-gp2\"\n        }\n      },\n      \"logs\": {\n        \"cmd.log\": \"https://api.sbgenomics.com/v2/files/567890abc9b0307bc0414164/download_info\",\n        \"job.err.log\": \"https://api.sbgenomics.com/v2/files/567890abc1e5339df0414123/download_info\",\n        \"job.tree.log\": \"https://api.sbgenomics.com/v2/files/567890abc4f3066bc3750174/download_info\",\n        \"stderr\": \"https://api.sbgenomics.com/v2/files/567890abc8a5639cc6722063/download_info\"\n      },\n      \"docker\": {\n        \"checksum\": \"sha256:642f70b2d64dffa562e4aea95aa0850a69ab8b09922b56b0b92e40a741cddd29\"\n      }\n    },\n    {\n      \"name\": \"SBG_Html2b64_1_0_s\",\n      \"start_time\": \"2017-04-20T15:35:54Z\",\n      \"end_time\": \"2017-04-20T15:36:27Z\",\n      \"status\": \"COMPLETED\",\n      \"command_line\": \"python /opt/sbg_html_to_b64.py --input /sbgenomics/Projects/10e26e13-cf6a-4c44-8f58-b7352187b50e/workspace/48ed6043-d531-42be-afb1-d2d5bbae6ca3/fastqc-analysis_FastQC_1_0_s/hg00105.srr711354_fastqc.zip\",\n      \"instance\": {\n        \"id\": \"i-054205ac85a0debcf\",\n        \"type\": \"c4.2xlarge\",\n        \"provider\": \"AWS\",\n        \"disk\": {\n          \"size\": 1024,\n          \"unit\": \"GB\",\n          \"type\": \"amazon-gp2\"\n        }\n      },\n      \"logs\": {\n        \"cmd.log\": \"https://api.sbgenomics.com/v2/files/567894d13d947a1eecc6d563/download_info\",\n        \"job.err.log\": \"https://api.sbgenomics.com/v2/files/567894a81c947a1eecc6d56d/download_info\",\n        \"job.tree.log\": \"https://api.sbgenomics.com/v2/files/567890abc3d8130ea4047731/download_info\",\n        \"stderr\": \"https://api.sbgenomics.com/v2/files/567890abc8a5136ec6127063/download_info\"\n      },\n      \"docker\": {\n        \"checksum\": \"sha256:0a7b35a10596c43f6b2345e511692e09e6c3fbc3870c106b18bc4dac3bb21ea8\"\n      }\n    }\n  ]\n}"
              schema:
                type: object
                properties:
                  href:
                    type: string
                    example: https://api.sbgenomics.com/v2/tasks/f0b89de2-45b6-789c-12b3-05b832c576c6/execution_details
                  start_time:
                    type: string
                    example: '2017-04-20T15:30:11Z'
                  end_time:
                    type: string
                    example: '2017-04-20T15:36:29Z'
                  status:
                    type: string
                    example: COMPLETED
                  message:
                    type: string
                    example: Completed
                  jobs:
                    type: array
                    items:
                      type: object
                      properties:
                        name:
                          type: string
                          example: FastQC_1_0_s
                        start_time:
                          type: string
                          example: '2017-04-20T15:33:41Z'
                        end_time:
                          type: string
                          example: '2017-04-20T15:34:25Z'
                        status:
                          type: string
                          example: COMPLETED
                        command_line:
                          type: string
                          example: fastqc --noextract --outdir . --quiet --threads 4 /sbgenomics/Projects/10e26e13-cf6a-4c44-8f58-b7352187b50e/hg00105.srr711354.fastq
                        instance:
                          type: object
                          properties:
                            id:
                              type: string
                              example: i-054205ac85c9debcf
                            type:
                              type: string
                              example: c4.2xlarge
                            provider:
                              type: string
                              example: AWS
                            disk:
                              type: object
                              properties:
                                size:
                                  type: integer
                                  example: 1024
                                  default: 0
                                unit:
                                  type: string
                                  example: GB
                                type:
                                  type: string
                                  example: amazon-gp2
                        logs:
                          type: object
                          properties:
                            cmd.log:
                              type: string
                              example: https://api.sbgenomics.com/v2/files/567890abc9b0307bc0414164/download_info
                            job.err.log:
                              type: string
                              example: https://api.sbgenomics.com/v2/files/567890abc1e5339df0414123/download_info
                            job.tree.log:
                              type: string
                              example: https://api.sbgenomics.com/v2/files/567890abc4f3066bc3750174/download_info
                            stderr:
                              type: string
                              example: https://api.sbgenomics.com/v2/files/567890abc8a5639cc6722063/download_info
                        docker:
                          type: object
                          properties:
                            checksum:
                              type: string
                              example: sha256:642f70b2d64dffa562e4aea95aa0850a69ab8b09922b56b0b92e40a741cddd29
      deprecated: false
      x-readme:
        code-samples:
        - language: python
          code: "from sevenbridges import Api\n\napi = Api(url='https://api.sbgenomics.com/v2',\n          token='3210a98c1db9318fa9d9273156740f74')\n\ntask = api.tasks.get(id='f0b89de2-45b6-789c-12b3-05b832c576c6')\n\n# send GET request to SB API\nexecution_details = task.get_execution_details()\n\nprint(execution_details.status, execution_details.message)\nfor job in execution_details.jobs:\n    print(job.name, job.start_time, job.end_time)"
        samples-languages:
        - python
      tags:
      - Tasks
    servers:
    - url: https://api.sbgenomics.com/v2
  /tasks/{task_id}/actions/run:
    post:
      summary: Run a task
      description: This call runs (executes) the specified task. Only tasks whose status is `"DRAFT"` can be run.
      operationId: perform-an-action-on-a-specific-task
      parameters:
      - name: X-SBG-Auth-Token
        in: header
        description: Your Seven Bridges Platform [authentication token](doc:get-your-authentication-token). For security reasons, token will not be automatically populated in the generated code sample. Please replace `<your-token-here>` with your token before executing this call.
        required: true
        schema:
          type: string
      - name: fields
        in: query
        description: Selector specifying a subset of fields to include in the response.
        schema:
          type: array
          items:
            type: string
      - name: task_id
        in: path
        description: The ID of the task you want to run.
        schema:
          type: string
        required: true
      - name: batch
        in: query
        description: Set this to `false` to disable the default batching for this task.  Running a batch task is a recommended way to run multiple tasks considering the API rate limit ([learn more](doc:api-rate-limit)).
        schema:
          type: boolean
      - name: use_interruptible_instances
        in: query
        description: This field can be `true` or `false`.  Set this field to `true` to allow the use of [spot instances](doc:about-spot-instances).
        schema:
          type: boolean
      - name: Content-Type
        in: header
        required: true
        schema:
          type: string
          default: application/json
      responses:
        '200':
          description: '200'
          content:
            application/json:
              examples:
                Result:
                  value: "{\n  \"href\": \"https://api.sbgenomics.com/v2/tasks/48f79ccf-12b3-45b6-789c-b1e8d88dabcd\",\n  \"id\": \"48f79ccf-12b3-45b6-789c-b1e8d88dabcd\",\n  \"name\": \"new name for my task\",\n  \"description\": \"re-describing the task\",\n  \"status\": \"RUNNING\",\n  \"project\": \"RFranklin/my-project\",\n  \"use_interruptible_instances\": false,\n  \"app\": \"RFranklin/my-project/new/0\",\n  \"type\": \"v2\",\n  \"created_by\": \"RFranklin\",\n  \"executed_by\": \"RFranklin\",\n  \"start_time\": \"2016-01-12T18:39:30Z\",\n  \"execution_status\": {\n    \"message\": \"Initializing...\"\n  },\n  \"inputs\": {\n    \"dispersion_threshold\": null,\n    \"cuffdiff_zip\": {\n      \"class\": \"File\",\n      \"path\": \"567890abc9b0307bc0414164\",\n      \"name\": \"example_human_known_indels.vcf\"\n    },\n    \"density_threshold\": null,\n    \"thresholds_off\": null\n  },\n  \"outputs\": {\n    \"archive\": null,\n    \"html\": null\n  }\n}"
              schema:
                type: object
                properties:
                  href:
                    type: string
                    example: https://api.sbgenomics.com/v2/tasks/48f79ccf-12b3-45b6-789c-b1e8d88dabcd
                  id:
                    type: string
                    example: 48f79ccf-12b3-45b6-789c-b1e8d88dabcd
                  name:
                    type: string
                    example: new name for my task
                  description:
                    type: string
                    example: re-describing the task
                  status:
                    type: string
                    example: RUNNING
                  project:
                    type: string
                    example: RFranklin/my-project
                  use_interruptible_instances:
                    type: boolean
                    example: false
                    default: true
                  app:
                    type: string
                    example: RFranklin/my-project/new/0
                  type:
                    type: string
                    example: v2
                  created_by:
                    type: string
                    example: RFranklin
                  executed_by:
                    type: string
                    example: RFranklin
                  start_time:
                    type: string
                    example: '2016-01-12T18:39:30Z'
                  execution_status:
                    type: object
                    properties:
                      message:
                        type: string
                        example: Initializing...
                  inputs:
                    type: object
                    properties:
                      dispersion_threshold: {}
                      cuffdiff_zip:
                        type: object
                        properties:
                          class:
                            type: string
                            example: File
                          path:
                            type: string
                            example: 567890abc9b0307bc0414164
                          name:
                            type: string
                            example: example_human_known_indels.vcf
                      density_threshold: {}
                      thresholds_off: {}
                  outputs:
                    type: object
                    properties:
                      archive: {}
                      html: {}
      deprecated: false
      x-readme:
        code-samples:
        - language: python
          code: "from sevenbridges import Api\n\napi = Api(url='https://api.sbgenomics.com/v2',\n          token='3210a98c1db9318fa9d9273156740f74')\n\ntask = api.tasks.get(id='48f79ccf-12b3-45b6-789c-b1e8d88dabcd')\n\n# send POST request to SB API\ntask.run()\n\nprint(task.status)"
        samples-languages:
        - python
      tags:
      - Tasks
    servers:
    - url: https://api.sbgenomics.com/v2
  /tasks/{task_id}/actions/clone:
    post:
      summary: Rerun a task
      description: This call reruns (executes) the specified task.  Once rerun, the task can either be in draft mode or immediately ran, using the Action query parameter (see below).
      operationId: rerun-a-task
      parameters:
      - name: X-SBG-Auth-Token
        in: header
        description: Your Seven Bridges Platform [authentication token](doc:get-your-authentication-token). For security reasons, token will not be automatically populated in the generated code sample. Please replace `<your-token-here>` with your token before executing this call.
        required: true
        schema:
          type: string
      - name: action
        in: query
        description: Set this to `run` in order to create a draft task and execute it immediately.
        schema:
          type: string
      - name: task_id
        in: path
        description: The ID of the task you are rerunning.
        schema:
          type: string
        required: true
      responses:
        '200':
          description: '200'
          content:
            application/json:
              examples:
                Result:
                  value: "{\n    \"href\": \"https://api.sbgenomics.com/v2/tasks/67f68072-45b6-12b3-789c-37be8b0f2f04\",\n    \"id\": \"67f68072-45b6-12b3-789c-37be8b0f2f04\",\n    \"name\": \"VarsScan2 WF from BAM test\",\n    \"status\": \"DRAFT\",\n    \"project\": \"rfranklin/rfranklin-demo-project\",\n    \"app\": \"rfranklin/rfranklin-demo-project/varscan2-workflow-from-bam-v2-3/0\",\n    \"type\": \"v2\",\n    \"created_by\": \"rfranklin\",\n    \"start_time\": \"2018-07-03T14:24:10Z\",\n    \"batch\": false,\n    \"use_interruptible_instances\": false,\n    \"errors\": [],\n    \"warnings\": [],\n    \"inputs\": {\n        \"input_fasta_file\": {\n            \"path\": \"567890abc9b0307bc0414164\",\n            \"class\": \"File\"\n        },\n        \"Normal_BAM\": {\n            \"path\": \"567890abc1e5339df0414123\",\n            \"class\": \"File\"\n        },\n        \"Tumor_BAM\": {\n            \"path\": \"567890abc4f3066bc3750174\",\n            \"class\": \"File\"\n        }\n    },\n    \"outputs\": {\n        \"High_Confidence_INDELs\": {},\n        \"empty_contigs\": {},\n        \"High_Confidence_SNPs\": {}\n    },\n    \"created_time\": \"2018-07-03T14:24:10Z\"\n}"
              schema:
                type: object
                properties:
                  href:
                    type: string
                    example: https://api.sbgenomics.com/v2/tasks/67f68072-45b6-12b3-789c-37be8b0f2f04
                  id:
                    type: string
                    example: 67f68072-45b6-12b3-789c-37be8b0f2f04
                  name:
                    type: string
                    example: VarsScan2 WF from BAM test
                  status:
                    type: string
                    example: DRAFT
                  project:
                    type: string
                    example: rfranklin/rfranklin-demo-project
                  app:
                    type: string
                    example: rfranklin/rfranklin-demo-project/varscan2-workflow-from-bam-v2-3/0
                  type:
                    type: string
                    example: v2
                  created_by:
                    type: string
                    example: rfranklin
                  start_time:
                    type: string
                    example: '2018-07-03T14:24:10Z'
                  batch:
                    type: boolean
                    example: false
                    default: true
                  use_interruptible_instances:
                    type: boolean
                    example: false
                    default: true
                  errors:
                    type: array
                  warnings:
                    type: array
                  inputs:
                    type: object
                    properties:
                      input_fasta_file:
                        type: object
                        properties:
                          path:
                            type: string
                            example: 567890abc9b0307bc0414164
                          class:
                            type: string
                            example: File
                      Normal_BAM:
                        type: object
                        properties:
                          path:
                            type: string
                            example: 567890abc1e5339df0414123
                          class:
                            type: string
                            example: File
                      Tumor_BAM:
                        type: object
                        properties:
                          path:
                            type: string
                            example: 567890abc4f3066bc3750174
                          class:
                            type: string
                            example: File
                  outputs:
                    type: object
                    properties:
                      High_Confidence_INDELs:
                        type: object
                        properties: {}
                      empty_contigs:
                        type: object
                        properties: {}
                      High_Confidence_SNPs:
                        type: object
                        properties: {}
                  created_time:
                    type: string
                    example: '2018-07-03T14:24:10Z'
      deprecated: false
      x-readme:
        code-samples:
        - language: python
          code: "from sevenbridges import Api\n\napi = Api(url='https://api.sbgenomics.com/v2',\n          token='3210a98c1db9318fa9d9273156740f74')\n\ntask = api.tasks.get(id='f0b89de2-45b6-789c-12b3-05b832c576c6')\n\n# send POST request to SB API\nnew_task = task.clone()\n\nprint(new_task.name, new_task.status, new_task.id)"
        samples-languages:
        - python
      tags:
      - Tasks
    servers:
    - url: https://api.sbgenomics.com/v2
x-refined-from:
- seven-bridges-cgc-openapi.json
- seven-bridges-platform-openapi.json
x-readme:
  headers: []
x-readme-fauxas: true