cff-version: 1.2.0
message: "If you use breseq in your research, please cite the preferred-citation below."
title: breseq
version: 0.50.0
license: GPL-2.0-or-later
repository-code: "https://github.com/barricklab/breseq"
url: "http://barricklab.org/breseq"
authors:
  - given-names: Jeffrey E.
    family-names: Barrick
  - given-names: Jordan
    family-names: Borges
  - given-names: Geoffrey
    family-names: Colburn
  - given-names: Daniel
    family-names: Deatherage
  - given-names: Alex
    family-names: Hu
  - given-names: David
    family-names: Knoester
  - given-names: Austin
    family-names: Meyer
preferred-citation:
  type: article
  title: "Identification of mutations in laboratory-evolved microbes from next-generation sequencing data using breseq"
  authors:
    - given-names: Daniel E.
      family-names: Deatherage
    - given-names: Jeffrey E.
      family-names: Barrick
  journal: "Methods in Molecular Biology"
  volume: 1151
  start: 165
  end: 188
  year: 2014
references:
  - type: article
    title: "Identifying structural variation in haploid microbial genomes from short-read resequencing data using breseq"
    authors:
      - given-names: Jeffrey E.
        family-names: Barrick
      - given-names: Geoffrey
        family-names: Colburn
      - given-names: Daniel E.
        family-names: Deatherage
      - given-names: C. Conover
        family-names: Traverse
      - given-names: Matthew D.
        family-names: Strand
      - given-names: Jordan J.
        family-names: Borges
      - given-names: David B.
        family-names: Knoester
      - given-names: Aaron
        family-names: Reba
      - given-names: Austin G.
        family-names: Meyer
    journal: "BMC Genomics"
    volume: 15
    start: 1039
    year: 2014