:orphan:  .. only available via index, not via toctree

.. title:: Package Recipe 'binette'
.. highlight: bash

binette
=======

.. conda:recipe:: binette
   :replaces_section_title:
   :noindex:

   A fast and accurate binning refinement tool to constructs high quality MAGs from the output of multiple binning tools.

   :homepage: https://github.com/genotoul-bioinfo/binette
   :documentation: https://binette.readthedocs.io
   
   :license: GPL / GPL-3.0-only
   :recipe: /`binette <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/binette>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/binette/meta.yaml>`_
   :links: biotools: :biotools:`binette`, usegalaxy-eu: :usegalaxy-eu:`binette`, doi: :doi:`10.21105/joss.06782`

   


.. conda:package:: binette

   |downloads_binette| |docker_binette|

   :versions:
      
      
      .. raw:: html

         <details><summary><span class="truncated-version-list"><code>1.2.1-0</code>,  <code>1.2.0-0</code>,  <code>1.1.2-0</code>,  <code>1.1.1-0</code>,  <code>1.1.0-0</code>,  <code>1.0.5-1</code>,  <code>1.0.5-0</code>,  <code>1.0.4-0</code>,  <code>1.0.2-0</code>,  </span></summary>
      

      ``1.2.1-0``,  ``1.2.0-0``,  ``1.1.2-0``,  ``1.1.1-0``,  ``1.1.0-0``,  ``1.0.5-1``,  ``1.0.5-0``,  ``1.0.4-0``,  ``1.0.2-0``,  ``1.0.1-0``,  ``1.0.0-1``,  ``1.0.0-0``,  ``0.1.7-0``,  ``0.1.6-0``

      
      .. raw:: html

         </details>
      

   
   :depends checkm2: ``>=1.1,<2.0``
   :depends diamond: ``>=2.1,<3``
   :depends networkx: ``>=3.0,<4.0``
   :depends numpy: ``>=1.24,<3.0``
   :depends pandas: ``>=2,<3``
   :depends pyfastx: ``>=2,<3``
   :depends pyroaring: ``>=1.0.0,<2.0.0``
   :depends pyrodigal: ``>=3.0,<4.0``
   :depends python: 
   :depends rich: ``>=12.0.0,<14.0.0``
   :depends typer: ``>=0.9,<1.0``
   :requirements:

   :additional platforms:
      

   .. rubric:: Installation

  You need a conda-compatible package manager
  (currently either `micromamba <https://mamba.readthedocs.io>`_, `mamba <https://mamba.readthedocs.io>`_, or `conda <https://docs.conda.io/projects/conda>`_)
  and the Bioconda channel already activated (see :ref:`set-up-channels`).

  While any of above package managers is fine, it is currently recommended to use either
  micromamba or mamba (see `here <https://mamba.readthedocs.io>`_ for installation instructions).
  We will show all commands using mamba below, but the arguments are the same for the two
  others.

  Given that you already have a conda environment in which you want to have this package, install with::

      mamba install binette

   and update with::

      mamba update binette

  To create a new environment, run::

      mamba create --name myenvname binette

  with ``myenvname`` being a reasonable name for the environment
  (see e.g. the `mamba docs <https://mamba.readthedocs.io>`_ for details and further options).

  Alternatively, use the docker container::

      docker pull quay.io/biocontainers/binette:<tag>

   (see `binette/tags`_ for valid values for ``<tag>``)


.. |downloads_binette| image:: https://img.shields.io/conda/dn/bioconda/binette.svg?style=flat
   :target: https://anaconda.org/bioconda/binette
   :alt:   (downloads)
.. |docker_binette| image:: https://quay.io/repository/biocontainers/binette/status
   :target: https://quay.io/repository/biocontainers/binette
.. _`binette/tags`: https://quay.io/repository/biocontainers/binette?tab=tags


.. raw:: html

    <script>
        var package = "binette";
        var versions = ["1.2.1","1.2.0","1.1.2","1.1.1","1.1.0"];
    </script>






Download stats
-----------------

.. raw:: html
    :file: ../../templates/package_dashboard.html

Link to this page
-----------------

Render an |install-with-bioconda| badge with the following MarkDown::

   [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/binette/README.html)

.. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat
   :target: http://bioconda.github.io/recipes/binette/README.html