openapi: 3.1.0
info:
  title: Vital Lab Report Parser Aggregate compendium API
  description: Submit existing lab-result PDFs to be parsed and normalized into structured biomarker results. Create lab-report parser jobs and poll for job status and parsed results.
  version: 0.4.497
  contact:
    name: Junction (Vital) Support
    url: https://docs.junction.com
servers:
- url: https://api.us.junction.com
  x-fern-server-name: Production
- url: https://api.eu.junction.com
  x-fern-server-name: ProductionEU
- url: https://api.sandbox.us.junction.com
  x-fern-server-name: Sandbox
- url: https://api.sandbox.eu.junction.com
  x-fern-server-name: SandboxEU
security:
- apiKeyAuth: []
tags:
- name: compendium
paths:
  /v3/compendium/search:
    post:
      tags:
      - compendium
      summary: Search Compendium
      operationId: search_compendium_v3_compendium_search_post
      requestBody:
        content:
          application/json:
            schema:
              $ref: '#/components/schemas/SearchCompendiumBody'
        required: true
      responses:
        '200':
          description: Successful Response
          content:
            application/json:
              schema:
                $ref: '#/components/schemas/SearchCompendiumResponse'
        '422':
          description: Validation Error
          content:
            application/json:
              schema:
                $ref: '#/components/schemas/HTTPValidationError'
      x-fern-sdk-group-name: compendium
      x-fern-sdk-method-name: search
  /v3/compendium/convert:
    post:
      tags:
      - compendium
      summary: Convert Compendium
      operationId: convert_compendium_v3_compendium_convert_post
      requestBody:
        content:
          application/json:
            schema:
              $ref: '#/components/schemas/ConvertCompendiumBody'
        required: true
      responses:
        '200':
          description: Successful Response
          content:
            application/json:
              schema:
                $ref: '#/components/schemas/ConvertCompendiumResponse'
        '422':
          description: Validation Error
          content:
            application/json:
              schema:
                $ref: '#/components/schemas/HTTPValidationError'
      x-fern-sdk-group-name: compendium
      x-fern-sdk-method-name: convert
components:
  schemas:
    HTTPValidationError:
      properties:
        detail:
          title: Detail
      type: object
      title: HTTPValidationError
    SearchMode:
      type: string
      enum:
      - canonical
      - crosswalk
      title: SearchMode
      description: ℹ️ This enum is non-exhaustive.
    ConvertCompendiumBody:
      properties:
        lab_test_id:
          anyOf:
          - type: string
            format: uuid
          - type: 'null'
          title: Lab Test Id
        provider_ids:
          anyOf:
          - items:
              type: string
            type: array
          - type: 'null'
          title: Provider Ids
        target_lab:
          $ref: '#/components/schemas/CompendiumSearchLabs'
          description: ℹ️ This enum is non-exhaustive.
        limit:
          type: integer
          title: Limit
          default: 3
      type: object
      required:
      - target_lab
      title: ConvertCompendiumBody
    PerLabCandidate:
      properties:
        marker_id:
          type: integer
          title: Marker Id
        lab_id:
          type: integer
          title: Lab Id
        lab_slug:
          anyOf:
          - type: string
          - type: 'null'
          title: Lab Slug
        name:
          type: string
          title: Name
        result_names:
          items:
            type: string
          type: array
          title: Result Names
        provider_id:
          anyOf:
          - type: string
          - type: 'null'
          title: Provider Id
        loinc_set_hash:
          type: string
          title: Loinc Set Hash
        loinc_codes:
          items:
            type: string
          type: array
          title: Loinc Codes
        loinc_components:
          items:
            type: string
          type: array
          title: Loinc Components
        loinc_groups:
          items:
            type: string
          type: array
          title: Loinc Groups
        cpt_codes:
          items:
            type: string
          type: array
          title: Cpt Codes
        relation:
          type: string
          title: Relation
        confidence:
          type: number
          title: Confidence
        reason_codes:
          items:
            type: string
          type: array
          title: Reason Codes
        marker_popularity_score:
          type: number
          title: Marker Popularity Score
      type: object
      required:
      - marker_id
      - lab_id
      - name
      - loinc_set_hash
      - relation
      - confidence
      - marker_popularity_score
      title: PerLabCandidate
    CompendiumSearchLabs:
      type: string
      enum:
      - labcorp
      - quest
      - bioreference
      - sonora_quest
      title: CompendiumSearchLabs
      description: ℹ️ This enum is non-exhaustive.
    ConvertCompendiumResponse:
      properties:
        source_lab_test_id:
          anyOf:
          - type: string
            format: uuid
          - type: 'null'
          title: Source Lab Test Id
        source_lab_id:
          anyOf:
          - type: integer
          - type: 'null'
          title: Source Lab Id
        target_lab_id:
          type: integer
          title: Target Lab Id
        target_lab_slug:
          type: string
          title: Target Lab Slug
        source_provider_ids:
          items:
            type: string
          type: array
          title: Source Provider Ids
        converted_provider_ids:
          items:
            type: string
          type: array
          title: Converted Provider Ids
        unresolved_provider_ids:
          items:
            type: string
          type: array
          title: Unresolved Provider Ids
        by_source_provider_id:
          additionalProperties:
            $ref: '#/components/schemas/ProviderIdConversionResponse'
          type: object
          title: By Source Provider Id
      type: object
      required:
      - target_lab_id
      - target_lab_slug
      title: ConvertCompendiumResponse
    SearchCompendiumBody:
      properties:
        mode:
          $ref: '#/components/schemas/SearchMode'
          description: ℹ️ This enum is non-exhaustive.
        query:
          anyOf:
          - type: string
          - type: 'null'
          title: Query
        cpt_codes:
          items:
            type: string
          type: array
          title: Cpt Codes
        loinc_set_hash:
          anyOf:
          - type: string
          - type: 'null'
          title: Loinc Set Hash
        labs:
          anyOf:
          - items:
              $ref: '#/components/schemas/CompendiumSearchLabs'
            type: array
          - type: 'null'
          title: Labs
        include_related:
          type: boolean
          title: Include Related
          default: true
        limit:
          type: integer
          title: Limit
          default: 3
      type: object
      required:
      - mode
      title: SearchCompendiumBody
    CanonicalCandidate:
      properties:
        loinc_set_hash:
          type: string
          title: Loinc Set Hash
        display_name:
          type: string
          title: Display Name
        aliases:
          items:
            type: string
          type: array
          title: Aliases
        loinc_codes:
          items:
            type: string
          type: array
          title: Loinc Codes
        provider_ids:
          items:
            type: string
          type: array
          title: Provider Ids
        loinc_components:
          items:
            type: string
          type: array
          title: Loinc Components
        loinc_groups:
          items:
            type: string
          type: array
          title: Loinc Groups
        cpt_codes:
          items:
            type: string
          type: array
          title: Cpt Codes
        popularity_score:
          type: number
          title: Popularity Score
        confidence:
          type: number
          title: Confidence
      type: object
      required:
      - loinc_set_hash
      - display_name
      - popularity_score
      - confidence
      title: CanonicalCandidate
    SearchCompendiumResponse:
      properties:
        mode:
          $ref: '#/components/schemas/SearchMode'
          description: ℹ️ This enum is non-exhaustive.
        selected_canonical:
          anyOf:
          - $ref: '#/components/schemas/CanonicalCandidate'
          - type: 'null'
        canonical_candidates:
          items:
            $ref: '#/components/schemas/CanonicalCandidate'
          type: array
          title: Canonical Candidates
        per_lab:
          additionalProperties:
            items:
              $ref: '#/components/schemas/PerLabCandidate'
            type: array
          type: object
          title: Per Lab
        related:
          items:
            $ref: '#/components/schemas/RelatedCandidate'
          type: array
          title: Related
      type: object
      required:
      - mode
      title: SearchCompendiumResponse
    ProviderIdConversionResponse:
      properties:
        source_provider_id:
          type: string
          title: Source Provider Id
        candidates:
          items:
            $ref: '#/components/schemas/PerLabCandidate'
          type: array
          title: Candidates
      type: object
      required:
      - source_provider_id
      title: ProviderIdConversionResponse
    RelatedCandidate:
      properties:
        canonical:
          $ref: '#/components/schemas/CanonicalCandidate'
        relation:
          type: string
          title: Relation
        confidence:
          type: number
          title: Confidence
        reason_codes:
          items:
            type: string
          type: array
          title: Reason Codes
      type: object
      required:
      - canonical
      - relation
      - confidence
      title: RelatedCandidate
  securitySchemes:
    apiKeyAuth:
      type: apiKey
      in: header
      name: x-vital-api-key
      description: Vital Team API Key