--- # template # - number: # title: # display: # google_doc: # pull_request: # html_preview: # leads: # # MUST match given-names and family-names from the bids specification citation.cff # - given-names: ' ' # family-names: ' ' # bids_maintainers: # - given-names: ' ' # family-names: ' ' # status: # blocking: # communication_channel: # pull_request_created: # pull_request_merged: - number: '004' title: Susceptibility Weighted Imaging google_doc: https://docs.google.com/document/d/1kyw9mGgacNqeMbp4xZet3RnDhcMmf4_BmRgKaOkO2Sc/ content: - raw leads: - given-names: ' ' family-names: ' ' bids_maintainers: status: blocking: - Looking for a new leader. google_doc_created: 2017-04 pull_request_created: pull_request_merged: - number: '011' title: Structural preprocessing derivatives google_doc: https://docs.google.com/document/d/1YG2g4UkEio4t_STIBOqYOwneLEs1emHIXbGKynx7V0Y/ pull_request: https://github.com/bids-standard/bids-specification/pull/518 html_preview: https://bids-specification--518.org.readthedocs.build/en/518/05-derivatives/04-structural-derivatives.html content: - derivative leads: - given-names: Viviana family-names: Siless bids_maintainers: - given-names: Christopher J. family-names: Markiewicz status: - Stability! (We haven't touched it in a bit.) blocking: - Staleness! (We haven't touched it in a bit.) - Mostly just need to regroup with other BEPs and make sure we're being consistent. google_doc_created: 2017-08 pull_request_created: 2020-06 pull_request_merged: - number: '012' title: Functional preprocessing derivatives google_doc: pull_request: https://github.com/bids-standard/bids-specification/pull/519 html_preview: https://bids-specification--519.org.readthedocs.build/en/519/derivatives/functional-derivatives.html content: - derivative leads: - given-names: Christopher J. family-names: Markiewicz bids_maintainers: - given-names: Christopher J. family-names: Markiewicz status: - Moderate reworking, post-BEP23 meeting. "boldmap" suffix. - Schema implemented; waiting on full schema validation to merge. blocking: - Overlap with BEP 39 (decompositions). - Probably just needs dropping from BEP 12, but need to make sure BEP 39 meets the needs served there. google_doc_created: 2018-10 pull_request_created: 2020-06 pull_request_merged: - number: '014' title: Affine transformations and nonlinear field warps google_doc: https://docs.google.com/document/d/11gCzXOPUbYyuQx8fErtMO9tnOKC3kTWiL9axWkkILNE/ content: - derivative leads: - given-names: Oscar family-names: Esteban bids_maintainers: - given-names: Christopher J. family-names: Markiewicz status: - After the kick-off meeting (2019), progress locked on developing a prototype of a new HDF5-based format (X5) - Minor bug fixes and features to support more transforms - 'Perspectives: The current draft seems sufficient for storing transforms' - 'Perspectives: X5 has high promises to enable effortless spatial transforms' blocking: - Bandwidth to finalize development - 'Current blockers: surface transforms & X5 storing' google_doc_created: 2017-08 pull_request_created: pull_request_merged: - number: '016' title: Diffusion weighted imaging derivatives pull_request: https://github.com/bids-standard/bids-specification/pull/2211 content: - derivative leads: - given-names: Franco family-names: Pestilli - given-names: Oscar family-names: Esteban bids_maintainers: status: - adapted general spatial derivatives proposal, meaning using map, like `dwimap` - decided on using `params-` to denote different file types, for example `param-md` or `param-fa` - updated meta-data blocking: google_doc_created: pull_request_created: pull_request_merged: - number: '017' title: Generic BIDS connectivity data schema display: Connectivity schema google_doc: https://docs.google.com/document/d/1ugBdUF6dhElXdj3u9vw0iWjE6f_Bibsro3ah7sRV0GA/ content: - derivative leads: - given-names: Eugene P. family-names: Duff bids_maintainers: status: - specified different formats for dense and sparse matrices - 'proposed arrays in h5 or zarr to cover multi-dimensional matrices (for example: dynamic connectivity)' blocking: google_doc_created: 2017-05 pull_request_created: pull_request_merged: - number: '021' title: Common Electrophysiological Derivatives google_doc: https://docs.google.com/document/d/1PmcVs7vg7Th-cGC-UrX8rAhKUHIzOI-uIOh69_mvdlw/ content: - derivative leads: - given-names: Arnaud family-names: Delorme - given-names: Dora family-names: Hermes - given-names: Mainak family-names: Jas - given-names: Guiomar family-names: Niso - given-names: Robert family-names: Oostenveld - given-names: Cyril family-names: Pernet - given-names: Christine family-names: Rogers status: - 'Focus on raw-ish data: channels by time: epoching, filtering, interpolation...' - 'All provenance tracking: outsourced to BEP028 (“provenance”)' - Reusing existing (raw) data formats where applicable - 'No additional entities or suffixes: focus on “desc” entity' - Create new “descriptions.tsv” file to accompany and document the “desc” entity - Working on examples on GitHub - 'Perspectives: Derivatives beyond channels by time data will be discussed at a later point' blocking: google_doc_created: 2018-05 pull_request_created: pull_request_merged: - number: '023' title: PET Preprocessing derivatives google_doc: https://docs.google.com/document/d/1yzsd1J9GT-aA0DWhdlgNr5LCu6_gvbjLyfvYq2FuxlY/ content: - derivative leads: - given-names: Martin family-names: Noergaard - given-names: Graham family-names: Searle - given-names: Melanie family-names: Ganz-Benjaminsen bids_maintainers: - given-names: Anthony family-names: Galassi status: - Defined all the necessary components to be included in the specification - Alignment with other modalities obtained at Copenhagen BIDS derivatives meeting - Example PET derivatives datasets available on github - 'Perspectives: 3rd joint meeting between all PET collaborators in August 2023' - 'Perspectives: Aim is to finish the specification during the fall of 2023' blocking: - Need more example datasets (fore example different tracers) with different preprocessing choices to capture as most of the PET community as possible - Need to finish alignment with other modalities - Still need to agree on the level of information going into corresponding json files google_doc_created: 2018-08 pull_request_created: pull_request_merged: - number: '024' title: Computed Tomography scan google_doc: https://docs.google.com/document/d/1fqnJZ18x5LJC8jiJ8yvPHUGFzNBZ6gW2kywYrUKWtuo/ content: - raw leads: - given-names: Hugo family-names: Boniface bids_maintainers: status: - Lead seeking more contributors and experts. blocking: google_doc_created: 2018-11 pull_request_created: pull_request_merged: - number: '026' title: Microelectrode Recordings google_doc: https://docs.google.com/document/d/14KC1d5-Lx-7ZSMtwS7pVAAvz-2WR_uoo5FvsNirzqJw/ content: - raw leads: - given-names: ' ' family-names: ' ' bids_maintainers: status: - BEP is open to new leadership, see also [BEP032 (animal electrophys)](https://docs.google.com/document/d/1oG-C8T-dWPqfVzL2W8HO3elWK8NIh2cOCPssRGv23n0/) blocking: - Searching for a new leader. google_doc_created: 2018-04 pull_request_created: pull_request_merged: - number: '028' title: Provenance google_doc: https://docs.google.com/document/d/1vw3VNDof5cecv2PkFp7Lw_pNUTUo8-m8V4SIdtGJVKs/ content: - metadata leads: - given-names: Satrajit S. family-names: Ghosh - given-names: Camille family-names: Maumet - given-names: Yaroslav O. family-names: Halchenko bids_maintainers: status: - '[Specification](https://bids.neuroimaging.io/bep028)' - '[Set of examples](https://github.com/bids-standard/BEP028_BIDSprov)' - 'Perspectives: Opening up to BIDS community for feedback' - 'Perspectives: Engaging with software developers (in progress w/ SPM, AFNI)' blocking: google_doc_created: 2018-08 pull_request: https://github.com/bids-standard/bids-specification/pull/2099 pull_request_created: 2025-04 pull_request_merged: - number: '032' title: Microelectrode electrophysiology google_doc: https://docs.google.com/document/d/1oG-C8T-dWPqfVzL2W8HO3elWK8NIh2cOCPssRGv23n0/ pull_request: https://github.com/bids-standard/bids-specification/pull/2307 html_preview: https://bids-specification--2307.org.readthedocs.build/en/2307/modality-specific-files/microelectrode-electrophysiology.html content: - raw leads: - given-names: Sylvain family-names: Takerkart - given-names: Benjamin family-names: Dichter - given-names: Yaroslav O. family-names: Halchenko - given-names: Lyuba family-names: Zehl - given-names: Andrew family-names: Davison bids_maintainers: - given-names: Rémi family-names: Gau status: - Decided on the new name (not just "Animal" but "Microelectrode"), modalities, datatypes - Nearly finalized added metadata - PR compiles green, preview is available - 'Target: finalize & merge PR into the BIDS specs in 2025' blocking: - Need to prepare example datasets - Need to start thinking about derived data (spike sorted) google_doc_created: 2020-12 pull_request_created: 2022-11 pull_request_merged: - number: '033' title: Advanced Diffusion Weighted Imaging google_doc: https://docs.google.com/document/d/1en4ByORlPqwDfZwNOOBTj0GwpYBcS0_2peqreTOvwDU/ content: - raw leads: - given-names: James family-names: Gholam - given-names: Leandro family-names: Beltrachini - given-names: Filip family-names: Szczepankiewicz bids_maintainers: status: - 'New BEP, seeking contributors and collecting community feedback relating to: priority sequences to support, best supported binary structured formats (e.g. CBOR? HDF5? MsgPack?).' - Comments may be submitted directly on the document. - Generating example datasets [here](https://github.com/JAgho/MISP_plot/tree/main) and determining best practice with vendors to record data in-sequence blocking: google_doc_created: 2021-04 pull_request_created: pull_request_merged: - number: '034' title: Computational modeling pull_request: https://github.com/bids-standard/bids-specification/pull/967 html_preview: https://bids-specification--967.org.readthedocs.build/en/967/modality-specific-files/computational-models.html content: - derivative - metadata leads: - given-names: Michael family-names: Schirner - given-names: Petra family-names: Ritter bids_maintainers: status: - sim2bids app created - easier to bring neural simulation data (especially in The Virtual Brain format) into the proposed BIDS Comp Model format - 'Perspectives: A roadmap that coordinates efforts across BEPs would be appreciated.' blocking: - BEPs have overlapping concerns (Comp Models, Spaces and mappings, Generic BIDS connectivity schema, time series, Provenance, Atlases) - need to separate concerns & provide a roadmap for each BEP google_doc_created: 2021-02 pull_request_created: 2021-08 pull_request_merged: - number: '035' title: Modular extensions for individual participant data mega-analyses with non-compliant derivatives display: Mega-analyses google_doc: https://docs.google.com/document/d/1tFRNumQyIgjXBNC3brFDLO9FaikjL84noxK6Om-Ctik/ content: - derivative leads: - given-names: Giuseppe family-names: Gallitto - given-names: Balint family-names: Kincses - given-names: Tamas family-names: Spisak bids_maintainers: - given-names: Rémi family-names: Gau status: - Meta-data harmonization with a term-mapper goes to BEP043 - 'Persperctive: Repeated community review of the simplified proposal' blocking: - Term-mapping is a general feature => complex, modular proposal google_doc_created: 2021-12 pull_request_created: pull_request_merged: - number: '036' title: Phenotypic Data Guidelines google_doc: https://docs.google.com/document/d/1WTkfES8L0vItZVyyR68fc-9cO03jS-kCnMnw6602pbc/ content: - raw leads: - given-names: Eric family-names: Earl - given-names: Samuel family-names: Guay - given-names: Sebastian family-names: Urchs - given-names: Arshitha family-names: Basavaraj bids_maintainers: - given-names: Chris family-names: Markiewicz - given-names: Ross family-names: Blair status: - BEP entering community review period shortly. - BIDS specification PR 2123. - BIDS examples PR 465. blocking: - A successful community review. google_doc_created: 2021-10 pull_request_created: 2025-05 pull_request_merged: - number: '037' title: Non-Invasive Brain Stimulation google_doc: https://docs.google.com/document/d/1drYd7kaNbHTcYPR3T_CRDsPcEbFSV7JbJUmhMPeWMqY/ current_repository: https://github.com/nigelrogasch/nibs-bids/tree/master/nibs-bids-v6/ current_preprint_editable: https://docs.google.com/document/d/1xfetyFkXh8kqObfCViUvku69pk4ZZw8BC5GL8_Cq9TI/edit?tab=t.0 current_preprint: author_list: https://docs.google.com/spreadsheets/d/1oMImk-HXsyLZtTj3yIa1uY9LX3hVpsCiAGZP3oSV0Eo/edit?gid=0#gid=0 content: - raw leads: - given-names: Giacomo family-names: Bertazzoli - given-names: Vittorio family-names: Iacovella - given-names: Peter J. family-names: Fried - given-names: Marta family-names: Bortoletto - given-names: Nigel family-names: Rogasch past leads (inactive): - given-names: Carlo family-names: Miniussi bids_maintainers: - given-names: Rémi family-names: Gau status: - v1.0 2020-11-09 Initial work on specification with vittorio.iacovella@unitn.it carlo.miniussi@unitn.it marta.bortoletto@cognitiveneuroscience.it - v1.0 2021-04 First example of a NIBS-BIDS dataset https://gin.g-node.org/CIMeC/TMS-EEG_brain_connectivity_BIDS - V1.0 2021-11 Brainhack @Donosti with eleonora.marcantoni@cognitiveneuroscience.it martinabulgari3@gmail.com and g.guidali@campus.unimib.it - V1.0 2022-02 First international NIBS-BIDS meeting - V1.0 2022-11 First update of the BEP - V2.0 2023-08 BEP 2.0 available with the new NIBS-BIDS logic for describing NIBS experiments - V3.0 2024-07 BEP 3.0 available with a draft of the final BIDS structure. - V4.0 2024-11 BEP 4.0 updated with a new, more comprehensive structure. Added int files for offline stimulation. Harmonized parameters with SimNIBS. Use of events and scans files for online stimulation. - V4.1 2024-12 BEP 4.1 Comments form December 9th, 2024 5th general meeting implemented, added FAQ section. Met with the BIDS maintenance team in January 2025. Agreed on closing the open discussions, lock the google doc and start the PR. - V6.2 2026-03 BEP 6.2 Comments form December 12th, 2025 6th general meeting implemented. Met with the BIDS steering team in March 2026. Agreed on NSF FAIROS application on NIBS-BIDS implementation https://www.nsf.gov/funding/opportunities/fairos-findable-accessible-interoperable-reusable-open-science. Agreed on creating a preprint version of the BEP037 (to bi cited as a work-in-progress). blocking: google_doc_created: 2022-09 pull_request_created: pull_request_merged: - number: '039' title: Dimensionality reduction-based networks google_doc: https://docs.google.com/document/d/1GTWsj0MFQedXjOaNk6H0or6IDVFyMAysrJ9I4Zmpz2E/ content: - raw leads: - given-names: Arianna family-names: Sala - given-names: Anibal family-names: Sólon - given-names: Cyrus family-names: Eierud - given-names: Franco family-names: Pestilli - given-names: Peer family-names: Herholz bids_maintainers: status: - adapted general spatial derivatives proposal, meaning using `map`, for example `eegmap` and `boldmap` for spatial components - decided on `model-` and `items-` as keys to denote the utilized model and component number, if files are 3D, respectively - updated meta-data and examples blocking: google_doc_created: 2021-10 pull_request_created: pull_request_merged: - number: '040' title: Functional Ultrasound google_doc: https://docs.google.com/document/d/1W3z01mf1E8cfg_OY7ZGqeUeOKv659jCHQBXavtmT-T8/ content: - raw leads: - given-names: Jean-Charles family-names: Mariani - given-names: Samuel family-names: Le Meur-Diebolt - given-names: Thomas family-names: Deffieux bids_maintainers: - given-names: Rémi family-names: Gau status: - All issues raised on the original BEP have been resolved. - Regular meetings with contributors scheduled. - Scanner coordinate system has been proposed to harmonize affine transformations with moving probes. - 'Perspectives: Starting to bidsify existing datasets to stress test the BEP.' - 'Perspectives: timing metadata has been copied from the fMRI-BIDS specification, but evolutions could be discussed to handle non-stable sampling frequencies.' blocking: google_doc_created: 2023-03 pull_request_created: pull_request_merged: - number: '041' title: Statistical Model Derivatives google_doc: https://docs.google.com/document/d/1KHzp-yk8KXvkUIhtN71WU0m4P4kKT9C1yvI-i9_kNeY/ content: - derivative leads: - given-names: Taylor family-names: Salo bids_maintainers: - given-names: Taylor family-names: Salo status: - New BEP, collecting community comments and feedback. - All collaborators are welcome. blocking: google_doc_created: 2022-08 pull_request_created: pull_request_merged: - number: '043' title: BIDS Term Mapping google_doc: https://docs.google.com/document/d/1LACjc5hFXDpa2l_QddBPR41Vce_gglGv9WeuBB7LsBU/ content: - metadata leads: - given-names: Christopher J. family-names: Markiewicz - given-names: Eric A. family-names: Earl bids_maintainers: - given-names: Christopher J. family-names: Markiewicz - given-names: Eric A. family-names: Earl status: - For being able to map non-BIDS data as BIDS-compatible. - Now collecting community comments and feedback. - All collaborators are welcome. blocking: google_doc_created: 2024-03 pull_request_created: pull_request_merged: - number: '044' title: Stimuli pull_request: https://github.com/bids-standard/bids-specification/pull/2022 html_preview: https://bids-specification--2022.org.readthedocs.build/en/2022/modality-specific-files/stimuli.html leads: - given-names: Seyed Yahya family-names: Shirazi - given-names: Dora family-names: Hermes - given-names: Yaroslav O. family-names: Halchenko - given-names: Kay family-names: Robbins - given-names: Scott family-names: Makeig bids_maintainers: - given-names: Rémi family-names: Gau status: - Community comments and feedback are being collected (January 2025) - To harmonize and make more reusable stimuli content under stimuli/ - Collecting community comments and feedback. All collaborators are welcome. - 'Original issue: [#153](https://github.com/bids-standard/bids-specification/issues/153)' content: - raw blocking: google_doc_created: 2023-09 pull_request_created: 2024-12 pull_request_merged: - number: '045' title: Peripheral Physiological Recordings display: Physio pull_request: https://github.com/bids-standard/bids-specification/pull/2267 html_preview: https://bids-specification--2267.org.readthedocs.build/en/2267/modality-specific-files/physiological-recordings.html google_doc: https://docs.google.com/document/d/1oTfjzY5ZnLIYd0kPPWhR81sBmMuy_jC5YYIaqj6OhSA/edit leads: - given-names: Mary family-names: Miedema - given-names: Stefano family-names: Moia - given-names: Sourav family-names: Kulkarni bids_maintainers: - given-names: Seyed Yahya family-names: Shirazi status: - No longer developed in google doc, moved to . - To update standards for physiological data for improved clarity and a broader range of use cases. - Now collecting community comments and feedback. All collaborators are welcome. - 'Original issue: [#1675](https://github.com/bids-standard/bids-specification/issues/1675).' content: - raw blocking: google_doc_created: 2024-08 pull_request_created: 2025-11 pull_request_merged: - number: '046' title: Diffusion Tractography display: Tractography google_doc: https://docs.google.com/document/d/1ubDQ2RhgjnfGqoeukzEkPV9YEHhfYMERrj7-3b0c2HI/edit leads: - given-names: Robert E. family-names: Smith - given-names: Ariel family-names: Rokem - given-names: Franco family-names: Pestilli status: - Porting comprehensive description of streamline tractography mechanisms into specification - 10.1016/B978-0-12-817057-1.00023-8 - Determine appropriate resolution with TRX development - https://tee-ar-ex.github.io/trx-python/ - Decide on scope of BEP; e.g. whether to include tractometry, complex tract delineation content: - derivative blocking: google_doc_created: 2022-02 pull_request_created: pull_request_merged: - number: '047' title: Audio/video recordings for behavioral experiments display: Behavioral audio/video recordings pull_request: https://github.com/bids-standard/bids-specification/pull/2231 html_preview: https://bids-specification--2231.org.readthedocs.build/en/2231/modality-specific-files/behavioral-experiments.html content: - raw leads: - given-names: Benjamin family-names: Dichter bids_maintainers: - given-names: Seyed Yahya family-names: Shirazi status: - Adds support for storing audio and video behavioral recordings (new `_audio` and `_video` suffixes) in the `beh/` directory. blocking: google_doc_created: pull_request_created: 2025-10 pull_request_merged: