#!/usr/bin/env bash # Runs all Python examples set -Eeuox pipefail if [[ "$#" -gt 1 ]]; then echo "usage: run_python_examples.sh " exit 1 fi PREFIX=${1:-} $PREFIX python3 -m pip install -r python/example/example_requirements.txt -U runpyex () { echo "=== Executing $1 ======================================" $PREFIX python3 python/example/$* echo "### Example $1: OK." } runpyex brunel.py -n 400 -m 100 -e 20 -p 0.1 -w 1.2 -d 1 -g 0.5 -l 5 -t 100 -s 1 -G 50 -S 123 # runpyex dynamic-catalogue.py # depends on running a-b-c first, see run_external_tests.sh runpyex gap_junctions.py runpyex single_cell_cable.py runpyex single_cell_detailed_recipe.py python/example/single_cell_detailed.swc runpyex single_cell_detailed.py python/example/single_cell_detailed.swc runpyex probe_lfpykit.py python/example/single_cell_detailed.swc runpyex single_cell_model.py runpyex single_cell_nml.py python/example/morph.nml runpyex single_cell_recipe.py runpyex single_cell_stdp.py runpyex single_cell_swc.py python/example/single_cell_detailed.swc runpyex network_ring.py # runpyex network_ring_mpi.py # requires MPI # runpyex network_ring_mpi_plot.py # no need to test runpyex network_ring_gpu.py # by default, gpu_id=None runpyex network_two_cells_gap_junctions.py runpyex diffusion.py runpyex plasticity.py runpyex v-clamp.py runpyex calcium_stdp.py