naftiko: 1.0.0-alpha2
info:
  label: Thermo Fisher SampleManager LIMS REST API — Samples
  description: 'Thermo Fisher SampleManager LIMS REST API — Samples. 2 operations. Lead operation: Get Samples. Self-contained
    Naftiko capability covering one Thermo Fisher Scientific business surface.'
  tags:
  - Thermo Fisher Scientific
  - Samples
  created: '2026-05-19'
  modified: '2026-05-19'
binds:
- namespace: env
  keys:
    THERMO_FISHER_SCIENTIFIC_API_KEY: THERMO_FISHER_SCIENTIFIC_API_KEY
capability:
  consumes:
  - type: http
    namespace: thermo-fisher-samplemanager-samples
    baseUri: https://{server}:{port}/smpwcfrestvgsm
    description: Thermo Fisher SampleManager LIMS REST API — Samples business capability. Self-contained, no shared references.
    resources:
    - name: mobile-samples
      path: /mobile/samples
      operations:
      - name: getsamples
        method: GET
        description: Get Samples
        outputRawFormat: json
        outputParameters:
        - name: result
          type: object
          value: $.
        inputParameters:
        - name: status
          in: query
          type: string
          description: Sample status filter (A=Authorized, C=Completed, X=Cancelled, L=Login pending).
        - name: from_date
          in: query
          type: string
          description: Filter samples from this date (YYYY-MM-DD).
        - name: to_date
          in: query
          type: string
          description: Filter samples to this date (YYYY-MM-DD).
        - name: pagesize
          in: query
          type: integer
          description: Number of records per page.
        - name: page
          in: query
          type: integer
          description: Page number.
    - name: mobile-samples-sampleId
      path: /mobile/samples/{sampleId}
      operations:
      - name: getsamplebyid
        method: GET
        description: Get Sample By ID
        outputRawFormat: json
        outputParameters:
        - name: result
          type: object
          value: $.
        inputParameters:
        - name: sampleId
          in: path
          type: string
          description: The sample identity/barcode.
          required: true
    authentication:
      type: bearer
      token: '{{env.THERMO_FISHER_SCIENTIFIC_API_KEY}}'
  exposes:
  - type: rest
    namespace: thermo-fisher-samplemanager-samples-rest
    port: 8080
    description: REST adapter for Thermo Fisher SampleManager LIMS REST API — Samples. One Spectral-compliant resource per
      consumed operation, prefixed with /v1.
    resources:
    - path: /v1/mobile/samples
      name: mobile-samples
      description: REST surface for mobile-samples.
      operations:
      - method: GET
        name: getsamples
        description: Get Samples
        call: thermo-fisher-samplemanager-samples.getsamples
        with:
          status: rest.status
          from_date: rest.from_date
          to_date: rest.to_date
          pagesize: rest.pagesize
          page: rest.page
        outputParameters:
        - type: object
          mapping: $.
    - path: /v1/mobile/samples/{sampleid}
      name: mobile-samples-sampleid
      description: REST surface for mobile-samples-sampleId.
      operations:
      - method: GET
        name: getsamplebyid
        description: Get Sample By ID
        call: thermo-fisher-samplemanager-samples.getsamplebyid
        with:
          sampleId: rest.sampleId
        outputParameters:
        - type: object
          mapping: $.
  - type: mcp
    namespace: thermo-fisher-samplemanager-samples-mcp
    port: 9090
    transport: http
    description: MCP adapter for Thermo Fisher SampleManager LIMS REST API — Samples. One tool per consumed operation, routed
      inline through this capability's consumes block.
    tools:
    - name: get-samples
      description: Get Samples
      hints:
        readOnly: true
        destructive: false
        idempotent: true
      call: thermo-fisher-samplemanager-samples.getsamples
      with:
        status: tools.status
        from_date: tools.from_date
        to_date: tools.to_date
        pagesize: tools.pagesize
        page: tools.page
      outputParameters:
      - type: object
        mapping: $.
    - name: get-sample-id
      description: Get Sample By ID
      hints:
        readOnly: true
        destructive: false
        idempotent: true
      call: thermo-fisher-samplemanager-samples.getsamplebyid
      with:
        sampleId: tools.sampleId
      outputParameters:
      - type: object
        mapping: $.